Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A7 F422 I51 R1 223 69.9 1534784 95.1% 1459579 214.4

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 1,183,048 T→G L191F (TTA→TTC)  potC ← spermidine/putrescine ABC transporter permease

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009131,183,0480TG100.0% 262.0 / NA 77L191F (TTA→TTC) potCspermidine/putrescine ABC transporter permease
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base G (42/35);  total (42/35)

ACCATTTTTTCATTTAACGTCCCCTGTGTTACCTTTCGTTTTATCACGAGCAATAAGCTGGCTGGCAATAACCATCACCAGCGACAGCACCAGTAATATGGTTGCCAGCGCGTTAACTTCCGGCGATACGCCGACTTTGACCATCGAATAAATTTTTAACGGCAGAATTTCATAACTTGGTCCGGTGAC‑GAACGAAGAAACTACCACATCGTCCATCGACAGGGTAAAGCTTAACACCCAGCCCGCCGCCACCGCTGGCATTGCCAGTGGCAGAATGATTTTTCGCAGAATGGTAAATTCGCTGGCACCGAGATCTTTCGCCGCTTCCAGCATTCGCACGTCAAAACCTTTCAGGCGCGAATACACCGTCACCACCACAAATGGCAGGCAGAAGGTGATATGCGAGAACAGCAGCGACCAGAAGCCAAGCTGAATACCCAGCAGCATAAACAGCACCAGCAGCG  >  NC_000913/1182817‑1183280
                                                                                                                                                                                                                                        |                                                                                                                                                                                                                                        
aCCATTTTTTCATTTAACGTCCCCTGTGTTACCTTTCGTTTTATCACGAGCAATAAGCTGGCTGGCAATAACCATCACCAGCGACAGCACCAGTAATATGGTTGCCAGCGCGTTAACTTCCGGCGATACGCCGACTTTGACCATCGAATAAATTTTTAACGGCAGAATTTCATAACTTGGTCCGGTGAC‑GAACGAAGAAACTACCACATCGTCCATCGACAGGGTAAAGCTGAaca                                                                                                                                                                                                                                      >  1:616971/1‑236 (MQ=255)
  cATTTTTTCATTTAACGTCCCCTGTGTTACCTTTCGTTTTATCACGAGCAATAAGCTGGCTGGCAATAACCATCACCAGCGACAGCACCAGTAATATGGTTGCCAGCGCGTTAACTTCCGGCGATACGCCGACTTTGACCATCGAATAAATTTTTAACGGCAGAATTTCATAACTTGGTCCGGTGAC‑GAACGAAGAAACTACCACATCGTCCATCGACAGGGTCAAGCTGAacaa                                                                                                                                                                                                                                     >  1:414502/1‑234 (MQ=255)
      ttttCATTTAACGTCCCCTGTGTTACCTTTCGTTTTATCACGAGCAATAAGCTTGCTGGCAATAACCATCACCAGCGACAGCACCAGTAATATGGTTGCCAGCGCGTTAACTTCCGGCGATACGCCGACTTTGACCATCGAATAAATTTTTAACGGCAGAATTTCATAACTTGGTCCGGTGAC‑GAACGAAGAAACTACCACATCGTCCATCGACAGGGTAAAGCTGAACACCCAGc                                                                                                                                                                                                                                <  1:628009/236‑1 (MQ=255)
          cATTTAACGTCCCCTGTGTTACCTTTCGTTTTATCACGAGCAATAAGCTGGCTGGCAATAACCATCACCAGCGACAGCACCAGTAATATGGTTGCCAGCGCGTTAACTTCCGGCGATACGCCGACTTTGACCATCGAATAAATTTTTAACGGCAGAATTTCATAACTTGGTCCGGTGAC‑GAACGAAGAAACTACAACATCGTCCATCGACAGGGTAAAGCTGAACAACCAGccct                                                                                                                                                                                                                             >  2:37044/1‑234 (MQ=255)
            tttAACGTCCCCTGTGTTACCTTTCGTTTTATCACGAGCAATAAGCTGGCTGGCAATAACCATCACCAGCGACAGCACCAGTAATATGGTTGCCAGCGCGTTAACTTCCGGCGATACGCCGACTTTGACCATCGAATAAATTTTTAACGGCAGAATTTCATAACTTGGTCCGGTGAC‑GAACGAAGAAACTACCACATCGTCCATCGACAGGGTAAAGCTGAACACCCAGCccgcc                                                                                                                                                                                                                           >  2:619694/1‑235 (MQ=255)
                  gTCCCCTGTGTTACCTTTCGTTTTATCACGAGCAATAAGCTGGCTGGCAATAACCATCACCAGCGACAGCACCAGTAATATGGTTGCCAGCGCGTTAACTTCCGGCGATACGCCGACTTTGACCATCGAATAAATTTTTAACGGCAGAATTTCATAACTTGGTCCGGTGAC‑GAACGAAGAAACTACCACATCGTCCATCGACAGGGTAAAGCTGAACACCCAGCCCGCCGCCACCg                                                                                                                                                                                                                    <  1:622373/236‑1 (MQ=255)
                     cccTGTGTTACCTTTCGTTTTATCACGAGCAATAAGCTGGCTGGCAATAACCATCACCAGCGACAGCACCAGTAATATGGTTGCCAGCGCGTTAACTTCCGGCGATACGCCGACTTTGACCATCGAATAAATTTTTAACGGCAGAATTTCATAACTTGGTCCGGTGAC‑GAACGAAGAAACTACCACATCGTCCATCGACAGGGTAAAGCTGAACACCCAGCCCGCCGCCACCGCTg                                                                                                                                                                                                                 >  1:51181/1‑236 (MQ=255)
                          tgtTACCTTTCGTTTTATCACGAGCAATAAGCTGGCTGGCAATAACCATCACCAGCGACAGCACCAGTAATATGGTTGCCAGCGCGTTAACTTCCGGCGATACGCCGACTTTGACCATCGAATAAATTTTTAACGGCAGAATTTCATAACTTGGTCCGGTGAC‑GAACGAAGAAACTACCACATCGTCCATCGACAGGGTAAAGCTGAACACCCAGCCCGCCGCCACCGCTGGCAtt                                                                                                                                                                                                            >  1:111348/1‑236 (MQ=255)
                          tgtTACCTTTCGTTTTATCACGAGCAATAAGCTGGCTGGCAATAACCATCACCAGCGACAGCACCAGTAATATGGTTGCCAGCGCGTTAACTTCCGGCGATACGCCGACTTTGACCATCGAATAAATTTTTAACGGCAGAATTTCATAACTTGGTCCGGTGAC‑GAACGAAGAAACTACCACATCGTCCATCGACAGGGTAAAGCTGAACACCCAGCCAGCCGCCACCGCTGGCAtt                                                                                                                                                                                                            >  2:285783/1‑236 (MQ=255)
                              aCCTTTCGTTTTATCACGAGCAATAAGCTGGCTGGCAATAACCATCACCAGCGACAGCACCAGTAATATGGTTGCCAGCGCGTTAACTTCCGGCGATACGCCGACTTTGACCATCGAATAAATTTTTAACGGCAGAATTTCATAACTTGGTCCGGTGAC‑GAACGAAGAAACTACCACATCGTCCATCGACAGGGTAAAGCTGAACACCCAGCCCGCCGCCACCGCTGGCATTGcc                                                                                                                                                                                                         <  1:435997/235‑1 (MQ=255)
                               ccTTTCGTTTTATCACGAGCAATAAGCTGGCTGGCAATAACCATCACCAGCGACAGCACCAGTAATATGGTTGCCAGCGCGTTAACTTCCGGCGATACGCCGACTTTGACCATCGAATAAATTTTTAACGGCAGAATTTCATAACTTGGTCCGGTGAC‑GAACGAAGAAACTACCACATCGTCCATCGACAGGGCAAAGCTGAAAACCCAACCCCCCACACCCCCTGGCAATGCCa                                                                                                                                                                                                        >  2:435997/1‑235 (MQ=255)
                                cTTTCGTTTTATCACGAGCAATAAGCTGGCTGGCAATAACCATCACCAGCGACAGCACCAGTAATATGGTTGCCAGCGCGTTAACTTCCGGCGATACGCCGACTTTGACCATCGAATAAATTTTTAACGGCAGAATTTCATAACTTGGTCCGGTGAC‑GAACGAAGAAACTACCACATCGTCCATCGACAGGGTAAAGCTGAACACCCAGCCCGCCGCCACCGCTGGCATTGCCAGt                                                                                                                                                                                                      <  1:37044/236‑1 (MQ=255)
                                  ttCGTTTTATCACGAGCAATAAGCTGGCTGGCAATAACCATCACCAGCGACAGCACCAGTAATATGGTTGCCAGCGCGTTAACTTCCGGCGATACGCCGACTTTGACCATCGAATAAATTTTTAACGGCAGAATTTCATAACTTGGTCCGGTGAC‑GAACGAAGAAACTACCACATCGTCCATCGACAGGGTAAAGCTGAACACCCAGCCCGCCGCCACCGCTGGCATTGCCAGTgg                                                                                                                                                                                                    >  2:139566/1‑236 (MQ=255)
                                    cGTTTTATCACGAGCAATAAGCTGGCTGGCAATAACCATCACCAGCGACAGCACCAGTAATATGGTTGCCAGCGCGTTAACTTCCGGCGATACGCCGACTTTGACCATCGAATAAATTTTTAACGGCAGAATTTCATAACTTGGTCCGGTGAC‑GAACGAAGAAACTACCACATCGTCCATCGACAGGGTAAAGCTGAACACCCAGCCCGCCGCCACCGCTGGCATTGCCAGTGGCa                                                                                                                                                                                                  >  1:55740/1‑236 (MQ=255)
                                                aGCAATAAGCTGGCTGGCAATAACCATCACCAGCGACAGCACCAGTAATATGGTTGCCAGCGCGTTAACTTCCGGCGATACGCCGACTTTGACCATCGAATAAATTTTTAACGGCAGAATTTCATAACTTGGTCCGGTGAC‑GAACGAAGAAACTACCACATCGTCCATCGACAGGGTAAAGCTGAACACCCAGCCCGCCGCCACCGCTGGCATTGCCAGTGGCAGAATGATATTTc                                                                                                                                                                                      >  1:652676/1‑236 (MQ=255)
                                                      aaGCTGGCTGGCAATAACCATCACCAGCGACAGCACCAGTAATATGGTTGCCAGCGCGTTAACTTCCGGCGATACGCCGACTTTGACCATCGAATAAATTTTTAACGGCAGAATTTCATAACTTGGTCCGGTGAC‑GAACGAAGAAACTACCACATCGTCCATCGACAGGGTAAAGCTGAACACCCAGCCCGCCGCCACCGCTGGCATTGCCAGTGGCAGAATGATTTTTCGCAGa                                                                                                                                                                                 <  2:111348/235‑1 (MQ=255)
                                                           ggctggcAATAACCATCACCAGCGACAGCACCAGTAATATGGTTGCCAGCGCGTTAACTTCCGGCGATACGCCGACTTTGACCATCGAATAAATTTTTAACGGCAGAATTTCATAACTTGGTCCGGTGAC‑GAACGAAGAAACTACCACATCGTCCATCGACAGGGTAAAGCTGAACACCCAGCCCGCCGCCACCGCTGGCATTGCCAGTGGGCGGAAGATTTTTTGCAGAATGGTa                                                                                                                                                                           >  2:244363/1‑236 (MQ=255)
                                                           ggctggcAATAACCATCACCAGCGACAGCACCAGTAATATGGTTGCCAGCGCGTTAACTTCCGGCGATACGCCGACTTTGACCATCGAATAAATTTTTAACGGCAGAATTTCATAACTTGGTCCGGTGAC‑GAACGAAGAAACTACCACATCGTCCATCGACAGGGTAAAGCTGAACACCCAGCCCGCCGCCACCGCTGGCATTGCCAGTGGCAGAATGATTTTTCGCAGAATGGTa                                                                                                                                                                           >  1:123994/1‑236 (MQ=255)
                                                                          tCACCAGCGACAGCCCCAGTAATATGGTTGCCAGCGCGTTAACTTCCGGCGATACGCCGACTTTGACCATCGAATAAATTTTTAACGGCAGAATTTCATAACTTGGTCCGGTGAC‑GAACGAAGAAACTACCACATCGTCCATCGACAGGGTAAAGCTGAACACCCAGCCCGCCGCCACCGCTGGCATTGCCAGTGGCAGAATGACTTTTCGCAGAATGGTAAATTCGCTGGCACCg                                                                                                                                                            <  1:415933/236‑1 (MQ=255)
                                                                          tCACCAGCGACAGCACCAGTAATATGGTTGCCAGCGCGTTAACTTCCGGCGATACGCCGACTTTGACCATCGAATAAATTTTTAACGGCAGAATTTCATAACTTGGTCCGGTGAC‑GAACGAAGAAACTACCACATCGTCCATCGACAGGGTAAAGCTGAACACCCAGCCCGCCGCCACCGCTGGCATTGCCAGTGGCAGAATGATTTTTCGCAGAATGGTAAATTCGCTGGCACCg                                                                                                                                                            >  1:341951/1‑236 (MQ=255)
                                                                            aCCAGCGACAGCACCAGTAATATGGTTGCCAGCGCGTTAACTTCCGGCGATACGCCGACTTTGACCATCGAATAAATTTTTAACGGCAGAATTTCATAACTTGGTCCGGTGAC‑GAACGAAGAAACTACCACATCGTCCATCGACAGGGTAAAGCTGAACACCCAGCCCGCCGCCACCGCTGGCATTGCCAGTGGCAGAATGATTTTTCGCAGAATGGTAAATTCGCTGGCACCg                                                                                                                                                            >  1:647822/1‑234 (MQ=255)
                                                                             caaggaaCAGCACAAGTAATATGGTTGCCAGGTCGTTAACTTCCGGCGATCCGCCGGCTTTGACCATCGAATAAATTTTTAACGGCAAAATTTCATAACTTGGTCCGGTGAC‑GAACGAAGAAACTACCACATCGTCCATCGACAGGGTAAAGCTGAACACCCAGCCCGCCGCCACCGCTGGCATTGCCAGTGGCAGAATGATTTTTCGCAGAATGGTAAATTCGCTGGCACCgaga                                                                                                                                                         <  2:123994/230‑1 (MQ=255)
                                                                                 cGACAGCACCAGTAATATGGTTGCCAGCGCGTTAACTTCCGGCGATACGCCGACTTTGACCATCGAATAAATTTTTAACGGCAGAATTTCATAACTTGGTCCGGTGAC‑GAACGAAGAAACTACCACATCGTCCATCGACAGGGTAAAGCTGAACACCCAGCCCGCCGCCACCGCTGGCATTGCCAGTGGCAGAATGATTTTTCGCAGAATGGTAAATTCGCTGGCACCGAGAtat                                                                                                                                                      >  1:674256/1‑233 (MQ=255)
                                                                                           aGTAATATGGTTGCCAGCGCGTTAACTTCCGGCGATACGCCGACTTTGACCATCGAATAAATTTTTAACGGCAGAATTTCATAACTTGGTCCGGTGAC‑GAACGAAGAAACTACCACATCGTCCATCGACAGGGTAAAGCTGAACACCCAGCCCGCCGCCACCGCTGGCATTGCCAGTGGCAGAATGATTTTTCGCAGAATGGTAAATTCGCTGGCACCGAGATCTTTcgc                                                                                                                                                 <  2:55740/230‑1 (MQ=255)
                                                                                           aGTAATATGGTTGCCAGCGCGTTAACTTCCGGCGATACGCCGACTTTGACCATCGAATAAATTTTTAACGGCAGAATTTCATAACTTGGTCCGGTGAC‑GAACGAAGAAACTACCACATCGTCCATCGACAGGGTAAAGCTGAACACCCAGCCCGCCGCCACCGCTGGCATTGCCAGTGGCAGAATGATTTTTCGCAGAATGGTAAATTCGCTGGCACCGAGATCTTTcg                                                                                                                                                  <  1:139566/229‑1 (MQ=255)
                                                                                                 atGGTTGCCAGCGCGTTAACTTCCGGCGATACGCCGACTTTGACCATCGAATAAATTTTTAACGGCAGAATTTCATAACTTGGTCCGGTGAC‑GAACGAAGAAACTACCACATCGTCCATCGACAGGGTAAAGCTGAACACCCAGCCCGCCGCCACCGCTGGCATTGCCAGTGGCAGAATGATTTTTCGCAGAATGGTAAATTCGCTGGCACCGAGATCTTTCGCCGCTTCCAGCa                                                                                                                                      >  2:138277/1‑235 (MQ=255)
                                                                                                  tGGTTGCCAGCGCGTTAACTTCCGGCGATACGCCGACTTTGACCATCGAATAAATTTTTAACGGCAGAATTTCATAACTTGGTCCGGTGAC‑GAACGAAGAAACTACCACATCGTCCATCGACAGGGTAAAGCTGAACACCCAGCCCGCCGCCACCGCTGGCATTGCCAGTGGCAGAATGATTTTTCGCAGAATGGTAAATTCGCTGGCACCGAGATCTTTCGCCGCTTCCAGCAtt                                                                                                                                    >  1:407616/1‑236 (MQ=255)
                                                                                                    gTTCCCTGCGCTTTAACTTCCGGCGATCCGCCGACTTTGACCATCGAATAAATTTTTAACGGCAGAATTTCATAACTTGGTCCGGTGAC‑GAACGAAGAAACTACCACATCGTCCATCGACAGGGTAAAGCTGAACACCCAGCCCGCCGCCACCGCTGGCATTGCCAGTGGCAGAATGATTTTTCGCAGAATGGTAAATTCGCTGGCACCGAGATCTTTCGCCGCTTCCAGCATTCg                                                                                                                                  <  2:250001/236‑1 (MQ=255)
                                                                                                       gCCAGCGCGTTAACTTCCGGCGATACGCCGACTTTGACCATCGAATAAATTTTTAACGGCAGAATTTCATAACTTGGTCCGGTGAC‑GAACGAAGAAACTACCACATCGTCCATCGACAGGGTAAAGCTGAACACCCAGCCCGCCGCCACCGCt                                                                                                                                                                                                                  <  2:630186/153‑1 (MQ=255)
                                                                                                       gCCAGCGCGTTAACTTCCGGCGATACGCCGACTTTGACCATCGAATAAATTTTTAACGGCAGAATTTCATAACTTGGTCCGGTGAC‑GAACGAAGAAACTACCACATCGTCCATCGACAGGGTAAAGCTGAACACCCAGCCCGCCGCCACCGCt                                                                                                                                                                                                                  >  1:630186/1‑153 (MQ=255)
                                                                                                       gCCAGCGCGTTAACTTCCGGCGATACGCCGACTTTGACCATCGAATAAATTTTTAACGGCAGAATTTCATAACTTGGTCCGGTGAC‑GAACGAAGAAACTACCACATCGTCCATCGACAGGGTAAAGCTGAACACCCAGCCCGCCGCCACCGCTGGCATTGCCAGTGGCAGAATGATTTTTTGCAGCATGGTAAATTTGCTGGCACCCAGCACTTTCGCCGCTTcccgaaatcgaac                                                                                                                               >  2:136444/1‑225 (MQ=255)
                                                                                                       gCCAGCGCGTTAACTTCCGGCGATACGCCGACTTTGACCATCGAATAAATTTTTAACGGCAGAATTTCATAACTTGGTCCGGTGAC‑GAACGAAGAAACTACCACATCGTCCATCGACAGGGTAAAGCTGAACACCCAGCCCGCCGCCACCGCTGGCATTGCCAGTGGCAGAATGATTTTTCGCAGa                                                                                                                                                                                 <  1:432618/186‑1 (MQ=255)
                                                                                                       gCCAGCGCGTTAACTTCCGGCGATACGCCGACTTTGACCATCGAATAAATTTTTAACGGCAGAATTTCATAACTTGGTCCGGTGAC‑GAACGAAGAAACTACCACATCGTCCATCGACAGGGTAAAGCTGAACACCCAGCCCGCCGCCACCGCTGGCATTGCCAGTGGCAGAATGATTTTTCGCAGa                                                                                                                                                                                 >  2:432618/1‑186 (MQ=255)
                                                                                                       gCCAGCGCGTTAACTTCCGGCGATACGCCGACTTTGACCATCGAATAAATTTTTAACGGCAGAATTTCATAACTTGGTCCGGTGAC‑GAACGAAGAAACTACCACATCGTCCATCGACAGGGTAAAGCTGAACACCCAGCCCGCCGCCACCGCTGGCATTGCCAGTGGCAGAATGATTTTTCGCAGAATGGTAAATTCGCTGGCACCGAGATCTTTcg                                                                                                                                                  >  1:376098/1‑217 (MQ=255)
                                                                                                       gCCAGCGCGTTAACTTCCGGCGATACGCCGACTTTGACCATCGAATAAATTTTTAACGGCAGAATTTCATAACTTGGTCCGGTGAC‑GAACGAAGAAACTACCACATCGTCCATCGACAGGGTAAAGCTGAACACCCAGCCCGCCGCCACCGCTGGCATTGCCAGTGGCAGAATGATTTTTCGCAGAATGGTAAATTCGCTGGCACCGAGATCTTTcg                                                                                                                                                  <  2:376098/217‑1 (MQ=255)
                                                                                                       gCCAGCGCGTTAACTTCCGGCGATACGCCGACTTTGACCATCGAATAAATTTTTAACGGCAGAATTTCATAACTTGGTCCGGTGAC‑GAACGAAGAAACTACCACATCGTCCATCGACAGGGTAAAGCTGAACACCCAGCCCGCCGCCACCGCTGGCATTGCCAGTGGCAGAATGATTTTTCGCAGAATGGTAAATTCGCTGGCACCGAGATCTTTCGCCGCTTCCAGCATTCGCAc                                                                                                                               >  1:316165/1‑236 (MQ=255)
                                                                                                       gCCAGCGCGTTAACTTCCGGCGATACGCCGACTTTGACCATCGAATAAATTTTTAACGGCAGAATTTCATAACTTGGTCCGGTGAC‑GAACGAAGAAACTACCACATCGTCCATCGACAGGGTAAAGCTGAACACCCAGCCCGCCGCCACCGCTGGCATTGCCAGTGGCAGAATGATTTTTCGCAGAATGGTAAATTCGCCTGCACCGAGATCTTTCGCCGCTTCCAGCATTCGCAc                                                                                                                               >  1:296848/1‑236 (MQ=255)
                                                                                                            cgcgTTAACTTCCGGCGATACGCCGACTTTGACCATCGAATAAATTTTTAACGGCAGAATTTCATAACTTGGTCCGGTGAC‑GAACGAAGAAACTACCACATCGTCCATCGACAGGGTAAAGCTGAACACCCAGCCCGCCGCCACCGCTGGCATTGCCAGTGGCAGAATGATTTTTCGCAGAATGGTAAATTCGCTGGCACCGAGATCTTTCGCCGCTTCCAGCATTCGCACGTc                                                                                                                            >  1:188001/1‑234 (MQ=255)
                                                                                                                ttAACTTCCGGCGATACGCCGACTTTGACCATCGAATAAATTTTTAACGGCAGAATTTCATAACTTGGTCCGGTGAC‑GAACGAAGAAACTACCACATCGTCCATCGACAGGGTAAAGCTGAACACCCAGCCCGCCGCCACCGCTGGCATTGCCAGTGGCAGAATGATTTTTCGCAGAATGGTAAATTCGCTGGCACCGAGATCTTTCGCCGCTTCCAGCATTCGCACGTCaa                                                                                                                          <  2:188001/232‑1 (MQ=255)
                                                                                                                     ttCAGGCGATACGCCGACTTTGACCATCGAATAAATTTTTAACGGCAGAATTTCATAACTTGGTCCGGTGAC‑GAACGAAGAAACTACCACATCGTCCATCGACAGGGTAAAGCTGAACACCCAGCCCGCCGCCACCGCTGGCATTGCCAGTGGCAGAATGATTTTTCGCAGAATGGTAAATTCGCTGGCACCGAGATCTTTCGCCGCTTCCAGCATTCGCACGTCAAAACCTTTCa                                                                                                                 <  1:244363/236‑1 (MQ=255)
                                                                                                                       ccGGCGATACGCCGACTTTGACCATCGAATAAATTTTTAACGGCAGAATTTCATAACTTGGTCCGGTGAC‑GAACGAAGAAACTACCACATCGTCCATCGACAGGGTAAAGCTGAACACCCAGCCCGCCGCCACCGCTGGCATTGCCAGTGGCAGAATGATTTTTCGCAGAATGGTAAATTCGCTGGCACCGAGATCTTTCGCCGCTTCCAGCATTCGCACGTCAAAACCTTTCAgg                                                                                                               <  2:341951/236‑1 (MQ=255)
                                                                                                                        cGGCGATACGCCGACTTTGACCATCGAATAAATTTTTAACGGCAGAATTTCATAACTTGGTCCGGTGAC‑GAACGAAGAAACTACCACATCGTCCATCGACAGGGTAAAGCTGAACACCCAGCCCGCCGCCACCGCTGGCATTGCCAGTGGCAGAATGATTTTTCGCAGAATGGTAAATTCGCTGGCACCGAGATCTTTCGCCGGTTCCCGCATTCGTACGTCCAAACCTTTCAGgc                                                                                                              >  2:284844/1‑236 (MQ=255)
                                                                                                                             aatccgcggcTTTGGACATGGAATAAATTTTAAACGGGAGAATTTCATAACTTGGTCCGGTGAC‑GAACGAAGCACCTCCCCCATCGTCCATCGACAGGGTAAAGCTGAACCCCCAGCCCGCCGCCACCGCTGGCATTGCCAGTGGCAGAATGATTTTTCGCAGAATGGTAAATTCGCTGGCACCGAGATCTTTCGCCGCTTCCAGCATTCGCACGTCAAAACCTTTCAGGCGCGaa                                                                                                         <  2:652676/227‑1 (MQ=255)
                                                                                                                               tctccGGCTTGGACCAACCAATAAATGTTAAACGGCAGAATTGCATAACTTGGTCAGGTGAC‑GAACGAAGAACCTACCCCATCGTCCATCGACGGGGTAAAGCTGAACACCCAGCCCGCCGCCACCGCTGGCATTGCCAGTGGCAGAATGATTTTTCGCAGAATGGTAAATTCGCTGGCACCGAGATCTTTCGCCGCTTCCAGCATTCGCACGTCAAAACCTTTCAGGCGCGAAt                                                                                                        <  2:616971/232‑1 (MQ=255)
                                                                                                                               aCGCCGACTTTGACCATCGAATAAATTTTTAACGGCAGAATTTCATAACTTGGTCCGGTGAC‑GAACGAAGAAACTACCACATCGTCCATCGACAGGGTAAAGCTGAACACCCAGCCCGCCGCCACCGCTGGCATTGCCAGTGGCAGAATGATTTTTCGCAGAATGGTAAATTCGCTGGCACCGAGATCTTTCGCCGCTTCCAGCATTCGCACGTCAAAACCTTTCAGGCGCGAAt                                                                                                        <  1:448492/235‑1 (MQ=255)
                                                                                                                                   cGACTTTGACCATCGAATAAATTTTTAACGGCAGAATTTCATAACTTGGTCCGGTGAC‑GAACGAAGAAACTACCACATCGTCCATCGACAGGGTAAAGCTGAACACCCAGCCCGCCGCCACCGCTGGCATTGCCAGTGGCAGAATGATTTTTCGCAGAATGGTAAATTCGCTGGCACCGAGATCTTTCGCCGCTTCCAGCATTCGCACGTCAAAACCTTTCAGGCGCGAATACAcc                                                                                                   <  2:51181/236‑1 (MQ=255)
                                                                                                                                   cGACTTTGACCATCGAATAAATTTTTAACGGCAGAATTTCATAACTTGGTCCGGTGAC‑GAACGAAGAAACTACCACATCGTCCATCGACAGGGTAAAGCTGAACACCCAGCCCGCCGCCACCGCTGGCATTGCCAGTGGCAGAATGATTTTTCGCAGAATGGTAAATTCGCTGGCACCGAGATCTTTCGCCGCTTCCAGCATTCGCACGTCAAAACCTTTCAGGCGCGAATACAcc                                                                                                   <  1:619694/236‑1 (MQ=255)
                                                                                                                                     aCTTTGACCATCAAATAAATTTGTAACGGCAGAATGTCATAACTGGGTCCGGTGAC‑GAACGAAGAAGCTACCACATCGTCCATCGACAGGATAAAGCTGAACCCCCAGCCCGCCGCCACCGCTGGCATTGCCAGTGGCAGAATGATTTTTCGCAGAATGGTAAATTCGCTGGCACCGAGATCTTTCGCCGCTTCCAGCATTCGCACGTCAAAACCTTTCAGGCGCGAATaca                                                                                                     <  2:414502/232‑1 (MQ=255)
                                                                                                                                               tCGAATAAATTTTTAACGGCAGAATTTCATAACTTGGTCCGGTGAC‑GAACGAAGAAACTACCACATCGTCCATCGACAGGGTAAAGCTGAACACCCAGCCCGCCGCCACCGCTGGCATTGCCAGTGGCAGAATGATTTTTCGCAGAATGGTAAATTCGCTGGCACCGAGATCTTTCGCCGCTTCCAGCATTCGCACGTCaa                                                                                                                          >  1:402230/1‑201 (MQ=255)
                                                                                                                                               tCGAATAAATTTTTAACGGCAGAATTTCATAACTTGGTCCGGTGAC‑GAACGAAGAAACTACCACATCGTCCATCGACAGGGTAAAGCTGAACACCCAGCCCGCCGCCACCGCTGGCATTGCCAGTGGCAGAATGATTTTTCGCAGAATGGTAAATTCGCTGGCACCGAGATCTTTCGCCGCTTCCAGCATTCGCACGTCaa                                                                                                                          <  2:402230/201‑1 (MQ=255)
                                                                                                                                               tCGAATAAATTTTTAACGGCAGAATTTCATAACTTGGTCCGGTGAC‑GAACGAAGAAACTACCACATCGTCCATCGACAGGGTAAAGCTGAACACCCAGCCCGCCGCCACCGCTGGCATTGCCAGTGGCAGAATGATTTTTCGCAGAATGGTAAATTCGCTGGCACCGAGATCTTTCGCCGCTTCCAGCATTCGCACGTCAAAACCTTTCAGGCGCGAATACACCGTCACCACcaca                                                                                       >  1:577662/1‑236 (MQ=255)
                                                                                                                                                cGAATAAATTTTTAACGGCAGAATTTCATAACTTGGTCCGGTGAC‑GAACGAAGAAACTACCACATCGTCCATCGACAGGGTAAAGCTGAACACCCAGCCCGCCGCCACCGCTGGCATTGCCAGTGGCAGAATGATTTTTCGCAGAATGGTAAATTCGCTGGCACCGAGATCTTTCGCCGCTTCCAGCATTCGCACGTCAAAACCTTTCAGGCGCGAATACACCGTCACCACCACaa                                                                                      >  1:129251/1‑236 (MQ=255)
                                                                                                                                                                   aaaattgcgaaaCTGGGTCCGGTAAC‑GAACGAAGAAACTACCACATCGTCCATCGACAGGGTAAAGCTGAACACCCAGCCCGCCGCCACCGCTGGCATTGCCAGTGGCAGAATGATTTTTCGCAGAATGGTAAATTCGCTGGCACCGAGATCTTTCGCCGCTTCCAGCATTCGCACGTCAAAACCTTTCAGGCGCGAATACACCGTCACCACCACAAATGGCAGGCAGAAGGTGat                                                                   <  2:55832/226‑1 (MQ=255)
                                                                                                                                                                    aagtttCATAGTGTGGTCCGGAGAC‑GAACGAAGAAACTACCACATCGTCCATCGACAGGGTAACGCTGAACACCCGCCCCGCCGCCACCGCTGGCATTGCCAGTGGCAGAATGATTTTTCGCAGAATGGTAAATTCGCTGGCACCGAGATCTTTCGCCGCTTCCAGCATTCGCACGTCAAAACCTTTCAGGCGCGAATACACCGTCACCACCACAAATGGCAGGCAGAAGGTGata                                                                  <  2:407616/233‑1 (MQ=255)
                                                                                                                                                                      aTTTCATAACTTGGTCCGGTGAC‑GAACGAAGAATCTACCACATCGTCCATCGACAGGGTAAAGCTGAACACCCAGCCCGCCGCCACCGCTGGCATTGCCAGTGGCAGAATGATTTTTCGCAGAATGGTAAATTCGCTGGCACCGAGATCTTTCGCCGCTTCCAGCATTCGCACGTCAAAACCTTTCAGGCGCGAATACACCGTCACCACCACAAATGGCAGGCAGAAGGTGa                                                                    <  1:221446/232‑1 (MQ=255)
                                                                                                                                                                      aTTTCATAACTTGGTCCGGTGAC‑GAACGAAGAAACTACCACATCGTCCATCGACAGGGTAAAGCTGAACACCCAGCCCGCCGCCACCGCTGGCATTGCCAGTGGCAGAATGATTTTTCGCAGAATGGTAAATTCGCTGGCACCGAGATCTTTCGCCGCTTCCAGCATTCGCACGTCAAAACCTTTCAGGCGCGAATACACCGTCACCACCACAAATGGCAGGCAGAAGGTGa                                                                    <  1:285783/232‑1 (MQ=255)
                                                                                                                                                                       agtgcagaactGGGCCGGGGACAGAACGAAGAAACTACCGCCTCGTCCATCGACAGGGTAAAGCGGAACACCCAGCCCGCCGCCACCGCTGGCATTGCCAGTGGCAGAATGATTTTTCGCAGAATGGTAAATTCGCTGGCACCGAGATCTTTCGCCGCTTCCAGCATTCGCACGTCAAAACCTTTCAGGCGCGAATACACCGTCACCACCACAAATGGCAGGCAGAAGGTGa                                                                    <  2:674256/222‑1 (MQ=255)
                                                                                                                                                                            tAAGTTGGTCGGGTGCC‑GAACGAAGAACCTCCCACATCGTCCAACGGCAGGGTAAAGCTGAACACCAAGCCCGCCGCCACCGCTGGCATTGCCAGTGGCAGAATGATTTTTCGCAGAATGGTAAATTCGCTGGCACCGAGATCTTTCGCCGCTTCCAGCATTCGCACGTCAAAACCTTTCAGGCGCGAATACACCGTCACCACCACAAATGGCAGGCAGAAGGTGATATGCGAGaa                                                          <  2:647822/236‑1 (MQ=255)
                                                                                                                                                                                  ggTCCGGTGAC‑GAACGAAGAAACTACCACATCGTCCATCGACAGGGTAAAGCTGAACACCCAGCCCGCCGCCACCGCTGGCATTGCCAGTGGCAGAATGATTTTTCGCAGAATGGTAAATTCGCTGGCa                                                                                                                                                               >  1:367095/1‑129 (MQ=255)
                                                                                                                                                                                  ggTCCGGTGAC‑GAACGAAGAAACTACCACATCGTCCATCGACAGGGTAAAGCTGAACACCCAGCCCGCCGCCACCGCTGGCATTGCCAGTGGCAGAATGATTTTTCGCAGAATGGTAAATTCGCTGGCa                                                                                                                                                               <  2:367095/129‑1 (MQ=255)
                                                                                                                                                                                  ggTCCGGTGAC‑GAACGAAGAAACTACCACATCGTCCATCGACAGGGTAAAGCTGAACACCCAGCCCGCCGCCACCGCTGGCATTGCCAGTGGCAGAATGATTTTTCGCAGAATGGTAAATTCGCTGGCACCGAGATCTTTCGCCGCTTCCAGCATTCGCACGTCAAAACCTTTCAGGCGCGAATACACCGTCACCACCACAAATGGCAGGCAGAAGGTGATATGCGAGAAcagcag                                                    <  2:129251/236‑1 (MQ=255)
                                                                                                                                                                                        gTGAC‑GAACGAAGAAACTACCACATCGTCCATCGACAGGGTAAAGCTGAACACCCAGCCCGCCGCCACCGCTGGCATTGCCAGTGGCAGAATGATTTTTCGCAGAATGGTAAATTCGCTGGCACCGAGATCTTTCGCCGCTTCCAGCATTCGCACGTCAAAACCTTTCAGGCGCGAATACACCGTCACCACCACAAATGGCAGGCAGAAGGTGATATGCGAGAACAGCAGCGACCa                                              >  1:605216/1‑236 (MQ=255)
                                                                                                                                                                                                 cgaaGAAACTACCACATCGTCCATCGACAGGGTAAAGCTGAACACCCAGCCCGCCGCCACCGCTGGCATTGCCAGTGGCAGAATGATTTTTCGCAGAATGGTAAATTCGCTGGCACCGAGATCTTTCGCCGCTTCCAGCATTCGCACGTCAAAACCTTTCAGGCGCGAATAAACCGTCACCACCACAAATGGCAGGCAGAAGGTGATATGCGAGCACAGCAGCAACCAGAAGCCaa                                      >  2:518976/1‑236 (MQ=255)
                                                                                                                                                                                                             cacaTCGTCCATCGACAGGGTAAAGCTGAACACCCAGCCCGCCGCCACCGCTGGCATTGCCAGTGGCAGAATGATTTTTCGCAGAATGGTAAATTCGCTGGCACCGAGATCTTTCGCCGCTTCCAGCATTCGCACGTCAAAACCTTTCAGGCGCGAATACACCGTCACCACCACAAATGGCAGGCAGAAGGTGATATGCGAGAACAGCAGCGACCAGAAGCCAAGCTGAATACCca                          <  1:138277/236‑1 (MQ=255)
                                                                                                                                                                                                                aTCGTCCATCGACAGGGTAAAGCTGAACACCCAGCCCGCCGCCACCg                                                                                                                                                                                                                    <  2:314495/47‑1 (MQ=255)
                                                                                                                                                                                                                aTCGTCCATCGACAGGGTAAAGCTGAACACCCAGCCCGCCGCCACCg                                                                                                                                                                                                                    >  1:314495/1‑47 (MQ=255)
                                                                                                                                                                                                                  cGTCCATCGACAGGGTAAAGCTGAACACCCAGCCCGCCGCCACCGCTGGCATTGCCAGTGGCAGAATGATTTTTCGCAGAATGGTAAATTCGCTGGCACCGAGATCTTTCGCCGCTTCCAGCATTCGCACGTCAAAACCTTTCAGGCGCGAATACACCGTCACCACCCCAAATGGCAGGCAGAAGGTGATATGCGGGAAAAGCAGCGACCAGAAGCCAAGCTGAAAAACcagaacg                     >  2:95122/1‑232 (MQ=255)
                                                                                                                                                                                                                   gTCCATCGAAAGGGTAAAGCTGAACACCCAGCCCGCCGCCACCGCTGGCATTGCCAGTGGCAGAATGATTTTTCGCAGAATGGTAAATTCGCTGGCACCGAGATCTTTCGCCGCTTCCAGCATTCGCACGTCAAAACCTTTCAGGCGCGAATACACCGTCACCACCACAAATGGCAGGCAGAAGGTGATATGCGAGAACAGCAGCGACCAGAAGCCAAGCTGAATACCCAgcagca                    <  1:469169/236‑1 (MQ=255)
                                                                                                                                                                                                                    tCCATCGACAGGGTAAAGCTGAACACCCAGCCCGCCGCCACCGCTGGCATTGCCAGTGGCAGAATGATTTTTCGCAGAATGGTAAATTCGCTGGCACCGAGATCTTTCGCCGCTTCCAGCATTCGCACGTCAAAACCTTTCAGGCGCGAATACACCGTCACCACCACAACTGGCAGGCAGAAAGTGATATGCGAGAACAGCAGCGACCAGAAGCCAAGCTGAATACCCagcagctt                   >  2:450292/1‑234 (MQ=255)
                                                                                                                                                                                                                    tCCATCGACAGGGTAAAGCTGAACACCCAGCCCGCCGCCACCGCTGGCATTGCCAGTGGCAGAATGATTTTTCGCAGAATGGTAAATTCGCTGGCACCGAGATCTTTCGCCGCTTCCAGCATTCGCACGTCAAAACCTTTCAGGCGCGAATACACCGTCACCACCACAAATGGCAGGCAGaa                                                                         >  1:233033/1‑182 (MQ=255)
                                                                                                                                                                                                                    tCCATCGACAGGGTAAAGCTGAACACCCAGCCCGCCGCCACCGCTGGCATTGCCAGTGGCAGAATGATTTTTCGCAGAATGGTAAATTCGCTGGCACCGAGATCTTTCGCCGCTTCCAGCATTCGCACGTCAAAACCTTTCAGGCGCGAATACACCGTCACCACCACAAATGGCAGGCAGaa                                                                         <  2:233033/182‑1 (MQ=255)
                                                                                                                                                                                                                    tCCATCGACAGGGTAAAGCTGAACACCCAGCCCGCCGCCACCGCTGGCATTGCCAGTGGCAGAATGATTTTTCGCAGAATGGTAAATTCGCTGGCACCGAGATCTTTCGCCGCTTCCAGCATTCGCACGTCAAAACCTTTCAGGCGCGAATACACCGTCACCACCACAAATGGCAGGCAGAAGGTGATATGCGAGAACAGCAGCGACCAGAAGCCAAGCTGAATACCCAgcagca                    >  2:636436/1‑235 (MQ=255)
                                                                                                                                                                                                                    tCCATCGACAGGGTAAAGCTGAACACCCAGCCCGCCGCCACCGCTGGCATTGCCAGTGGCAGAATGATTTTTCGCAGAATGGTAAATTCGCTGGCACCGAGATCTTTCGCCGCTTCCAGCATTCGCACGTCAAAACCTTTCAGGCGCGAATACACCGTCACCACCACAAATGGCAGGCAGAAGGTGATATGCGAGAACAGCAGCGACCAGAAGCCAAGCTGAATACCCAgcagca                    >  1:297016/1‑235 (MQ=255)
                                                                                                                                                                                                                    tCCATCGACAGGGTAAAGCTGAACACCCAGCCCGCCGCCACCGCTGGCATTGCCAGTGGCAGAATGATTTTTCGCAGAATGGTAAATTCGCTGGCACCGAGATCTTTCGCCGCTTCCAGCATTCGCACGTCAAAACCTTTCAGGCGCGAATACACCGTCACCACCACAAATGGCAGGCAGAAGGTGATATGCGAGAACAGCAGCGACCAGAAGCCAAGCTGAATACCCAGCAGCAt                   >  1:637282/1‑236 (MQ=255)
                                                                                                                                                                                                                              gggTAAAGCTGAACACCCAGCCCGCCGCCACCGCTGGCATTGCCAGTGGCAGAATGATTTTTCGCAGAATGGTAAATTCGCTGGCACCGAGATCTTTCGCCGCTTCCAGCATTCGCACGTCAAAACCTTTCAGGCGCGAATACACCGTCACCACCACAAATGGCAGGCAGAAGGTGATATGCGAGAACAGCAGCGACCAGAAGCCAAGCTGAATACCCAGCAGCATAAACAGCAcc         >  1:106886/1‑236 (MQ=255)
                                                                                                                                                                                                                              gggTAAAGCTGAACACCCAGCCCGCCGCCACCGCTGGCATTGCCAGTGGCAGAATGATTTTTCGCAGAATGGTAAATTCGCTGGCACCGAGATCTTTCGCCGCTTCCAGCATTCGCACGTCAAAACCTTTCAGGCGCGAATACACCGTCACCACCACAAATGGCAGGCAGAAGGTGATATGCGAGAACAGCAACGACCAGCAGCCAAACTGAATACCCAGCAGCATAAACCACAcc         >  2:741228/1‑236 (MQ=255)
                                                                                                                                                                                                                                     gCTGAACACCCAGCCCGCCGCCACCGCTGGCATTGCCAGTGGCAGAATGATTTTTCGCAGAATGGTAAATTCGCTGGCACCGAGATCTTTCGCCGCTTCCAGCATTCGCACGTCAAAACCTTTCAGGCGCGAATACACCGTCACCACCACAAATGGCAGGCAGAAGGCGATATGCGAGAACAGCAGCGACCAGAAGCCAAGCAGAATACCCAGCCGACTAAACAGGACcagcaggc  >  2:119692/1‑234 (MQ=255)
                                                                                                                                                                                                                                        |                                                                                                                                                                                                                                        
ACCATTTTTTCATTTAACGTCCCCTGTGTTACCTTTCGTTTTATCACGAGCAATAAGCTGGCTGGCAATAACCATCACCAGCGACAGCACCAGTAATATGGTTGCCAGCGCGTTAACTTCCGGCGATACGCCGACTTTGACCATCGAATAAATTTTTAACGGCAGAATTTCATAACTTGGTCCGGTGAC‑GAACGAAGAAACTACCACATCGTCCATCGACAGGGTAAAGCTTAACACCCAGCCCGCCGCCACCGCTGGCATTGCCAGTGGCAGAATGATTTTTCGCAGAATGGTAAATTCGCTGGCACCGAGATCTTTCGCCGCTTCCAGCATTCGCACGTCAAAACCTTTCAGGCGCGAATACACCGTCACCACCACAAATGGCAGGCAGAAGGTGATATGCGAGAACAGCAGCGACCAGAAGCCAAGCTGAATACCCAGCAGCATAAACAGCACCAGCAGCG  >  NC_000913/1182817‑1183280

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A