Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A7 F422 I52 R1 239 220.4 11079197 93.2% 10325811 100.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 1,183,048 T→G L191F (TTA→TTC)  potC ← spermidine/putrescine ABC transporter permease

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009131,183,0480TG100.0% 667.3 / NA 186L191F (TTA→TTC) potCspermidine/putrescine ABC transporter permease
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base G (87/99);  total (87/99)

Only 100 of 186 total aligned reads displayed.

CTTTGACCATCGAATAAATTTTTAACGGCAGAATTTCATAACTTGGTCCGGTGACGAACGAAGAAACTACCACATCGTCCATCGACAGGGTAAAGCTTAACACCCAGCCCGCCGCCACCGCTGGCATTGCCAGTGGCAGAATGATTTTTCGCAGAATGGTAAATTCGCTGGCACCGAGATCTTTCGCCGCTTCC  >  NC_000913/1182951‑1183144
                                                                                                 |                                                                                                
 tttGACCATCGAATAAATTTTTAACGGCAGAATTTCATAACTTGGTCCGGTGACGAACGAAGAAACTACCACATCGTCCATCGACAGGGTAAAGCTGAac                                                                                               <  1:4387311/100‑1 (MQ=255)
 tttGACCATCGAATAAATTTTTAACGGCAGAATTTCATAACTTGGTCCGGTGACGAACGAAGAAACTACCACATCGTCCATCGACAGGGTAAAGCTGAac                                                                                               <  2:3518614/100‑1 (MQ=255)
  ttGACCATCGAATAAATTTTTAACGGCAGAATTTCATAACTTGGTCCGGTGACGAACGAAGAAACTACCACATCGTCCATCGACAGGGTAAAGCTGAaca                                                                                              >  2:407811/1‑100 (MQ=255)
   tGACCATCGAATAAATTTTTAACGGCAGAATTTCATAACTTGGTCCGGTGACGAACGAAGAAACTACCACATCGTCCATCGACAGGGTAAAGCTGAacac                                                                                             >  1:3357762/1‑100 (MQ=255)
   tGACCATCGAATAAATTTTTAACGGCAGAATTTCATAACTTGGTCCGGTGACGAACGAAGAAACTACCACATCGTCCATCGACAGGGTAAAGCTGAacac                                                                                             >  2:2730815/1‑100 (MQ=255)
   tGACCATCGAATAAATTTTTAACGGCAGAATTTCATAACTTGGTCCGGTGACGAACGAAGAAACTACCACATCGTCCATCGACAGGGTAAAGCTGAacac                                                                                             <  2:4004651/100‑1 (MQ=255)
   tGACCATCGAATAAATTTTTAACGGCAGAATTTCATAACTTGGTCCGGTGACGAACGAAGAAACTACCACATCGTCCATCGACAGGGTAAAGCTGAacac                                                                                             <  2:3950506/100‑1 (MQ=255)
     aCCATCGAATAAATTTTTAACGGCAGAATTTCATAACTTGGTCCGGTGACGAACGAAGAAACTACCACATCGTCCATCGACAGGGTAAAGCTGAACAccc                                                                                           <  2:4489969/100‑1 (MQ=255)
     aCCATCGAATAAATTTTTAACGGCAGAATTTCATAACTTGGTCCGGTGACGAACGAAGAAACTACCACATCGTCCATCGACAGGGTAAAGCTGAACAccc                                                                                           <  1:2563417/100‑1 (MQ=255)
      ccATCGAATAAATTTTTAACGGCAGAATTTCATAACTTGGTCCGGTGACGAACGAAGAAACTACCACATCGTCCATCGACAGGGTAAAGCTGAACACCCa                                                                                          <  2:1856030/100‑1 (MQ=255)
      ccATCGAATAAATTTTTAACGGCAGAATTTCATAACTTGGTCCGGTGACGAACGAAGAAACTACCACATCGTCCATCGACAGGGTAAAGCTGAACACCCa                                                                                          >  1:225878/1‑100 (MQ=255)
      ccATCGAATAAATTTTTAACGGCAGAATTTCATAACTTGGTCCGGTGACGAACGAAGAAACTACCACATCGTCCATCGACAGGGTAAAGCTGAACACCCa                                                                                          >  2:2170820/1‑100 (MQ=255)
       cATCGAATAAATTTTTAACGGCAGAATTTCATAACTTGGTCCGGTGACGAACGAAGAAACTACCACATCGTCCATCGACAGGGTAAAGCTGAACACCCAg                                                                                         <  2:2308422/100‑1 (MQ=255)
       cATCGAATAAATTTTTAACGGCAGAATTTCATAACTTGGTCCGGTGACGAACGAAGAAACTACCACATCGTCCATCGACAGGGTAAAGCTGAACACCCAg                                                                                         >  1:563600/1‑100 (MQ=255)
          cGAATAAATTTTTAACGGCAGAATTTCATAACTTGGTCCGGTGACGAACGAAGAAACTACCACATCGTCCATCGACAGGGTAAAGCTGAACACCCAGccc                                                                                      <  2:2599166/100‑1 (MQ=255)
           gAATAAATTTTTAACGGCAGAATTTCATAACTTGGTCCGGTGACGAACGAAGAAACTACCACATCGTCCATCGACAGGGTAAAGCTGAACACCCAGCccg                                                                                     >  2:66627/1‑100 (MQ=255)
             aTAAATTTTTAACGGCAGAATTTCATAACTTGGTCCGGTGACGAACGAAGAAACTACCACATCGTCCATCGACAGGGTAAAGCTGAACACCCAGCccgcc                                                                                   <  1:4658712/100‑1 (MQ=255)
             aTAAATTTTTAACGGCAGAATTTCATAACTTGGTCCGGTGACGAACGAAGAAACTACCACATCGTCCATCGACAGGGTAAAGCTGAACACCCAGCccgcc                                                                                   >  1:3196886/1‑100 (MQ=255)
             aTAAATTTTTAACGGCAGAATTTCATAACTTGGTCCGGTGACGAACGAAGAAACTACCACATCGTCCATCGACAGGGTAAAGCTGAACACCCAGCccgcc                                                                                   >  2:4112082/1‑100 (MQ=255)
              tAAATTTTTAACGGCAGAATTTCATAACTTGGTCCGGTGACGAACGAAGAAACTACCACATCGTCCATCGACAGGGTAAAGCTGAACACCCAGCccgccg                                                                                  >  1:4202096/1‑100 (MQ=255)
                aaTTTTTAACGGCAGAATTTCATAACTTGGTCCGGTGACGAACGAAGAAACTACCACATCGTCCATCGACAGGGTAAAGCTGAACACCCAGCCCgccgcc                                                                                <  1:129694/100‑1 (MQ=255)
                aaTTTTTAACGGCAGAATTTCATAACTTGGTCCGGTGACGAACGAAGAAACTACCACAGCGTCCATCGACAGGGTAAAGCTGAACACCCAGCCCgccgcc                                                                                <  2:2659474/100‑1 (MQ=255)
                 aTTTTTAACGGCAGAATTTCATAACTTGGTCCGGTGACGAACGAAGAAACTACCACATCGTCCATCGACAGGGTAAAGCTGAACACCCAGCCCGCCGCCa                                                                               >  1:5526189/1‑100 (MQ=255)
                  tttttAACGGCAGAATTTCATAACTTGGTCCGGTGACGAACGAAGAAACTACCACATCGTCCATCGACAGGGTAAAGCTGAACACCCAGCCCGCCGCCAc                                                                              <  2:3167326/100‑1 (MQ=255)
                       aaCGGCAGAATTTCATCACTTGGTCCGGTGACGAACGAAGAAACTACCACATCGTCCATCGACAGGGTAAAGCTGAACACCCAGCCCGCCGCCACCGCTg                                                                         <  1:4578026/100‑1 (MQ=255)
                        aCGGCAGAATTTCATAACTTGGTCCGGTGACGAACGAAGAAACTACCACATCGTCCATCGACAGGGTAAAGCTGAACACCCAGCCCGCCGCCACCGCTgg                                                                        <  1:1094984/100‑1 (MQ=255)
                        aCGGCAGAATTTCATAACTTGGTCCGGTGACGAACGAAGAAACTACCACATCGTCCATCGACAGGGTAAAGCTGAACACCCAGCCCGCCGCCACCGCTgg                                                                        <  1:2988299/100‑1 (MQ=255)
                        aCGGCAGAATTTCATAACTTGGTCCGGTGACGAACGAAGAAACTACCACATCGTCCATCGACAGGGTAAAGCTGAACACCCAGCCCGCCGCCACCGCTgg                                                                        <  2:2129175/100‑1 (MQ=255)
                         cGGCAGAATTTCATAACTTGGTCCGGTGACGAACGAAGAAACTACCACATCGTCCATCGACAGGGTAAAGCTGAACACCCAGCCCGCCGCCACCGCTGGc                                                                       >  1:905055/1‑100 (MQ=255)
                            cAGAATTTCATAACTTGGTCCGGTGACGAACGAAGAAACTACCACATCGTCCATCGACAGGGTAAAGCTGAACACCCAGCCCGCCGCCACCGCTGGCAtt                                                                    <  2:3539959/100‑1 (MQ=255)
                             aGAATTTCATAACTTGGTCCGGTGACGAACGAAGAAACTACCACATCGTCCATCGACAGGGTAAAGCTGAACACCCAGCCCGCCGCCACCGCTGGCATTg                                                                   <  1:4275348/100‑1 (MQ=255)
                              gAATTTCATAACTTGGTCCGGTGACGAACGAAGAAACTACCACATCGTCCATCGACAGGGTAAAGCTGAACACCCAGCCCGCCGCCACCGCTGGCATTGc                                                                  <  1:1780874/100‑1 (MQ=255)
                              gAATTTCATAACTTGGTCCGGTGACGAACGAAGAAACTACCACATCGTCCATCGACAGGGTAAAGCTGAACACCCAGCCCGCCGCCACCGCTGGCATTGc                                                                  >  2:2837180/1‑100 (MQ=255)
                               aaTTTCATAACTTGGTCCGGTGACGAACGAAGAAACTACCACATCGTCCATCGACAGGGTAAAGCTGAACACCCAGCCCGCCGCCACCGCTGGCATTGcc                                                                 >  2:4714699/1‑100 (MQ=255)
                                  ttCATAACTTGGTCCGTTGACGAACGAAGAAACTACCACATCGTCCATCGACAGGGTAAAGCTGAACACCCAGCCCGCCGCCACCGCTGGCATTGCCAGt                                                              <  1:2732300/100‑1 (MQ=255)
                                    cATAACTTGGTCCGGTGACGAACGAAGAAACTACCACATCGTCCATCGACAGGGTAAAGCTGAACACCCAGCCCGCCGCCACCGCTGGCATTGCCAGTgg                                                            <  1:5265022/100‑1 (MQ=255)
                                     aTAACTTGGTCCGGTGACGAACGAAGAAACTACCACATCGTCCATCGACAGGGTAAAGCTGAACACCCAGCCCGCCGCCACCGCTGGCATTGCCAGTGGc                                                           <  1:275633/100‑1 (MQ=255)
                                     aTAACTTGGTCCGGTGACGAACGAAGAAACTACCACATCGTCCATCGACAGGGTAAAGCTGAACACCCAGCCCGCCGCCACCGCTGGCATTGCCAGTGGc                                                           <  1:2248363/100‑1 (MQ=255)
                                     aTAACTTGGTCCGGTGACGAACGAAGAAACTACCACATCGTCCATCGACAGGGTAAAGCTGAACACCCAGCCCGCCGCCACCGCTGGCATTGCCAGTGGc                                                           <  1:160386/100‑1 (MQ=255)
                                     aTAACTTGGTCCGGTGACGAACGAAGAAACTACCACATCGTCCATCGACAGGGTAAAGCTGAACACCCAGCCCGCCGCCACCGCTGGCATTGCCAGTGGc                                                           >  1:4601980/1‑100 (MQ=255)
                                     aTAACTTGGTCCGGTGACGAACGAAGAAACTACCACATCGTCCATCGACAGGGTAAAGCTGAACACCCAGCCCGCCGCCACCGCTGGCATTGCCAGTGGc                                                           <  1:3876374/100‑1 (MQ=255)
                                      tAACTTGGTCCGGTGACGAACGAAGAAACTACCACATCGTCCATCGACAGGGTAAAGCTGAACACCCAGCCCGCCGCCACCGCTGGCATTGCCAGTGGCa                                                          >  1:1517061/1‑100 (MQ=255)
                                        aCTTGGTCCGGTGACGAACGAAGAAACTACCACATCGTCCATCGACAGGGTAAAGCTGAACACCCAGCCCGCCGCCACCGCTGGCATTGCCAGTGGCAGa                                                        >  1:105434/1‑100 (MQ=255)
                                        aCTTGGTCCGGTGACGAACGAAGAAACTACCACATCGTCCATCGACAGGGTAAAGCTGAACACCCAGCCCGCCGCCACCGCTGGCATTGCCAGTGGCAGa                                                        >  2:3625041/1‑100 (MQ=255)
                                         cTTGGTCCGGTGACGAACGAAGAAACTACCACATCGTCCATCGACAGGGTAAAGCTGAACACCCAGCCCGCCGCCACCGCTGGCATTGCCAGTGGCAGaa                                                       >  1:195677/1‑100 (MQ=255)
                                            ggTCCGGTGACGAACGAAGAAACTACCACATCGTCCATCGACAGGGTAAAGCTGAACACCCAGCCCGCCGCCACCGCTGGCATTGCCAGTGGCAGAATGa                                                    >  1:3661265/1‑100 (MQ=255)
                                            ggTCCGGTGACGAACGAAGAAACTACCACATCGTCCATCGACAGGGTAAAGCTGAACACCCAGCCCGCCGCCACCGCTGGCATTGCCAGTGGCAGAATGa                                                    >  2:2041056/1‑100 (MQ=255)
                                                cGGTGACGAACGAAGAAACTACCACATCGTCCATCGACAGGGTAAAGCTGAACACACAGCCCGCCGCCACCGCTGGCATTGCCAGTGGCAGAATGAtttt                                                >  2:281176/1‑100 (MQ=255)
                                                  gTGACGAACGAAGAAACTACCACATCGTCCATCGACAGGGTAAAGCTGAACACCCAGCCCGCCGCCACCGCTGGCATTGCCAGTGGCAGAATGATTTTTc                                              <  1:3844652/100‑1 (MQ=255)
                                                   tGACGAACGAAGAAACTACCACATCGTCCATCGACAGGGTAAAGCTGAACACCCAGCCCGCCGCCACCGCTGGCATTGCCAGTGGCAGAATGATTTTTCg                                             <  2:5218817/100‑1 (MQ=255)
                                                    gACGAACGAAGAAACTACCACATCGTCCATCGTCAGGGTAAATCTGAACACCCAGCCCGCCGCCACCGCTGGCATTGCCAGTGGCAGAATGATTTTTCGc                                            <  2:5492214/100‑1 (MQ=255)
                                                    gACGAACGAAGAAACTACCACATCGTCCATCGACAGGGTAAAGCTGAACACCCAGCCCGCCGCCACCGCTGGCATTGCCAGTGGCAGAATGATTTTTCGc                                            <  2:3107369/100‑1 (MQ=255)
                                                    gACGAACGAAGAAACTACCACATCGTCCATCGACAGGGTAAAGCTGAACACCCAGCCCGCCGCCACCGCTGGCATTGCCAGTGGCAGAATGATTTTTCGc                                            >  1:1336997/1‑100 (MQ=255)
                                                    gACGAACGAAGAAACTACCACATCGTCCATCGACAGGGTAAAGCTGAACACCCAGCCCGCCGCCACCGCTGGCATTGCCAGTGGCAGAATGATTTTTCGc                                            <  2:643587/100‑1 (MQ=255)
                                                      cgaacgaaGAAACTACCACATCGTCCATCGACAGGGTAAAGCTGAACACCCAGCCCGCCGCCACCGCTGGCATTGCCAGTGGCAGAATGATTTTTCGCAg                                          >  1:743475/1‑100 (MQ=255)
                                                        aacgaaGAAACTACCACATCGTCCATCGACAGGGTAAAGCTGAACACCCAGCCCGCCGCCACCGCTGGCATTGCCAGTGGCAGAATGATTTTTCGCAGaa                                        >  1:315210/1‑100 (MQ=255)
                                                         acgaaGAAACTACCACATCGTCCATCGACAGGGTAAAGCTGAACACCCAGCCCGCCGCCACCGCTGGCATTGCCAGTGGCAGAATGATTTTTCGCATAAt                                       <  2:5044475/100‑1 (MQ=255)
                                                         acgaaGAAACTACCACATCGTCCATCGACAGGGTAAAGCTGAACACCCAGCCCGCCGCCACCGCTGGCATTGCCAGTGGCAGAATGATTTTTCGCAGAAt                                       <  1:2142418/100‑1 (MQ=255)
                                                           gaagaaACTACCACATCGTCCATCGACAGGGTAAAGCTGAACACCCAGCCCGCCGCCACCGCTGGCATTGCCAGTGGCAGAATGATTTTTCGCAGAATgg                                     <  2:1717040/100‑1 (MQ=255)
                                                           gaagaaACTACCACATCGTCCATCGACAGGGTAAAGCTGAACACCCAGCCCGCCGCCACCGCTGGCATTGCCAGTGGCAGAATGATTTTTCGCAGAATgg                                     >  1:3720623/1‑100 (MQ=255)
                                                           gaagaaACTACCACATCGTCCATCGACAGGGTAAAGCTGAACACCCAGCCCGCCGCCACCGCTGGCATTGCCAGTGGCAGAATGATTTTTCGCAGAATgg                                     <  1:2056130/100‑1 (MQ=255)
                                                           gaagaaACTACCACATCGTCCAGCGACAGGGTAAAGCTGAACACCCAGCCCGCCGCCACCGCTGGCATTGCCAGTGGCAGAATGATTTTTCGCAGAATgg                                     <  2:3871130/100‑1 (MQ=255)
                                                            aagaaACTACCACATCGTCCATCGACAGGGTAAAGCTGAACACCCAGCCCGCCGCCACCGCTGGCATTGCCAGTGGCAGAATGATTTTTCGCAGAATGGt                                    >  1:4049661/1‑100 (MQ=255)
                                                            aagaaACTACCACATCGTCCATCGACAGGGTAAAGCTGAACACCCAGCCCGCCGCCACCGCTGGCATTGCCAGTGGCAGAATGATTTTTCGCAGAATGGt                                    >  2:3413101/1‑100 (MQ=255)
                                                             agaaACTACCACATCGTCCATCGACAGGGTAAAGCTGAACACCCAGCCCGCCGCCACCGCTGGCATTGCCAGTGGCAGAATGATTTTTCGCAGAATGGTa                                   >  2:3287166/1‑100 (MQ=255)
                                                              gaaACTACCACATCGTCCATCGACAGGGTAAAGCTGAACACCCAGCCCGCCGCCACCGCTGGCATTGCCAGTGGCAGAATGATTTTTCGCAGAATGGTaa                                  >  2:3732553/1‑100 (MQ=255)
                                                                  cTACCACATCGTCCATAGACAGGGTAAAGCTGAACACCCAGCCCGCCGCCACCGCTGGCATTGCCAGTGGCAGAATGATTTTTCGTTGTTTGTTAAATTc                              >  2:5327633/1‑100 (MQ=255)
                                                                     ccACATCGTCCATCGACAGGGTAAAGCTGAACACCCAGCCCGCCGCCACCGCTGGCATTGCCAGTGGCAGAATGATTTTTCGCAGAATGGTAAATTCGCt                           <  1:5166155/100‑1 (MQ=255)
                                                                     ccACATCGTCCATCGACAGGGTAAAGCTGAACACCCAGCCCGCCGCCACCGCTGGCATTGCCAGTGGCAGAATGATTTTTCGCAGAATGGTAAATTCGCt                           <  1:3481935/100‑1 (MQ=255)
                                                                      cacaTCGTCCATCGACAGGGTAAAGCTGAACACCCAGCCCGCCGCCACCGCTGGCATTGCCAGTGGCAGAATGATTTTTCGCAGAATGGTAAATTCGCTg                          <  1:281009/100‑1 (MQ=255)
                                                                      cacaGCGTCCATCGACAGGGGAAAGCTGAACACCCAGCCCGCCGCCACCGCTGGCATTGCCAGTGGCAGAGTGATTTTTCGCAGAATGGTAAATTCCCTg                          <  2:2559699/100‑1 (MQ=255)
                                                                       acaTCTTCCATCGACAGGGTAAAGCTGAACACCCAGCCCGCCGCCACCGCCGGCATCGCCAGTGGCAGAATGATTTTTCGCAGAATGGTAAATTCGCTgg                         >  1:2953550/1‑100 (MQ=255)
                                                                       acaTCGTCCATCGACAGGGTAAAGCTGAACACCCAGCCCGCCGCCACCGCTGGCATTGCCAGTGGCAGAATGATTTTTCGCAGAATGGTAAATTCGCTgg                         <  1:686732/100‑1 (MQ=255)
                                                                       acaTCGTCCATCGACAGGGTAAAGCTGAACACCCAGCCCGCCGCCACCGCTGGCATTGCCAGTGGCAGAATGATTTTTCGCAGAATGGTAAATTCGCTgg                         <  2:4342632/100‑1 (MQ=255)
                                                                        caTCGTCCATCGACAGGGTAAAGCTGAACACCCAGCCCGCCGCCACCGCTGGCATTGCCAGTGGCAGAATGATTTTTCGCAGAATGGTAAATTCGCTGGc                        <  1:635752/100‑1 (MQ=255)
                                                                           cGTCCATCGACAGGGTAAAGCTGAACACCCAGCCCGCCGCCACCGCTGGCATTGCCAGTGGCAGAATGATTTTTCGCAGAATGGTAAATTCGCTGGCAcc                     <  1:5453277/100‑1 (MQ=255)
                                                                               cATCGACAGGGTAAAGCTGAACACCCAGCCCGCCGCCACCGCTGGCATTGCCAGTGGCAGAATGATTTTTCGCAGAATGGTAAATTCGCTGGCACCgaga                 <  2:2219399/100‑1 (MQ=255)
                                                                                aTCGACAGGGTAAAGCTGAACACCCAGCCCGCCGCCACCGCTGGCATTGCCAGTGGCAGAATGATTTTTCGCAGAATGGTAAATTCGCTGGCACCGAGAt                >  1:687552/1‑100 (MQ=255)
                                                                                  cGACAGGGTAAAGCTGAACACCCAGCCCGCCGCCACCGCTGGCATTGCCAGTGGCAGAATGATTTTTCGCAGAATGGTAAATTCGCTGGCACCGAGATCt              <  1:3245828/100‑1 (MQ=255)
                                                                                  cGACAGGGTAAAGCTGAACACCCAGCCCGCCGCCACCGCTGGCATTGCCAGTGGCAGAATGATTTTTCGCAGAATGGTAAATTCGCTGGCACCGAGATCt              >  1:2737621/1‑100 (MQ=255)
                                                                                  cGACAGGGTAAAGCTGAACACCCAGCCCGCCGCCACCGCTGGCATTGCCAGTGGCAGAATGATTTTTCGCAGAATGGTAAATTCGCTGGCACCGAGATCt              >  1:5014619/1‑100 (MQ=255)
                                                                                   gACAGGGTAAAGCTGAACACCCAGCCCGCCGCCACCGCTGGCATTGCCAGTGGCAGAATGATTTTTCGCAGAATGGTAAATTCGCTGGCACCGAGATCtt             >  1:3385360/1‑100 (MQ=255)
                                                                                    aCAGGGTAAAGCTGAACACCCAGCCCGCCGCCACCGCTGGCATTGCCAGTGGCAGAATGATTTTTCGCAGAATGGTAAATTCGCTGGCACCGAGATCttt            >  2:1299085/1‑100 (MQ=255)
                                                                                    aCAGGGTAAAGCTGAACACCCAGCCCGCCGCCACCGCTGGCATTGCCAGTGGCAGAATGATTTTTCGCAGAATGGTAAATTCGCTGGCACCGAGATCttt            >  2:595548/1‑100 (MQ=255)
                                                                                       gggTAAAGCTGAACACCCAGCCCGCCGCCACCGCTGGCATTGCCAGTGGCAGAATGATTTTTCGCAGAATGGTAAATTCGCTGGCACCGAGATCTTTcgc         <  1:2646178/100‑1 (MQ=255)
                                                                                       gggTAAAGCTGAACACCCAGCCCGCCGCCACCGCTGGCATTGCCAGTGGCAGAATGATTTTTCGCAGAATGGTAAATTCGCTGGCACCGAGATCTTTcgc         <  2:2648681/100‑1 (MQ=255)
                                                                                       gggTAAAGCTGAACACCCAGCCCGCCGCCACCGCTGGCATTGCCAGTGGCAGAATGATTTTTCGCAGAATGGTAAATTCGCTGGCACCGAGATCTTTcgc         >  1:3052813/1‑100 (MQ=255)
                                                                                       gggTAAAGCTGAACACCCAGCCCGCCGCCACCGCTGGCATTGCCAGTGGCAGAATGATTTTTCGCAGAATGGTAAATTCGCTGGCACCGAGATCTTTcgc         <  2:2991211/100‑1 (MQ=255)
                                                                                       gggTAAAGCTGAACACCCAGCCCGCCGCCACCGCTGGCATTGCCAGTGGCAGAATGATTTTTCGCAGAATGGTAAATTCGCTGGCACCGAGATCTTTcgc         >  2:5177094/1‑100 (MQ=255)
                                                                                        ggTAAAGCTGAACACCCAGCCCGCCGCCCCCGCTGGCATTGCCAGTGGCAGAATGATTTTTCGTATAATGGTAAATTCGCTGGCACCGAGATCTTTcgcc        <  2:955966/100‑1 (MQ=255)
                                                                                        ggTAAAGCTGAACACCCAGCCCGCCGCCACCGCTGGCATTGCCAGTGGCAGAATGATTTTTCGCAGAATGGTAAATTCGCTGGCACCGAGATCTTTcgcc        <  2:4164016/100‑1 (MQ=255)
                                                                                        ggTAAAGCTGAACACCCAGCCCGCCGCCACCGCTGGCATTGCCAGTGGCAGAATGATTTTTCGCAGAATGGTAAATTCGCTGGCACCGAGATCTTTcgcc        >  1:3704609/1‑100 (MQ=255)
                                                                                         gTAAAGCTGAACACCCAGCCCGCCGCCACCGCTGGCATTGCCAGTGGCAGAATGATTTTTCGCAGAATGGTAAATTCGCTGGCACCGAGATCTTTcgccg       >  2:372284/1‑100 (MQ=255)
                                                                                          tAAAGCTGAACACCCAGCCCGCCGCCACCGCTGGCATTGCCAGTGGCAGAATGATTTTTCGCAGAATGGTAAATTCGCTGGCACCGAGATCTTTcgccgc      >  2:2898252/1‑100 (MQ=255)
                                                                                           aaaGCTGAACACCCAGCCCGCCGCCACCGCTGGCATTGCCAGTGGCAGAATGATTTTTCGCAGAATGGTAAATTCGCTGGCACCGAGATCTTTCGCCGCt     <  2:3716065/100‑1 (MQ=255)
                                                                                            aaGCTGAACACCCAGCCCGCCGCCACCGCTGGCATTGCCAGTGGCAGAATGATTTTTCGCAGAATGGTAAATTCGCTGGCACCGAGATCTTTCGCCGCtt    >  2:4816620/1‑100 (MQ=255)
                                                                                            aaGCTGAACAACCAGCACGCCGCCACCGCTGGCATTGCCAGTGGCAGAATGATTTTTCGCAGAATGGTAAATTCGCTGGTACCGAGATCTTTCGCCGCtt    >  1:4878032/1‑100 (MQ=255)
                                                                                             aGCTGAACACCCAGCCCGCCGCCACCGCTGGCATTGCCAGTGGCAGAATGATTTTTCGCAGAATGGTAAATTCGCTGGCACCGAGATCTTTCGCCGCTTc   <  1:3710552/100‑1 (MQ=255)
                                                                                             aGCTGAACACCCAGCCCGCCGCCACCGCTGGCATTGCCAGTGGCAGAATGATTTTTCGCAGAATGGTAAATTCGCTGGCACCGAGATCTTTCGCCGCTTc   >  1:4120287/1‑100 (MQ=255)
                                                                                              gCTGAACACCCAGCCCGCCGCCACCGCTGGCATTGCCAGTGGCAGAATGATTTTTCGCAGAATGGTAAATTCGCTGGCACCGAGATCTTTCGCCGCTTcc  >  1:3806451/1‑100 (MQ=255)
                                                                                                 |                                                                                                
CTTTGACCATCGAATAAATTTTTAACGGCAGAATTTCATAACTTGGTCCGGTGACGAACGAAGAAACTACCACATCGTCCATCGACAGGGTAAAGCTTAACACCCAGCCCGCCGCCACCGCTGGCATTGCCAGTGGCAGAATGATTTTTCGCAGAATGGTAAATTCGCTGGCACCGAGATCTTTCGCCGCTTCC  >  NC_000913/1182951‑1183144

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A