Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A6 F406 I3 R1
|
15 |
135.2 |
6912603 |
92.5% |
6394157 |
99.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
354,812 |
C→T |
intergenic (+220/‑110) |
prpE → / → codB |
propionate‑‑CoA ligase/cytosine transporter |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 354,812 | 0 | C | T | 99.3%
| 436.7
/ ‑4.7
| 139 | intergenic (+220/‑110) | prpE/codB | propionate‑‑CoA ligase/cytosine transporter |
| Reads supporting (aligned to +/- strand): ref base C (0/1); new base T (60/78); total (60/79) |
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.10e-01 |
Only 100 of 147 total aligned reads displayed.
CCGACACCATGCTCAGATGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACCCACTGTTTTTACACCGATAATTTTTCCCCCACCTTTTTGCACTCATTCATATAAAAAATATATTTCCCCACGAAAACGATTGCTTTTTATCTTCAGATGAATAGAATGCGGCGGATTTTTTGGGTTTCAAACAGCAA > NC_000913/354716‑354907
|
ccGACACCATGCTCAGATGCCTGATGCGACGCTGACGCGTCTTATCCGGCCTACCCACTGTTTTTACACCGATAATTTTTCCCCCACCTTTTTGCATtc > 1:21742/1‑99 (MQ=255)
cGACACCATGCTCAGATGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACCCACTGTTTTTACACCGATAATTTTTCCCCCACCTTTTTGCATtca > 2:190318/1‑99 (MQ=255)
gACACCATGCTCAGATGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACCCACTGTTTTTACACCGATAATTTTTCCCCCACCTTTTTtcattcat > 2:2169619/1‑99 (MQ=255)
gACACCATGCTCAGATGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACCCACTGTTTTTACACCGATAATTTTTCCCCCACCTTTTTGCATtcat > 1:1014246/1‑99 (MQ=255)
gACACCATGCTCAGATGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACCCACTGTTTTTACACCGATAATTTTTCCCCCACCTTTTTGCATtcat > 1:2884153/1‑99 (MQ=255)
gACACCATGCTCAGATGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACCCACTGTTTTTACACCGATAATTTTTCCCCCACCTTTTTGCATtcat > 1:2609204/1‑99 (MQ=255)
gACACCATGCTCAGATGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACCCACTGTTTTTACACCGATAATTTTTCCCCCACCTTTTTGCATtcat < 2:2986694/99‑1 (MQ=255)
cacCATGCTCAGATGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACCCACTGTTTTTACACCGATAATTTTTCCCCCACCTTTTTGCattcattc < 1:110820/99‑1 (MQ=255)
cacCATGCTCAGATGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACCCACTGTTTTTACACCGATAATTTTTCCCCCACCTTTTTGCattcattc > 1:2378981/1‑99 (MQ=255)
acCATGCTCAGATGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACCCACTGTTTTTACACCGATAATTTTTCCCCCACCTTTTTGCCttcattca > 2:1246705/1‑99 (MQ=255)
acCATGCTCAGATGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACCCACTGTTTTTACACCGATAATTTTTCCCCCACCTTTTTGCAttcattca < 1:2741272/99‑1 (MQ=255)
acCATGCTCAGATGCCTGATGCGACGCTGACGCGTCTTATCACGCCTACCCACTCTTTTTACACCGATACTTTTTCCCCCACCTTTTTGCAttcattca < 1:3025060/99‑1 (MQ=37)
ccATGCTCAGATGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACCCACTGTTTTTACACCGATAATTTTTCCCCCACCTTTTTGCATtcattcat < 2:2654389/99‑1 (MQ=255)
cATGCTCAGATGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACCCACTGTTTTTACACCGATAATTTTTCCCCCACCTTTTTGCATTCATTCata > 2:718109/1‑99 (MQ=255)
cATGCTCAGATGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACCCACTGTTTTTACACCGATAATTTTTCCCCCACCTTTTTGCATTCATTCata > 1:2143910/1‑99 (MQ=255)
cATGCTCAGATGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACCCACTGTTTTTACACCGATAATTTTTCCCCCACCTTTTTGCATTCATTCata > 1:2009985/1‑99 (MQ=255)
aTGCTCAGATGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACCCACTGTTTTTACACCGATAATTTTTCCCCCACCTTTTTGCATTCATTCatat > 2:1989918/1‑99 (MQ=255)
gCTCAGATGCCTGCTGCGCCGCTGACGCCTCTTATCAGGCCTACCCACTGTTTTTACACCGATAATTTTTCCCCCACCTTTTTTCCTTCATTCatatca > 2:3269795/1‑97 (MQ=37)
cAGATGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACCCACTGTTTTTACACCGATAATTTTTCCCCCACCTTTTTGCATTCATTCATATaaaaa < 2:1671225/99‑1 (MQ=255)
gATGCCTGATGCGACGCTGACGCGTCTAAAAACGCCTATCCACTGTTTTTACACCTATAATTTTTCCCCCACCTTTTTACATTCATTCATATAAAAAat < 2:1997837/99‑1 (MQ=37)
tGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACCCACTGTTTTTACACCGATAATTTTTCCCCCACCTTTTTGCATTCATTCATATAAAAAatat < 2:733462/99‑1 (MQ=255)
agCCTGATGCGACGCTGACGCCTCTGATCAGGCCTCGCCACTGTTTTTACACCTATAATTTTTCCCCCACCTTTTTGCATTCATTCATAGAAAAAatat < 2:3239956/98‑1 (MQ=37)
gCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACCCACTGTTTTTACACCGATAATTTTTCCCCCACCTTTTTGCATTCATTCATATAAAAAatata < 1:2053179/99‑1 (MQ=255)
ccTGATGCGACGATGACGCGTCTTATCAGGCCTACCCACTGTTTTTACACCGATAATTTTTCCCCCACCTATTTGCATTCATTCATATAAAAActctat > 2:1761569/1‑99 (MQ=38)
tGATGCGACGCTGACGCGTCTTATCAGGCCTACCCACTGTTTTTACACCGATAATTTTTCCCCCACCTTTTTGCATTCATTCATATAAAAAATATAttt < 1:550854/99‑1 (MQ=255)
tGATGCGACGCTGACGCGTCTTATCAGGCCTACCCACTGTTTTTACACCGATAATTTTTCCCCCACCTTTTTGCATTCATTCATATAAAAAATATAttt > 1:1155658/1‑99 (MQ=255)
tGATGCGACGCTGACGCGTCTTATCAGGCCTACCCACTGTTTTTACACCGATAATTTTTCCCCCACCTTTTTGCATTCATTCATATAAAAAATATAttt > 1:112718/1‑99 (MQ=255)
gATGCGACGCTGACGCGTCTTATCAGGCCTACCCACTGTTTTTACACCGATAATTTTTCCCCCACCTTTTTGCATTCATTCATATAAAAAATATATTTc > 1:342712/1‑99 (MQ=255)
gATGCGACGCTGACGCGTCTTATCAGGCCTACCCACTGTTTTTACACCGATAATTTTTCCCCCACCTTTTTGCATTCATTCATATAAAAAATATATTTc > 2:812949/1‑99 (MQ=255)
gATGCGACGCTGACGCGTCTTATCAGGCCTACCCACTGTTTTTACACCGATAATTTTTCCCCCACCTTTTTGCATTCATTCATATAAAAAATATATTTc < 2:2526723/99‑1 (MQ=255)
aTGCGACGCTGACGCGTCTTATCAGGCCTACCCACTGTTTTTACACCGATAATTTTTCCCCCACCTTTTTGCATTCATTCATATAAAAAATATATTTcc > 1:3026970/1‑99 (MQ=255)
tGCGACGCTGACGCGTCTTATCAGGCCTACCCACTGTTTTTACACCGATGATTTTTCCCCCACCTTTTTGCATTCATTCATATAAAAAATATATTTccc < 1:3236301/99‑1 (MQ=255)
tGCGACGCTGACGCGTCTTATCAGGCCTACCCACTGTTTTTACACCGATAATTTTTCCCCCACCTTTTTGCATTCATTCATATAAAAAATATATTTccc < 2:2844645/99‑1 (MQ=255)
gACGCTGACGCGTCTTATCAGGCCTACCCACTGTTTTTACACCGATAATTTTTCCCCCACCTTTTTGCATTCATTCATATAAAAAATATATTTCCCCAc > 1:2660626/1‑99 (MQ=255)
cTGACGCGTCTTATCAGGCCTACCCACTGTTTTTACACCGATAATTTTTCCCCCACCTTTTTTTTTTTTTTTTTATAAAAAATACATTTCCCCACGaaa > 2:2823911/1‑99 (MQ=255)
cTGACGCGTCTTATCAGGCCTACCCACTGTTTTTACACAGATAATTTTTCCCCCCCCTCTTTGCATTCATTGATATAAAAAATATATTTCCCCAAGaaa > 2:3273414/1‑99 (MQ=255)
tGACGCGTCTTATCAGGCCTACCCACTGTTTTTACACCGATAATTTTTCCCCCACCTTTTTGCATTCATTCATATAAAAAATATATTTCCCCACGaaaa < 1:2406029/99‑1 (MQ=255)
aCGCGTCTTATCAGGCCTACCCACTGTTTTTACACCGATAATTTTTCCCCCACCTTTTTGCTTTCTTTTATATAAAAAATATATTTCCCCACGAAAACg > 2:2186159/1‑99 (MQ=255)
cgcgTCTTATCAGGCCTACCCACTGTTTTTACACCGATAATTTTTCCCCCACCTTTTTGCATTCATTCATATAAAAAATATATTTCCCCACGAAAACGa > 1:1483795/1‑99 (MQ=255)
gcgTCTTATCAGGCCTACCCACTGTTTTTACACCGATAATTTTTCCCCCACCTTTTTGCATTCATTCATATAAAAAATATATTTCCCCACGAAAACGAt < 1:615076/99‑1 (MQ=255)
gcgTCTTATCAGGCCTACCCACTGTTTTTACACCGATAATTTTTCCCCCACCTTTTTGCATTCATTCATATAAAAAATATATTTCCCCACGAAAACGAt > 1:136314/1‑99 (MQ=255)
cgTCTTATCAGGCCTACCCACTGTTTTTACACCGATAATTTTTCCCCCACCTTTTTGCATTCATTCATATAAAAAATATATTTCCCCACGAAAACGAtt < 2:676725/99‑1 (MQ=255)
ttATCAGGCCTACCCACTGTTTTTACACCGATAATTTTTCCCCAACCTTTTTGCATTCATTCATATAAAAAATATATTTCCCCACGAAAACGATTGCtt < 1:2112078/99‑1 (MQ=255)
tATCAGGCCTACCCACTGTTTTTACACCGATAATTTTTCCCCCACCTTTTTGCATTCATTCATATAAAAAATATATTTCCCCACGAAAACGATTGCttt > 1:1530133/1‑99 (MQ=255)
aTCAGGCCTACCCACTGTGTTTACACCGATAATTTTTCCCCAACCTTTTTGCATTCATTCATATAAAAAATATATTTCCCCACGAAAACGATTGCtttt < 2:3404328/99‑1 (MQ=255)
tCAGGCCTACCCACTGTTTTTACACCGATAATTTTTCCCCCACCTTTTTGCATTCATTCATATAAAAAATATATTTCCCTATGAAAACTATTGCttttt < 2:920431/99‑1 (MQ=255)
ggCCTACCCACTGTTTTTACACCGATAATTTTTCCCCCACCTTTTTGCATTCATTCATATAAAAAATATATTTCCCCACGAAAACGATTGCTTTTTATc > 1:511134/1‑99 (MQ=255)
ccTACCCACTGTTTTTACACCGATAATTTTTCCCCCACCTTTTTGCATTCATTCATATAAAAAATATATTTCCCCACGAAAACGATTGCTTTTTATCtt < 2:268249/99‑1 (MQ=255)
cTACCCACTGTTTTTACACCGATAATTTTTCCCCCACCTTTTTGCATTCATTCATATAAAAAATATATTTCCCCACGAAAACGATTGCTTTTTATCTTc < 1:1034923/99‑1 (MQ=255)
tACCCACTGTTTTTACACCGATACTTTTTCCCCCACCTTTTTGCATTCATTCATATAAAAAATATATTTCCCCACGAAAACGATTGCTTTTTATCTTCa < 2:1808929/99‑1 (MQ=255)
tACCCACTGTTTTTACACCGATAATTTTTCCCCCACCTTTTTGCATTCATTCATATAAAAAATATATTTCCCCACGAAAACGATTGCTTTTTATCTTCa < 1:1129236/99‑1 (MQ=255)
tACCCACTGTTTTTACACCGATAATTTTTCCCCCACCTTTTTGCATTCATTCATATAAAAAATATATTTCCCCACGAAAACGATTGCTTTTTATCTTCa < 1:3080748/99‑1 (MQ=255)
tACCCACTGTTTTTACACCGATAATTTTTCCCCCACCTTTTTGCACTCATTCATATAAAAAATATATTTCCCCACGAAAACGATTGCTTTTTATCTTCa < 1:165664/99‑1 (MQ=255)
cccACTGTTTTTACACCGATAATTTTTCCCCCACCTTTTTGCATTCATTCATATAAAAAATATATTTCCCCACGAAAACGATTGCTTTTTATCTTCAGa < 1:1281785/99‑1 (MQ=255)
cccACTGTTTTTACACCGATAATTTTTCCCCCACCTTTTTGCATTCATTCATATAAAAAATATATTTCCCCACGAAAACGATTGCTTTTTATCTTCAGa > 2:1428581/1‑99 (MQ=255)
cccACTGTTTTTACACCGATAATTTTTCCCCCACCTTTTTGCATTCATTCATATAAAAAATATATTTCCCCACGAAAACGATTGCTTTTTATCTTCAGa < 1:3364706/99‑1 (MQ=255)
ccACTGTTTTTACACCGATAATTTTTCCCCCACCTTTTTGCATTCATTCATATAAAAAATATATTTCCCCACGAAAACGATTGCTTTTTATCTTCAGAt < 1:2205386/99‑1 (MQ=255)
ccACTGTTTTTACACCGATAATTTTTCCCCCACCTTTTTGCATTCATTCATATAAAAAATATATTTCCCCACGAAAACGATTGCTTTTTATCTTCAGAt > 2:2375995/1‑99 (MQ=255)
cACTGTTTTTACACCGATAATTTTTCCCCCACCTTTTTGCATTCATTCATATAAAAAATATATTTCCCCACGAAAGCGATGGCTTTTTATCTTCAGATg > 1:1332752/1‑99 (MQ=255)
aCTGTTTTTACACCGATAATTTTTCCCCCACCTTTTTGCATTCATTCATATAAAAAATATATTTCCCCACGAAAACGATTGCTTTTTATCTTCAGATGa > 1:962306/1‑99 (MQ=255)
cTGTTTTTACACCGATAATTTTTTTTTTTTTTTTTTGCATTCATTCATATAAAAAATATATTTCCCCACGAAAACGATTGCTTTTTATCTTCAGATGaa > 2:461403/1‑99 (MQ=255)
cTGTTTTTACACCGATAATTTTTCCCCCACCTTTTTGCATTCATTCATATAAAAAATATATTTCCCCACGAAAACGATTGCTTTTTATCTTCAGATGaa < 2:1036881/99‑1 (MQ=255)
gTTTTTACACCGATAATTTTTCCCCCACCTTTTTGCATTCATTCATATAAAAAATATATTTCCCCACGAAAACGATTGCTTTTTATCTTCAGATGAATa < 2:912278/99‑1 (MQ=255)
gTTTTTACACCGATAATTTTTCCCCCACCTTTTTGCATTCATTCATATAAAAAATATATTTCCCCACGAAAACGATTGCTTTTTATCTTCAGATGAATa < 2:2732001/99‑1 (MQ=255)
gTTTTTACACCGATAATTTTTCCCCCACCTTTTTGCATTCATTCATATAAAAAATATATTTCCCCACGAAAACGATTGCTTTTTATCTTCAGATGAATa > 1:1507529/1‑99 (MQ=255)
ttttACACCGATAATTTTTCCCCCACCTTTTTGTATTCATTCATATAAAAAATATATTTCCCCACGAAAACGATTGCTTTTTATCTTCAGATGAATAGa > 2:1449600/1‑99 (MQ=255)
tttACACCGATAATTTTTCCCCCACCTTTTTGCATTCATTCATATAAAAAATATATTTCCCCACGAAAACGATTGCTTTTTATCTTCAGATGAATAGaa < 1:2561179/99‑1 (MQ=255)
tttACACCGATAATTTTTCCCCCACCTTTTTGCATTCATTCATATAAAAAATATATTTCCCCACGAAAACGATTGCTTTTTATCTTCAGATGAATAGaa < 1:2561226/99‑1 (MQ=255)
ttACACCGATTATTTTTCCCCCACCTTTTTGCATTCATTCATATAAAAAATATATTTCCCCACGAAAACGATTGCTTTTTATCTTCAGATGAATAGAAt < 1:1925442/99‑1 (MQ=255)
tACACCGATAATTTTTCCCCCACCTTTTTGCATTCATTCATATAAAAAATATATTTCCCCACGAAAACGATTGCTTTTTATCTTCAGATGAATAGAATg < 2:1568662/99‑1 (MQ=255)
cacCGATAATTTTTCCCCCACCTTTTTGCATTCATTCATATAAAAAATATATTTCCCCACGAAAACGATTGCTTTTTATCTTCAGATGAATAGAATgcg > 1:916104/1‑99 (MQ=255)
acCGATAATTTTTCCCCCCCCTTTTTGCATTCATTCATATAAAAAATATATTTCCCCACGAAAACGATTGCTTTTTATCTTCAGATGAATAGAATgcgg < 1:1480476/99‑1 (MQ=255)
acCGATAATTTGTCCCCCACCGTTTTGCATTCATTCAGATAAAAAATATATTTCCCCACGAAAACGATTTCTGTTTATCTTCAGATGAATAGAATgcga > 2:685068/1‑98 (MQ=255)
ccGATAATTTTTCCCCCACCTTTTTGCATTCATTCATATAAAAAATATATTTCCCCACGAAAACGATTGCTTTTTATCTTCAGATGAATAGAATgcggc < 2:2292209/99‑1 (MQ=255)
gATAATTTTTCCGCAACAATTTTGGATTCTTTTATATAAAAACTATATTTCTCCCCGACAACGATTGCTTTTTATCTTCCGATGACTAGAATGtggcgg > 2:242455/1‑99 (MQ=255)
gATAATTTTTCCCCCACCTTTTTGCATTCATTCATATAAAAAATATATTTCCCCACGAAAACGATTGCTTTTTATCTTCAGATGAATAGAATGcggcgg > 2:3179693/1‑99 (MQ=255)
aTAATTTTTCCCCCACCTTTTTTTTTTTTTTTTTATAAAAAATATATTTCCCCACGAATATGATTGCTTTTTATCTTCAGATGAATAGAATGCGGCGGa > 2:3356342/1‑99 (MQ=255)
aTAATTTTTCCCCCACCTTTTTGCATTCATTCATATAAAAAATATATTTCCCCACGAAAACGATTGCTTTTTATCTTCAGATGAATAGAATGCGGCGGa > 2:1628578/1‑99 (MQ=255)
tttttCCCCCACCTTTTTTCATTCTTTTATATAAAAAATATATTTCCCCACGAAAACGATTGCTTTTTATCTTCAGATGAATATAATGCGGCGGAtttt > 2:1850082/1‑99 (MQ=255)
tttttCCCCCACCTTTTTGCATTCATTCATATAAAAAATATATTTCCCCACGAAAACGATTGCTTTTTATCTTCAGATGAATAGAATGCGGCGGAtttt > 1:201725/1‑99 (MQ=255)
tttttCCCCCACCTTTTTGCATTCATTCATATAAAAAATATATTTCCCCACGAAAACGATTGCTTTTTATCTTCAGATGAATAGAATGCGGCGGAtttt > 1:2571603/1‑99 (MQ=255)
ttttCCCCCCCCTTTTTGCATTCATTCATATAAAAAATATATTTCCCCACGAAAACGATTGCTTTTTATCTTCAGATGAATAGAATGCGGCGGAttttt < 1:646480/99‑1 (MQ=255)
ttttCCCCCACCTTTTTGCATTCATTCATATAAAAAATATATTTCCCCACGAAAACGATTGCTTTTTATCTTCAGATGAATAGAATGCGGCGGAttttt < 1:1290387/99‑1 (MQ=255)
ttttCCCACACCTTTTTGCATTCATTCATATAAAAAATATATTTCCCCACGAAAACGATTGCTTTTTATCTTCAGATGAATAGAATGCGGCGGAttttt < 2:1851407/99‑1 (MQ=255)
tttCCCCCACCTTTTTGCATTCATTCATATAACAAATATATTTCCCCACGAAAACGATTGCTTTTTATCTTCAGATGAATAGAATGCGGCGGAtttttt < 2:2067043/99‑1 (MQ=255)
tttCCCCCACCTTTTTGCATTCATTCATATAAAAAATATATTTCCCCACGAAAACGATTGCTTTTTATCTTCAGATGAATAGAATGCGGCGGAtttttt < 2:807223/99‑1 (MQ=255)
tttCCCCCACCTTTTTGCATTCATTCATATAAAAAATATATTTCCCCACGAAAACGATTGCTTTTTATCTTCAGATGAATAGAATGCGGCGGAtttttt < 2:1201559/99‑1 (MQ=255)
ttCCCCCACCTTTTTGCATTCATTCATATAAAAAATATATTTCCCCACGAAAACGATTGCTTTTTATCTTCAGATGAATAGAATGCGGCGGATTTTTTg < 2:2442634/99‑1 (MQ=255)
tCCCCCACCTTTTTGCATTCATTCATATAAAGAATATATTTCCCCACGAAAACGATTGCTTTTTATCTTCAGATGAATATAATGCGGCGGATTTTTTgg < 1:1808528/99‑1 (MQ=255)
cccccACCTTTTTGCATTCATTCATATAAAAAATATATTTCCCCACGAAAACGATTGCTTTTTATCTTCAGATGAATAGAATGCGGCGGAttttttttt > 2:1964019/1‑96 (MQ=255)
cccccACCTTTTTGCATTCATTCATATAAAAAATATATTTCCCCACGAAAACGATTGCTTTTTATCTTCAGATGAATAGAATGCGGCGGATTTTTTggg < 1:209593/99‑1 (MQ=255)
ccACCTTTTTGCATTCATTCATATAAAAAATATATTTCCCCACGAAAACGATTGCTTTTTATCTTCAGATGAATAGAATGCGGCGGATTTTTTGGGttt > 1:1444085/1‑99 (MQ=255)
ccACCTTTTTGCATTCATTCATATAAAAAATATATTTCCCCACGAAAACGATTGCTTTTTATCTTCAGATGAATAGAATGCGGCGGATTTTTTGGGttt > 1:3256380/1‑99 (MQ=255)
ccACCTTTTTGCATTCATTCATATAAAAAATATATTTCCCCACGAAAACGATTGCTTTTTATCTTCAGATGAATAGAATGCGGCGGATTTTTTGGGttt > 2:1607001/1‑99 (MQ=255)
cACCTTTTTGCATTCATTCATATAAAAAATATATTTCCCCACGAAAACGATTGCTTTTTATCTTCAGATGAATAGAATGCGGCGGATTTTTTGGGTTTc < 1:3180884/99‑1 (MQ=255)
cACCTTTTTGCATTCATTCATATAAAAAATATATTTCCCCACGAAAACGATTGCTTTTTATCTTCAGATGAATAGAATGCGGCGGATTTTTTGGGTTTc < 1:2799649/99‑1 (MQ=255)
aCCTTTTTGCATTCATTCATATAAAAAATATATTTCCCCACGAAAACGATTGCTTTTTATCTTCAGATGAATAGAATGCGGCGGATTTTTTGGGTTTCa < 2:358352/99‑1 (MQ=255)
cTTTTTGCATTCATTCATATAAAAAATATATTTCCCCACGAAAACGATTGCTTTTTATCTTCAGATGAATAGAATGCGGCGGATTTTTTGGGTTTCaaa < 2:2732229/99‑1 (MQ=255)
cTTTTTGCATTCATTCATATAAAAAATATATTTCCCCACGAAAACGATTGCTTTTTATCTTCAGATGAATAGAATGCGGCGGATTTTTTGGGTTTCaaa < 2:2522002/99‑1 (MQ=255)
ttGCATTCATTCATATAAAAAATATATTTCCCCACGAAAACGATTGCTTTTTATCTTCAGATGAATAGAATGCGGCGGATTTTTTGGGTTTCAAACAGc < 1:1172078/99‑1 (MQ=255)
|
CCGACACCATGCTCAGATGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACCCACTGTTTTTACACCGATAATTTTTCCCCCACCTTTTTGCACTCATTCATATAAAAAATATATTTCCCCACGAAAACGATTGCTTTTTATCTTCAGATGAATAGAATGCGGCGGATTTTTTGGGTTTCAAACAGCAA > NC_000913/354716‑354907
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
