Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A6 F406 I3 R1
|
15 |
135.2 |
6912603 |
92.5% |
6394157 |
99.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| JC JC |
NC_000913 |
1,292,991 |
+T :: IS1 (–) +7 bp |
intergenic (‑69/‑530) |
hns ← / → tdk |
global DNA‑binding transcriptional dual regulator H‑NS/thymidine kinase/deoxyuridine kinase |
|
| |
seq id |
position |
reads (cov) |
reads (cov) |
score |
skew |
freq |
annotation |
gene |
product |
| * |
? |
NC_000913 |
19795 = | NA (NA) | 117 (0.890) |
84/192 |
0.2 |
100% |
intergenic (+175/+16) |
nhaR/insB1 |
transcriptional activator of nhaA/IS1 transposase B |
| ? | NC_000913 |
= 1292997 |
0 (0.000) | intergenic (‑75/‑530) |
hns/tdk |
global DNA‑binding transcriptional dual regulator H‑NS/thymidine kinase/deoxyuridine kinase |
| * |
? |
NC_000913 |
= 291401 | NA (NA) | 105 (0.780) |
71/196 |
0.8 |
100% |
noncoding (1/768 nt) |
IS1 |
repeat region |
| ? | NC_000913 |
1292991 = |
0 (0.000) | intergenic (‑69/‑536) |
hns/tdk |
global DNA‑binding transcriptional dual regulator H‑NS/thymidine kinase/deoxyuridine kinase |
Only 100 of 126 total aligned reads displayed.
GAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCAgc‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/19892‑19795
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GCTATTGCACAACTGAATTTAAGGCTCTATTATTACCTCAACAAACCACCCCAATATAAGTTTGAGATTACTACAATGAGCGAAGCACTTAAAATTCTG < NC_000913/1292997‑1292899
GAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAGAACACTATCAATAAGTTGGAGTCATTACCAG < 2:865643/99‑1
GAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCAG < 1:3479633/99‑1
AAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCAGC > 1:1015396/1‑99
AAGTCGCTGTCGATCTCAAAATCGGTGCAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCAGC > 1:3058612/1‑99
TCGCTGTCGTTCTCAAAAACGGTGGAGCTGCATGACAAAGTCATCAGGCATTATCTGAACATCAGGCACCATCAATAAGTTGGAGTCATTACCAGCTAT < 2:516620/99‑1
GCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCAGCTATTG < 2:2581569/99‑1
GTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCAGCTATTGCAC < 2:1505222/99‑1
GTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCAGCTATTGCAC > 1:3309595/1‑99
TCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCAGCTATTGCACA > 1:1851502/1‑99
CGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCAGCTATTGCACAA < 1:996511/99‑1
GTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCAGCTATTGCACAAC > 2:1778775/1‑99
TTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCAGCTATTGCACAACT > 2:1284358/1‑99
TCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCAGCTATTGCACAACTG > 2:2297116/1‑99
tccAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCAGCTATTGCACAACTGAA > 2:1845315/4‑99
TCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCAGCTATTGCACAACTGAA < 1:346512/99‑1
AAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCAGCTATTGCACAACTGAATT > 1:2842415/1‑99
AAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTAGCGTCATTACCAGCTATTGCACAACTGAATT > 1:3177216/1‑99
AATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCAGCTATTGCACAACTGAATTTA < 1:29557/99‑1
AATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCAGCTATTGCACAACTGAATTTA > 2:2542240/1‑99
ATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCAGCTATTGCACAACTGAATTTAA < 1:2313272/99‑1
ATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCAGCTATTGCACAACTGAATTTAA < 1:2403031/99‑1
GGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCAGCTATTGCACAACTGAATTTAAGGC > 2:43244/1‑99
GGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCAGCTATTGCACAACTGAATTTAAGGC < 1:1269726/99‑1
GTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCAGCTATTGCACAACTGAATTTAAGGCT > 1:875438/1‑99
GTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCAGCTATTGCACAACTGAATTTAAGGCT > 1:1221693/1‑99
GTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCAGCTATTGCACAACTGAATTTAAGGCT < 2:622248/99‑1
GTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCAGCTATTGCACAACTGAATTTAAGGCT > 1:153680/1‑99
TGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCAGCTATTGCACAACTGAATTTAAGGCTC > 1:2434197/1‑99
GGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCAGCTATTGCACAACTGAATTTAAGGCTCT < 1:2952246/99‑1
cCTGCATGACCAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGGCATTACCAGCTATTGCACCACTGAATTTAAGGCTCTATT < 2:2063053/98‑1
GCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCAGCTATTGCACAACTGAATTTAAGGCTCTATT > 1:1360259/1‑99
TGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCAGCTATTGCACAACTGAATTTAAGGCTCTATTAT < 2:111654/99‑1
GCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCAGCTATTGCACAACTGAATTTAAGGCTCTATTATT < 1:657229/99‑1
ATGACAAAGTCATCGGGGATTATCTGATCATAAAACACTTTCATTAAGTTGGAGTCATTACCAGCTATTGCACAACTGAATTTAAGGCTCTATTATTAC < 2:2879428/99‑1
TGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCAGCTATTGCACAACTGAATTTAAGGCTCTATTATTACC > 2:2964316/1‑99
GACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCAGCTATTGCACAACTGAATTTAAGGCTCTATTATTACCT < 1:466246/99‑1
GACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCAGCTATTGCACAACTGAATTTAAGGCTCTATTATTACCT < 1:1609732/99‑1
ACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCAGCTATTGCACAACTGAATTTAAGGCTCTATTATTACCTC < 2:1833246/99‑1
ACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCAGCTATTGCACAACTGAATTTAAGGCTCTATTATTACCTC < 1:461596/99‑1
CAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCAGCTATTGCACAACTGAATTTAAGGCTCTATTATTACCTCA > 2:816670/1‑99
AAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCAGCTATTGCACAACTGAATTTAAGGCTCTATTATTACCTCAA < 2:2296574/99‑1
AAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCAGCTATTGCACAACTGAATTTAAGGCTCTATTATTACCTCAAC < 2:2303023/99‑1
AGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCAGCTATTGCACAACTGAATTTAAGGCTCTATTATTACCTCAACA > 1:2221077/1‑99
AGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCAGCTATTGCACAACTGAATTTAAGGCTCTATTATTACCTCAACA > 2:3086272/1‑99
ATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCAGCTATTGCACAACTGCATTTAACGCTCTATTATCACCTCAACAAACC > 2:2682411/1‑99
ATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCAGCTATTGCACAACTGAATTTAAGGCTCTATTATTACCTCAACAAACC > 2:2422072/1‑99
ATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCAGCTATTGCACAACTGAATTTAAGGCTCTATTATTACCTCAACAAACC > 1:710872/1‑99
TCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCAGCTATTGCACAACTGAATTTAAGGCTCTATTATTACCTCAACAAACCA > 2:2994778/1‑99
TCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCAGCTATTGCACAACTGAATTTAAGGCTCTATTATTACCTCAACAAACCA > 2:563138/1‑99
GCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCAGCTATTGCACAACTGAATTTAAGGCTCTATTATTACCTCAACAAACCACCCC > 2:1666919/1‑99
GCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCAGCTATTGCACAACTGAATTTAAGGCTCTATTATTACCTCAACAAACCACCCC > 1:3222387/1‑99
CATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCAGCTATTGCACAACTGAATTTAAGGCTCTATTATTACCTCAACAAACCACCCCA < 1:43835/99‑1
TTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCAGCTATTGCACAACTGAATTTAAGGCTCTATTATTACCTCAACAAACCACCCCAAT < 1:133312/99‑1
TTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCAGCTATTGCACAACTGAATTTAAGGCTCTATTATTACCTCAACAAACCACCCCAAT > 1:2177985/1‑99
ATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCAGCTATTGCACAACTGAATTTAAGGCTCTATTATTACCTCAACAAACCACCCCAATAT > 1:2681398/1‑99
TCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCAGCTATTGCACAACTGAATTTAAGGCTCTATTATTACCTCAACAAACCACCCCAATATA < 1:656039/99‑1
CTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCAGCTATTGCACAACTGAATTTAAGGCTCTATTATTACCTCAACAAACCACCCCAATATAA < 2:3250118/99‑1
GAACATAAAACACTATCAATAAGTTGGAGTCATTACCAGCTATTGCACAACTGAATTTAAGGCTCTATTATTACCTCAACAAACCACCCCAATATAAGT < 1:2032331/99‑1
GAACATAAAACACTATCAATAAGTTGGAGTCATTACCAGCTATTGCACAACTGAATTTAAGGCTCTATTATTACCTCAACAAACCACCCCAATATAAGT > 2:436303/1‑99
ACATAATACACTATCAATAAGTTGGAGTCATTACCAGCTATTGCACAACTGAATTTAAGGCTCTATTATTACCTCAACAAACCACCCCAATATAAGTTT < 1:2691591/99‑1
ACATAAAACACTATCAATAAGTTGGAGTCATTACCAGCTATTGCACAACTGAATTTAAGGCTCTATTATTACCTCAACAAACCACCCCAATATAAGTTT < 1:2693163/99‑1
ATAAAACACTATCAATAAGTTGGAGTCATTACCAGCTATTGCACAACTGAATTTAAGGCTCTATTATTACCTCAACAAACCACCCCAATATAAGTTTGA < 2:2141365/99‑1
ATAAAACACTATCAATAAGGTGGAGTCATTACCAGCTATTGCACAACTGAATTTAAGGCTCTATTATTACCTCAACAAACCACCCCAATATAAGTTTGA > 2:333463/1‑99
TAAAACACTATCAATAAGTTGGAGTCATTACCAGCTATTGCACAACTGAATTTAAGGCTCTATTATTACCTCAACAAACCACCCCAATATAAGTTTGAG > 1:2267005/1‑99
AAACACTATCAATAAGTTGGAGTCATTACCAGCTATTGCACAACTGAATTTAAGGCTCTATTATTACCTCAACAAACCACCCCAATATAAGTTTGAGAT > 2:3127161/1‑99
AAACACTATCAATAAGTTGGAGTCATTACCAGCTATTGCACAACTGAATTTAAGGCTCTATTATTACCTCAACAAACCACCCCAATATAAGTTTGAGAT < 1:1799248/99‑1
AAACACTATCAATAAGTTGGAGTCATTACCAGCTATTGCACAACTGAATTTAAGGCTCTATTATTACCTCAACAAACCACCCCAATATAAGTTTGAGAT > 1:2546397/1‑99
AACACTATCAATAAGTTGGAGTCATTACCAGCTATTGCACAACTGAATTTAAGGCTCTATTATTACCTCAACAAACCACCCCAATATAAGTTTGAGATT > 2:537975/1‑99
ACACTATCAATAAGTTGGAGTCATTACCAGCTATTGCACAACTGAATTTAAGGCTCTATTATTACCTCAACAAACCACCCCAATATAAGTTTGAGATTA > 2:2673598/1‑99
CACTATCAATAAGTTGGAGTCATTACCAGCTATTGCACAACTGAATTTAAGGCTCTATTATTACCTCAACAAACCACCCCAATATAAGTTTGAGATTAC < 1:2078312/99‑1
CTATCAATAAGTTGGAGTCATTACCAGCTATTGCACAACTGAATTTAAGGCTCTATTATTACCTCAACAAACCACCCCAATATAAGTTTGAGATTACTA < 1:2573346/99‑1
CTATCAATAAGTTGGAGTCATTACCAGCTATTGCACAACTGAATTTAAGGCTCTATTATTACCTCAACAAACCACCCCAATATAAGTTTGAGATTACTA < 2:1763367/99‑1
CTATCAATAAGTTGGAGTCATTACCAGCTATTGCACAACTGAATTTAAGGCTCTATTATTACCTCAACAAACCACCCCAATATAAGTTTGAGATTACTA < 2:2311235/99‑1
TATCAATAAGTTGGAGTCATTACCAGCTATTGCACAACTGAATTTAAGGCTCTATTATTACCTCAACAAACCACCCCAATATAAGTTTGAGATTACTAC > 2:23755/1‑99
TCAATAAGTTGGAGTCATTACCAGCTATTGCACAACTGAATTTAAGGCTCTATTATTACCTCAACAAACCACCCCAATATAAGTTTGAGATTACTACAA > 1:3224568/1‑99
TCAATAAGTTGGAGTCATTACCAGCTATTGCACAACTGAATTTAAGGCTCTATTATTACCTCAACAAACCACCCCAATATAAGTTTGAGATTACTACAA < 1:630728/99‑1
TCAAGAAGTTGGAGTCATTACCAGCTATTGCACAACTGAATTTAAGGCTCTATTATTACCTCAACAAACCACCCCAATATAAGTTTGAGATTACTACAA < 1:495668/99‑1
CAATAAGTTGGAGTCATTACCAGCTATTGCACAACTGAATTTAAGGCTCTATTATTACCTCAACAAACCACCCCAATATAAGTTTGAGATTACTACAAT < 1:1866211/99‑1
TAAGTTGGAGTCATTACCAGCTATTGCACAACTGAATTTAAGGCTCTATTATTACCTCAACAAACCACCCCAATATAAGTTTGAGATTACTACAATGAG > 1:2920765/1‑99
AGTTGGAGTCATTACCAGCTATTGCACAACTGAATTTAAGGCTCTATTATTACCTCAACAAACCACCCCAATATAAGTTTGAGATTACTACAATGAGCG < 2:305529/99‑1
GTTGGAGTCATTACCAGCTATTGCACAACTGAATTTAAGGCTCTATTATTACCTCAACAAACCACCCCAATATAAGTTTGAGATTACTACAATGAGCGA < 2:2032438/99‑1
TTGGAGTCATTACCAGCTATTGCACAACTGAATTTAAGGCTCTATTATTACCTCAACAAACCACCCCAATATAAGTTTGAGATTACTACAATGAGCGAA < 1:367899/99‑1
TTGGAGTCATTACCAGCTATTGCACAACTGAATTTAAGGCTCTATTATTACCTCAACAAACCACCCCAATATAAGTTTGAGATTACTACAATGAGCGAA > 2:1896761/1‑99
GGAGTCATTACCAGCTATTGCACAACTGAATTTAAGGCTCTATTATTACCTCAACAAACCACCCCAATATAAGTTTGAGATTACTACAATGAGCGAAGC > 2:1856062/1‑99
AGTCATTACCAGCTATTGCACAACTGAATTTAAGGCTCTATTATTACCTCAGCAAACCACCCCAATATACGTTTGAGATTACTACAAGGAGCGAAGCAC < 2:412259/99‑1
TCATTACCAGCTATTGCACAACTGAATTTAAGGCTCTATTATTACCTCAACAAACCACCCCGATATAAGTTTGAGATTACTACAATGAGCGAAGCACTT > 2:3107772/1‑99
TCATTACCAGCTATTGCACAACTGAATTTAAGGCTCTATTATTACCTCAACAAACCACCCCAATATAAGTTTGAGATTACTACAATGAGCGAAGCACTT > 2:2183353/1‑99
ATTACCAGCTATTGCACAACTGAATTTAAGGCTCTATTATTACCTCAACAAACCACCCCAATATAAGTTTGAGATTACTACAATGAGCGAAGCACTTAA > 2:862890/1‑99
ATTACCAGCTATTGCACAACTGAATTTAAGGCTCTATTATTACCTCAACAAACCACCCCAATATAAGTTTGAGATTACTACAATGAGCGAAGCACTTAA < 2:2519019/99‑1
ATTACCAGCTATTGCACAACTGAATTTAAGGCTCTATTATTACCTCAACAAACCACCCCAATATAAGTTTGAGATTACTACAATGAACGAAGCACTTAA > 2:1402602/1‑99
TTACCAGCTATTGCACAACTGAATTTAAGGCTCTATTATTACCTCAACAAACCACCCCAATATAAGTTTGAGATTACTACAATGAGCGAAGCACTTAAA > 2:3120742/1‑99
TTACCAGCTATTGCACAACTGAATTTAAGGCTCTATTATTACCTCAACAAACCACCCCAATATAAGTTTGAGATTACTACAATGAGCGAAGCACTTAAA < 1:973933/99‑1
TACCAGCTATTGCACAACTGAATTTAAGGCTCTATTATTACCTCAACAAACCACCCCAATATAAGTTTGAGATTACTACAATGAGCGAAGCACTTAAAA < 2:3255464/99‑1
CCAGCTATTGCACAACTGAATTTAAGGCTCTATTATTACCTCAACAAACCACCCCAATATAAGTTTGAGATTACTACAATGAGCGAAGCACTTAAAATT > 1:1977454/1‑99
CCAGCTATTGCACAACTGAATTTAAGGCTCTATTATTACCTCAACAAACCACCCCAATATAAGTTTGAGATTACTACAATGAGCGAAGCACTTAAAATT > 1:1988480/1‑99
CAGCTATTGCACAACTGAATTTAAGGCTCTATTATTACCTCAACAAACCACCCCAATATAAGTTTGAGATTACTACAATGAGCGAAGCACTTAAAATTC > 2:2936210/1‑99
AGCTATTGCACAACTGAATTTAAGGCTCTATTATTACCTCAACAAACCACCCCAATATAAGTTTGAGATTACTACAATGAGCGAAGCACTTAAAATTCT < 1:1411345/99‑1
GCTATTGCACAACTGAATTTAAGGCTCTATTATTACCTCAACAAACCACCCCAATATAAGTTTGAGATTACTACAATGAGCGAAGCACTTAAAATTCTG < 2:3050494/99‑1
GCTATTGCACAACTGAATTTAAGGCTCTATTATTACCTCAACAAACCACCCCAATATAAGTTTGAGATTACTACAATGAGCGAAGCACTTAAAATTCTG < 1:1766582/99‑1
GCTATTGCACAACTGAATTTAAGGCTCTATTATTACCTCAACAAACCACCCCAATATAAGTTTGAGATTACTACAATGAGCGAAGCACTTAAAATTCTG < 2:1684336/99‑1
GAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCAgc‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/19892‑19795
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GCTATTGCACAACTGAATTTAAGGCTCTATTATTACCTCAACAAACCACCCCAATATAAGTTTGAGATTACTACAATGAGCGAAGCACTTAAAATTCTG < NC_000913/1292997‑1292899
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
|---|
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |
GATK/CNVnator alignment
N/A
