Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A7 F422 I52 R1	239	220.4	11079197	93.2%	10325811	100.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	1,343,516	A→C	intergenic (‑188/+81)	osmB ← / ← yciT	osmotically and stress inducible lipoprotein/global regulator of transcription; DeoR family

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	1,343,516	0	A	C	99.5%	771.7 / NA	217	intergenic (‑188/+81)	osmB/yciT	osmotically and stress inducible lipoprotein/global regulator of transcription; DeoR family
Reads supporting (aligned to +/- strand): ref base A (0/0); major base C (98/118); minor base G (1/0); total (99/118)
Fisher's exact test for biased strand distribution p-value = 4.56e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 217 total aligned reads displayed.

CTGCTCGCGCGCAGGGTTATATCACGCAGGTGATAATGACTTCCTGTTATATCGCTGATAATAATTTTATATCTTGAGAGTGTTAATAACAGGTAAATAGTCTTAATTATCAACCAGGAATCATCTTAGAGCGGATGATTTGCCAAACTGCAAATCATCCGTAGAGAAGGGAAATGGTTAAATGTCAACGACG  >  NC_000913/1343420‑1343612

cTGCTCGCGCGCAGGGTTATATCACGCAGGTGATAATGACTTCCTGTTATATCGCTGATAATAATTTTATATCTTGAGAGTGTTAATAACAGGTAACTAg                                                                                               <  2:467038/100‑1 (MQ=255)

cTGCTCGCGCGCAGGGTTATATCACGCAGGTGATAATGACTTCCTGTTATATCGCTGATAATAATTTTATATCTTGAGAGTGTTAATAACAGGTAACTAg                                                                                               <  2:2831890/100‑1 (MQ=255)

   cTCGCGCGCAGGGTTATATCTCGCAGGTCGTAATGACTTCCTGTTAAATCGCTGATAATAAGTTTACGTCTTGAGAGTGTTAATAACAGGTAACTAGTCt                                                                                            <  2:3434386/100‑1 (MQ=255)

   cTCGCGCGCAGGGTTATATCACGCAGGTGATAATGACTTCCTGTTATATCGCTGATAATAATTTTATATCTTGAGAGTGTTAATAACAGGTAACTAGTCt                                                                                            >  1:4334148/1‑100 (MQ=255)

    tCGCGCGCAGGGTTATATCACGCAGGTGATAATGACTTCCTGTTATATCGCTGATAATAATTTTATATCTTGAGAGTGTTAATAACAGGTAACTAGTCtt                                                                                           >  2:2372631/1‑100 (MQ=255)

     cgcgcgCAGGGTTATATCACGCAGGTGATAATGACTTCCTGTTATATCGCTGATAATAATTTTATATCTTGAGAGTGTTAATAACAGGTAACTAGTCTTa                                                                                          >  2:190849/1‑100 (MQ=255)

       cgcgcAGGGTTATATCACGCAGGTGATAATGACTTCCTGTTATATCGCTGATAATAATTTTATATCTTGAGAGTGTTAATAACAGGTAACTAGTCTTAAt                                                                                        <  2:463321/100‑1 (MQ=255)

         cgcAGGGTTATATCACGCAGGTGATAATGACTTCCTGTTATATCGCTGATAATAATTTTATATCTTGAGAGTGTTAATAACAGGTAACTAGTCTTAATTa                                                                                      <  1:4968605/100‑1 (MQ=255)

          gcAGGGTTATATCACGCAGGTGATAATGACTTCCTGTTATATCGCTGATAATAATTTTATATCTTGAGAGTGTTAATAACAGGTAACTAGTCTTAATTAt                                                                                     <  2:4681327/100‑1 (MQ=255)

          gcAGGGTTATATCACGCAGGTGATAATGACTTCCTGTTATATCGCTGATAATAATTTTATATCTTGAGAGTGTTAATAACAGGTAACTAGTCTTAATTAt                                                                                     >  2:1827130/1‑100 (MQ=255)

           cAGGGTTATATCACGCAGGTGATAATGACTTCCTGTTATATCGCTGATAATAATTTTATATCTTGAGAGTGTTAATAACAGGTAACTAGTCTTAATTATc                                                                                    <  1:566148/100‑1 (MQ=255)

             gggTTATATCACGCAGGTGATAATGACTTCCTGTTATATCGCTGATAATAATTTTATATCTTGAGAGTGTTAATAACAGGTAACTAGTCTTAATTATCaa                                                                                  >  1:361535/1‑100 (MQ=255)

              ggTTATATCACGCAGGTGATAATGACTTCCTGTTATATCGCTGATAATAATTTTATATCTTGAGAGTGTTAATAACAGGTAACTAGTCTTAATTATCAAc                                                                                 <  1:706575/100‑1 (MQ=255)

               gTTATATCACGCAGGTGATAATGACTTCCTGTTATATCGCTGATAATAATTTTATATCTTGAGAGTGTTAATAACAGGTAACTAGTATTAATTATTaaac                                                                                >  2:915708/1‑98 (MQ=255)

                 tataTCACGCAGGTGATAATGACTTCCTGTTATATCGCTGATAATAATTTTATATCTTGAGAGTGTTAATAACAGGTAACTAGTCTTAATTATCAACCAg                                                                              >  1:1865482/1‑100 (MQ=255)

                 tataTCACGCAGGTGATAATGACTTCCTGTTATATCGCTGATAATAATTTTATATCTTGAGAGTGTTAATAACAGGTAACTAGTCTTAATTATCAACCAg                                                                              >  1:3508997/1‑100 (MQ=255)

                  atatCACGCAGGTGATAATGACTTCCTGTTATATCGCTGATAATAATTTTATATCTTGAGAGTGTTAATAACAGGTAACTAGTCTTAATTATCAACCAgg                                                                             <  2:1468027/100‑1 (MQ=255)

                   tatCACGCAGGTGATAATGACTTCCTGTTATATCGCTGATAATAATTTTATATCTTGAGAGTGTTAATAACAGGTAACTAGTCTTAATTATCAACCAGGa                                                                            >  1:1590579/1‑100 (MQ=255)

                   tatCACGCAGGTGATAATGACTTCCTGTTATATCGCTGATAATAATTTTATATCGTGAGAGTGTTAATAACAGGTAACTAGTCTTAATTATCAACCAGGa                                                                            >  2:5148345/1‑100 (MQ=255)

                   tatCACGCAGGTAATAATGACTTCCTGTTATATCGCTGATAATAATTTTATATCTTGAGAGGGTTAATAACAGGTAACTAGTCTTAATTATCAACCAGGa                                                                            >  2:5294154/1‑100 (MQ=255)

                    atCACGCAGGTGATAATGACTTCCTGTTATATCGCTGATAATAATTTTATATCTTGAGAGTGTTAATAACAGGTAACTAGTCTTAATTATCAACCAGGaa                                                                           >  1:1156169/1‑100 (MQ=255)

                     tCACGCAGGTGATAATGACTTCCTGTTATATCGCTGATAATAATTTTATATCTTGAGAGTGTTAATAACAGGTAACTAGTCTTAATTATCAACCAGGAat                                                                          >  1:3375952/1‑100 (MQ=255)

                          cAGGTGATAATGACTTCCTGTTATATCGCTGATAATAATTTTATATCTTGAGAGTGTTAATAACAGGTAACTAGTCTTAATTATCAACCAGGAATCATCt                                                                     <  2:1189534/100‑1 (MQ=255)

                          cAGGTGATAATGACTTCCTGTTATATCGCTGATAATAATTTTATATCTTGAGAGTGTTAATAACAGGTAACTAGTCTTAATTATCAACCAGGAATCATCt                                                                     <  1:2765237/100‑1 (MQ=255)

                            ggTGATAATGACTTCCTGTTATATCGCTGATAATAATTTTATATCTTGAGAGTGTTAATAACAGGTAACTAGTCTTAATTATCAACCAGGAATCATCTTa                                                                   >  2:2629546/1‑100 (MQ=255)

                             gTGATAATGACTTCCTGTTATATCGCTGATAATAATTTTATATCTTGAGAGTGTTAATAACAGGTAACTAGTCTTAATTATCAACCAGGAATCATCTTag                                                                  <  1:3885699/100‑1 (MQ=255)

                              tGATAATGACTTCCTGTTATATCGCTGATAATAATTTTATATCTTGAGAGTGTTAATAACAGGTAACTAGTCTTAATTATCAACCAGGAATCATCTTaga                                                                 >  2:4303825/1‑100 (MQ=255)

                              tGATAATGACTTCCTGTTATATCGCTGATAATAATTTTATATCATGATAGTGTTAATAACAGGTAACTAGTCTTAATTATCAACCAGGAATCATCTTaga                                                                 >  2:4242017/1‑100 (MQ=255)

                               gATAATGACTTCCTGTTATATCGCTGATAATAATTTTATATCTTGAGAGTGTTAATAACAGGTAACTAGTCTTAATTATCAACCAGGAATCATCTTagag                                                                <  2:3830580/100‑1 (MQ=255)

                                aTAATGACTTCCTGTTATATCGCTGATAATAATTTTATATCTTGAGAGTGTTAATAACAGGTAACTAGTCTTAATTATCAACCAGGAATCATCTTAGGGc                                                               <  1:2566673/100‑1 (MQ=255)

                                aTAATGACTTCCTGTTATATCGCTGATAATAATTTTATATCTTGAGAGTGTTAATAACAGGTAACTAGTCTTAATTATCAACCAGGAATCATCTTAGAGc                                                               >  1:2448373/1‑100 (MQ=255)

                                 tAATGACTTCCTGTTATATCGCTGATAATAATTTTATATCTTGAGAGTGTTAATAACAGGTAACTAGTCTTAATTATCAACCAGGAATCATCTTAGAGCg                                                              >  1:584647/1‑100 (MQ=255)

                                 tAATGACTTCCTGTTATATCGCTGATAATAATTTTATATCTTGAGAGTGTTAATAACAGGTAACTAGTCTTAATTATCAACCAGGAATCATCTTAGAGCg                                                              >  2:2191793/1‑100 (MQ=255)

                                 tAATGACTTCCTGTTATATCGCTGATAATAATTTTATATCTTGAGAGTGTTAATAACAGGTAACTAGTCTTAATTATCAACCAGGAATCATCTTAGAGCg                                                              >  2:876333/1‑100 (MQ=255)

                                      aCTTCCTGTTATATCGCTGATAATAATTTTATATCTTGAGAGTGTTAATAACAGGTAACTAGTCTTAATTATCAACCAGGAATCATCTTAGAGCGgatga                                                         <  2:414532/100‑1 (MQ=255)

                                      aCTTCCTGTTATATCGCTGATAATAATTTTATATCTTGAGAGTGTTAATAACAGGTAACTAGTCTTAATTATCAACCAGGAATCATCTTAGAGCGgatga                                                         >  2:4586606/1‑100 (MQ=255)

                                        ttCCTGTTATATCGCTGATAATAATTTTATATCTTGAGAGTGTTAATAACAGGTAACTAGTCTTAATTATCAACCAGGAATCATCTTAGAGCGGATGAtt                                                       <  2:2992806/100‑1 (MQ=255)

                                         tCCTGTTATATCGCTGATAATAATTTTATATCTTGAGAGTGTTAATAACAGGTAACTAGTCTTAATTATCAACCAGGAATCATCTTAGAGCGGATGAttt                                                      <  2:4872708/100‑1 (MQ=255)

                                          ccTGTTATATCGCTGATAATAATTTTATATCTTGAGAGTGTTAATAACAGGTAACTAGTCTTAATTATCAACCAGGAATCATCTTAGAGCGGATGATTTg                                                     <  1:2246123/100‑1 (MQ=255)

                                          ccTGTTATATCGCTGATAATAATTTTATATCTTGAGAGTGTTAATAACAGGTAACTAGTCTTAATTATCAACCAGGAATCATCTTAGAGCGGATGATTTg                                                     <  1:3254520/100‑1 (MQ=255)

                                           cTGTTATATCGCTGATAATAATTTTATATCTTGAGAGTGTTAATAACAGGTAACTAGTCTTAATTATCAACCAGGAATCATCTTAGAGCGGATGATTTGc                                                    <  1:3415555/100‑1 (MQ=255)

                                           cTGTTATATCGCTGATAATAATTTTATATCTTGAGAGTGTTAATAACAGGTAACTAGTCTTAATTATCAACCAGGAATCATCTTAGAGCGGATGATTTGc                                                    <  2:555194/100‑1 (MQ=255)

                                           cTGTTATATCGCTGATAATAATTTTATATCTTGAGAGTGTTAATAACAGGTAACTAGTCTTAATTATCAACCAGGAATCATCTTAGAGCGGATGATTTGc                                                    <  2:4745400/100‑1 (MQ=255)

                                           cTGTTATATCGCTGATAATAATTTTATATCTTGAGAGTGTTAATAACAGGTAACTAGTCTTAATTATCAACCAGGAATCATCTTAGAGCGGATGATTTGc                                                    <  1:322334/100‑1 (MQ=255)

                                           cTGTTATATCGCTGATAATAATTTTATATCTTGAGAGTGTTAATAACAGGTAACTAGTCTTAATTATCAACCAGGAATCATCTTAGAGCGGATGATTTGc                                                    >  2:3501577/1‑100 (MQ=255)

                                           cTGTTATATCGCTGATAATAATTTTATATCTTGAGAGTGTTAATAACAGGTAACTAGTCTTAATTATCAACCAGGAATCATCTTAGAGCGGATGATTTGc                                                    >  1:2097045/1‑100 (MQ=255)

                                             nttATATCGCTGATAATAATTTTATATCTTGAGAGTGTTAATAACAGGTAACTAGTCTTAATTATCAACCAGGAATCATCTTAGAGCGGATGATTTGCCa                                                  >  1:4446975/2‑100 (MQ=255)

                                                atatCGCTGATAATAATTTTATATCTTGAGAGTGTTAATAACAGGTAACTAGTCTTAATTATCAACCAGGAATCATCTTAGAGCGGATGATTTGCCAAAc                                               <  2:2724376/100‑1 (MQ=255)

                                                atatCGCTGATAATAATTTTATATCTTGAGAGTGTTAATAACAGGTAACTAGTCTTAATTATCAACCAGGAATCATCTTAGAGCGGATGATTTGCCAAAc                                               <  1:3089713/100‑1 (MQ=255)

                                                  atCGCTGATAATAATTTTATATCTTGAGAGTGTTAATAACAGGTAACTAGTCTTAATTATCAACCAGGAATCATCTTAGAGCGGATGATTTGCCAAACTg                                             <  1:5477082/100‑1 (MQ=255)

                                                  atCGCTGATAATAATTTTATATCTTGAGAGTGTTAATAACAGGTAACTAGTCTTAATTATCAACCAGGAATCATCTTAGAGCGGATGATTTGCCAAACTg                                             >  1:1200974/1‑100 (MQ=255)

                                                  atCGCTGATAATAATTTTATATCTTGAGAGTGTTAATAACAGGTAACTAGTCTTAATTATCAACCAGGAATCATCTTAGAGCGGATGATTTGCCAAACTg                                             >  1:1257085/1‑100 (MQ=255)

                                                  atCGCTGATAATAATTTTATATCTTGAGAGTGTTAATAACAGGTAACTAGTCTTAATTATCAACCAGGAATCATCTTAGAGCGGATGATTTGCCAAACTg                                             <  2:2067803/100‑1 (MQ=255)

                                                   tCGCTGATAATAATTTTATATCTTGAGAGTGTTAATAACAGGTAACTAGTCTTAATTATCAACCAGGAATCATCTTAGAGCGGATGATTTGCCAAACTGc                                            <  1:3752523/100‑1 (MQ=255)

                                                    cGCTGATAATAATTTTATATCTTGAGAGTGTTAATAACAGGTAACTAGTCTTAATTATCAACCAGGAATCATCTTAGAGCGGATGATTTGCCAAACTGCa                                           <  2:2188402/100‑1 (MQ=255)

                                                     gCTGATAATAATTTTATATCTTGAGAGTGTTAATAACAGGTAACTAGTCTTAATTATCAACCAGGAATCATCTTAGAGCGGATGATTTGCCAAACTGCaa                                          >  1:4084058/1‑100 (MQ=255)

                                                     gCTGATAATAATTTTATATCTTGAGAGTGTTAATAACAGGTAACTAGTCTTAATTATCAACCAGGAATCATCTTAGAGCGGATGATTTGCCAAACTGCaa                                          >  2:3815578/1‑100 (MQ=255)

                                                        gATAATAATTTTATATCTTGAGAGTGTTAATAACAGGTAACTAGTCTTAATTATCAACCAGGAATCATCTTAGAGCGGATGATTTGCCAAACTGCAAatc                                       >  1:2968372/1‑100 (MQ=255)

                                                        gATAATAATTTTATATCTTGAGAGTGTTAATAACAGGTAACTAGTCTTAATTATCAACCAGGAATCATCTTAGAGCGGATGATTTGCCAAACTGCAAatc                                       >  1:845409/1‑100 (MQ=255)

                                                          taataaTTTTATATCTTGAGAGTGTTAATAACAGGTAACTAGTCTTAATTATCAACCAGGAATCATCTTAGAGCGGATGATTTGCCAAACTGCAAatcct                                     >  2:1609103/1‑98 (MQ=255)

                                                           aataatTTTATATCTTGAGAGTGTTAATAACAGGTAACGAGTCTTAATTATCAACCATGAATCATCTTAGAGCGGATGATTGGCCAAACTGCAAatcatc                                    <  2:2522785/100‑1 (MQ=255)

                                                            ataatTTTATATCTTGAGAGTGTTAATAACAGGTAACTAGTCTTAATTATCAACCAGGAATCATCTTAGAGCGGATGATTTGCCAAACTGCAAATCATcc                                   >  2:3098969/1‑100 (MQ=255)

                                                            ataagTTTATATCTTGAGAGTGTTAATAACAGGTAACTAGTCTTAATTAGCAACCAGGAATCATCTTAGCACGGATGATTTGCCAAACTGAAAATCATcc                                   >  2:5181091/1‑100 (MQ=255)

                                                              aatTTTATATCTTGAGAGTGTTAATAACAGGTAACTAGTCTTAATTATCAACCAGGAATCATCTTAGAGCGGATGATTTGCCAAACTGCAAATCATCCGt                                 <  1:5283317/100‑1 (MQ=255)

                                                                 tttATATCTTGAGAGTGTTAATAACAGGTAACTAGTCTTAATTATCAACCAGGAATCATCTTAGAGCGGATGATTTGCCAAACTGCATATCATCCGTaga                              <  1:4799105/100‑1 (MQ=255)

                                                                 tttATATCTTGAGAGTGTTAATAACAGGTAACTAGTCTTAATTATCAACCAGGAATCATCTTAGAGCGGATGATTTGCCAAACTGCAAATCATCCGTaga                              <  2:2435304/100‑1 (MQ=255)

                                                                   tataTCTTGAGAGTGTTAATAACAGGTAACTAGTCTTAATTATCAACCAGGAATCATCTTAGAGCGGATGATTTGCCAAACTGCAAATCATCCGTAgaga                            <  2:1140788/100‑1 (MQ=255)

                                                                      atCTTGAGAGTGTTAATAACAGGTAACTAGTCTTAATTATCAACCAGGAATCATCTTAGAGCGGATGATTTGCCAAACTGCAAATCATCCGTAGAGAAgg                         >  2:1108840/1‑100 (MQ=255)

                                                                      atCTTGAGAGTGTTAATAACAGGTAACTAGTCTTAATTATCAACCAGGAATCATCTTAGAGCGGATGATTTGCCAAACTGCAAATCATCCGTAGAGAAgg                         >  2:3680572/1‑100 (MQ=255)

                                                                        cTTGAGAGTGTTAATAACAGGTAACTAGTCTTAATTATCAACCAGGAATCATCTTAGAGCGGATGATTTGCCAAACTGCAAATCATCCGTAGAGAAGGGa                       <  1:4533268/100‑1 (MQ=255)

                                                                        cTTGAGAGTGTTAATAACAGGTAACTAGTCTTAATTATCAACCAGGAATCATCTTAGAGCGGATGATTTGCCAAACTGCAAATCATCCGTAGAGAAGGGa                       >  1:869333/1‑100 (MQ=255)

                                                                        cTTGAGAGTGTTAATAACAGGTAACTAGTCTTAATTATCAACCAGGAATCATCTTAGAGCGGATGATTTGCCAAACTGCAAATCATCCGTAGAGAAGGGa                       >  2:4077393/1‑100 (MQ=255)

                                                                         ttGAGAGTGTTAATAACAGGTAACTAGTCTTAATTATCAACCAGGAATCATCTTAGAGCGGATGATTTGCCAAACTGCAAATCATCCGTAGAGAAGGGaa                      <  1:208240/100‑1 (MQ=255)

                                                                         ttGAGAGTGTTAATAACAGGTAACTAGTCTTAATTATCAACCAGGAATCATCTTAGAGCGGATGATTTGCCAAACTGCAAATCATCCGTAGAGAAGGGaa                      >  2:4537421/1‑100 (MQ=255)

                                                                          tGAGAGTGTTAATAACAGGTGACTAGTCTTAATTATCAACCAGGAATCATCTTAGAGCGGATGATTTGCCAAACTGCAAATCATCCGTAGAGAAGGGaaa                     <  1:5219711/100‑1 (MQ=255)

                                                                          tGAGAGTGTTAATAACAGGTAACTAGTCTTAATTATCAACCAGGAATCATCTTAGAGCGGATGATTTGCCAAACTGCAAATCATCCGTAGAGAAGGGaaa                     >  2:1502074/1‑100 (MQ=255)

                                                                          tGAGAGTGTTAATAACAGGTAACTAGTCTTAATTATCAACCAGGAATCATCTTAGAGCGGATGATTTGCCAAACTCCAAATCATCCGTAGAGAAGGGaaa                     <  2:1982839/100‑1 (MQ=255)

                                                                           gagaGTGTTAATAACAGGTAACTAGTCTTAATTATCAACCAGGAATCATCTTAGAGCGGATGATTTGCCAAACTGCAAATCATCCGTAGAGAAGGGAAAt                    <  2:4047636/100‑1 (MQ=255)

                                                                           gagaGTGTTAATAACAGGTAACTAGTCTTAATTATCAACCAGGAATCATCTTAGAGCGGATGATTTGCCAAACTGAAAATCATCCGTAGAGAAGGGAAAt                    >  2:803789/1‑100 (MQ=255)

                                                                            agagTGTTAATAACAGGTAACTAGTCTTAATTATCAACCAGGAATCATCTTAGAGCGGATGATTTGCCAAACTGCAAATCATCCGTAGAGAAGGGAAATg                   <  2:4986974/100‑1 (MQ=255)

                                                                            agagTGTTAATAACAGGTAACTAGTCTTAATTATCAACCAGGAATCATCTTAGAGCGGATGATTTGCCAAACTGCAAATCATCCGTAGAGAAGGGAAATg                   <  1:60579/100‑1 (MQ=255)

                                                                             gagTGTTAATAACAGGTAACTAGTCTTAATTATCAACCAGGAATCATCTTAGAGCGGATGATTTGCCAAACTGCAAATCATCCGTAGAGAAGGGAAATgg                  <  1:1911253/100‑1 (MQ=255)

                                                                             gagTGATAATAACAGGTAACTAGTCTTAATTATCAACCAGGAATCATCTTAGAGCGGCTGATTTGCCAAACTGCAAATCATCCGTAGAGAAGGGAAATgg                  >  2:4852050/1‑100 (MQ=255)

                                                                              agTGTTAATAACAGGTAACTAGTCTTAATTATCAACCAGGAATCATCTTAGAGCGGATGATTTGCCAAACTGCAAATCATCCGTAGAGAAGGGAAATGGt                 <  1:1607469/100‑1 (MQ=255)

                                                                              agTCTTAATAACAGGTAACTAGTCTTAATTATCAACCAGGAATCATCTTAGAGCGTATGATTTGCCAAACTGCAAATCATCCGTAGAGAAGGGAAATGGt                 <  1:4243410/100‑1 (MQ=255)

                                                                               gtgtTAATAACAGGTAACTAGTCTTAATTATCAACCAGGAATCATCTTAGAGCGGATGATTTGCCAAACTGCAAATCATCCGTAGAGAAGGGAAATGGtt                <  1:1342748/100‑1 (MQ=255)

                                                                                  ttAATAACAGGTAACTAGTCTTAATTATCAACCAGGAATCATCTTAGAGCGGATGATTTGCCAAACTGCAAATCATCCGTAGAGAAGGGAAATGGTTaaa             >  1:510663/1‑100 (MQ=255)

                                                                                   taataaCAGGTAACTAGTCTTAATTATCAACCAGGAATCATCTTAGAGCGGATGATTTGCCAAACTGCAAATCATCCGTAGAGAAGGGAAATGGTTAAAt            >  1:2593897/1‑100 (MQ=255)

                                                                                    aataaCAGGTAACTAGTCTTAATTATCAACCAGGAATCATCTTAGAGCGGATGATTTGCCAAACTGCAAATCATCCGTAGAGAAGGGAAATGGTTAAATg           <  2:3960972/100‑1 (MQ=255)

                                                                                    aataaCAGGTAACTAGTCTTAATTATCAACCAGGAATCATCTTAGAGCGGATGATTTGCCAAACTGCAAATCATCCGTAGAGAAGGGAAATGGTTAAATg           <  2:2424015/100‑1 (MQ=255)

                                                                                    aataaCAGGTAACTAGTCTTAATTATCAACCACGAATCATCTTAGAGCGTATGATTTGCCAAACTGCAAATCATCCGTAGAGAAGGGAAATGGTTAAATg           <  2:3732120/100‑1 (MQ=255)

                                                                                     ataaCAGGTAACTAGTCTTAATTATCAACCAGGAATCATCTTAGAGCGGATGATTTGCCAAACTGCAAATCATCCGTAGAGAAGGGAAATGGTTAAATGt          <  1:4114618/100‑1 (MQ=255)

                                                                                       aaCAGGTAACTAGTCTTAATTATCAACCAGGAATCATCTTAGAGCGGATGATTTGCCAAACTGCAAATCATCCGTAGAGAAGGGAAATGGTTAAATGTCa        >  1:2338694/1‑100 (MQ=255)

                                                                                       aaCAGGTAACTAGTCTTAATTATCAACCAGGAATCATCTTAGAGCGGATGATTTGCCAAACTGCAAATCATCCGTAGAGAAGGGAAATGGTTAAATGTCa        <  2:1571286/100‑1 (MQ=255)

                                                                                         cAGGTAACTAGTCTTAATTATCAACCAGGAATCATCTTAGAGCGGATGATTTGCCAAACTGCAAATCATCCGTAGAGAAGGGAAATGGTTAAATGTCAac      <  1:5139530/100‑1 (MQ=255)

                                                                                         cAGGTAACTAGTCTTAATTATCAACCAGGAATCATCTTAGAGCGGATGATTTGCCAAACTGCAAATCATCCGTAGAGAAGGGAAATGGTTAAATGTCAac      <  1:476095/100‑1 (MQ=255)

                                                                                         cAGGTAACTAGTCTTAATTATCAACCAGGAATCATCTTAGAGCGGATGATTTGCCAAACTGCAAATCATCCGTAGAGAAGGGAAATGGTTAAATGTCAac      >  2:1740381/1‑100 (MQ=255)

                                                                                          aGGTAACTAGTCTTAATTATCAACCAGGAATCATCTTAGAGCGGATGATTTGCCAAACTGCAAATCATCCGTAGAGAAGTGAAATGGTTAAATGTCAacg     <  1:4355673/100‑1 (MQ=255)

                                                                                          aGGTAACTAGTCTTAATTATCAACCAGGAATCATCTTAGAGCGGATGATTTGCCAAACTGCAAATCATCCGTAGAGAAGGGAAATGGTTAAATGTCAacg     <  1:2830298/100‑1 (MQ=255)

                                                                                            gTAACTAGTCTTAATTATCAACCAGGAATCATCTTAGAGCGGATGATTTGCCAAACTGCAAATCATCCGTAGAGAAGGGAAATGGTTAAATGTCAacgac   <  2:5443721/100‑1 (MQ=255)

CTGCTCGCGCGCAGGGTTATATCACGCAGGTGATAATGACTTCCTGTTATATCGCTGATAATAATTTTATATCTTGAGAGTGTTAATAACAGGTAAATAGTCTTAATTATCAACCAGGAATCATCTTAGAGCGGATGATTTGCCAAACTGCAAATCATCCGTAGAGAAGGGAAATGGTTAAATGTCAACGACG  >  NC_000913/1343420‑1343612

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A