Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A7 F422 I53 R1	229	158.0	8090706	91.1%	7370633	100.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	1,343,516	A→C	intergenic (‑188/+81)	osmB ← / ← yciT	osmotically and stress inducible lipoprotein/global regulator of transcription; DeoR family

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	1,343,516	0	A	C	96.8%	623.7 / 4.6	188	intergenic (‑188/+81)	osmB/yciT	osmotically and stress inducible lipoprotein/global regulator of transcription; DeoR family
Reads supporting (aligned to +/- strand): ref base A (3/3); new base C (82/100); total (85/103)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 188 total aligned reads displayed.

CTGCTCGCGCGCAGGGTTATATCACGCAGGTGATAATGACTTCCTGTTATATCGCTGATAATAATTTTATATCTTGAGAGTGTTAATAACAGGTAAATAGTCTTAATTATCAACCAGGAATCATCTTAGAGCGGATGATTTGCCAAACTGCAAATCATCCGTAGAGAAGGGAAATGGTTAAATGTCAACGACG  >  NC_000913/1343420‑1343612

cTGCTCGCGCGCAGGGTTATATCACGCAGGTGATAATGACTTCCTGTTATATCGCTGATAATAATTTTATATCTTGAGAGTGTTAATAACAGGTAACTAg                                                                                               >  1:2907205/1‑100 (MQ=255)

 tGCTCGCGCGCAGGGTTATATCACGCAGGTGATAATGACTTCCTGTTATATCGCTGATAATAATTTTATATCTTGAGAGTGTTAATAACAGGTAACTAGt                                                                                              >  2:3925716/1‑100 (MQ=255)

 tGCTCGCGCGCAGGGTTATATCACGCAGGTGATAATGACTTCCTGTTATATCGCTGATAATAATTTTATACCTTGAGAGTGTTAATAACAGGTAACTAGt                                                                                              >  1:1995052/1‑100 (MQ=255)

  gCTCGCGCGCAGGGTTATATCACGCAGGTGATAATGACTTCCTGTTATATCGCTGATAATAATTTTATATCTTGAGAGTGTTAATACACGGTAACTAggc                                                                                             >  2:3645201/1‑98 (MQ=255)

  gCTCGCGCGCAGGGTTATATCACGCAGGTGATAATGACTTCCTGTTATATCGCTGATAATAATTTTATATCTTGAGAGTGTTAATAACAGGTAACTAGTc                                                                                             >  2:879077/1‑100 (MQ=255)

  gCTCGCGCGCAGGGTTATATCACGCAGGGGATAATGACTTCCTGTTATATCGCTGATAATAATTTTATATCTTGAGAGTGTTAATAACAGGTAACTAGTc                                                                                             <  2:707246/100‑1 (MQ=255)

   cTCGCGCGCAGGGTTATATCACGCAGGTGATAATGACTTCCTGTTATATCGCTGATAATAATTTTATATCTTGAGAGTGTTAATAACAGGTAACTAGTCt                                                                                            <  2:1615849/100‑1 (MQ=255)

       cgcgcAGGGTTATATCACGCAGGTGATAATGACTTCCTGTTATATCGCTGATAATAATTTTATATCTTGAGAGTGTTAATAACAGGTAACTAGTCTTAAt                                                                                        <  1:2867134/100‑1 (MQ=255)

       cgagcAGGGTTATAGCACGAAGGTGATAATGAATTCCTGTTATATCGCTGATAATAATTTTATATCTTGAGAGTGTTAATAACAGGTAACTAGTCTTAAt                                                                                        <  2:356901/97‑1 (MQ=255)

         ctcAGGGTTATATCACGCAGGTGATAATGACTTCCTGTTATATCGCTGATAATAATTTTATATCTTGAGAGTGTTAATAACAGGTAACTAGTCTTAATTa                                                                                      <  2:283852/98‑1 (MQ=255)

         cgcAGGGTTATATCACGCAGGTGATAATGACTTCCTGTTATATCGCTGATAATAATTTTATATCTTGAGAGTGTTAATAACAGGTAACTAGTCTTAATTa                                                                                      >  2:3963036/1‑100 (MQ=255)

         cgcAGGGTTATATCACGCAGGTGATAATGACTTCCTGTTATATCGCTGATAATAATTTTATATCTTGAGAGTGTTAATAACAGGTAACTAGTCTTAATTa                                                                                      <  1:4040952/100‑1 (MQ=255)

         cgcAGGGTTATATCACGCAGGTGATAATGACTTCCTGTTATATCGCTGATAATAATTTTATATCTTGAGAGTGTTAATAACAGGTAACTAGTCTTAATTa                                                                                      <  1:535792/100‑1 (MQ=255)

           cAGGGTTATATCACGCAGGTGATAATGACTTCCTGTTATATCGCTGATAATAATTTTATATCTTGAGAGTGTTAATAACAGGTAACTAGTCTTAATTaag                                                                                    >  1:288575/1‑98 (MQ=255)

            aGGGTTATATCACGCAGGTGATAATGACTTCCTGTTATATCGCTGATAATAATTTTATATCTTGAGAGTGTTAATAACAGGTAACTAGTCTTAATTATCa                                                                                   <  2:2582781/100‑1 (MQ=255)

            aGGGTTATATCACGCAGGTGATAATGACTTCCTGTTATATCGCTGATAATAATTTTATATCTTGAGAGTGTTAATAACAGGTAACTAGTCTTAATTATCa                                                                                   <  1:584727/100‑1 (MQ=255)

             gggTTATATCACGCAGGTGATAATGACTTCCTGTTATATCGCTGATAATAATTTTATATCTTGAGAGTGTTAATAACAGGTAACTAGTCTTAATTATCaa                                                                                  <  2:1173958/100‑1 (MQ=255)

             gggTTATATCACGCAGGTGATAATGACTTCCTGTTATATCGCTGATAATAATTTTATATCTTGAGAGTGTTAATAACAGGTAACTAGTCTTAATTATCaa                                                                                  >  1:1603404/1‑100 (MQ=255)

              ggTTATATCACGAAGGTGATAATGACTTCCTGTTATATCGCTGATAATAATTTTATATCTTGAGAGTGTTAATAACAGGTAACTAGTCTTAATTATCAAc                                                                                 <  2:533557/100‑1 (MQ=255)

                   tatCACGCAGGTGATAATGACTTCCTGTTATATCGCTGATAATAATTTTATATCTTGAGAGTGTTAATAACAGGTAACTAGTCTTAATTATCAACCAGGa                                                                            >  2:3421658/1‑100 (MQ=255)

                   tatCACGCAGGTGATAATGACTTCCTGTTATATCGCTGATAATAATTTTATATCTTGAGAGTGTTAATAACAGGTAACTAGTCTTAATTATCAACCAGGa                                                                            >  1:2269275/1‑100 (MQ=255)

                     tCACGCAGGTGATAATGACTTCCTGTTATATCGCTGATAATAATTTTATATCTTGAGAGTGTTAATAACAGGTAACTAGTCTTAATTATCAACCAGGAat                                                                          >  1:2710593/1‑100 (MQ=255)

                     tCACGCAGGTGATAATGACTTCCTGTTATATCGCTGATAATAATTTTATATCTTGAGAGTGTTAATAACAGGTAACTAGTCTTAATTATCAACCAGGAat                                                                          <  1:2573443/100‑1 (MQ=255)

                     tCACGCAGGTGATAATGACTTCCTGTTATATCGCTGATAATAATTTTATATCTTGAGAGTGTTAATAACAGGTAACTAGTCTTAATTATCAACCAGGAat                                                                          >  2:3720721/1‑100 (MQ=255)

                       aCGCAGGTGATAATGACTTCCTGTTATATCGCTGATAATAATTTTATATCTTGAGAGTGTTAATAACAGGTAACTAGTCTTAATTATCAACCAGGAatca                                                                        >  2:1039931/1‑100 (MQ=255)

                       aCGCAGGTGATAATGACTTCCTGTTATATCGCTGATAATAATTTTATATCTTGAGAGTGTTAATAACAGGTAACTAGTCTTAATTATCAACCAGGAatca                                                                        <  2:2060170/100‑1 (MQ=255)

                        cGCAGGTGATAATGACTTCCTGTTATATCGCTGATAATAATTTTATATCTTGAGAGTGTTAATAACAGGTAACTAGTCTTAATTATCAACCAGGAatcat                                                                       >  1:1686852/1‑100 (MQ=255)

                         gCAGGTGATAATGACTTCCTGTTATATCGCTGATAATAATTTTATATCTTGAGAGTGTTAATAACAGGTAACTAGTCTTAATTATCAACCAGGAatcatc                                                                      <  2:809962/100‑1 (MQ=255)

                          cAGGTGATAATGACTTCCTGTTATATCGCTGATAATAATTTTATATCTTGAGAGTGTTAATAACAGGTAACTAGTCTTAATTATCAACCAGGAATCATCt                                                                     >  1:2126480/1‑100 (MQ=255)

                            ggTGATAATGACTTCCTGTTATATCGCTTATAATAATTTTATATCTTGAGAATGTTAATACCAAGTAACTAGTCTTAATTATCAACCAGGAATCATCTTa                                                                   <  2:3033261/100‑1 (MQ=255)

                            ggTGATAATGACTTCCTGTTATATCGCTGATAATAATTTTATATCTTGAGAGTGTTAATAACAGGTAACTAGTCTTAATTATCAGCCAGGAATCATCTTa                                                                   >  2:2232275/1‑100 (MQ=255)

                            ggTGATAATGACTTCCTGTTATATCACTGATAATAATTTTATATCTTGAGAGTGTTAATAACAGGTAACTAGTCTTAATTATCAACCAAGAATCATCTTa                                                                   >  2:3193165/1‑100 (MQ=255)

                             gTGATAATGACTTCCTGTTATATCGCTGATAATAATTTTATATCTTGAGAGTGTTAATAACAGGTAACTAGTCTTAATTATCAACCAGGAATCATCTTag                                                                  >  1:1043341/1‑100 (MQ=255)

                             gTGATAATGACTTCCTGTTATATCGCTGATAATAATTTTATATCTTGAGAGTGTTAATAACAGGTAACTAGTCTTAATTATCAACCAGGAATCATCTTag                                                                  <  1:482665/100‑1 (MQ=255)

                              tGATAATGACTTCCTGTTATATCGCTGATAATAATTTTATATCTTGAGAGTGTTAATAACAGGTAACTAGTCTTAATTATCAACCAGGAATCATCTTaga                                                                 >  2:1302394/1‑100 (MQ=255)

                               gATAATGACTTCCTGTTATATCGCTGATAATAATTTTATATCTTGAGAGTGTTAATAACAGGTAACTAGTCTTAATTATCAACCAGGAATCATCTTagag                                                                >  2:399866/1‑100 (MQ=255)

                               gATAATGACTTCCTGTTATATCGCTGATAATAATTTTATATCTTGAGAGTGTTAATAACAGGTAACTAGTCTTAATTATCAACCAGGAATCATCTTagag                                                                >  1:3605209/1‑100 (MQ=255)

                                aTAATGACTTCCTGTTATATCGCTGATAATAATTTTATATCTTGAGAGTGTTAATAACAGGTAACTAGTCTTAATTATCAACCAGGAATCATCTTAGAGc                                                               <  1:402746/100‑1 (MQ=255)

                                 tAATGACTTCCTGTTATATCGCTGATGATAATTTTATATCTTGAGAGTGTTAATAACAGGTAACTAGTCTTAATTATCAACCAGGAATCATCTTAGAGCg                                                              <  2:1715043/100‑1 (MQ=255)

                                 tAATGACTTCCTGTTATATCGCTGATAATAATTTTATATCTTGAGAGTGTTAATAACAGGTAAATAGTCTTAATTATCAACCAGGAATCATCTTAGAGCg                                                              <  2:1640649/100‑1 (MQ=255)

                                    tGACTTCCTGTTATATCGCTGATAATAATTTTATATCTTGAGAGTGTTAATAACAGGTAACTAGTCTTAATTATCAACCAGGAATCATCTTAGAGCGgat                                                           >  1:570028/1‑100 (MQ=255)

                                     gACTTCCTGTTATATCGCTGATAATAATTTTATATCTTGAGAGTGTTAATAACAGGTAACTAGTCTTAATTATCAACCAGGAATCATCTTAGAGCGgatg                                                          <  1:660499/100‑1 (MQ=255)

                                     gACTTCCTGTTATATCGCTGATAATAATTTTATATCTTGAGAGTGTTAATAACAGGTAACTAGTCTTAATTATCAACCAGGAATCATCTTAGAGCGgatg                                                          <  1:2513551/100‑1 (MQ=255)

                                      aCTTCCTGTTATATCGCTGATAATAATTTTATATCTTGAGAGTGTTAATAACAGGTAACTAGTCTTAATTATCAACCAGGAATCATCTTAGAGCGgatga                                                         <  2:409226/100‑1 (MQ=255)

                                      aCTTCCTGTTATATCGCTGATAATAATTTTATATCTTGAGAGTGTTAATAACAGGTAACTAGTCTTAATTATCAACCAGGAATCATCTTAGAGCGgatga                                                         >  1:989247/1‑100 (MQ=255)

                                       attCCTGGTATATGGCTGCTAATAATTTTGTATCTTAAGAGTGTTAATAACAGGTATATAGTCTTAATTATCAACCAGGAATGATGTTACAGCGcatgat                                                        >  2:3295615/2‑100 (MQ=255)

                                          ccTGTTATATCGCTGATAATAATTTTATATCTTGAGAGTGTTAATAACAGGTAACTAGTCTTAATTATCAACCAGGAATCATCTTAGAGCGGATGATTTg                                                     >  2:1156914/1‑100 (MQ=255)

                                           cTGTTATATCGCTGATAATAATTTTATATCTTGAGAGTGTTAATAACAGGTAACTAGTCTTAATTATCAACCAGGAATCATCTTAGAGCGGATGATTTGc                                                    >  2:2513929/1‑100 (MQ=255)

                                            tGTTATATCGCTGATAATAATTTTATATCTTGAGAGTGTTAATAACAGGTAACTAGTCTTAATTATCAACCAGGAATCATCTTAGAGCGGATGATTTGcc                                                   >  1:1049565/1‑100 (MQ=255)

                                             gTTATATCGCTGATAATAATTTTATATCTTGAGAGTGTTAATAACAGGTAACTAGTCTTAATTATCAACCAGGAATCATCTTAGAGCGGATGATTTGCCa                                                  >  1:1463496/1‑100 (MQ=255)

                                               tataTCGCTGATAATAATTTTATATCTTGAGAGTGTTAATAACAGGTAAATAGTCTTAATTATCAACCAGGAATCATCTTAGAGCGGATGATTTGCCaaa                                                >  2:2138611/1‑100 (MQ=255)

                                                atatCGCTGATAATAATTTTATATCTTGAGAGTGTTAATAACAGGTAACTAGTCTTAATTATCAACCAGGAATCATCTTAGAGCGGATGATTTGCCAAAc                                               >  2:3347591/1‑100 (MQ=255)

                                                atatCGCTGATAATAATTTTATATCTTGAGAGGGTTAATAACAGGTAACTAGTCATAATTATCAACGACGAATAACCTGAGAGCGGATGATTTGCGAAAc                                               >  2:350799/1‑100 (MQ=255)

                                                   tCGCTGATAATAATTTTATATCTTGAGAGTGTTAATAACAGGTAACTAGTCTTGATTATCAACCAGGAATCATCTTAGAGCGGATGATTTGCCAAACTGc                                            >  2:3696425/1‑100 (MQ=255)

                                                   tCGCTGATAATAATTTTATATCTTGAGAGTGTTAATAACAGGTAACTAGTCTTAATTATCAACCAGGAATCATCTTAGAGCGGATGATTTGCCAAACTGc                                            >  2:3444470/1‑100 (MQ=255)

                                                   tCGCTGATAATAATTTTATATCTTGAGAGTGTTAATAACAGGTAACTAGTCTTAATTATCAACCAGGAATCATCTTAGAGCGGATGATTTGCCAAACTGc                                            <  1:1407847/100‑1 (MQ=255)

                                                    cGCTGATAATAATTTTATATCTTGAGAGTGTTAATAACAGGTAACTAGTCTTAATTATCAACCAGGAATCATCTTAGAGCGGATGATTTGCCAAACTGCa                                           >  1:1179739/1‑100 (MQ=255)

                                                    cGCTGATAATAATTTTATATCTTGAGAGTGTTAATAACAGGTAACTAGTCTTAATTATCAACCAGGAATCATCTTAGAGCGGATGATTTGCCAAACTGCa                                           <  1:3647996/100‑1 (MQ=255)

                                                     gCTGATAATAATTTTATATCTTGAGAGTGTTAATAACAGGTAACTAGTCTTAATTATCACCCAGGAATCATCTTAGAGCGGATGATTTGCCAAACTGCaa                                          <  2:3676362/100‑1 (MQ=255)

                                                       tGATAATAATTTTATATCTTGAGAGTGTTAATAACAGGTAACTAGTCTTAATTATCAACCAGGAATCATCTTAGAGCGGATGATTTGCCAAACTGCAAat                                        <  1:1284994/100‑1 (MQ=255)

                                                         ataataATTTTATATCTTGAGAGTGTTAATAACAGGTAACTAGTCTTAATTATCAACCAGGAATCATCTTAGAGCGGATGATTTGCCAAACTGCAAatca                                      >  1:750272/1‑100 (MQ=255)

                                                          taataaTTTTATATCTTGAGAGTGTTAATAACAGGTAACTAGTCTTAATTATCAACCAGGAATCATCTTAGAGCGGATGATTTGCCAAACTGCAAatcat                                     <  1:1738730/100‑1 (MQ=255)

                                                          taataaTTTTATATCTTGAGAGTGTTAATAACAGGTAACTAGTCTTAATTATCAACCAGGAATCATCTTAGAGCGGATGATTTGCCAAACTGCAAatcat                                     >  2:2765729/1‑100 (MQ=255)

                                                           aataatTTTATATCTTGAGAGTGTTAATAACAGGTAACTAGTCTTAATTATCAACCAGGAATCATCTTAGAGCGGATGATTTGCCAAACTGCAAatcatc                                    >  1:455131/1‑100 (MQ=255)

                                                           aataatTTTATATCTTGAGAGTGTTAATAACAGGTAACTAGTCTTAATTATCAACCAGGAATCATCTTAGAGCGGATGATTTGCCAAACTGCAAatcatc                                    >  1:2525775/1‑100 (MQ=255)

                                                             taatTTTATATCTTGAGAGTGTTAATAACAGGTAACTAGTCTTAATTATCAACCAGGAATCATCTTAGAGCGGATGATTTGCCAAACTGCAAATCATCCg                                  <  1:1357849/100‑1 (MQ=255)

                                                             taatTTTATATCTTGAGAGTGTTAATAACAGGTAACTAGTCTTAATTATCAACCAGGAATCATCTTAGAGCGGATGATTTGCCAAACTGCAAATCATCCg                                  <  2:1060327/100‑1 (MQ=255)

                                                              aatTTTATATCTTGAGAGTGTTAATAACAGGTAACTAGTCTTAATTATCAACCAGGAATCATCTTAGAGCGGATGATTTGCCAAACTGCAAATCATCCGt                                 >  1:2267001/1‑100 (MQ=255)

                                                                ttttATATCTTGAGAGTGTTAATAACAGGTAACTAGTCTTAATTATCAACCAGGAATCATCTTAGAGCGGATGATTTGCCAAACTGCAAATCATCCGTag                               >  2:2460221/1‑100 (MQ=255)

                                                                     tatCTTGAGAGTGTTAATAACAGGTAACTAGTCTTAATTATCAACCAGGAATCATCTTAGAGCGGATGATTTGCCAAACTGCAAATCATCCGTAGAGAAg                          >  1:3022097/1‑100 (MQ=255)

                                                                     tatCTTGAGAGTGTTAATAACAGGTAACTAGTCTTAATTATCAACCAGGAATCATCTTAGAGCGGATGATTTGCCAAACTGCAAATCATCAGTAGAGAAg                          >  2:2113146/1‑100 (MQ=255)

                                                                      atCTTGAGAGTGTTAATAACAGGTAACTAGTCTTAATTATCAACCAGGAATCATCTTAGAGCGGATGATTTGCCAAACTGCAAATCATCCGTAGAGAAgg                         <  1:1796313/100‑1 (MQ=255)

                                                                       tCTTGAGAGTGTTAATAACAGGTAACTAGTCTTAATTATCAACCAGGAATCATCTTAGAGCGGATGATTTGCCAAACTGCAAATCATCCGTAGAGAAggn                        <  2:439568/100‑2 (MQ=255)

                                                                       tCTTGAGAGTGTTAATAACAGGTAACTAGTCTTAATTATCAACCAGGAATCATCTTAGAGCGGATGATTTGCCAAACTGCAAATCATCCGTAGAGAAggg                        <  2:1576405/100‑1 (MQ=255)

                                                                       tCTTGAGAGTGTTAATAACAGGTAACTAGTCTTAATTATCAACCAGGAATCATCTTAGAGCGGATGATTTGCCAAACTGCAAATCATCCGTAGAGAAggg                        >  1:3165800/1‑100 (MQ=255)

                                                                       tCTGGAGAGTGTGAATAACAGGAAACTAGTCTTAATGCTGAACCAGGAATCATCTTAGAGCTGATTATTTGCCATACTTCAAATCATCCGTCGAGAAggg                        >  2:227857/1‑100 (MQ=255)

                                                                        cTTGAGAGCGTTAATAACAGGTAACTAGTCTTAATTATCAACCAGGAATCATCTTAGAGCGGATGATTTGCCAAACTGCAAATCCTCCGTAGAGAAGGGa                       >  2:3830512/1‑100 (MQ=255)

                                                                            agggtgtTAATAAGAGGTAACTAGTCTTAATTATCAACCAGGAATCATCTTAGAGCGGATGATTTGCCAAACTGCAAATCATCCGTAGAGAAGGGAAATg                   <  2:245702/97‑1 (MQ=255)

                                                                            agagTGTTAATAACAGGTAACTAGTCTTAATTATCAACCAGGAATCATCTTAGAGCGGATGATTTGCCAAACTGCAAATCATCCGTAGAGAAGGGAAATg                   <  2:1973187/100‑1 (MQ=255)

                                                                            agagTGTTAATAACAGGTAACTAGTCTTAATTATCAACCAGAAATCATCTTAGAGCGGATGATATGCCAACATGCACATAATCCGTAGAGAGGGGAAATg                   >  1:2032488/1‑100 (MQ=255)

                                                                             gagTGTTAATAACAGGTAACTAGTCTTAATTATCAACCAGGAATCATCTTAGAGCGGATGATTTGCCAAACTGCAAATCATCCGTAGAGAAGGGAAATgg                  >  2:2537387/1‑100 (MQ=255)

                                                                             gagTGTTAATAACAGGTAACTAGTCTTAATTATCAACCAGGAATCATCTTAGAGCGGATGATTTGCCAAACTGCAAATCATCCGTAGAGAAGGGAAATgg                  >  2:1211631/1‑100 (MQ=255)

                                                                             gagTGTTAATAACAGGTAACTAGTCTTAATTATCAACCAGGAATCATCTTAGAGCGGATGATTTGCCAAACTGCAAATCATCCGTAGAGAAGGGAAATgg                  <  2:3590170/100‑1 (MQ=255)

                                                                             gagTGTTAATAACAGGTAACTAGTCTTAATTATCAACCAGGAATCATCTTAGAGCGGATGATTTGCCAAACTGCAAATCATCCGTAGAGAAGGGAAATgg                  <  1:3207507/100‑1 (MQ=255)

                                                                                tgtTAATAACAGGTAACTAGTCTTAATTATCAACCAGGAATCATCTTAGAGCGGATGATTTGCCAAACTGCAAATCATCCGTAGAGAAGGGAAATGGTTa               <  1:2149388/100‑1 (MQ=255)

                                                                                tgtTAATAACAGGTAACTAGTCTTAATTATCAACCAGGAATCATCTTAGAGCGGATGATTTGCCAAACTGCAAATCATCCGTAGAGAAGGGAAATGGTTa               <  2:1840495/100‑1 (MQ=255)

                                                                                 gtTAATAACAGGTAACTAGTCTTAATTATCAACCAGGAATCATCTTAGAGCGGATGATTTGCCAAACTGCAAATCATCCGTAGAGAAGGGAAATGGTTaa              >  1:2090118/1‑100 (MQ=255)

                                                                                 gtTAATAACAGGTAACTAGTCTTAATTATCAACCAGGAATCATCTTAGAGCGGATGATTTGCCAAACTGCAAATCATCCGTAGAGAAGGGAAATGGTTaa              <  2:3267666/100‑1 (MQ=255)

                                                                                   taataaCAGGTAACTAGTCTTAATTATCAACCAGGAATCATCTTAGAGCGGATGATTTGCCAAACTGCAAATCATCCGTAGAGAAGGGAAATGGTTAAAt            >  2:1923238/1‑100 (MQ=255)

                                                                                   taataaCAGGTAACTAGTCTTAATTATCAACCAGGAATCATCTTAGAGCGGATGATTTGCCAAACTGCAAATCATCCGTAGAGAAGGGAAATGGTTAAAt            >  2:1253362/1‑100 (MQ=255)

                                                                                    aataaCAGGTAACTAGTCTTAATTATCAACCAGGAATCATCTTAGAGCGGATGATTTGCCAAACTGCAAATCATCCGTAGAGAAGGGAGATGGTTAAATg           >  2:3198511/1‑100 (MQ=255)

                                                                                    aataaCAGGTAACTAGTCTTAATTATCAACCAGGAATCATCTTAGAGCGGATGATTTGCCAAACTGCAAATCATCCGTAGAGAAGGGAAATGGTTAAATg           <  2:1005472/100‑1 (MQ=255)

                                                                                     ataaCAGGTAACTAGTTTTAATTATCAACCAGGAATCATCTTAGAGCGGATGATTTGCCAAACTGCAAATCATTCGTAGAGAAGGCAAATGGTTAAATGt          >  2:572634/1‑100 (MQ=255)

                                                                                     ataaCAGGTAACTAGTCTTAATTATCAACCAGGAATCATCTTAGAGCGGATGATTTGCCAAACTGCAAATCATCCGTAGAGAAGGGAAATGGTTAAATGt          >  2:2424195/1‑100 (MQ=255)

                                                                                      taaCAGGTAACTAGTCTTAATTATCAACCAGGAATCATCTTAGAGCGGATGATTTGCCAAACTGCAAATCATCCGTAGAGAAGGGAAATGGTTAAATGTc         >  1:2386510/1‑100 (MQ=255)

                                                                                      taaCAGGTAACTAGTCTTAATTATCAACCAGGAATCATCTTAGAGCGGATGATTTGCCAAACTGCAAATCATCCGTAGAGAAGGGAAATGGTTAAATGTc         <  1:716118/100‑1 (MQ=255)

                                                                                      taaCAGGTAACTAGTCTTAATTATCAACCAGGAATCATCTTAGAGCGGATGATTTGCCAAACTGCAAATCATCCGTAGAGAAGGGAAATGGTTAAATGTc         >  2:1378670/1‑100 (MQ=255)

                                                                                        aCAGGTAACTAGTCTTAATTATCAACCAGGAATCATCTTAGAGCGGATGATTTGCCAAACTGCAAATCATCCGTAGAGAAGGGAAATGGTTAAATGTCaa       >  1:3570160/1‑100 (MQ=255)

                                                                                          aGGTAACTAGTCTTAATTATCAACCAGGAATCATCTTAGAGCGGATGATTTGCCAAACTGCAAATCATCCGTAGAGAAGGGAAATGGTTAAATGTCAacg     <  1:2801648/100‑1 (MQ=255)

                                                                                           ggTAACTAGTCTTAATTATCAACCAGGAATCATCTTAGAGCGGATGATTTGCCAAACTGCAAATCATCCGTAGAGAAGGGAAATGGTTAAATGTCAacga    >  2:2794157/1‑100 (MQ=255)

CTGCTCGCGCGCAGGGTTATATCACGCAGGTGATAATGACTTCCTGTTATATCGCTGATAATAATTTTATATCTTGAGAGTGTTAATAACAGGTAAATAGTCTTAATTATCAACCAGGAATCATCTTAGAGCGGATGATTTGCCAAACTGCAAATCATCCGTAGAGAAGGGAAATGGTTAAATGTCAACGACG  >  NC_000913/1343420‑1343612

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A