Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A7 F422 I52 R1
|
239 |
220.4 |
11079197 |
93.2% |
10325811 |
100.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
1,571,816 |
T→G |
D77A (GAT→GCT) |
gadB ← |
glutamate decarboxylase B, PLP‑dependent |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 1,571,816 | 0 | T | G | 98.2%
| 769.4
/ 2.2
| 221 | D77A (GAT→GCT) | gadB | glutamate decarboxylase B, PLP‑dependent |
| Reads supporting (aligned to +/- strand): ref base T (1/3); new base G (118/98); total (119/102) |
| Fisher's exact test for biased strand distribution p-value = 3.35e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.43e-01 |
Only 100 of 221 total aligned reads displayed.
ATGCCACAGATCGGCAACCATATTTACGCAACGCAGGTCGATGGCTGCGGATTGCGGATATTCTTCTTTGTCGATCCAGTTTTTGTTAATGGATAAATCCATCAATTTGTGGACATTTTCGTCGTCCCAGGTCTGGCAGAAAGTGGCCAGGTTCTGACGAGCGTTGCCATCAAGATATAATTCGTCATTGATA > NC_000913/1571719‑1571911
|
gCCACAGATAGGCAAACATATTTACGCAACGCAGGTCGATGGCTGCGGATTGCGGCTATTCTTCTTTGTAGATCCAGTTTTTGTTAATGGATAAAGccct > 2:528922/1‑98 (MQ=14)
ccACAGATCGGCAACCATATTTACGCAACGCAGGTCGATGGCTGCGGATTGCGGATATTCTTCTTTGTCGATCCAGTTTTTGTTAATGGATAAAGCCATc < 1:5049241/100‑1 (MQ=255)
ccACAGATCGGCAACCATATTTACGCAACGCAGGTCGATGGCTGCGGATTGCGGATATTCTTCTTTGTCGATCCAGTTTTTGTTAATGGATAAAGCCATc < 1:1684904/100‑1 (MQ=255)
ccACAGATCGGCAACCATATTTACGCAACGCAGGTCGATGGCTGCGGATTGCGGATATTCTTCTTTGTCGATCCAGTTTTTGTTAATGGATAAACCCATc < 2:4843564/100‑1 (MQ=255)
nacaGATCGGCAACCATATTTACGCAACGCAGGTCGATGGCTGCGGATTGCGGATATTCTTCTTTGTCGATCCAGTTTTTGTTAATGGATAAAGCCATCa > 1:1547880/2‑100 (MQ=255)
cacaGATCGGCAACCATATTTACGCAACGCAGGTCGATGGCTGCGGATTGCGGATATTCTTCTTTGTCGATCCAGTTTTTGTTAATGGATAAAGCCATCa > 1:2395721/1‑100 (MQ=255)
cacaGATCGGCAACCATATTTACGCAACGCAGGTCGATGGCTGCGGATTGCGGATATTCTTCTTTGTCGATCCAGTTTTTGTTAATGGATAAAGCCATCa > 2:264291/1‑100 (MQ=255)
cacaGATCGGCAACCATATTTACGCAACGCAGGTCGATGGCTGCGGATTGCGGATATTCTTCTTTGTCGATCCAGTTTTTGTTAATGGATAAAGCCATCa > 1:2811778/1‑100 (MQ=255)
gATCGGCAACCATATTTACGCAACGCAGGTCGATGGCTGCGGATTGCGGATATTCTTCTTTGTCGATCCAGTTTTTGTTAATGGATAAAGCCATCAAttt > 1:3155911/1‑100 (MQ=255)
gATCGGCAACCATATTTACGCAACGCAGGTCGATGGCTGCGGATTGCGGATATTCTTCTTTGTCGATCCAGTTTTTGTTAATGGATAAAGCCATCAAttt > 1:4117252/1‑100 (MQ=255)
tCGGCAACCATATTTACGCAACGCAGGTCGATGGCTGCGGATTGCGGATATTCTTCTTTGTCGATCCAGTTTTTGTTAATGGATAAAGCCATCAATTtgt < 1:290955/100‑1 (MQ=255)
cGGCAACCATATTTAGGCAACGCAGGTCGACGGCTGCGGCTTGCGCATATTCTTCTTGGTCGATCCAGTTTTTGTTGATGGATAAAGCCAGCAATTtgtg > 1:4848318/1‑100 (MQ=14)
cGGCAACCATATTTACGCAACGCAGGTCGATGGCTGCGGATTGCGGATATTCTTCTTTGTCGATCCAGTTTTTGTTAATGGATAAAGCCATCAATTtgtg < 1:182837/100‑1 (MQ=255)
cGGCAACCATATTTACGCAACGCAGGTCGATGGCTGCGGATTGCGGATATTCTTCTTTGTCGATCCAGTTTTTGTTAATGGATAAAGCCATCAATTtgtg < 1:1425971/100‑1 (MQ=255)
ggCAACCATATTTACGCAACGCAGGTCGATGGCTGCGGATTGCGGATATTCTTCTTTGTCGATCCAGTTTTTGTTAATGTATAAAGCCATCAATTTGTgg < 1:3484761/100‑1 (MQ=255)
gCAACCATATTTACGCAACGCAGGTCGATGGCTGCGGATTGCGGATATTCTTCTTTGTCGATCCAGTTTTTGTTAATGGATAAAGCCATCAATTTGTGGa < 1:4562288/100‑1 (MQ=255)
cAACCATATTTACGCAACGCAGGTCGATGGCTGCGGATTGCGGATATTCTTCTTTGTCGATCCAGTTTTTGTTAATGGATAAAGCCATCAATTTGTGGAc > 2:2955822/1‑100 (MQ=255)
cAACCATATTTACGCAACGCAGGTCGATGGCTGCGGATTGCGGATATTCTTCTTTGTCGATCCAGTTTTTGTTAATGGATAAAGCCATCAATTTGTGGAc > 1:3566579/1‑100 (MQ=255)
aaCCATATTTACGCAACGCAGGTCGATGGCTGCGGCTTGCGGATATTCTTCTTTGTCGATCCAGTTTTTGTTAATGGATAAAGCCATCAATTTGTGGACa < 2:4637469/100‑1 (MQ=255)
atatTTACGCAACGCAGGTCGATGGCTGCGGATTGCGGATATTCTTCTTTGTCGATCCAGTTTTTGTTAATGGATAAAGCCATCAATTTGTGGACAtttt < 2:5187373/100‑1 (MQ=255)
atTTACGCAACGCAGGTCGATGGCTGCGGATTGCGGATATTCTTCTTTGTCGATCCAGTTTTTGTTAATGGATAAAGCCATCAATTTGTGGACATTTtcg > 1:202028/1‑100 (MQ=255)
tttACGCAACGCAGGTCGATGGCTGCGGATTGCGGATATTCTTCTTTGTCGATCCAGTTTTTGTTAATGGATAAAGCCATCAATTTGTGGACATTTtcgt < 2:5410653/100‑1 (MQ=255)
tttACGCAACGCAGGTCGATGGCTGCGGATTGCGGATATTCTTCTTTGTCGATCCAGTTTTTGTTAATGGATAAAGCCATCAATTTGTGGACATTTtcgt < 2:344876/100‑1 (MQ=255)
acgcaacgcaGGTCGATGGCTGCGGATTGCGGATATTCTTCTTTGTCGATCCAGTTTTTGTTAATGGATAAAGCCATCAATTTGTGGACATTTTcgtcgt > 1:4363391/1‑100 (MQ=255)
cgcaacgcaGGTCGATGGCTGCGGATTGCGGATATTCTTCTTTGTCGATCCAGTTTTTGTTAATGGATAAATCCATCAATTTGTGGACATTTTCgtcgtc < 2:4522736/100‑1 (MQ=255)
cgcaacgcaGGTCGATGGCTGCGGATTGCGGATATTCTTCTTTGTCGATCCAGTTTTTGTTAATGGATAAAGCCATCAATTTGTGGACATTTTCgtcgtc < 1:3713059/100‑1 (MQ=255)
cgcaacgcaGGTCGATGACTGCGGATTGCGGATATTCTTCTTTGTCGATCCAGTTTTTGTTAATGGATAAAGCCATCAATTTGTGGACATTTTCgtcgtc > 1:1883055/1‑100 (MQ=255)
caacgcaGGTCGATGGCTGCGGATTGCGGATATTCTTCTTTGTCGATCCAGTTTTTGTTAATGGATAAAGCCATCAATTTGTGGACATTTTCGTCGTccc < 1:2669969/100‑1 (MQ=255)
caacgcaGGTCGATGGCTGCGGATTGCGGATATTCTTCTTTGTCGATCCAGTTTTTGTTAATGGATAAAGCCATCAATTTGTGGACATTTTCGTCGTccc > 1:4724006/1‑100 (MQ=255)
caacgcaGGTCGATGGCTGCGGATTGCGGATATTCTTCTTTGTCGATCCAGTTTTTGTTAATGGATAAAGCCATCAATTTGTGGACATTTTCGTCGTccc < 2:3721356/100‑1 (MQ=255)
aacgcaGGTCGATGGCTGCGGATTGCGGATATTCTTCTTTGTCGATCCAGTTTTTGTTAATGGATAAAGCCATCAATTTGTGGACATTTTCGTCGTCCCa > 1:1590711/1‑100 (MQ=255)
aacgcaGGTCGATGGCTGCGGATTGCGGATATTCTTCTTTGTCGATCCAGTTTTTGTTAATGGATAAAGCCATCAATTTGTGGACATTTTCGTCGTCCCa < 1:1178951/100‑1 (MQ=255)
cgcaGGTCGATGGCTGCGGATTGCGGATATTCTTCTTTGTCGCTCCAGTTTTTGTTAATGGATAAAGCCATCAATTTGTGGACATTTTCGTCGTCCCAgg < 1:5297656/100‑1 (MQ=255)
cgcaGGTCGATGGCTGCGGATTGCGGATATTCTTCTTTGTCGATCCAGTTTTTGTTAATGGATAAAGCCATCAATTTGTGGACATTTTCGTCGTCCCAgg < 2:2200202/100‑1 (MQ=255)
ggTCGATGGCTGCGGATTGCGGATATTCTTCTTTGTGGATGCAGTTTTTGTTAATGGATAAAGCCATCAATTTGTGGACATTTTCGTCGTCCCAGGTCTg > 2:5158671/1‑100 (MQ=17)
ggTCGATGGCTGCGGATTGCGGATATTCTTCTTTGTCGTTCCAGTTTTTGTTAATGGATAAAGCCATCAATTTGTGGACATTTTCGTCGTCCCAGGTCTg > 2:4484037/1‑100 (MQ=255)
ggTCGATGGCTGCGGATTGCGGATATTCTTCTTTGTCGATCCAGTTTTTGTTAATGGATAAAGCCATCAATTTGTGGACATTTTCGTCGTCCCAGGTCTg > 1:1079626/1‑100 (MQ=255)
ttgATGGCTGCGGATTGCGGATCTTCTTCTTTGTCGATCCACTTTTTGTTACTGCATAAAGCCATCAATTTGTGGAAATTTTCGTCGTCCCAGGTCTGGc < 2:1200666/98‑1 (MQ=17)
tCGATGGCTGCGGATTGCGGATATTCTTCTTTGTCGATCCAGTTTTTGTTAATGGATAAAGCCATCAATTTGTGGACATTTTCGTCGTCCCAGGTCTGGc < 2:392734/100‑1 (MQ=255)
tCGATGGCTGCGGATTGCGGATATTCTTCTTTGTCGATCCAGTTTTTGTTAATGGATAAAGCCATCAATTTGTGGACATTTTCGTCGTCCCAGGTCTGGc < 1:1769280/100‑1 (MQ=255)
tgATGGCTGCGGATTGCGGATATTCTTCTTGGTCGATCCAGTTTTTGTTAATGGATAAAGCCATGAATTTGTGGACATTTTCGTCGGCCCAGGTCTGGCa < 2:786489/99‑1 (MQ=17)
cGATGGCTGCGGATTGCGGATATTCTTCTTTGTCGATCCAGTTTTTGTTAATGGATAAAGCCATCAATTTGTGGACATTTTCGTCGTCCCAGGTCTGGCa < 1:2993779/100‑1 (MQ=255)
cGATGGCTGCGGATTGCGGATATTCTTCTTTGTCGATCCAGTTTTTGTTAATGGATAAAGCCATCAATTTGTGGACATTTTCGTCGTCCCAGGTCTGGCa > 2:80826/1‑100 (MQ=255)
tGGCTGCGGATTGCGGATATTCTTCTTTGTCGATCCAGTTTTTGTTAATGGATAAAGCCATCAATTTGTGGACATTTTCGTCGTCCCAGGTCTGGCAGaa < 2:1794572/100‑1 (MQ=255)
tcTGCGGATTGCGGATATTCTTCTTTGTCGATCCAGTTTTTGTTAATGGATAAAGCCATCAATTTGTGGACATTTTCGTCGTCCCAGGTCTGGCAGAAAg < 2:4398804/99‑1 (MQ=255)
gCTGCGGATTGCGGATATTCTTCTTTGTCGATCCAGTTTTTGTTAATGGATAAAGCCATCAATTTGTGGACATTTTCGTCGTCCCAGGTCTGGCAGAAAg < 1:890080/100‑1 (MQ=255)
gCTGCGGATTGCGGATATTCTTCTTTGTCGATCCAGTTTTTGTTAATGGATAAAGCCATCAATTTGTGGACATTTTCGTCGTCCCAGGTCTGGCAGAAAg < 1:5074634/100‑1 (MQ=255)
gCTGCGGATTGCGGATATTCTTCTTTGTCGATCCAGTTTTTGTTAATGGATAAAGCCATCAATTTGTGGACATTTTCGTCGTCCCAGGTCTGGCAGAAAg > 1:1863133/1‑100 (MQ=255)
tgcggattgcggatATTCTTCTTTGTCGATCCAGTTTTTGTTAATGGATAAAGCCATCAATTTGTGGACATTTTCGTCGTCCCAGGTCTGGCAGAAAGTg > 2:3868511/1‑100 (MQ=255)
ngattgcggatATTCTTCTTTGTCGATCCAGTTTTTGTTAATGGATAAAGCCATCAATTTGTGGACATTTTCGTCGTCCCAGGTCTGGCAGAAAGTGGcc > 1:1146201/2‑100 (MQ=255)
ggattgcggatATTCTTCTTTGTCGATCCAGTTTTTGTTAATGGATAAAGCCATCAATTTGTGGACATTTTCGTCGTCCCAGGTCTGGCAGAAAGTGGcn < 2:2395429/100‑2 (MQ=255)
gattgcggatATTCTTCTTTGTCGATCCAGTTTTTGTTAATGGATAAAGCCATCAATTTGTGGACATTTTCGTCGTCCCAGGTCTGGCAGAAAGTGGCCa < 1:5508849/100‑1 (MQ=255)
attgcggatATTCTTCTTTGTCGATCCAGTTTTTGTTAATGGATAAAGCCATCAATTTGTGGACATTTTCGTCGTCCCAGGTCTGGCAGAAAGTGGCCAg < 1:245885/100‑1 (MQ=255)
attgcggatATTCTTCTTTGTCGATCCAGTTTTTGTTAATGGATAAAGCCATCAATTTGTGGACATTTTCGTCGTCCCAGGTCTGGCAGAAAGTGGCCAg < 1:3963245/100‑1 (MQ=255)
attgcggatATTCTTCTTTGTCGATCCAGTTTTTGTTAATGGATAAAGCCATCAATTTGTGGACATTTTCGTCGTCCCAGGTCTGGCAGAAAGTGGCCAg < 2:3834073/100‑1 (MQ=255)
tcgcggatATTCTTCTTTGTCGATCCAGTTTTTGTTAATGGATAAAGCCATGAATTTGTGGACATTTTCGTCGTCCCAGGTCTGGCAGAAAGTGGCCAgg < 2:5473393/98‑1 (MQ=255)
tgcggatATTCTTCTTTGTCGATCCAGTTTTTGTTAATGGATAAAGCCATCAATTTGTGGACATTTTCGTCGTCCCAGGTCTGGCAGAAAGTGGCCAGGt < 2:4103570/100‑1 (MQ=255)
gcggatATTCTTCTTTGTCGATCCAGTTTTTTTTTTTTTTTTTAGCCATCAATTTGTGGACATTTTCGTCGTCCGAGGTCTGGCAGAAAGTGGTCAGCtt > 2:1710850/1‑100 (MQ=14)
cggatATTCTTCTTTGTCGATCCAGTTTTTGTTAATGGATAAAGCCATCAATTTGTGGACATTTTCGTCGTCCCAGGTCTGGCAGAAAGTGGCCAGGTTc > 1:980883/1‑100 (MQ=255)
ggatATTCTTCTTTGTCGATCCAGTTTTTGTTAATGGATAAAGCCATCAATTTGTGGACATTTTCGTCGTCCCAGGTCTGGCAGAAAGTGGCCAGGTTCt < 2:1873617/100‑1 (MQ=255)
ggatATTCTTCTTTGTCGATCCAGTTTTTGTTAATGGATAAAGCCATCAATTTGTGGACATTTTCGTCGTCCCAGGTCTGGCAGAAAGTGGCCAGGTTCt > 1:3794708/1‑100 (MQ=255)
gatATTCTTCTTTGTCGATCCAGTTTTTGTTAATGGATAAAGCCATCAATTTGTGGACATTTTCGTCGTCCCAGGTCTGGCAGAAAGTGGCCAGGTTCTg > 1:3029330/1‑100 (MQ=255)
tatTCTTCTTTGTCGATCCAGTTTTTGTTAATGGATAAAGCCATCAATTTGTGGACATTTTCGTCGTCCCAGGTCTGGCAGAAAGTGGCCAGGTTCTGAc < 1:1488832/100‑1 (MQ=255)
tatTCTTCTTTGTCGATCCAGTTTTTGTTAATGGATAAAGCCATCAATTTGTGGACATTTTCGTCGTCCCAGGTCTGGCAGAAAGTGGCCAGGTTCTGAc < 2:3572407/100‑1 (MQ=255)
ttcttcTTTGTCGATCCAGTTTTTGTTAATGGATAAAGCCATCAATTTGTGGACATTTTCGTCGTCCCAGGTCTGGCAGAAAGTGGCCAGGTTCTGACGa > 2:688819/1‑100 (MQ=255)
cttcttTGTCGATCCAGTTTTTGTTAATGGATAAAGCCGTCAATTTGTGGACATTTTCGTCGTCCCAGGTCTGGCAGAAAGTGGCCAGGTTCTGACGAGc > 1:4937222/1‑100 (MQ=255)
cttcttTGTCGATCCAGTTTTTGTTAATGGATAAAGCCATCAATTTGTGGACATTTTCGTCGTCCCAGGTCTGGCAGAAAGTGGCCAGGTTCTGACGAGc > 1:5400727/1‑100 (MQ=255)
tcttTGTCGATCCAGTTTTTGTTAATGGATAAAGCCATCAATTTGTGGACATTTTCGTCGTCCCAGGTCTGGCAGAAAGTGGCCAGGTTCTGACGAGCGt < 1:4133258/100‑1 (MQ=255)
tttGTCGATCCAGTTTTTGTTAATGGATAAAGCCATCAATTTGTGGACATTTTCGTCGTCCCAGGTCTGGCAGAAAGTGGCCAGGTTCTGACGAGCGTTg < 2:3215761/100‑1 (MQ=255)
ttGTCGATCCAGTTTTTGTTAATGGATAAAGCCATCAATTTGTGGACATTTTCGTCGTCCCAGGTCTGGCAGAAAGTGGCCAGGTTCTGACGAGCGTTGc > 1:145644/1‑100 (MQ=255)
ttGTCGATCCAGTTTTTGTTAATGGATAAAGCCATCAATTTGTGGACATTTTCGTCGTCCCAGGTCTGGCAGAAAGTGGCCAGGTTCTGACGAGCGTTGc < 1:697349/100‑1 (MQ=255)
gTCGATCCAGTTTTTGTTAATGGATAAAGCCATCAATTTGTGGACATTTTCGTCGTCCCAGGTCTGGCAGAAAGTGGCCAGGTTCTGACGAGCGTTGCCa < 1:3449413/100‑1 (MQ=255)
cGATCCAGTTTTTGTTAATGGATAAAGCCATCAATTTGTGGACATTTTCGTCGTCCCAGGTCTGGCAGAAAGTGGCCAGGTTCTGACGAGCGTTGCCATc > 2:903447/1‑100 (MQ=255)
cGATCCAGTTTTTGTTAATGGATAAAGCCATCAATTTGTGGACATTTTCGTCGTCCCAGGTCTGGCAGAAAGTGGCCAGGTTCTGACGAGCGTTGCCATc > 2:3118689/1‑100 (MQ=255)
cGATCCAGTTTTTGTTAATGGATAAAGCCATCAATTTGTGGACATTTTCGTCGTCCCAGGTCTGGCAGAAAGTGGCCAGGTTCTGACGAGCGGTGCCATc > 1:256911/1‑100 (MQ=255)
gATCCAGTTTTTGTTAATGGATAAAGCCATCAATTTGTGGACATTTTCGTCGTCCCAGGTCTGGCAGAAAGTGGCCAGGTTCTGACGAGCGTTGCCATCa > 2:2173047/1‑100 (MQ=255)
gATCCAGTTATTGTTAATGGATAAAGCCATCAATTTGTGGACATTTTCGTCGTCCCAGGTCTGGCAGAAAGTGGCCAGGTTCTGACGAGCGTTGCCATCa > 2:5341431/1‑100 (MQ=255)
aTCCAGTTTTTGTTAATGGATAAAGCCATCAATTTGTGGACATTTTCGTCGTCCCAGGTCTGGCAGAAAGTGGCCAGGTTCTGACGAGCGTTGCCATCaa > 1:1350989/1‑100 (MQ=255)
aTCCAGTTTTTGTTAATGGATAAAGCCATCAATTTGTGGACATTTTCGTCGTCCCAGGTCTGGCAGAAAGTGGCCAGGTTCTGACGAGCGTTGCCATCaa < 1:3617561/100‑1 (MQ=255)
tCCAGTTTTTGTTAATGGATAAAGCCATCAATTTGTGGACATTTTCGTCGTCCCAGGTCTGGCAGAAAGTGGCCAGGTTCTGACGAGCGTTGCCATCAAg < 2:2760064/100‑1 (MQ=255)
tCCAGTTTTTGTTAATGGATAAAGCCATCAATTTGTGGACATTTTCGTCGTCCCAGGTCTGGCAGAAAGTGGCCAGGTTCTGACGAGCGTTGCCATCAAg > 2:751067/1‑100 (MQ=255)
cAGTTTTTGTTAATGGATAAAGCCATCAATTTGTGGACATTTTCGTCGTCCCAGGTCTGGCAGAAAGTGGCCAGGTTCTGACGAGCGTTGCCATCAAGat < 1:1298948/100‑1 (MQ=255)
aGTTTTTGTTAATGGATAAAGCCATCAATTTGTGGACATTTTCGTCGTCCCAGGTCTGGCAGAAAGTGGCCAGGTTCTGACGAGCGTTGCCATCAAGata < 2:1515652/100‑1 (MQ=255)
tttttGTTAATGGATAAAGCCATCAATTTGTGGACATTTTCGTCGTCCCAGGTCTGGCAGAAAGTGGCCAGGTTCTGACGAGCGTTGCCATCAAGAtata < 2:2261520/100‑1 (MQ=255)
tGTTAATGGATAAAGCCATCAATTTGTGGACATTTTCGTCGTCCCAGGTCTGGCAGAAAGTGGCCAGGTTCTGACGAGCGTTGCCATCAAGATATTATTc < 2:4676079/100‑1 (MQ=255)
ttAATGGATACAGCCATCTATTTGTGGAACTTTTCGTAGTCCCAGGTCTGGCAGAAAGTGGCCAGGTTCTGACGCGCGTTGCCATCAAGATATAATTCGt < 2:1626979/100‑1 (MQ=14)
ttAATGGATAAAGCCATCAATTTGTGGACATTTTCGTCGTCCCAGGTCTGGCAGAAAGTGGCCAGGTTCTGACGAGCGTTGCCATCAAGATATAATTCGt > 2:337431/1‑100 (MQ=255)
tAATGGATAAAGCCATCAATTTGTGGACATTTTCGTCGTCCCAGGTCTGGCAGAAAGTGGCCAGGTTCTGACGAGCGTTGCCATCAAGATATAATTCGTc > 2:3191182/1‑100 (MQ=255)
aaTGGATAAAGCCATCAATTTGTGGACATTTTCGTCGTCCCAGGTCTGGCAGAAAGTGGCCAGGTTCTGACGAGCGTTGCCATCAAGATATAATTCGTCa > 2:1817516/1‑100 (MQ=255)
aaTGGATAAAGCCATCAATTTGTGGACATTTTCGTCGTCCCAGGTCTGGCAGAAAGTGGCCAGGTTCTGACGAGCGTTGCCATCAAGATATAATTCGTCa > 2:1421564/1‑100 (MQ=255)
aaTGGATAAAGCCATCAATTTGTGGACATTTTCGTCGTCCCAGGTCTGGCAGAAAGTGGCCAGGTTCTGACGAGCGTTGCCATCAAGATATAATTCGTCa > 1:4630517/1‑100 (MQ=255)
aaTGGATAAAGCCATCAATTTGTGGACATTTTCGTCGTCCCAGGTCAGGCAGAAAGTGGCCAGGTTCTGACGAGCGTTGCCATCAAGATATAATTCGTCa > 1:5373066/1‑100 (MQ=255)
aTGGATAAAGCCATCAATTTGTGGACATTTTCGTCGTCCCAGGTCTGGCAGAAAGTGGCCAGGTTCTGACGAGCGTTGCCATCAAGATATAATTCGTCAt < 1:2238461/100‑1 (MQ=255)
tGGATAAAGCCATCAATTTGTGGACATTTTCGTCGTCCCAGGTCTGGCAGAAAGTGGCCAGGTTCTGACGAGCGTTGCCATCAAGATATAATTCGTCAtt > 1:4165207/1‑100 (MQ=255)
ggATAAATCCATCAATTTGTGGACATTTTCGTCGTCCCAGGTCTGGCAGAAAGTGGCCAGGTTCTGACGAGCGTTGCCATCAAGATATAATTCGTCATTg < 1:2319082/100‑1 (MQ=255)
ggATAAAGCCATCAATTTGTGGACATTTTCGTCGTCCCAGGTCTGGCAGAAAGTGGCCAGGTTCTGACGAGCGTTGCCATCAAGATATAATTCGTCATTg < 1:5230110/100‑1 (MQ=255)
ggATAAAGCCATCAATTTGTGGACATTTTCGTCGACCCAGGTCTGGCAGAAAGAGGCCAGGTTCTGACGAGCGTAGCCATCAAGATATAATTCGTCATTg > 1:5173388/1‑100 (MQ=17)
gATAAAGCCATCAATTTGTGGACATTTTCGTCGTCCCAGGTCTGGCAGAAAGTGGCCAGGTTCTGACGAGCGTTGCCATCAAGATATAATTCGTCATTGa < 2:4230255/100‑1 (MQ=255)
aTAAAGCCATCAATTTGTGGACATTTTCGTCGTCCCAGGTCTGGCAGAAAGTGGCCAGGTTCTGACGAGCGTTGCCATCAAGATATAATTCGTCATTGAt < 2:2534553/100‑1 (MQ=255)
tAAAGCCATCAATTTGTGGACATTTTCGTCGTCCCAGGTCTGGCAGAAAGTGGCCAGGTTCTGACGAGCGTTGCCATCAAGATATAATTCGTCATTGATa > 2:4349273/1‑100 (MQ=255)
|
ATGCCACAGATCGGCAACCATATTTACGCAACGCAGGTCGATGGCTGCGGATTGCGGATATTCTTCTTTGTCGATCCAGTTTTTGTTAATGGATAAATCCATCAATTTGTGGACATTTTCGTCGTCCCAGGTCTGGCAGAAAGTGGCCAGGTTCTGACGAGCGTTGCCATCAAGATATAATTCGTCATTGATA > NC_000913/1571719‑1571911
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
