Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A3 F412 I3 R1 53 201.3 10250884 92.1% 9441064 100.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 2,090,136 (G)5→6 intergenic (+90/‑56) hisL → / → hisG his operon leader peptide/ATP phosphoribosyltransferase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009132,090,1311.G91.0% 577.3 / 53.4 177intergenic (+85/‑61)hisL/hisGhis operon leader peptide/ATP phosphoribosyltransferase
Reads supporting (aligned to +/- strand):  ref base . (8/8);  new base G (81/80);  total (89/88)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 202 total aligned reads displayed.

CATCATCCTGACTAGTCTTTCAGGCGATGTGTGCTGGAAGACATTCAGATCTTCCAGTGGTGCATGAACGCATGAGAAAG‑CCCCCGGAAGATCACCTTCC‑GGG‑GGCTTTTTTATTGCGCGGTTGATAACGGTTCAGACAGGTTTAAAGAGGAATAACAAAATGACAGACAACACTCGTTTACGCATAGCTATGCAGA  >  NC_000913/2090032‑2090228
                                                                                                     |                                                                                                  
 atcatcCTGACTAGTCTTTCAGGCGATGTGTGCTGGAAGACATTCAGATCTTCCAGTGGTGCATGAACGCATGAGAAAG‑CCCCCGGAAGATCACCTTCC‑g                                                                                                   >  1:3557182/1‑100 (MQ=255)
  tcatcCTGACTAGTCTTTCAGGCGATGTGTGCTGGAAGACATTCAGATCTTCCAGTGGTGCATGAACGCATGAGAAAG‑CCCCCGGAAGATCACCTTCC‑gg                                                                                                  <  1:194093/100‑1 (MQ=255)
    atcCTGACTAGTCTTTCAGGCGATGTGTGCTGGAAGACATTCAGATCTTCCAGTGGTGCATGAACGCATGAGAAAG‑CCCCCGGAAGATCACCTTCC‑ggg‑g                                                                                               <  1:1308093/100‑1 (MQ=255)
    atcCTGACTAGTCTTTCAGGCGATGTGTGCTGGAAGACATTCAGATCTTCCAGTGGTGCATGAACGCATGAGAAAG‑CCCCCGGAAGATCACCTTCC‑ggg‑g                                                                                               >  1:1622225/1‑100 (MQ=255)
    atcCTGACTAGTCTTTCAGGCGATGTGTGCTGGAAGACATTCAGATCTTCCAGTGGTGCATGAACGCATGAGAAAG‑CCCCCGGAAGATCACCTTCC‑ggg‑g                                                                                               >  2:3667941/1‑100 (MQ=255)
    atcCTGACTAGTCTTTCAGGCGATGTGTGCTGGAAGACATTCAGATCTTCAAGTGGTGCATGAACGCATGAGAAAG‑CCCCCGGAAGATCACCTTCC‑ggg‑g                                                                                               >  2:1471443/1‑100 (MQ=255)
     tcCTGACTAGTCTTTCAGGCGATGTGTGCTGGAAGACATTCAGATCTTCCAGTGGTGCATGAACGCATGAGAAAG‑CCCCCGGAAGGTGATCTTCC‑ggg‑gg                                                                                              <  1:4259877/100‑1 (MQ=38)
     tcCTGACTAGTCTTTCAGGCGATGTGTGCTGGAAGACATTCAGATCTTCCAGTGGTGCATGAACGCATGAGAAAG‑CCCCCGGAAGATCACCTTCC‑ggg‑gg                                                                                              <  2:4492012/100‑1 (MQ=255)
      ccTGACTAGTCTTTCAGGCGATGTGTGCTGGAAGACATTCAGATCTTCCAGTGGTGCATGAACGCATGAGAAAGCCCCCCGGAAGGTGATCTTCC‑ggg‑gg                                                                                              >  1:226825/1‑100 (MQ=255)
      ccTGACTAGTCTTTCAGGCGATGTGTGCTGGAAGACATTCAGATCTTCCAGTGGTGCATGAACGCATGAGAAAG‑CCCCCGGAAGATCACCTTCC‑ggg‑ggg                                                                                             <  1:2149044/100‑2 (MQ=255)
       cTGACTAGTCTTTCAGGCGATGTGTGCTGGAAGACATTCAGATCTTCCAGTGGTGCATGAACGCATGAGAAAG‑CCCCCGGAAGATCACCTTCC‑ggg‑gggc                                                                                            <  2:938443/100‑3 (MQ=255)
        tGACTAGTCTTTCAGGCGATGTGTGCTGGTAGACATTCAGATCTTCCAGTGGTGCATGGACGCATGAGAAAG‑CCCCCGGAAGATCACCTTCC‑ggg‑gggct                                                                                           <  2:4834623/100‑4 (MQ=255)
        tGACTAGTCTTTCAGGCGATGTGTGCTGGAAGACATTCAGATCTTCCAGTGGTGCATGAACGCATGAGAAAGCCCCCCGGAAGGTGATCTTCC‑GGG‑GGCt                                                                                            <  2:4391278/100‑1 (MQ=38)
        tGACTAGTCGTTCAGGCGATGTGTGCTGGAAGACATTCAGATCTTCCAGTGGTGCATGAACGCATGAGAAAGCCCCCCGGAAGGTGATCTTCC‑GGG‑GGCt                                                                                            <  2:4063648/100‑1 (MQ=38)
             aGTCTTTCAGGCGATGTGTGCTGGAAGACATTCAGATCTTCCAGTGGTGCATGAACGCATGAGAAAG‑CCCCCGGAAGATCACCTTCCGGGG‑GGCtttttt                                                                                       <  2:1019355/100‑1 (MQ=255)
             aGTCTTTCAGGCGATGTGTGCTGGAAGACATTCAGATCTTCCAGTGGTGCATGAACGCATGAGAAAG‑CCCCCGGAAGATCACCTTCCGGGG‑GGCtttttt                                                                                       >  2:2466957/1‑100 (MQ=255)
                cTTTCAGGCGATGTGTGCTGGAAGACATTCAGATCTTCCAGTGGTGCATGAACGCATGAGAAAG‑CCCCCGGAAGATCACCTTCCGGGG‑GGCTTTTTTAtt                                                                                    <  2:2364556/100‑1 (MQ=255)
                cTTTCAGGCGATGTGTGCTGGAAGACATTCAGATCTTCCAGTGGTGCATGAACGCATGAGAAAG‑CCCCCGGAAGATCACCTTCCGGGG‑GGCTTTTTTAtt                                                                                    <  1:5085840/100‑1 (MQ=255)
                 tttCAGGCGATGTGTGCTGGAAGACATTCAGATCTTCCAGTGGTGCATGAACGCATGAGAAAG‑CCCCCGGAAGATCACCTTCCGGGG‑GGCTTTTTTATTg                                                                                   >  1:2948362/1‑100 (MQ=255)
                 tttCAGGCGATGTGTGCTGGAAGACATTCAGATCTTCCAGTGGTGCATGAACGCATGAGAAAG‑CCCCCGGAAGATCACCTTCCGGGG‑GGCTTTTTTATTg                                                                                   <  2:266996/100‑1 (MQ=255)
                    gaGGCGATGTGTGCTGGAAGACATTCAGATCTTCCAGTGGTGCATGAACGCCTGAGAAAG‑CCCCCGGAAGATCACCTTCCGGGG‑GGCCTTTTTATTgcgg                                                                                >  2:2764050/2‑99 (MQ=255)
                    cacgCGATGTGTGCTGGAAGACATTCAGATCTTCCAGTGGTGCATGAACGCATGAGAAAG‑CCCCCGGAAGATCACCTTCCGGGG‑GGCTTTTTTATTgcgc                                                                                >  1:1749709/4‑100 (MQ=255)
                    cAGGCGATGTGTGCTGGAAGACATTCAGATCTTCCAGTGGTGCATGAACGCATGAGAAAG‑CCCCCGGAAGATCACCTTCCGGGG‑GGCTTTTTTATTgcgc                                                                                >  2:3600371/1‑100 (MQ=255)
                      ggCGATGTGTGCTGGAAGACATTCAGATCTTCCAGTGGTGCATGAACGCATGAGAAAG‑CCCCCGGAAGATCACCTTCCGGGG‑GGCTTTTTTATTGCGCgg                                                                              <  2:113209/100‑1 (MQ=255)
                       gCGATGTGTGCTGGAAGACATTCAGATCTTCCAGTGGTGCATGAACGCATGAGAAAG‑CCCCCGGAAGATCACCTTCCGGGG‑GGCTTTTTTATTGCGCGGt                                                                             <  1:4671374/100‑1 (MQ=255)
                        cGATGTGTGCTGGAAGACATTCAGATCTTCCAGTGGTGCATGAACGCATGAGAAAG‑CCCCCGGAAGATCACCTTCCGGGG‑GGCTTTTTTATTGCGCGGtt                                                                            <  1:2696925/100‑1 (MQ=255)
                         gATGTGTGCTGGAAGACATTCAGATCTTCCAGTGGTGCATGAACGCATGAGAAAG‑CCCCCGGAAGATCACCTTCCGGGG‑GGCTTTTTTATTGCGCGGTTg                                                                           <  1:4956288/100‑1 (MQ=255)
                         gATGTGTGCTGGAAGACATTCAGATCTTCCAGTGGTGCATGAACGCATGAGAAAG‑CCCCCGGAAGATCACCTTCCGGGG‑GGCTTTTTTATTGCGCGGTTg                                                                           <  2:4659474/100‑1 (MQ=255)
                         gATGTGTGCTGGAAGACATTCAGATCTTCCAGTGGTGCATGAACGCATGAGAAAG‑CCCCCGGAAGATCACCTTCCGGGG‑GGCTTTTTTATTGCGCGGTTg                                                                           <  1:1492726/100‑1 (MQ=255)
                           tgtgtgCTGGAAGACATTCAGATCTTCCAGTGGTGCATGAACGCATGAGAAAG‑CCCCCGGAAGATCACCTTCCGGGG‑GGCTTTTTTATTGCGCGGTTGAt                                                                         <  2:2191441/100‑1 (MQ=255)
                           tgtgtgCTGGAAGACATTCAGATCTTCCAGTGGTGCATGAACGCATGAGAAAG‑CCCCCGGAAGATCACCTTCCGGGG‑GGCTTTTTTATTGCGCGGTTGAt                                                                         <  1:474490/100‑1 (MQ=255)
                            gtgtgCTGGAAGACATTCAGATCTTCCAGTGGTGCATGAACGCATGAGAAAG‑CCCCCGGAAGATCACCTTCCGGGG‑GGCTTTTTTATTGCGCGGTTGATa                                                                        >  2:1094379/1‑100 (MQ=255)
                            gtgtgCTGGAAGACATTCAGATCTTCCAGTGGTGCATGAACGCATGAGAAAG‑CCCCCGGAAGATCACCTTCCGGGG‑GGCTTTTTTATTGCGCGGTTGATa                                                                        <  2:19883/100‑1 (MQ=255)
                               tgCTGGAAGACATTCAGATCTTCCAGTGGTGCATGAACGCATGAGAAAG‑CCCCCGGAAGATCACCTTCCGGGG‑GGCTTTTTTATTGCGCGGTTGATAACg                                                                     >  1:4388148/1‑100 (MQ=255)
                                 cTGGAAGACATTCAGATCTTCCAGTGGTGCATGAACGCATGAGAAAG‑CCCCCGGAAGATCACCTTCCGGGG‑GGCTTTTTTATTGCGCGGTTGATAACGGt                                                                   <  2:2797400/100‑1 (MQ=255)
                                   ggAAGACATTCAGATCTTCCAGTGGTGCATGAACGCATGAGAAAG‑CCCCCGGAAGATCACCTTCCGGGG‑GGCTTTTTTATTGCGCGGTTGATAACGGTTc                                                                 <  2:1599937/100‑1 (MQ=255)
                                   ggAAGACATTCAGATCTTCCAGTGGTGCATGAACGCATGAGAAAG‑CCCCCGGAAGATCACCTTCCGGGG‑GGCTTTTTTATTGCGCGGTTGATAACGGTTc                                                                 <  1:3640141/100‑1 (MQ=255)
                                   ggAAGACATTCAGATCTTCCAGTGGTGCATGAACGCATGAGAAAG‑CCCCCGGAAGATCACCTTCCGGGG‑GGCTTTTTTATTGCGCGGTTGATAACGGTTc                                                                 <  1:201594/100‑1 (MQ=255)
                                     aaGACATTCAGATCTTCCAGTGGTGCATGAACGCATGAGAAAG‑CCCCCGGAAGATCACCTTCCGGGG‑GGCTTTTTTATTGCGCGGTTGATAACGGTTCAg                                                               <  1:1838546/100‑1 (MQ=255)
                                         cATTCAGATCTTCCAGTGGTGCATGAACGCATGAGAAAG‑CCCCCGGAAGATCACCTTCCGGGG‑GGCTTTTTTATTGCGCGGTTGATAACGGTTCAGACAg                                                           >  2:2594508/1‑100 (MQ=255)
                                          aTTCAGATCTTCCAGTGGTGCATGAACGCATGAGAAAG‑CCCCCGGAAGATCACCTTCCGGGG‑GGCTTTTTTATTGCGCGGTTGATAACGGTTCAGACAgg                                                          <  2:65786/100‑1 (MQ=255)
                                          aTTCAGATCTTCCAGTGGTGCATGAACGCATGAGAAAG‑CCCCCGGAAGATCACCTTCCGGGG‑GGCTTTTTTATTGCGCGGTTGATAACGGTTCAGACAgg                                                          >  1:1593164/1‑100 (MQ=255)
                                            tCAGATCTTCCAGTGGTGCATGAACGCATGAGAAAG‑CCCCCGGAAGATCACCTTCCGGGG‑GGCTTTTTTATTGCGCGGTTGATAACGGTTCAGACAGGtt                                                        >  1:3508483/1‑100 (MQ=255)
                                             cAGATCTTCCAGTGGTGCATGAACGCATGAGAAAG‑CCCCCGGAAGATCACCTTCCGGGG‑GGCTTTTTTATTGCGCGGTTGATAACGGTTCAGACAGGttt                                                       <  2:2147867/100‑1 (MQ=255)
                                             cAGATCTTCCAGTGGTGCATGAACGCATGAGAAAG‑CCCCCGGAAGATCACCTTCCGGGG‑GGCTTTTTTATTGCGCGGTTGATAACGGTTCAGACAGGttt                                                       >  1:4713503/1‑100 (MQ=255)
                                              aGATCTTCCAGTGGTGCATGAACGCATGAGAAAG‑CCCCCGGAAGATCACCTTCCGGGG‑GGCTTTTTTATTGCGCGGTTGATAACGGTTCAGACAGGTTTa                                                      >  1:3308058/1‑100 (MQ=255)
                                              aGATCTTCCAGTGGTGCATGAACGCATGAGAAAG‑CCCCCGGAAGATCACCTTCCGGGG‑GGCTTTTTTATTGCGCGGTTGATAACGGTTCAGACAGGTTTa                                                      <  2:3698726/100‑1 (MQ=255)
                                              aGATCGGCCAGTGGTGCATGAGCGCATGAGAAAG‑CCCCCGGAAGATGACCTTTCGGGG‑GGCTTTTTTATTGCGCGGTTGATAACGGTTCAGACAGGTTTa                                                      <  2:4749882/100‑1 (MQ=255)
                                               gATCTTCCAGTGGTGCATGAACGCATGAGAAAG‑CCCCCGGAAGATCACCTTCCGGGG‑GGCTTTTTTATTGCGCGGTTGATAACGGTTCAGACAGGTTTaa                                                     <  1:4988116/100‑1 (MQ=255)
                                                aTCTTCCAGTGGTGCATGAACGCATGAGAAAG‑CCCCCGGAAGATCACCTTCCGGGG‑GGCTTTTTTATTGCGCGGTTGATAACGGTTCAGACAGGTTTaaa                                                    >  1:1013960/1‑100 (MQ=255)
                                                aTCTTCCAGTGGTGCATGAACGCATGAGAAAG‑CCCCCGGAAGATCACCTTCCGGGG‑GGCTTTTTTATTGCGCGGTTGATAACGGTTCAGACAGGTTTaaa                                                    <  1:2182809/100‑1 (MQ=255)
                                                  cTTCCAGTGGTGCATGAACGCATGAGAAAG‑CCCCCGGAAGATCACCTTCCGGGG‑GGCTTTTTTATTGCGCGGTTGATAACGGTTCAGACAGGTTTAAaga                                                  <  2:4744746/100‑1 (MQ=255)
                                                   ttCCAGTGGTGCATGAACGCATGAGAAAG‑CCCCCGGAAGATCACCTTCCGGGG‑GGCTTTTTTATTGCGCGGTTGATAACGGTTCAGACAGGTTTAAagag                                                 >  2:2574723/1‑100 (MQ=255)
                                                    tCCAGTGGTGCATGAACGCATGAGAAAG‑CCCCCGGAAGATCACCTTCCGGGG‑GGCTTTTTTATTGCGCGGTTGATAACGGTTCAGACAGGTTTAAAGAgg                                                <  2:778936/100‑1 (MQ=255)
                                                    tCCAGTGGTGCATGAACGCATGAGAAAG‑CCCCCGGAAGATCACCTTCCGGGG‑GGCTTTTTTATTGCGCGGTTGATAACGGTTCAGACAGGTTTAAAGAgg                                                >  1:3757680/1‑100 (MQ=255)
                                                     ccAGTGGTGCATGAACGCATGAGAAAG‑CCCCCGGAAGATCACCTTCCGGGG‑GGCTTTTTTATTGCGCGGTTGATAACGGTTCAGACAGGTTTAAAGAGGa                                               >  1:380598/1‑100 (MQ=255)
                                                      cAGTGGTGCATGAACGCATGAGAAAG‑CCCCCGGAAGATCACCTTCCGGGG‑GGCTTTTTTATTGCGCGGTTGATAACGGTTCAGACAGGTTTAAAGAGGaa                                              >  2:3520439/1‑100 (MQ=255)
                                                      cAGTGGTGCATGAACGCATGAGAAAG‑CCCCCGGAAGATCACCTTCCGGGG‑GGCTTTTTTATTGCGCGGTTGATAACGGTTCAGACAGGTTTAAAGAGGaa                                              >  2:1780552/1‑100 (MQ=255)
                                                      cAGTGGTGCATGAACGCATGAGAAAG‑CCCCCGGAAGATCACCTTCC‑GGGAGGCTTTTTTATTGCGCGGTTGATAACGGTTCAGACAGGTTTAAAGAGGaa                                              <  1:848756/100‑1 (MQ=255)
                                                       aGTGGTGCATGAACGCATGAGAAAG‑CCCCCGGAAGATCACCTTCCGGGG‑GGCTTTTTTATTGCGCGGTTGATAACGGTTCAGACAGGTTTAAAGAGGAAt                                             >  1:1447601/1‑100 (MQ=255)
                                                          ggtgCATGAACGCATGAGAAAG‑CCCCCGGAAGATCACCTTCCGGGG‑GGCTTTTTTATTGCGCGGTTGATAACGGTTCAGACAGGTTTAAAGAGGAATAAc                                          <  2:4264526/100‑1 (MQ=255)
                                                          ggtgCATGAACGCATGAGAAAG‑CCCCCGGAAGATCACCTTCCGGGG‑GGCTTGTTTATTGCGCGGTTGATAACGGTTCAGACAGGTTTAAAGAGGAATAAc                                          >  2:4599507/1‑100 (MQ=255)
                                                            tgCATGAACGCATGAGAAAG‑CCCCCGGAAGATCACCTTCCGGGG‑GGCTTTTTTATTGCGCGGTTGATAACGGTTCAGACAGGTTTAAAGAGGAATAACaa                                        <  2:119043/100‑1 (MQ=255)
                                                             gCATGAACGCATGAGAAAG‑CCCCCGGAAGATCACCTTCCGGGG‑GGCTTTTTTATTGCGCGGTTGATAACGGTTCAGACAGGTTTAAAGAGGAATAACaaa                                       >  1:1208900/1‑100 (MQ=255)
                                                             gCATGAACGCATGAGAAAG‑CCCCCGGAAGATCACCTTCCGGGG‑GGCTTTTTTATTGCGCGGTTGATAACGGTTCAGACAGGTTTAAAGAGGAATAACaaa                                       >  2:3117677/1‑100 (MQ=255)
                                                              cATGAACGCATGAGAAAG‑CCCCCGGAAGATCACCTTCCGGGG‑GGCTTTTTTATTGCGCGGTTGCTAACGGTTCAGACAGGTTTAACGAGGAATAACaaaa                                      >  1:1781157/1‑100 (MQ=255)
                                                                tGAACGCATGAGAAAG‑CCCCCGGAAGATCACCTTCCGGGG‑GGCTTTTTTATTGCGCGGTTGATAACGGTTCAGACAGGTTTAAAGAGGAATAACAAAATg                                    <  1:2294530/100‑1 (MQ=255)
                                                                   actcATGAGAAAG‑CCCCCGGAAGATCACCTTCCGGGG‑GGCTTTTTTATTGCGCGGTTGATAACGTTTCAGACAGGTTTAAAGAGGAATAACAAAATgaca                                 <  1:5155642/97‑1 (MQ=255)
                                                                   aCGCATGAGAAAG‑CCCCCGGAAGATCACCTTCCGGGG‑GGCTTTTTTATTGCGCGGTTGATAACCGTTCAGAAAGGTTTAAAGAGGAATAACAAAATgaca                                 >  2:3327791/1‑100 (MQ=255)
                                                                    cGCATGAGAAAG‑CCCCCGGAAGATCACCTTCCGGGG‑GGCTTTTTTATTGCGCGGTTGATAACGGTTCAGACAGGTTTAAAGAGGAATAACAAAATggcag                                >  1:4706953/1‑100 (MQ=255)
                                                                    cGCATGAGAAAG‑CCCCCGGAAGATCACCTTCCGGGG‑GGCTTTTTTATTGCGCGGTTGATAACGGTTCAGACAGGTTTAAAGAGGAATAACAAAATgacag                                <  2:243497/100‑1 (MQ=255)
                                                                     gCATGAGAAAG‑CCCCCGGAAGATCACCTTCCGGGG‑GGCTTTTTTATTGCGCGGTTGATAACGGTTCAGACAGGTTTAAAGAGGAATAACAAAATgacaga                               <  1:4495136/100‑1 (MQ=255)
                                                                      cATGAGAAAG‑CCCCCGGAAGATCACCTTCCGGGG‑GGCTTTTTTATTGCGCGGTTGATAACGGTTCAGACAGGTTTAAAGAGGAATAACAAAATgacagac                              <  2:3271391/100‑1 (MQ=255)
                                                                       aTGAGAAAG‑CCCCCGGAAGATCACCTTCCGGGG‑GGCTTTTTTATTGCGCGGTTGATAACGGTTCAGACAGGTTTAAAGAGGAATAACAAAATgacagaca                             <  2:1427703/100‑1 (MQ=255)
                                                                        tGAGAAAG‑CCCCCGGAAGATCACCTTCCGGGG‑GGCTTTTTTATTGCGCGGTTGATAACGGTTCAGACAGGTTTAAAGAGGAATAACAAAATGACAGacaa                            >  2:2935908/1‑100 (MQ=255)
                                                                         gagaAAG‑CCCCCGGAAGATCACCTTCCGGGG‑GGCTTTTTTATTGCGCGGTTGATAACGGTTCAGACAGGTTTAAAGAGGAATAACAAAATGACAGacaac                           <  2:3440182/100‑1 (MQ=255)
                                                                         gagaAAG‑CCCCCGGAAGATCACCTTCCGGGG‑GGCTTTTTTATTGCGCGGTTGATAACGGTTCAGACAGGTTTAAAGAGGAATAACAAAATGACAGacaac                           >  2:325290/1‑100 (MQ=255)
                                                                               gccccccGGAAGGTGATCTTCC‑GGG‑GGCTTTTTTATTGCGCGGTTGATAACGGTTCAGACAGGTTTAAAGAGGAATAACAAAATGACAGACAACACTCGt                     >  2:3746627/3‑100 (MQ=38)
                                                                               gccccccGGAAGGTGATCTTCC‑GGG‑GGCTTTTTTATTGCGCGGTTGATAACGGTTCAGACAGGTTTAAAGAGGAATAACAAAATGACAGACAACACTCGt                     >  1:3370491/3‑100 (MQ=38)
                                                                                 cccccGGAAGATCACCTTCCGGGG‑GGCTTTTTTATTGCGCGGTTGATAACGGTTCAGACAGGTTTAAAGAGGAATAACAAAATGACAGACAACACTCGtt                    <  2:1571079/100‑1 (MQ=255)
                                                                                  ccccGGAAGGTGATCTTCC‑GGG‑GGCTTTTTTATTGCGCGGTTGATAACGGTTCAGACAGGTTTAAAGAGGAATAACAAAATGACAGACAACACTCGTTTa                  >  1:3201407/1‑100 (MQ=39)
                                                                                  ccccGGAAGGTGATCTTCC‑GGG‑GGCTTTTTTATTGCGCGGTTGATAACGGTTCAGACAGGTTTAAAGAGGAATAACAAAATGACAGACAACACTCGTTTa                  >  1:4170852/1‑100 (MQ=39)
                                                                                  ccccGGAAGATCACCTTCCGGGG‑GGCTTTTTTATTGCGCGGTTGATAACGGTTCAGACAGGTTTAAAGAGGAATAACAAAATGACAGACAACACTCGttt                   >  1:2646774/1‑100 (MQ=255)
                                                                                  ccccGGAAGATCACCTTCCGGGG‑GGCTTTTTTATTGCGCGGTTGATAACGGTTCAGAAAGGTTTAAAGAGGAATAACAAAATGACAGACAACACTCGttt                   >  2:4176296/1‑100 (MQ=255)
                                                                                   cccGGAAGGTGATCTTCCGGGG‑GGCTTTTTTATTGCGCGGTTGATAACGGTTCAGACAGGTTTAAAGAGGAATAACAAAATGACAGACAACACTCGTTTa                  >  1:128200/1‑100 (MQ=255)
                                                                                   cccGGAAGGTGATCTTCC‑GGG‑GGCTTTTTTATTGCGCGGTTGATAACGGTTCAGACAGGTTTAAAGAGGAATAACAAAATGACAGACAACACTCGTTTAc                 >  1:4422059/1‑100 (MQ=39)
                                                                                   cccGGAAGATCACCTTCCGGGG‑GGCTTTTTTATTGCGCGGTTGATAACGGTTCAGACAGGTTTAAAGAGGAATAACAAAATGACAGACAACACTCGTTTa                  >  2:1709027/1‑100 (MQ=255)
                                                                                    ccGGAAGATCACCTTCCGGGG‑GGCTTTTTTATTGCGCGGTTGATAACGGTTCAGACAGGTTTAAAGAGGAATAACAAAATGACAGACAACACTCGTTTAc                 <  1:3480043/100‑1 (MQ=255)
                                                                                    ccGGAAGATCACCTTCCGGGG‑GGCTTTTTTATTGCGCGGTTGATAACGGTTCAGACAGGTTTAAAGAGGAATAACAAAATGACAGACAACACTCGTTTAc                 <  1:1823560/100‑1 (MQ=255)
                                                                                     cGGAAGATCACCTTCCGGGG‑GGCTTTTTTATTGCGCGGTTGATAACGGTTCAGACAGGTTTAAAGAGGAATAACAAAATGACAGACAACACTCGTTTACg                <  2:3890570/100‑1 (MQ=255)
                                                                                     cGGAAGATCACCTTCCGGGG‑GGCTTTTTTATTGCGCGGTTGATAACGGTTCAGACAGGTTTAAAGAGGAATAACAAAATGACAGACAACACTCGTTTACg                <  2:4648105/100‑1 (MQ=255)
                                                                                      ggAAGATCACCTTCCGGGG‑GGCTTTTTTATTGCGCGGTTGATAACGGTTCAGACAGGTTTAAAGAGGAATAACAAAATGACAGACAACACTCGTTTACGc               >  1:2899442/1‑100 (MQ=255)
                                                                                      ggAAGATCACCTTCCGGGG‑GGCTTTTTTATTGCGCGGTTGATAACGGTTCAGACAGGTTTAAAGAGGAATAACAAAATGACAGACAACACTCGTTTACGc               >  1:1085215/1‑100 (MQ=255)
                                                                                      ggAAGATCACCTTCCGGGG‑GGCTTTTTTATTGCGCGGTTGATAACGGTTCAGACAGGTTTAAAGAGGAATAACAAAATGACAGACAACACTCGTTTACGc               >  1:2600344/1‑100 (MQ=255)
                                                                                          naTCACCTTCCGGGG‑GGCTTTTTTATTGCGCGGTTGATAACGGTTCAGACAGGTTTAAAGAGGAATAACAAAATGACAGACAACACTCGTTTACGCATAg           >  1:1059244/2‑100 (MQ=255)
                                                                                          gATCACCTTCCGGGG‑GGCTTTTTTATTGCGCGGTTGATAACGGTTCAGACAGGTTTAAAGAGGAATAACAAAATGACAGACAACACTCGTTTACGCATAg           <  1:2624576/100‑1 (MQ=255)
                                                                                           aTCACCTTCCGGGG‑GGCTTTTTTATTGCGCGGTTGATAACGGTTCAGACAGGTTTAAAGAGGAATAACAAAATGACAGACAACACTCGTTTACGCATAGc          <  2:4578030/100‑1 (MQ=255)
                                                                                              aCCTTCCGGGG‑GGCTTTTTTATTGCGCGGTTGATAACGGTTCAGACAGGTTTAAAGAGGAATAACAAAATGACAGACAACACTCGTTTACGCATAGCTAt       >  1:4621661/1‑100 (MQ=255)
                                                                                              aCCTTCCGGGG‑GGCTTTTTTATTGCGCGGTTGATAACGGTTCAGACAGGTTTAAAGAGGAATAACAAAATGACAGACAACACTCGTTTACGCATAGCTAt       >  2:1954812/1‑100 (MQ=255)
                                                                                               ccTTCCGGGG‑GGCTTTTTTATTGCGCGGTTGATAACGGTTCAGACAGGTTTAAAGAGGAATAACAAAATGACAGACAACACTCGTTTACGCATAGCTATg      <  1:3025323/100‑1 (MQ=255)
                                                                                                     |                                                                                                  
CATCATCCTGACTAGTCTTTCAGGCGATGTGTGCTGGAAGACATTCAGATCTTCCAGTGGTGCATGAACGCATGAGAAAG‑CCCCCGGAAGATCACCTTCC‑GGG‑GGCTTTTTTATTGCGCGGTTGATAACGGTTCAGACAGGTTTAAAGAGGAATAACAAAATGACAGACAACACTCGTTTACGCATAGCTATGCAGA  >  NC_000913/2090032‑2090228

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A