Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A3 F412 I2 R1
|
70 |
105.0 |
5244496 |
94.3% |
4945559 |
100.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
2,090,136 |
(G)5→6 |
intergenic (+90/‑56) |
hisL → / → hisG |
his operon leader peptide/ATP phosphoribosyltransferase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 2,090,131 | 1 | . | G | 85.6%
| 309.4
/ 50.7
| 104 | intergenic (+85/‑61) | hisL/hisG | his operon leader peptide/ATP phosphoribosyltransferase |
| Reads supporting (aligned to +/- strand): ref base . (6/9); new base G (41/48); total (47/57) |
| Fisher's exact test for biased strand distribution p-value = 7.82e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 112 total aligned reads displayed.
CATCATCCTGACTAGTCTTTCAGGCGATGTGTGCTGGAAGACATTCAGATCTTCCAGTGGTGCATGAACGCATGAGAAAG‑CCCCCGGAAGATCACCTT‑CC‑GG‑G‑G‑G‑CTTTTTTATTGCGCGGTTGATAACGGTTCAGACAGGTTTAAAGAGGAATAACAAAATGACAGACAACACTCGTTTACGCATAGCTATGC > NC_000913/2090032‑2090225
|
catcatcCTGACTAGTCTTTCAGGCGATGTGTGCTGGAAGACATTCAGATCTTCCAGTGGTGCATGAACGCATGAGAAAG‑CCCCCGGAAGATCACCTT‑cc > 1:2539436/1‑100 (MQ=255)
atcCTGACTAGTCTTTCAGGCGATGTGTGCTGGAAGACATTCAGATCTTCCAGTGGTGCATGAACGCATGAGAAAG‑CCCCCGGAAGGTGATCTT‑CC‑gg‑g‑g < 2:2587122/100‑1 (MQ=39)
tcCTGACTAGTCTTTCCGGCGATGTGTGCTGGAAGACATTAAGATCTTCCAGTGGTGCATGAACGCATGAGAAAG‑CCCCCGGAAGATCACCTT‑CC‑ggaag < 2:1561503/100‑4 (MQ=255)
ccTGACTAGTCTTTCAGGCGATGTGTGCTGGAAGACATTCAGATCTTCCAGTGGTGCATGAACGCATGAGAAAG‑CCCCCGGAAGGTGATCTT‑CC‑GG‑G‑G‑G‑c < 1:1525339/100‑1 (MQ=38)
cTGACTAGTCTTTCAGGCGATGTGTGCTGGAAGACATTCAGATCTTCCAGTGGTGCATGAACGCATGAGAAAGCCCCCCGGAAGGTGATCTT‑CC‑GG‑G‑G‑G‑c < 1:1763234/100‑1 (MQ=38)
cTGACTAGTCTTTCAGGCGATGTGTGCTGGAAGACATTCAGATCTTCCAGTGGTGCATGAACGCATGAGAAAG‑CCCCCGGAAGATCACCTT‑CC‑gg‑g‑g‑ggc < 2:615390/100‑3 (MQ=255)
cTGACTAGTCTTTCAGGCGATGTGTGCTGGAAGACATTCAGATCTTCCAGTGGTGCATGAACGCATGAGAAAG‑CCCCCGGAAGATCACCTT‑CC‑gg‑g‑g‑ggc > 1:1130800/1‑98 (MQ=255)
cTAGTCTTTCAGGCGATGTGTGCTGGAAGACATTCAGATCTTCCAGTGGTGCATGAACGCATGAGAAAG‑CCCCCGGAAGATCACCTT‑CCGGG‑G‑G‑G‑Ctttt < 1:2463568/100‑1 (MQ=255)
tAGTCTTTCAGGCGATGTGTGCTGGAAGACATTCAGATCTTCCAGTGGTGCATGAACGCATGAGAAAGCCCCCCGGAAGGTGATCTT‑CC‑GG‑G‑G‑G‑Ctttct < 1:107040/100‑3 (MQ=37)
tAGTCTTTCAGGCGATGTGTGCTGGAAGACATTCAGATCTTCCAGTGGTGCATGAACGCATGAAAAAGCCCCCCGGAAGGTGATCTT‑CC‑GG‑G‑G‑G‑Ctttct < 2:1048865/100‑3 (MQ=25)
aGTCTTTCAGGCGATGTGTGCTGGAAGACATTCAGATCTTCCAGTGGTGCATGAACGCATGAGAAAG‑CCCCCGGAAGATCACCTT‑CCGGG‑G‑G‑G‑Ctttttt < 2:1850490/100‑1 (MQ=255)
gTCTTTCAGGCGATGTGTGCTGGAAGACATTCAGATCTTCCAGTGGTGCATGAACGCATGAGAAAG‑CCCCCGGAAGATCACCTT‑CCGGG‑G‑G‑G‑CTTTTTTa < 1:753790/100‑1 (MQ=255)
gTCTTTCAGGCGATGTCTGCTGGAAGACATTCAGATCTTCCAGTGGTGCATGAACGCATGAGAAAGCCCCCCGGAAGGTGATCTT‑CC‑GG‑G‑G‑G‑Ctttctca < 1:2176561/100‑5 (MQ=25)
tCTTTCAGGCGATGTGTGCTGGAAGACATTCAGATCTTCCAGTGGTGCAGGAACGCATGAGAAAG‑CCCCCGGAAGATCACCTT‑CCGGG‑G‑G‑G‑CTTTTTTAt < 2:1697848/100‑1 (MQ=255)
cTTTCAGGCGATGTGTGCTGAAAGACATTCAGCTCTTCCAGTGGTTGATGTACGCATGGGAAAG‑CGCCCGGGAGATCACCTT‑CC‑GGCG‑G‑G‑CTTTTTTAtt > 2:1691402/1‑100 (MQ=255)
aGGCGATGTGTGCTGGAAGACATTCAGATCTTCCAGTGGTGCATGAACGCATGAGAAAG‑CCCCCGGAAGATCACCTT‑CCGGG‑G‑G‑G‑CTTTTTTATTGcgcg > 1:2148286/1‑100 (MQ=255)
cGATGTGTGCTGGAAGACATTCAGATCTTCCAGTGGTGCATGAACGCATGAGAAAG‑CCCCCGGAAGATCACCTT‑CCGGG‑G‑G‑G‑CTTTTTTATTGCGCGGtt < 2:1031379/100‑1 (MQ=255)
gATGTGTGCTGGAAGACATTCAGATCTTCCAGTGGTGCATGAACGCATGAGAAAG‑CCCCCGGAAGATCACCTT‑CCGGG‑G‑G‑G‑CTTTTTTATTGCGCGGTTg < 2:800959/100‑1 (MQ=255)
aTGTGTGCTGGAAGACATTCAGATCTTCCAGTGGTGCATGAACGCATGAGAAAG‑CCCCCGGAAGATCACCTT‑CCGGG‑G‑G‑G‑CTTTTTTATTGCGCGGTTGa < 1:467626/100‑1 (MQ=255)
tgtgtgCTGGAAGACATTCAGATCTTCCAGTGGTGCATGAACGCATGAGAAAG‑CCCCCGGAAGATCACCTT‑CCGGG‑G‑G‑G‑CTTTTTTATTGCGCGGTTGAt > 1:2572386/1‑100 (MQ=255)
tgtgCTGGAAGACATTCAGATCTTCCAGTGGTGCATGAACGCATGAGAAAG‑CCCCCGGAAGATCACCTT‑CCGGG‑G‑G‑G‑CTTTTTTATTGCGCGGTTGATaa > 1:1390113/1‑100 (MQ=255)
gtgCTGGAAGACATTCAGATCTTCCAGTGGTGCATGAACGCATGAGAAAG‑CCCCCGGAAGATCACCTT‑CCGGG‑G‑G‑G‑CTTTTTTATTGCGCGGTTGATAAc > 1:2529696/1‑100 (MQ=255)
gtgCTGGAAGACATTCAGATCTTCCAGTGGTGCATGAACGCATGAGAAAG‑CCCCCGGAAGATCACCTT‑CCGGG‑G‑G‑G‑CTTTTTTATTGCGCGGTTGATAAc < 2:593916/100‑1 (MQ=255)
gtgCTGGAAGACATTCAGATCTTCCAGTGGTGCATGAACGCATGAGAAAG‑CCCCCGGAAGATCACCTT‑CCGGG‑G‑G‑G‑CTTTTTTATTGCGCGGTTGATAAc > 1:104104/1‑100 (MQ=255)
tgCTGGAAGACATTCAGATCTTCCAGTGGTGCATGAACGCATGAGAAAG‑CCCCCGGAAGATCACCTT‑CCGGG‑G‑G‑G‑CTTTTTTATTGCGCGGTTGATAACg > 1:1275480/1‑100 (MQ=255)
tgCTGGAAGACATTCAGATCTTCCAGTGGTGCATGAACGCATGAGAAAG‑CCCCCGGAAGATCACCTT‑CCGGG‑G‑G‑G‑CTTTTTTATTGCGCGGTTGATAACg < 1:883116/100‑1 (MQ=255)
gCTGGAAGACATTCAGATCTTCCAGTGGTGCATGAACGCATGAGAAAG‑CCCCCGGAAGATCACCTT‑CCGGG‑G‑G‑G‑CTTTTTTATTGCGCGGTTGATAACgg > 2:1723064/1‑100 (MQ=255)
gCTGGAAGACATTCAGATCTTCCAGTGGTGCATGAACGCATGAGAAAG‑CCCCCGGAAGATCACCTT‑CCGGG‑G‑G‑G‑CTTTTTTATTGCGCGGTTGATAACgg < 1:1845760/100‑1 (MQ=255)
gCTGGAAGACATTCAGATCTTCCAGTGGTGCATGAACGCATGAGAAAG‑CCCCCGGAAGATCACCTT‑CCGGG‑G‑G‑G‑CTTTTTTATTGCGCGGTTGATAACgg < 1:760939/100‑1 (MQ=255)
ggAAGACATTCAGATCTTCCAGTGGTGCATGAACGCATGAGAAAG‑CCCCCGGAAGATCACCTT‑CCGGG‑G‑G‑G‑CTTTTTTATTGCGCGGTTGATAACGGTTc > 2:1643360/1‑100 (MQ=255)
ggAAGACATTCAGATCTTCCAGTGGTGCATGAACGCATGAGAAAG‑CCCCCGGAAGATCACCTT‑CCGGG‑G‑G‑G‑CTTTTTTATTGCGCGGTTGATAACGGTTc > 2:1956685/1‑100 (MQ=255)
gAAGACATTCAGATCTTCCAGTGGTGCATGAACGCATGAGAAAG‑CCCCCGGAAGATCACCTT‑CCGGG‑G‑G‑G‑CTTTTTTATTGCGCGGTTGATAACGGTTCa < 2:1098666/100‑1 (MQ=255)
gAAGACATTCAGATCTTCCAGTGGTGCATGAACGCATGAGAAAG‑CCCCCGGAAGATCACCTT‑CCGGG‑G‑G‑G‑CTTTTTTATTGCGCGGTTGATAACGGTTCa < 2:2028022/100‑1 (MQ=255)
gACATTCAGATCTTCCGGTGGTGCATGAACGCATGAGAAAG‑CCCCCGGAAGATCACCTT‑CC‑GG‑GCG‑G‑CTTTTTTATTGCGCGGTTGATAACGGGTCAGAc > 2:515287/1‑100 (MQ=255)
cATTCAGATCTTCCAGTGGTGTATGAATGCAGGTGATAG‑CCCTCGGAAGATCACATTACG‑GG‑G‑G‑G‑CTTTTTTATTGCGCGGTTGATAACGGTTCAGACAg > 2:1232341/1‑100 (MQ=255)
cATTCAGATCTTCCAGTGGTGCATGAACGCATGAGAAAG‑CCCCCGGAAGATCACCTT‑CCGGG‑G‑G‑G‑CTTTTTTATTGCGCGGTTGATAACGGTTCAGACAg > 1:436683/1‑100 (MQ=255)
aTTCAGATCTTCCAGTGGTGCATGAACGCATGAGAAAG‑CCCCCGGAAGATCACCTT‑CCGGG‑G‑G‑G‑CTTTTTTATTGCGCGGTTGATAACGGTTCAGACAgg < 1:626232/100‑1 (MQ=255)
ttCAGATCTTCCAGTGGTGCATGAACGCATGAGAAAG‑CCCCCGGAAGATCACCTT‑CCGGG‑G‑G‑G‑CTTTTTTATTGCGCGGTTGATAACGGTTCAGACAGGt > 1:2192347/1‑100 (MQ=255)
ttCAGATCTTCCAGTGGTGCATGAACGCATGAAAAAG‑CACCCGGAAGATCACCTT‑CCGGG‑G‑G‑G‑CTTTTTTATTGCGCGGTTGATAATGGTTCAGACAGGt > 2:264878/1‑100 (MQ=255)
cAGATCTTCCAGTGGTGCATGAACGCATGAGAAAG‑CCCCCGGAAGATCACCTT‑CC‑GG‑GAG‑G‑CTGTTTTATTGCGCGGTTGATAACGGTTCAGAAAgggct > 1:2157792/1‑97 (MQ=255)
gATCTTCCAGTGGTGCATGAACGCATGAGAAAG‑CCCCCGGAAGATCACCTT‑CCGGG‑G‑G‑G‑CTTTTTTATTGCGCGGTTGATAACGGTTCAGACAGGTTTaa > 1:2081077/1‑100 (MQ=255)
gATCTTCCAGTGGTGCATGAACGCATGAGAAAG‑CCCCCGGAAGATCACCTT‑CCGGG‑G‑G‑G‑CTTTTTTATTGCGCGGTTGATAACGGTTCAGACAGGTTTaa > 1:668730/1‑100 (MQ=255)
gATCTTCCAGTGGTGCATGAACGCATGAGAAAG‑CCCCCGGAAGATCACCTT‑CCGGG‑G‑G‑G‑CTTTTTTATTGCGCGGTTGATAACGGTTCAGACAGGTTTaa > 1:265155/1‑100 (MQ=255)
tCTTCCAGTGGTGCATGAACGCATGAGAAAG‑CCCCCGGAAGATCACCTT‑CCGGG‑G‑G‑G‑CTTTTTTATTGTGCGGTTGATAACGGTTCAGACAGGTTTAAag < 1:1008984/100‑1 (MQ=255)
tCTTCCAGTGGTGCATGAACGCATGAGAAAG‑CCCCCGGAAGATCACCTT‑CCGGG‑G‑G‑G‑CTTTTTTATTGCGCGGTTGATAACGGTTCAGACAGGTTTAAag < 1:1731159/100‑1 (MQ=255)
tCTTCCAGTGGTGCATGAACGCATGAGAAAG‑CCCCCGGAAGATCACCTT‑CCGGG‑G‑G‑G‑CTTTTTTATTGCGCGGTTGATAACGGTTCAGACAGGTTTAAag < 1:1731183/100‑1 (MQ=255)
ttCCAGTGGTGCATGAACGCATGAGAAAG‑CCCCCGGAAGATCACCTT‑CCGGG‑G‑G‑G‑CTTTTTTATTGCGCGGTTGATAACGGTTCAGACAGGTTTAAagag > 1:2151678/1‑100 (MQ=255)
tCCAGTGGTGCATGAACGCATGAGAAAG‑CCCCCGGAAGATCACCTT‑CCGGG‑G‑G‑G‑CTTTTTTATTGCGCGGTTGATAACGGTTCAGACAGGTTTAAAGAgg < 1:1293313/100‑1 (MQ=255)
tCCAGTGGTGCATGAACGCATGAGAAAG‑CCCCCGGAAGATCACCTT‑CCGGG‑G‑G‑G‑CTTTTTTATTGCGCGGTTGATAACGGTTCAGACAGGTTTAAAGAgg < 1:584238/100‑1 (MQ=255)
tCCAATGGAGCATGAACGAATGAGACGT‑CACCCGAACGTTCACCTG‑CC‑GG‑GCG‑G‑CTTTTTTATTGCGCTGTTGATAACGGTTCAGTGAAGTTTAAagagt < 2:47334/100‑2 (MQ=255)
ccAGTGGTGCATGAACGCATGAGAAAG‑CCCCCGGATGATCACCTT‑CC‑GGCG‑G‑G‑CTTTTTTATTGCGCGGTTGATAACGGTTCAGACAGGTTTAAAGAGGa < 2:2557443/100‑1 (MQ=255)
ccAGTGGTGCATGAACGCATGAGAAAG‑CCCCCGGAAGATCACCTT‑CCGGG‑G‑G‑G‑CTTTTTTATTGCGCGGTTGATAACGGTTCAGACAGGTTTAAAGAGGa < 2:1091629/100‑1 (MQ=255)
ccAGTGGTGCATGAACGCATGAGAAAG‑CCCCCGGAAGATCACCTT‑CCGGG‑G‑G‑G‑CTTTTTTATTGCGCGGTTGATAACGGTTCAGACAGGTTTAAAGAGGa < 2:2380907/100‑1 (MQ=255)
ccAGTGGTGCATGAACGCATGAGAAAG‑CCCCCGGAAGATCACCTT‑CCGGG‑G‑G‑G‑CTTTTTTATTGCGCGGTTGATAACGGTTCAGACAGGTTTAAAGAGGa > 1:798338/1‑100 (MQ=255)
cAGTGGTGCATGAACGCATGAGAAAG‑CCCCCGGAAGATCACCTT‑CCGGG‑G‑G‑G‑CTTTTTTATTGCGCGGTTGATAACGGTTCAGACAGGTTTAAAGAGGaa < 1:2487333/100‑1 (MQ=255)
cAGTGGTGCATGAACGCATGAGAAAG‑CCCCCGGAAGATCACCTT‑CCGGG‑G‑G‑G‑CTTTTTTATTGCGCGGTTGATAACGGTTCAGACAGGTTTAAAGAGGaa < 1:161639/100‑1 (MQ=255)
tggtgCATGAACGCATGAGAAAG‑CCCCCGGAAGATCACCTT‑CCGGG‑G‑G‑G‑CTTTTTTATTGCGCGGTTGATAACGGTTCAGACAGGTTTAAAGAGGAATaa < 1:1949244/100‑1 (MQ=255)
ggtgCATGAACGCATGAGAAAG‑CCCCCGGAAGATCACCTT‑CCGGG‑G‑G‑G‑CTTTTTTATTGCGCGGTTGATAACGGTTCAGACAGGTTTAAAGAGGAATAAc > 1:494972/1‑100 (MQ=255)
gtgCATGAACGCATGAGAAAG‑CCCCCGGAAGATCACCTT‑CCGGG‑G‑G‑G‑CTTTTTTATTGCGCGGTTGATAACGGTTCAGACAGGTTTAAAGAGGAATAACa < 2:817302/100‑1 (MQ=255)
gtgCATGAACGCATGAGAAAG‑CCCCCGGAAGATCACCTT‑CCGGG‑G‑G‑G‑CTTTTTTATTGCGCGGTTGATAACGGTTCAGACAGGTTTAAAGAGGAATAACa < 1:1822594/100‑1 (MQ=255)
gtgCATGAACGCATGAGAAAG‑CCCCCGGAAGATCACCTT‑CCGGG‑G‑G‑G‑CTTTTTTACTGCGCGGTTGATAACGGTTCAGACAGTTTTAAAGAGAAATAACa > 1:2427145/1‑100 (MQ=255)
gtgCATGAACGCATGAGAAAG‑CCCCCGGAAGATAACCTT‑CCGGG‑G‑G‑G‑CTTTTTTATTGCGCGGTTGATAACGGTTCAGACAGGTTTAAAGAGGAATAACa < 2:817405/100‑1 (MQ=255)
tgCATGAACGCATGAGAAAG‑CCCCCGGAAGATCACCTT‑CCGGG‑G‑G‑G‑CTTTTTTATTGCGCGGTTGGTAACGGTTCAGACAGGTTTAAAGAGGAATAACaa > 2:335561/1‑100 (MQ=255)
aTGAACGCATGATAAAG‑CCCCCGGAAGATCACCTT‑CCGGG‑G‑G‑G‑CTTTTTTATTGCGCGGTTGATAACGGTTCAGACAGGTTTAAAGAGGAATAACAAAAt < 2:1672799/100‑1 (MQ=255)
gAACGCATGAGAAAG‑CCCCCGGAAGATCACCTT‑CCGGG‑G‑G‑G‑CTTTTTTATTGCGCGGTTGATAACGGTTCCGACAGGTTTAAAGTGGAATAACAAAATga > 2:193626/1‑100 (MQ=255)
gAACGCATGAGAAAG‑CCCCCGGAAGATCACCTT‑CC‑GG‑G‑G‑GTCTTTTTTATTGCGCGGTTGATAACGGTTCAGACAGGTTTAAAGAGGAATAACAAAATga < 1:1695557/100‑1 (MQ=255)
aaCGCATGAGAAAG‑CCCCCGGAAGATCACCTT‑CCGGG‑G‑G‑G‑CTTTTTTATTGCGCGGTTGATAACGGTTCAGACAGGTTTAAAGAGGAATAACAAAATgac < 1:2381380/100‑1 (MQ=255)
aaCGCATGAGAAAG‑CCCCCGGAAGATCACCTT‑CCGGG‑G‑G‑G‑CTTTTTTATTGCGCGGTTGATAACGGTTCAGACAGGTTTAAAGAGGAATAACAAAATgac < 2:1351473/100‑1 (MQ=255)
cGCATGAGAAAG‑CCCCCGGAAGATCACCTT‑CCGGG‑G‑G‑G‑CTTTTTTATTGCGCGGTTGATAACGGTTCAGACAGGTTTAAAGAGGAATAACAAAATgacag < 1:1666084/100‑1 (MQ=255)
cATGAGAAAG‑CCCCCGGAAGATCACCTT‑CCGGG‑G‑G‑G‑CTTTTTTATTGCGCGGTTGATAACGGTTCAGACAGGTTTAAAGAGGAATAACAAAATgacagac > 2:1657289/1‑100 (MQ=255)
cATGAGAAAG‑CCCCCGGAAGATCACCTT‑CCGGG‑G‑G‑G‑CTTTTTTATTGCGCGGTTGATAACGGTTCAGACAGGTTTAAAGAGGAATAACAAAATgacagac > 1:285351/1‑100 (MQ=255)
cATAAGAAAG‑CCCCCGGAAGATCACCTT‑CCGGG‑G‑G‑G‑CTTTTTTATTGCGCGGTTGATAACGGTTCAGACAGGTTTAAAGAGGAATAACAAAATgacagac > 1:2036214/1‑100 (MQ=255)
aTGAGAAAG‑CCCCCGGAAGATCACCTT‑CCGGG‑G‑G‑G‑CTTTTTTATTGCGCGGTTGATAACGGTTCAGACAGGTTTAAAGAGGAATAACAAAATgacagaca < 1:1123516/100‑1 (MQ=255)
aTGAGAAAG‑CCCCCGGAAGATCACCTT‑CCGGG‑G‑G‑G‑CTTTTTTATTGCGCGGTTGATAACGGTTCAGACAGGTTTAAAGAGGAATAACAAAATgacagaca < 2:357493/100‑1 (MQ=255)
aTGAGAAAG‑CCCCCGGAAGATCACCTT‑CCGGG‑G‑G‑G‑CGTTTTTATTGCGCGGTTGATAACGGGTCAGACAGGTTTAAAGAGGAATAACAAAATgacagaca > 2:314772/1‑100 (MQ=255)
tGAGAAAG‑CCCCCGGAAGATCACCTT‑CCGGG‑G‑G‑G‑CTTTTTTATTGCGCGGTTGATAACGGTTCAGACAGGTTTAAAGAGGAATAACAAAATGACAGacaa < 1:67408/100‑1 (MQ=255)
gagaAAG‑CCCCCGGAAGATCACCTT‑CCGGG‑G‑G‑G‑CTTTTTTATTGCGCGGTTGATAACGGTTCAGACAGGTTTAAAGAGGAATAACAAAATGACAGacaac < 1:1681844/100‑1 (MQ=255)
agaAAG‑CCCCCGGAAGATCACCTT‑CCGGG‑G‑G‑G‑CTTTTTTATTGCGCGGTTGATAACGGTTCAGACAGGTTTAAAGAGGAATAACAAAATGACAGacaaca > 2:1818703/1‑100 (MQ=255)
naaG‑CCCCCGGAAGATCACCTT‑CCGGG‑G‑G‑G‑CTTTTTTATTGCGCGGTTGATAACGGTTCAGACAGGTTTAAAGAGGAATAACAAAATGACAGACAACACt > 1:1118301/2‑100 (MQ=255)
aaaG‑CCCCCGGAAGATCACCTT‑CCGGG‑G‑G‑G‑CTTTTTTATTGCGCGGTTGATAACGGTTCAGACAGGTTTAAAGAGGAATAACAAAATGACAGACAACACt < 1:309119/100‑1 (MQ=255)
agccccccGGAAGGTGATCTT‑CC‑GG‑G‑G‑G‑CTTTTTTATTGCGCGGTTGATAACGGTTCAGACAGGTTTAAAGAGGAATAACAAAATGACAGACAACACTCg > 1:2484327/4‑100 (MQ=38)
g‑CCCCCGGAAGATCACCTT‑CCGGG‑G‑G‑G‑CTTTTTTATTGCGCGGTTGATAACGGTTCAGGCAGGTATAAAGAGGAATAACAAAAGTACAGACAACACTCGt > 2:1559493/1‑100 (MQ=255)
cccccGGAAGATCACCTT‑CCGGG‑G‑G‑G‑CTTTTTTATTGCGCGGTTGATAACGGTTCAGACAGGTTTAAAGAGGAATAACAAAATGACAGACAACACTCGtt > 1:1029635/1‑100 (MQ=255)
cacccGGAAGATCACCTT‑CCGGG‑G‑G‑G‑CTTTTTTATTGCGCGGTTGATAACGGTTCAGACAGGTTTAAAGAGGAATAACAAAATGACAGACAACACTCGtt < 1:457578/98‑1 (MQ=255)
cccGGAAGATCACCTT‑CCGGG‑G‑G‑G‑CTTTTTTATTGCGCGGTTGATAACGGTTCAGACAGGTTTAAAGAGGAATAACAAAATGACAGACAACACTCGTTTa < 1:1531564/100‑1 (MQ=255)
ccGGAAGATCACCTT‑CCGGG‑G‑G‑G‑CTTTTTTATTGCGCGGTTGATAACGGTTCAGACAGGTTTAAAGAGGAATAACAAAATGACAGACAACACTCGTTTAc > 2:2100536/1‑100 (MQ=255)
ccGGAAGATCACCTT‑CCGGG‑G‑G‑G‑CTTTTCTATTGCGCGGTTGATCACTGTTCAGACAGGCTTCAAGAGGCATATCAAAATCACAGACAACACTCTTTTAc > 2:2100130/1‑100 (MQ=255)
cGGAAGATCACCTT‑CCGGG‑G‑G‑G‑CTTTTTTATTGCGCGGTTGATAACGGTTCAGACAGGTTTAAAGAGGAATAACAAAATGACAGACAACACTCGTTTACg < 1:1205951/100‑1 (MQ=255)
ggAAGATCACCTT‑CCGGG‑G‑G‑G‑CTTTTTTATTGCGCGGTTGATAACGGTTCAGACAGGTTTAAAGAGGAATAACAAAATGACAGACAACACTCGTTTACGc < 1:1577146/100‑1 (MQ=255)
gAAGATCACCTT‑CCGGG‑G‑G‑G‑CTTTTTTATTGCGCGGTTGATAACGGTTCAGACAGGTTTAAAGAGGAATAACAAAATGACAGACAACACTCGTTTACGCa > 2:257764/1‑100 (MQ=255)
gAAGATCACCTT‑CC‑GG‑G‑GCG‑CTTTATTATTGCGCGGTTGACAACGGTTCAGACAGGTTTAAAGAGGAATAACAAAATGACAGACAACACTCGTTTACGCa < 1:864257/100‑1 (MQ=255)
aGATCACCTT‑CCGGG‑G‑G‑G‑CTTTTTTATTGCGCGGTTGATAACGGTTCAGACAGGTTTAAAGAGGAATAACAAAATGACAGACAACACTCGTTTACGCATa < 1:1004467/100‑1 (MQ=255)
aGATCACCTT‑CCGGG‑G‑G‑G‑CTTTTTTATTGCGCGGTTGATAACGGTTCAGACAGGTTTAAAGAGGAATAACAAAATGACAGACAACACTCGTTTACGCATa < 2:2277742/100‑1 (MQ=255)
aTCACCTT‑CCGGG‑G‑G‑G‑CTTTTTTATTGCGCGGTTGATAACGGTTCAGACAGGTTTAAAGAGGAATAACAAAATGACAGACAACACTCGTTTACGCATAGc > 2:138140/1‑100 (MQ=255)
aTCACCTT‑CCGGG‑G‑G‑G‑CTTTTTTATTGCGCGGTTGATAACGGTTCAGACAGGTTTAAAGAGGAATAACAAAATGACAGACAACACTCGTTTACGCATAGc > 1:767767/1‑100 (MQ=255)
aTCACCTT‑CCGGG‑G‑G‑G‑CTTGTTTATTGCGCGGTTGATATCGGGTCAGACGGGTTTAAAGCCGAATAACAACATTACGGACAACTCTCGTTTACGCATAGc < 2:561553/100‑1 (MQ=255)
aCCTT‑CCGGG‑G‑G‑G‑CTTTTTTATTGCGCGGTTGATAACGGTTCAGACAGGTTTAAAGAGGAATAACAAAATGACAGACAACACTCGTTTACGCATAGCTAt < 1:1426280/100‑1 (MQ=255)
ccTT‑CCGGG‑G‑G‑G‑CTTTTTTATTGCGCGGTTGATAACGGTTCAGACAGGTTTAAAGAGGAATACCAAAATGACAGACAACACTCGTTTACGCATAGCTATg < 2:2536792/100‑1 (MQ=255)
ccTT‑CCGGG‑G‑G‑G‑CTTTTTTATTGCGCGGTTGATAACGGTTCAGACAGGTTTAAAGAGGAATAACAAAATGACAGACAACACTCGTTTACGCATAGCTATg < 1:1289545/100‑1 (MQ=255)
cTT‑CCGGG‑G‑G‑G‑CTTTTTTATTGCGCGGTTGATAACGGTTCAGACAGGTTTAAAGAGGAATAACAAAATGACAGACAACACTCGTTTACGCATAGCTATGc > 2:1393600/1‑100 (MQ=255)
|
CATCATCCTGACTAGTCTTTCAGGCGATGTGTGCTGGAAGACATTCAGATCTTCCAGTGGTGCATGAACGCATGAGAAAG‑CCCCCGGAAGATCACCTT‑CC‑GG‑G‑G‑G‑CTTTTTTATTGCGCGGTTGATAACGGTTCAGACAGGTTTAAAGAGGAATAACAAAATGACAGACAACACTCGTTTACGCATAGCTATGC > NC_000913/2090032‑2090225
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
