Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A11 F1 I0 R1 31 171.4 3130718 96.2% 3011750 262.1

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_000913 3,528,108 T→G 46.2% L547R (CTG→CGG)  yrfF → putative RcsCDB‑response attenuator, inner membrane protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,528,1080TG46.2% 5.2 / 277.0 172L547R (CTG→CGG) yrfFputative RcsCDB‑response attenuator, inner membrane protein
Reads supporting (aligned to +/- strand):  ref base T (42/51);  new base G (37/42);  total (79/93)
Fisher's exact test for biased strand distribution p-value = 8.79e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 4.88e-01

Only 100 of 173 total aligned reads displayed.

GAAGCAGTTAATCGCCAGCTGCACCCTAAACCGGAAGATGAATCTCGCGTCAGTGCCTCATTACGTTCAGCAATTCAAAAATCCGGCATGGTATTGCTTGATGATTTTGGCGACATTGTACTGAAGACAGCGGATTTATGTTCTGCCAAAGATGACTGTGTGCGACTGAAAAATGCGCTGGTCAATCTCGGCAACAGTAAAGACTGGGACGCGCTGGTAAAACGCGCCAACGCCGGGAAGCTCGATGGCGTGAATGTGTTATTACGCCCGGTGAGTGCGGAATCGCTGGATAACCTGGTGGCAACCTCCACCGCGCCGTTTATCACGCATGAAACGGCGCGAGCGGCACAATCACTAAACAGTCCGGCCCCCGGCGGATTCCTGATTGTCAGCGACGAAGGCAGCGATTTTGTTGATCAGCCCTGGCCTTCGGCATCACTTTACGACTACCCGCCGCAAGAACAGTGGAACGCTTTCCAGAAACTGGCACAAATGCTGATGCATACGCCGTTTAACGCCGAGGGTATCGTCACAAAAATCTTCACTGACGCCAATGGTACGCAGCATAT  >  NC_000913/3527822‑3528390
                                                                                                                                                                                                                                                                                              |                                                                                                                                                                                                                                                                                          
gAAGCAGTTAATCGCCAGCTGCACCCTAAACCGGAAGATGAATCTCGCGTCAGTGCCTCATTACGTTCAGCAATTCAAAAATCCGGCATGGTATTGCTTGATGATTTTGGCGACATTGTACTGAAGACAGCGGATTTATGTTCTGCCAAAGATGACTGTGTGCGACTGAAAAATGCGCTGGTCAATCTCGGCAACAGTAAAGACTGGGACGCGCTGGTAAAACGCGCCAACGCCGGGAAGCTCGATGGCGTGAATGTGTTATTACGCCCGGTGAGTGCGGAATCGCggg                                                                                                                                                                                                                                                                                          <  1:40824/289‑1 (MQ=255)
       ttAATCGCCAGCTGCACCCTAAACCGGAAGATGAATCTCGCGTCAGTGCCTCATTACGTTCAGCAATTCAAAAATCCGGCATGGTATTGCTTGATGATTTTGGCGACATTGTACTGAAGACAGCGGATTTATGTTCTGCCAAAGATGACTGTGTGCGACTGAAAAATGCGCTGGTCAATCTCGGCAACAGTAAAGACTGGGACGCGCTGGTAAAACGCGCCAACGCCGGGAAGCTCGATGGCGTGAATGTGTTATTACGCCCGGTGAGTGCGGAATCGCTGGATaa                                                                                                                                                                                                                                                                                      >  1:888986/1‑286 (MQ=255)
        tAATCGCCAGCTGCACCCTAAACCGGAAGATGAATCTCGCGTCAGTGCCTCATTACGTTCAGCAATTCAAAAATCCGGCATGGTATTGCTTGATGATTTTGGCGACATTGTACTGAAGACAGCGGATTTATGTTCTGCCAAAGATGACTGTGTGCGACTGAAAAATGCGCTGGTCAATCTCGGCAACAGTAAAGACTGGGACGCGCTGGTAAAACGCGCCAACGCCGGGAAGCTCGATGGCGTGAATGTGTTATTACGCCCGGTGAGTGCGGAATCGCTGGATAAcc                                                                                                                                                                                                                                                                                    <  1:872808/287‑1 (MQ=255)
           tCGCCAGCTTCACCCTAAACCGCAAGATGAATCTCGCGTCAGGGCGTCATTACGTTCAGAAATTCAAAAATCCGGCATGGTATTGCTTGATGATTTTGGCGACATTGTACTGAAGACAGCGGATTTATGTTCTGCCAAAGATGACTGTGTGCGACTGAAAAATGCGCTGGTCAATCTCGGCAACAGTAAAGACTGGGACGCGCTGGTAAAACGCGCCAACGCCGGGAAGCTCGATGGCGTGAATGTGTTATTACGCCCGGTGAGTGCGGAATCGCGGGATAACCtggtg                                                                                                                                                                                                                                                                               <  2:2730/289‑1 (MQ=255)
            cccccacTGCACCCTGAACCGGAAAATGAATCTCGCGTCAGTGCCTCATTACGTTCAGCAATTCAAAAATCCGGCATGGTATTGCTTGATGATTTTGTCGAAAGTGTACTGAAGACAGCGGATTTATGTTCTGCCAAAGATGACTGTGTGCGACTGAAAAATGCGCTGGTCAATCTCGGCAACAGTAAAGACTGGGACGCGCTGGTAAAACGCGCCAACGCCGGGAAGCTCGATGGCGTGAATGTGTTATTACGCCCGGTGAGTGCGGAATCGCTGGATAACCtggtgg                                                                                                                                                                                                                                                                              <  2:3617/283‑1 (MQ=255)
                        ccTAAACCGGAAAAGGAATCTGTCTTCAGTACCTCATTACTGTCATCAATTCAAAAATCCGGCATGGTATTGCTTGAGGATTTTGGCGACATTGTACTGAAGACAGCGTATTTATGTTCTGCCAAAGATGACTGTGTGCGACTGAAAAATGCGCTGGTCAATCTCGGCAACAGTAAAGACTGGGACGCGCTGGTAAAACGCGCCAACGCCGGGAAGCTCGATGGCGTGAATGTGTTATTACGCCCGGTGAGTGCGGAATCGCGGGATAACCTGGTGGCAACCTCCACcg                                                                                                                                                                                                                                                                  <  2:949113/289‑1 (MQ=255)
                          tAAACCGGAAGATGAATTTCGGTGCATGTCCTCATTACGTTCAGCAATTCAAAAATCCGGCATGGTATTGCTTGATGATTTTGGCGACATTGTACTGAAGACAGCGGATTTATGTTCTGCCAAAGATGACTGTGTGCGACTGAAAAATGCGCTGGTCAATCTCGGCAACAGTAAAGACTGGGACGCGCTGGTAAAACGCGCCAACGCCGGGAAGCTCGATGGCGTGAATGTGTTATTACGCCCGGTGAGTGCGGAATCGCGGGATAACCTGGTGGCAACCTCCACcgcg                                                                                                                                                                                                                                                                <  2:1410777/289‑1 (MQ=255)
                           aacccGAAAGAAGAATCTCCCGACAGTGCCTAATTACGTTCAGCAATTCAAAAATCCGGCATGGTATTGCTTGATGATTTTGGCGACATTGTACTGAAGACAGCGGATTTATGTTCTGCCAAAGATGACTTTGTGCGACTGAAAAATGCGCTGGTCAATCTCGGCAACAGTAAAGACGGGGACGCGCTGGTAAAACGCGCCAACGCCGGGAAGCTCGATGGCGTGAATGTGTTATTACGCCCGGTGAGTGCGGAATCGCGGGATAACCTGGTGGCAACCTCCACCgcgc                                                                                                                                                                                                                                                               <  2:1404380/286‑1 (MQ=255)
                           aaaCCGTAAGATGAATCTCGCGTCAGTGCCTCATTACGTTCAGCAATTCAAAAATCCTGCATGGTATTGCTTGATGATTTTGGGGACATTGTACTGAAGACAGCGGATTTATGTTCTGCCAAAGATGACTGTGTGCGACTGAAAAATGCGCTGGTCAATCTCGGCAACAGTAAAGACTGGGACGCGCTGGTAAAACGAGCCAACGCCGGGAAGCTCGATGGCGTGAATGTGTTATTACGCCCGGTGAGTGCGGAATCGCTGGATAACCTGGTGGCAACCTCCACCgcgc                                                                                                                                                                                                                                                               <  1:1275551/289‑1 (MQ=255)
                              ccGGAAGGTGAGTCGCGCTTCGATGCCTCATTACGTTCAGCAATTCGAAAGTCCGGCATGGTATTGCTGGATGATGTTGGCGACATTGTACTGAAGACAGCGGATTTATGTTCTGCCAAAGATGACTGTGGGCGACTGAAAAAGGCGCTGGTCAATCTCGGCAACAGTAAAGACTGGGACGCGCGGGTAAAACGCGCCAACGCCGGGAAGCTCGATGGCGTGAATGTGTTATTACGCCCGGTGAGTGCGGAATCGCGGGATAACCTGGTGGCAACCTCCCCCGCGCCGt                                                                                                                                                                                                                                                            <  2:872552/289‑1 (MQ=255)
                                  aaGATGAATCTCGCGTCAGTGCCTCATTACGTTCAGCAATTCAAAAATCCGGCATGGTATTGCTTGATGATTTTGGCGACATTGTACTGAAGACAGCGGATTTATGTTCTGCCAAAGATGACTGTGTGCGACTGAAAAATGCGCTGGTCAATCTCGGCAACAGTAAAGACTGGGACGCGCTGGTAAAACGCGCCAACGCCGGGAAGCTCGATGGCGTGAATGTGTTATTACGCCCGGTGAGTGCGGAATCGCGGGATAACCTGGTGGCAACCTCCACCGCGCCGTTTa                                                                                                                                                                                                                                                         >  1:1094127/1‑288 (MQ=255)
                                  aaGATGAATCTCGCGTCAGTGCCTCATTACGTTCAGCAATTCAAAAATCCGGCATGGTATTGCTTGATGATTTTGGCGACATTGTACTGAAGACAGCGGATTTATGTTCTGCCAAAGATGACTGTGTGCGACTGAAAAATGCGCTGGTCAATCTCGGCAACAGTAAAGACTGGGACGCGCTGGTAAAACGCGCCAACGCCGGGAAGCCCGATGGCGTGAATGTGTTATTACGCCCGGTGAGTGCGGAATCGCGGGATAACCTGGTGGCAACCTCCACCGCGCCGTTTa                                                                                                                                                                                                                                                         >  2:597294/1‑288 (MQ=255)
                                    gATGAATCTCGCGTCAGTGCCTCATTACGTTCAGCAATTCAAAAATCCGGCATGGTATTGCTTGATGATTTTGGCGACATTGTACTGAAGACAGCGGATTTATGTTCTGCCAAAGATGACTGTGTGCGACTGAAAAATGCGCTGGTCAATCTCGGCAACAGTAAAGACTGGGACGCGCTGGTAAAACGCGCCAACGCCGGGAAGCTCGATGGCGTGAATGTGTTATTACGCCCGGTGAGTGCGGAATCGCTGGa                                                                                                                                                                                                                                                                                         <  2:1224974/254‑1 (MQ=255)
                                    gATGAATCTCGCGTCAGTGCCTCATTACGTTCAGCAATTCAAAAATCCGGCATGGTATTGCTTGATGATTTTGGCGACATTGTACTGAAGACAGCGGATTTATGTTCTGCCAAAGATGACTGTGTGCGACTGAAAAATGCGCTGGTCAATCTCGGCAACAGTAAAGACTGGGACGCGCTGGTAAAACGCGCCAACGCCGGGAAGCTCGATGGCGTGAATGTGTTATTACGCCCGGTGAGTGCGGAATCGCTGGa                                                                                                                                                                                                                                                                                         >  1:1224974/1‑254 (MQ=255)
                                      tGAATCTCGCGTCAGTGCCTCATTACGTTCAGCAATTCAAAAATCCGGCATGGTATTGCTTGATGATTTTGGCGACATTGTACTGAAGACAGCGGATTTATGTTCTGCCAAAGATGACTGTGTGCGACTGAACAATGCGCTGGTCAATCTCGGCAACAGTAAAGACTGGGACGCGCTGGTAAAACGCGCCAACGCCGGGAAGCTCGATGGCGTGAATGTGTTATTACGCCCGGTGAGTGCGGAATCGCGGGATAACCTGGTGGCAACCTCCCCCGCGCCggtaaacac                                                                                                                                                                                                                                                     >  2:755992/1‑280 (MQ=255)
                                         aTCTCGCGTCAGTGCCTCATTACGTTCAGCAATTCAAAAATCCGGCATGGTATTGCTTGATGATTTTGGCGACATTGTACTGAAGACAGCGGATTTATGTTCTGCCAAAGATGACTGTGTGCGACTGACAAATGCGCTGGTCAATCTCGGCAACCGTAAAGACTGGTACGCGCTGGTAAAACGCGCCAACGCCGGGAAGCTCGATGGCGTGAATGTGTTATTACGCCCGGTGAGTGCGGAATCGCGGGATAACCTGGTGGCAACCTCCACCGCTCTGTTTactgcgtga                                                                                                                                                                                                                                                 >  2:1358786/1‑281 (MQ=255)
                                               cgTCAGTGCCTCATTACGTTCAGCAATTCAAAAATCCGGCATGGTATTGCTTGATGATTTTGGCGACATTGTACTGAAGACAGCGGATTTATGTTCTGCCAAAGATGACTGTGTGCGACTGAAAAATGCGCTGGTCAATCTCGGCAACAGTAAAGACTGGGACGCGCTGGTAAAACGCGCCAACGCCGGGAAGCTCGATGGCGTGAATGTGTTATTACGCCCGGTGAGTGCGGAATCGCTGGATAACCTGGTGGCAACCTCCACCGCGCCGTTTATCACGCATGAAACg                                                                                                                                                                                                                                           >  1:615428/1‑289 (MQ=255)
                                                   aGTGCCTCATTACGTTCAGCAATTCAAAAATCCGGCATGGTATTGCTTGATGATTTTGGCGACATTGTACTGAAGACAGCGGATTTATGTTCTGCCAAAGATGACTGTGTGCGACTGAAAAATGCGCTGGTCAATCTCGGCAACAGTAAAGACTGGGACGCGCTGGTAAAACGCGCCAACGCCGGGAAGCTCGATGGCGTGAATGTGTTATTACGCCCGGTGAGTGCGGAATCGCTGGATAACCTGGTGGCAACCTCCACCGCGCCGTTTATCACGCATGAAACGgcgc                                                                                                                                                                                                                                       >  1:1158390/1‑289 (MQ=255)
                                                    gTGCCTCATTACGTTCAGCAATTCAAAAATCCGGCATGGTATTGCTTGATGATTTTGGCGACATTGTACTGAAGACAGCGGATTTATGTTCTGCCAAAGATGACTGTGTGCGACTGAAAAATGCGCTGGTCAATCTCGGCAACAGTAAAGACTGGGACGCGCTGGTAAAACGCGCCAACGCCGGGAAGCTCGATGGCGTGAATGTGTTATTACGCCCGGTGAGTGCGGAATCGCTGGATAACCTGGTGGCAACCTCCACCGCGCCGTTTATCACGCATGAAACGGcgcg                                                                                                                                                                                                                                      >  2:163708/1‑289 (MQ=255)
                                                      gCCTCATTACGTTCAGCAATTCAAAAATCCGGCATGGTATTCCTTGATGATTTTGGCGACATTGTACGGAAGACAGCGGATTTATGTTCTGCCAAAGATGACTGTGTGCGACTGAAAAATGCGCTGGTCAATCTCGGCAACAGTAAAGACTGGGACGCGCTGGTAAAACGCGCCAACGCCGGGAAGCTCGATGGCGTGAATGTGTTATTACGCCCGGTGAGTGCGGAATCGCTGGATAACCTGGTGGCAACCTCCACCGCGCCGTTTATCACGCATGAAACGGCGCGAg                                                                                                                                                                                                                                    <  1:840961/289‑1 (MQ=255)
                                                          cATTACGTTCAGCAATTCAAAAATCCGGCATGGTATTGCTTGATGATTTTGGCGACATTGTACTGAAGACAGCGGATTTATGTTCTGCCAAAGATGACTGTGTGCGACTGAAAAATGCGCTGGTCAATCTCGGCAACAGTAAAGACTGGGACGCGCTGGTAAAACGCGCCAACGCCGGGAAGCTCGATGGCGTGAATGTGTTATTACGCCCGGTGAGTGCGGAATCGCTGGATAACCTGGTGGCAACCTCCACCGCGCCGTTTATCACGCATGAAACGGCGCGAGCgg                                                                                                                                                                                                                                 >  1:423870/1‑288 (MQ=255)
                                                            ttACGTTTAGCAATTCAAAATGCCGGCATGGTATTGCTTGATGATTTTGGCTACATTGTACTGAAGACAGCGGATTTATGTTCTGCCAAAGATGACTGTGTGCGACTGAAAAATGCGCTGGTCAATCTCGGCAACAGTAAAGACTGGGACGCGCTGGTAAAACGCGCCAACGCCGGGAAGCTCGATGGCGTGAATGTGTTATTACGCCCGGTGAGTGCGGAATCGCTGGATAACCTGGTGGCAACCTCCACCGCGCCGTTTATCACGCATGAAACGGCGCGAGCGGcac                                                                                                                                                                                                                              <  1:1386645/289‑1 (MQ=255)
                                                            ttACGTTCAGCAATTCAAAAATCCGGCATGGTATTGCTTGATGATTTTGGCGACATTGTACTGAAGACAGCGGATTTATGTTCTGCCAAAGATGACTGTGTGCGACTGAAAAATGCGCTGGTCAATCTCGGCAACAGTAAAGACTGGGACGCGCTGGTAAAACGCGCCAACGCCGGGAAGCTCGATGGCGTGAATGTGTTATTACGCCCGGTGAGTGCGGAATCGCTGGATAACCTGGTGGCAACCTCCACCGCGCCGTTTATCACGCATGAAACGGCGCGAGCGGcac                                                                                                                                                                                                                              <  1:1556147/289‑1 (MQ=255)
                                                            ttACGTTCAGCAATTCAAAAATCCGGCATGGTATTGCTTGATGATTTTGGCGACATTGTACTGAAGACAGCGGATTTATGTTCTGCCAAAGATGACTGTGTGCGACTGAAAAATGCGCTGGTCAATCTCGGCAACAGTAAAGACTGGGACGCGCTGGTAAAACGCGCCAACGCCGGGAAGCTCGATGGCGTGAATGTGTTATTACGCCCGGTGAGTGCGGAATCGCTGGATAACCTGGTGGCAACCTCCACCGCGCCGTTTATCACGCATGAAACGGCGCGAGCGGcac                                                                                                                                                                                                                              <  1:1365796/289‑1 (MQ=255)
                                                            ttACGTTCAGCAATTCAAAAATCCGGCATGGTATTGCTTGATGATTTTGGCGACATTGTACTGAAGACAGCGGATTTATGTTCTGCCAAAGATGACTGTGTGCGACTGAAAAATGCGCTGGTCAATCTCGGCAACAGTAAAGACTGGGACGCGCTGGTAAAACGCGCCAACGCCGGGAAGCTCGATGGCGTGAATGTGTTATTACGCCCGGTGAGTGCGGAATCGCTGGATAACCTGGTGGCAACCTCCACCGCGCCGTTTATCACGCATGAAACGGCGCGAGCGGcac                                                                                                                                                                                                                              <  2:1158390/289‑1 (MQ=255)
                                                            ttACGTTCAGCAATTCAAAAATCCGGCATGGTATTGCTTGAGGATTTTGGCGACATTGTACTGAAGACAGCGGATTTATGTTCTGCCAAAGATGACTGTGTGCGACTGAAAAATGCGCTGGTCAATCTCGGCAACAGTAAAGACTGGGACGCGCTGGTAAAACGCGCCAACGCCGGGAAGCTCGATGGCGTGAATGTGTTATTACGCCCGGTGAGTGCGGAATCGCGGGATAACCTGGTGGCAACCTCCACCGCGCCGTTTCATGCGTGATAAACGGCGCGAGCGGcac                                                                                                                                                                                                                              <  1:1358786/289‑1 (MQ=255)
                                                            ttACGTTCAGCAATTCAAAAAGCCGGCTTGGTATTGCTTGATGATTTTGGCGAAATTGTACTGAAGACAGCGGATTTATGTTCTGCCAAAGATGACTGTGTGCGACTGAAAAATGCGCTGGTCAATCTCGGCAACAGTAAAGACTGGGACGCGCTGGTAAAACGCGCCAACGCCGGGAAGCTCGATGGCGTGAATGTGTTATTACGCCCGGTGAGTGCGGAATCGCTGGATAACCTGGTGGCAACCTCCACCGCGCCGTTTATCACGCATGAAACGGCGCGAGCGGcac                                                                                                                                                                                                                              <  2:761691/289‑1 (MQ=255)
                                                            ttACGTTAAGAAATTCAAAAATCCGGCATGTGATTGCTTGATGATTTTGGCGACATTGTACTGAAGAAAGCGGATTTATGTTCTGCCAAAGATGACTGTGTGCGACTGAAAAATGCGCTGGTCAATCTCGGCAACAGTAAAGACTGGGACGCGCTGGTAAAACGCGCCAACGCCGGGAAGCTCGATGGCGTGAATGTGTTATTACGCCCGGTGAGTGCGGAATCGCGGGATAACCTGGTGGCAACCTCCACCGCGCCGTTTATCACGCATGAAACGGCGCGAGCGGcac                                                                                                                                                                                                                              <  2:1391587/289‑1 (MQ=255)
                                                                 ttCAGCAATTCAAAAATCCGGCATGGTATTGCTTGATGATTTTGGCGACATTGTACTGAAGACAGCGGATTTATGTTCTGCCAAAGATGACTGTGTGCGACTGAAAAATGCGCTGGTCAATCTCGGCAACAGTAAAGACTGGGACGCGCTGGTAAAACGCGCCAACGCCGGGAAGCTCGATGGCGTGAATGTGTTATTACGCCCGGTGAGTGCGGAATCGCGGGATAACCTGGTGGCAACCTCCACCGCGCCGTTTATCACGCATGAAACGGCGCGAGCGGCACAATc                                                                                                                                                                                                                          >  1:263283/1‑288 (MQ=255)
                                                                     gCAATTCAAAAATCCGGCATGGTATTGCTTGATGATTTTGGCGACATTGTACTGAAGACAGCGGATTTATGTTCTGCCAAAGATGACTGTGTGCGACTGAAAAATGCGCTGGTCAATCTCGGCAACAGTAAAGACTGGGACGCGCTGGTAAAACGCGCCAACGCCGGGAAGCTCGATGGCGTGAATGTGTTATTACGCCCGGTGAGTGCGGAATCGCTGGATAACCTGGTGGCAACCTCCACCGCGCCGTTTATCACGCATGAAACGGCGCGAGCGGCACAATCACTaa                                                                                                                                                                                                                     >  1:743126/1‑289 (MQ=255)
                                                                     gCAATTCAAAAATCCGGCATGGTATTGCTTGATGATTTTGGCGACATTGTACTGAAGACAGCGGATTTATGTTCTGCCAAAGATGACTGTGTGCGACTGAAAAATGCGCTGGTCAATCTCGGCAACAATAAAGACTGGGACGCGCTGGTAAAACGCGCCAACGCCGGGAAGCTCGATGGCGTGAATGTGTTATTACGCCCGGTGAGTGCGGAATCGCGGGATAACCTGGTGGCAACCTCCACCGCGCCGTTTATCACGCATGAAACGGCGCGAGCgg                                                                                                                                                                                                                                 <  2:1083335/277‑1 (MQ=255)
                                                                     gCAATTCAAAAATCCGGCATGGTATTGCTTGATGATTTTGGCGACATTGTACTGAAGACAGCGGATTTATGTTCTGCCAAAGATGACTGTGTGCGACTGAAAAATGCGCTGGTCAATCTCGGCAACAATAAAGACTGGGACGCGCTGGTAAAACGCGCCAACGCCGGGAAGCTCGATGGCGTGAATGTGTTATTACGCCCGGTGAGTGCGGAATCGCGGGATAACCTGGTGGCAACCTCCACCGCGCCGTTTATCACGCATGAAACGGCGCGAGCgg                                                                                                                                                                                                                                 >  1:1083335/1‑277 (MQ=255)
                                                                           taaaaaGCCGGCAGTGTATTGCTTGTTGATTGTGTCGACATTGTACTGAAGACAGCGGATTTATGTTCTGCCAAAGATGACTGTGTGCGACTGAAAAATGCGCTGGTCAAGCTCGGCAACAGTAAAGACTGGGACGCGCTGGTAAAACGCGCCAACGCCGGGAAGCTCGATGGCGTGAATGTGTTATTACGCCCGGTGAGTGCGGAATCGCTGGATAACCTGGGGGCAACCTCCACCGCGCCGTTTATCACGCATGAAACGTCGCGAGCGGCACAATCACTAAACAGTc                                                                                                                                                                                                               <  2:1135644/288‑1 (MQ=255)
                                                                                           tATTGCTTGATGATTTTGGCGACATTGTACTGAAGACAGCGGATTTATGTTCTGCCAAAGATGACTGTGTGCGACTGAAAAATGCGCTGGTCAATCTCGGCAACAGTAAAGACTGGGACGCGCTGGTAAAACGCGCCAACGCCGGGAAGCTCGATGGCGTGAATGTGTTATTACGCCCGGTGAGTGCGGAATCGCTGGATAACCTGGTGGCAACCTCCACCGCGCCGTTTATCACGCATGAAACGGCGCGAGCGGCACAATCATTAAACAGTCCGGCCCCCGGCGGAt                                                                                                                                                                                                <  1:1004360/288‑1 (MQ=255)
                                                                                                   gatgatTTTGGCGACATTGTACTGAAGACAGCGGATTTATGTTCTGCCAAAGATGACTGTGTGCGACTGAAAAATGCGCTGGTCAATCTCGGCAACAGTAAAGACTGGGACGCGCTGGTAAAACGCGCCAACGCCGGGAAGCTCGATGGCGTGAATGTGTTATTACGCCCGGTGAGTGCGGAATCGCTGGATAACCTGGTGGCAACCTCCACCGCGCCGTTTATCACGCATGAAACGGCGCGAGCGGCACAATCACCAAACAGTCCGGCCCCCGGACGATTCCTGATTg                                                                                                                                                                                       >  2:321265/1‑289 (MQ=255)
                                                                                                     tgatTTTGGCGCCATTGTACTGAAGACAGCGGATTTATGTTCTGCTAAAGATGACTGTGTGCGACTGAAAAATGCGCTGGTCAATCTCGGCAACAGTAAAGACTGGGACGCGCTGGTAAAACGCGCCAACGCCGGGAAGCTCGATGTCGTGAATGTGTTATTACGCCCGGTGAGTGCGGAATCGCTGGATAACCTGGTGGCAACATCCACCGCGCCGTTTATCACGAATGAAACGGCGCAAGCGGCCCAATACCTaaa                                                                                                                                                                                                                    >  1:662751/1‑258 (MQ=255)
                                                                                                     tgatTTTGGCGACATTGTACTGAAGACAGCGGATTTATGTTCTGCCAAAGATGACTGTGTGCGACTGAAAAATGCGCTGGTCAATCTCGGCAACAGTAAAGACTGGGACGCGCTGGTAAAACGCGCCAACGCCGGGAAGCTCGATGGCGTGAATGTGTTATTACGCCCGGTGAGTGCGGAATCGCGGGATAACCTGGTGGCAACCTCCACCGCGCCGTTTATCACGCATGAAACGGCGCGAGCGGcac                                                                                                                                                                                                                              <  2:227572/248‑1 (MQ=255)
                                                                                                          ttGGCGACATTGTACTGAAGACAGCGGATTTATGTTCTGCCAAAGATGACTGTGTGCGACTGAAAAATGCGCTGGTCAATCTCGGCAACAGTAAAGACTGGGACGCGCTGGTAAAACGCGCCAACGCCGGGAAGCTCGATGGCGTGAATGTGTTATTACGCCCGGTGAGTGCGGAATCGCTGGATAACCTGGTGGCAACCCCCACCGCGCCGTTTATCACGCATGAAACGGCGCGCGCGGCACAATCACTAAACAGTCCGGCCCCCGGCGGATTCGTGATTGTCAGcg                                                                                                                                                                                 >  1:1481871/1‑288 (MQ=255)
                                                                                                                  aTTGTACTGAAGACAGCGGATTTATGTTCTGCCAAAGATGACTGTGTGCGACTGAAAAATGCGCTGGGCAATCTCGTCAACAGTAAAGACTGGGACGCGCTGGTAAAACGCGCCAACGCCGGGAAGCTCGATGGCGTGAATGTGTTATTACGCCCGGTGAGTGCGGAATCGCTGGATAACCTGGTGGCAACCTCCACCGCGCCGTTTATCACGCATGAAACGGCGCGAGCGGCACAATCACTAAACAGTCCGGCCCCCGGCGGATTCCTGAt                                                                                                                                                                                         <  2:494319/272‑1 (MQ=255)
                                                                                                                           aaGACAGCGGATTTATGTTCTGCCAAAGATGACTGTGTGCGACTGAAAAATGCGCTGGTCAATCTCGGCAACAGTAAAGACTGGGACGCGCTGGTAAAACGCGCCAACGCCGGGAAGCTCGATGGCGTGAATGTGTTATTACGCCCGGTGAGTGCGGAATCGCTGGATAACCTGGTGGCAACCTCCACCGCGCCGTTTATCACGCATGAAACGGCGCGAGCGGCACAATCACTAAACAGTCCGGCCCCCGGCGGAt                                                                                                                                                                                                <  1:1422298/256‑1 (MQ=255)
                                                                                                                           aaGACAGCGGATTTATGTTCTGCCAAAGATGACTGTGTGCGACTGAAAAATGCGCTGGTCAATCTCGGCAACAGTAAAGACTGGGACGCGCTGGTAAAACGCGCCAACGCCGGGAAGCTCGATGGCGTGAATGTGTTATTACGCCCGGTGAGTGCGGAATCGCTGGATAACCTGGTGGCAACCTCCACCGCGCCGTTTATCACGCATGAAACGGCGCGAGCGGCACAATCACTAAACAGGCCGGCCCCCGGCGGATTCCTGATTGTCAGCGACGAAGGCAGCGATTttg                                                                                                                                                               <  2:423870/289‑1 (MQ=255)
                                                                                                                            aGACAGCGGATTTATGTTCTGCCAAAGATGACTGTGTGCGACTGAAAAATGCGCTGGTCAATCTCGGCAACAGTAAAGACTGGGACGCGCTGGTAAAACGCGCCAACGCCGGGAAGCTCGATGGCGTGAATGTGTTATTACGCCCGGTGAGTGCGGAATCGCTGGATAACCTGGTGGCAACCTCCACCGCGCCGTTTATCACGCATGAAACGGCGCGAGCGGCACAATCACTAAACAGTCCGGCCCCCGGCGGATTCCTGATTGTCAGCGACGAAGGCAGCGATTttg                                                                                                                                                               <  1:1317003/288‑1 (MQ=255)
                                                                                                                                aGCGGATTTATGTTCTGCCAAAGATGACTGTGTGCGACTGAAAAATGCGCTGGTCAATCTCGGCAACAGTCAAGACTGGGACGCGCTGGTAAAACGCGACAACGCCGGGAATCTCGATGGCGTGAATGTGTTATTACGCACGATGAGTGCGGAATCGCTGGATAACCTGGTGGCAACCGTCACCGCGCCGTTTATCACGCAGGAAACGGAGCGAGCCGCCCAATCACTAAACAACCCGGACCACGGCGGACTCCATATTGTCCGCGGCGAAGGCAGCGCTCttgttgg                                                                                                                                                           >  2:538441/1‑287 (MQ=255)
                                                                                                                                aGCGGATTTATGTTCTGCCAAAGATGACTGTGTGCGACTGAAAAATGCGCTGGTCAATCTCGGCAACAGTAAAGACTGGGACGCGCTGGTAAAACGCGCCAACGCCGGGAAGCTCGATGGCGTGAATGTGTTATTACGCCCGGTGAGTGCGGAATCGCTGGATAACCTGGTGGCAACCTCCACCGCGCCGTTTATCACGCATGAAACGGCGCGAGCGGCACAATCACTAAACAGTCCGGCCCCCGGCGGATTCCTGATTGTCAGCGACGAAGGCAGCGATTTTGTTGa                                                                                                                                                           >  2:378327/1‑288 (MQ=255)
                                                                                                                                aGCGGATTTATGTTCTGCCAAAGATGACTGTGTGCGACTGAAAAATGCGCTGGTCAATCTCGGCAACAGTAAAGACTGGGACGCGCTGGTAAAACGCGCCAACGCCGGGAAGCTCGATGGCGTGAATGTGTTATTACGCCCGGTGAGTGCGGAATCGCTGGATAACCTGGTGGCAACCTCCACCGCGCCGTTTATCACGCATGAAACGGCGCGAGCGGCACAATCACTAAACAGTCCGGCCCCCGGCGGATTCCTGATTGTCAGCGACGAAGGCAGCGATTTTGTTGa                                                                                                                                                           >  1:1491410/1‑288 (MQ=255)
                                                                                                                                aGCGGATTTATGTTCTGCCAAAGATGACTGTGTGCGACTGAAAAATGCGCTGGTCAATCTCGGCAACAGTAAAGACTGGGACGCGCTGGTAAAACGCGCCAACGCCGGGAAGCTCGATGGCGTGAATGTGTTATTACGCCCGGTGAGTGCGGAATCGCTGGATAACCTGGTGGCAACCTCCACCGCGCCGTTTATCACGCATGAAACGGCGCGAGCGGCACAATCACTAAACAGTCCGGCCCACGGCGGCTGCCTGATTGTCATCGACGAAGGCAGCGActtgtgtatt                                                                                                                                                          >  1:1008784/1‑282 (MQ=255)
                                                                                                                                aGCGGATTTATGTTCTGCCAAAGATGACTGTGTGCGACTGAAAAATGCGCTGGTCAATCTCGGCAACAGTAAAGACTGGGACGCGCTGGTAAAACGCGCCAACGCCGGGAAGCTCGATGGCGTGAATGTGTTATTACGCCCGGTGAGTGCGGAATCGCTGGATAACCTGGTGGCAACCTCCACCGCGCCGTCTATCACGCATGAAACGGCGCGAGCGGCACAATCCCTAAACAGTCCGGCCCCCGGCGGATTCCTGTTTGTCCGCGACGAAGGCAGCGATTTTGTTGa                                                                                                                                                           >  1:1220082/1‑288 (MQ=255)
                                                                                                                                aGCGGATTTATGTTCTGCCAAAGATGACTGTGTGCGACTGAAAAATGCGCTGGTCAATCTCGGCAACAGTAAAGACTGGGACGCGCTGGTAAAACGCGCCAACGCCGGGAAGCTCGATGGCGTGAATGTGTTATTACGCCCGGTGAGTGCGGAATCGCGGGATAACCTGGTGGCAACCTCCACCGCGCCGTTTATCACGCATGAAACGGCGCGAGCGGCACAATCACTAAACAGTCCGGCCCCCGGCGGATTCCTGATTGTCAGCGACGAAGGCAGCGATTTTGTTGa                                                                                                                                                           >  1:1284260/1‑288 (MQ=255)
                                                                                                                                aGCGGATTTATGTTCTGCCAAAGATGACTGTGTGCGACTGAAAAATGCGCTGGTCAATCTCGGCAACAGTAAAGACTGGGACGCGCTGGTAAAACGCGCCAACGCCGGGAAGCTCGATGGCGTGAATGTGTTATTACGCCCGGTGAGTGCGGAATCGCGGGATAACCTGGTGGCAACCTCCACCGCGCCGTTTATCACGCATGAAACGGCGCGAGCGGCACAATCACTAAACAGTCCGGCCCCCGGCGGATTCCTGATTGTCAGCGACGAAGGCAGCGATTTTGTTGAt                                                                                                                                                          <  2:891208/289‑1 (MQ=255)
                                                                                                                                   ggATTTATGTGCTGCTAAAGATGACTGTGGGCGACTGAAAAATGCGCTGGTCAATCTCGACAACAGTAAAGACTGGGACGCGCTGGTAAAGCGCGCCAACGCCGGGGAGCTCGATGGCGGGAATTTGTTATTACGCCCGGTGAGTGCGGAATCGCTGGATAACCTGGTGGCAACCTCCACCGCTCCGTTTATCACGCATGAAACGGCGCGAGCGGCACAATCACTAAACAGTCCGGCCCCCGGCGGATTCCTGATTGTCAGCGACGAAGGCAGCGATTTTGTTGAt                                                                                                                                                          <  1:462564/286‑1 (MQ=255)
                                                                                                                                          tGTTCTGCCAAAGATGACTGTGTGCGACTGAAAAATGCGCTGGTCAATCTCGGCAACAGTAAAGACTGGGACGCGCTGGTAAAACGCGCCAACGCCGGGAAGCTCGATGGCGTGAATGTGTTATTACGCCCGGTGAGTGCGGAATCGCGGGATAACCTGGTGGCAACCTCCACCGCGCCGTTTATCACGCATGAAACGGCGCGAGCGGCACAATCACTAAACAGTCCGGCCCCCGGCGGATTCCTGATTGTCAGCGACGAAGGCAGCGATTTTGTTGATCAGCCCTgg                                                                                                                                                 >  1:75891/1‑288 (MQ=255)
                                                                                                                                                 ccAAAGATGACTGTGTGCGACTGAAAAATGCGCTGGTCAATCTCGGCAACAGTAAAGACTGGGACGCGCTGGTAAAACGCGCCAACGCCGGGAAGCTCGATGGCGTGAATGTGTTATTACGCCCGGTGAGTGCGGAATCGCTGGATAACCTGGTGGCAACCTCCACCGCGCCGTTTATCACGCATGAAACGGCGCGAGCGGCACAATCACTAAACAGTCCGGCCCCCGGCGGATTCCTGATTGTCAGCGACGAAGGCAGCGa                                                                                                                                                                    >  2:1433003/1‑262 (MQ=255)
                                                                                                                                                 ccAAAGATGACTGTGTGCGACTGAAAAATGCGCTGGTCAATCTCGGCAACAGTAAAGACTGGGACGCGCTGGTAAAACGCGCCAACGCCGGGAAGCTCGATGGCGTGAATGTGTTATTACGCCCGGTGAGTGCGGAATCGCTGGATAACCTGGTGGCAACCTCCACCGCGCCGTTTATCACGCATGAAACGGCGCGAGCGGCACAATCACTAAACAGTCCGGCCCCCGGCGGATTCCTGATTGTCAGCGACGAAGGCAGCGa                                                                                                                                                                    <  1:1433003/262‑1 (MQ=255)
                                                                                                                                                   aaaGATGACTGTGTGCGACTGAAAAATGCGCTGGTCAATCTCGGCAACAGTAAAGACTGGGACGCGCTGGTAAAACGCGCCAACGCCGGGAAGCTCGATGGCGTGAATGTGTTATTACGCCCGGTGAGTGCGGAATCGCGGGATAACCTGGTGGCAACCTCCACCGCGCCGTTTATCACGCATGAAACGGCGCGGGCGGCACAATCACTAAACAGTCCGGCCCCCGGCGGATTCCTGATTGTCAGCGACGAAGGCAGCGATTTTGTTGATCAGCCCTGGCCTTCGGCAt                                                                                                                                       <  1:380873/289‑1 (MQ=255)
                                                                                                                                                           cTGTGTGCGACTGAAAAATGCGCTGGTCAATCTCGGCAACAGTAAAGACTGGGACGCGCTGGTAAAACGCGCCAACGCCGGGAAGCTCGATGGCGTGAATGTGTTATTACGCCCGGTGAGTGCGGAATCGCTGGATAACCTGGTGGCAACCTCCACCGCGCCGTTTATCACGCa                                                                                                                                                                                                                                                  >  1:609617/1‑174 (MQ=255)
                                                                                                                                                           cTGTGTGCGACTGAAAAATGCGCTGGTCAATCTCGGCAACAGTAAAGACTGGGACGCGCTGGTAAAACGCGCCAACGCCGGGAAGCTCGATGGCGTGAATGTGTTATTACGCCCGGTGAGTGCGGAATCGCTGGATAACCTGGTGGCAACCTCCACCGCGCCGTTTATCACGCa                                                                                                                                                                                                                                                  <  2:609617/174‑1 (MQ=255)
                                                                                                                                                           cTGTGTGCGACTGAAAAATGCGCTGGTCAATCTCGGCAACAGTAAAGACTGGGACGCGCTGGTAAAACGCGCCAACGCCGGGAAGCTCGATGGCGTGAATGTGTTATTACGCCCGGTGAGTGCGGAATCGCGGGATAACCTGGTGGCAACCTCCACCGCGCCGTTTATCACGCATGAAACGGCGCGAGCGGCACAATCACTAAACAGTCCGGCCCCCGGCGGATTCCTGATTGTCAGCGACGAAGGCAGCGATTTTGTTGATCAGCCCTGGCCTTCGGCATCACTTTAc                                                                                                                               >  1:646967/1‑289 (MQ=255)
                                                                                                                                                                    aCTGAAAAATGCGCTGGTCAATCTCGGCAACAGTAAAGACTGGGACGCGCTGGTAAAACGCGCCAACGCCGGGAAGCTCGATTGCGTGAATGTGTTATTACGCCCGGTGAGTGCGGAATCGCGGGATAACCTGGTGGCAACCTCCACCGCGCCGTTTATCACGCATGAAACGGCGCGAGCGGCACAATCACTAAACAGTCCGGCCCCCGGCGGATTCCTGATTGTCAGCGACGAAGGCAGCGATTTTGTTGATCAGCCCTGGCCTTCGGCATCACTTTACGACTAccc                                                                                                                       <  1:1517065/288‑1 (MQ=255)
                                                                                                                                                                     cTGAAAAATGCGCTGGTCAATCTCGGCAACAGTAAAGACTGGGACGCGCTGGTAAAACGCGCCAACGCCGGGAAGCTCGATGGCGTGAATGTGTTATTACGCCCGGTGAGTGCGGAATCGCTGGATAACCTGGTGGCAACCTCCACCGCGCCGTTTATCACGCATGAAACGGCGCGAGCGGCACAATCACTAAACAGTCCGGCCCCCGGCGGCTTCCTGATTGTCAGCGACGCAGGCCTCAAATTTGTTGATCAGCCCTTGCCTTCGGCCTCACTTTACGACCACccg                                                                                                                      >  2:1526981/1‑288 (MQ=255)
                                                                                                                                                                                     taaaTCGCGGCAAAAGGAACGACTGGGACGCGCTGGGAAACCGGGCCAACGCCCGGAAGCTCGATGGCGAGAAGGTGTTATTACGCCCGGTGGGTGCGCAATCGCTGGATAACCTGGTGACACCATCCACCGCTCCGTTTATCACGCATGAAACGGCGCGAGCGGCACAATCACTAAACAGTCCGGCCCCCGGCGGCTTCCTGATTGTCAGCGACGAAGGCAGCGATTTTGTTGATCAGCCCTGGCCTTCGGCATCACTTTACGACTACCCGCCGCAAGAACAGTGGa                                                                                                      <  2:888986/286‑1 (MQ=255)
                                                                                                                                                                                              gCAACAGTAAAGACTGGGACGCGCTGGTAAAACGCGCCAACGCCGGGAAGCTCGATGGCGTGAATGTGTTATTACGCCCGGTGAGTGCGGAATCGCTGGATAACCTGGTGGCAACCTCCACCGCGCCGTTTATCACGCATGAAACGGCGCGAGCGGCACAATCACTAAACAGTCCGGCCCCCGGCGGATTCCTGATTGTCAGCGACGAAGGCAGCGATTTTGTTGATCAGCCCTGGCCTTCGGCATCACTTTACGACTACCCGCCGCAAGAACAGTGGAACGCTTTCCa                                                                                            >  2:10880/1‑289 (MQ=255)
                                                                                                                                                                                                  cAGTAAAGACTGGGACGCGCTGGTAAAACGCGCCAACGCCGGGAAGCTCGATGGCGTGAATGTGTTATTACGCCCGGTGAGTGCGGAATCGCGGGATAACCTGGTGGCAACCTCCACCGCGCCGTTTATCACGCATGAAACGGCGCGAGCGGCACAATCACTAAACAGTCCGGCCCCCGGCGGATTCCTGATTGTCAGCGACGAAGGCAGCGATTTTGTTGATCAGCCCTGGCCTTCGGCATCACTTTACGACTACCCGCCGCAAGAACAGTGGAACGCTTTCCAGaaa                                                                                        >  2:961372/1‑289 (MQ=255)
                                                                                                                                                                                                            tGGGACGCGCTGGTAAAACGCGCCAACGCCGGGAAGCTCGATGGCGTGAATGTGTTATTACGCCCGGTGAGTGCGGAATCGCTGGATAACCTGGTGGCAACCTCCACCGCGCCGTTTATCACGCATGAAACGgcg                                                                                                                                                                                                                                        >  1:939052/1‑135 (MQ=255)
                                                                                                                                                                                                            tGGGACGCGCTGGTAAAACGCGCCAACGCCGGGAAGCTCGATGGCGTGAATGTGTTATTACGCCCGGTGAGTGCGGAATCGCTGGAGAACCTGGTGGCAACCTCCACCGCGCCGTTTATCACGCATGAAACGgcg                                                                                                                                                                                                                                        <  2:939052/135‑1 (MQ=255)
                                                                                                                                                                                                            ggggaggggtgggTAAAACGCGCCAACGCCGGGAAGCTCGAGGGCGTGAATGTGTTATTACCCCCGGGGAGTGCGGAATCGCTGGATAACCTGGTGGCAACCTCCACCGCGCCGTTTATCACGCATGAAACGGCGCGAGCGGCACAATCACTAAACAGTCCGGCCCCCGGCGGATTCCTGATTGTCAGCGACGAAGGCAGCGATTTTGTTGATCAGCCCTGGCCTTCGGCATCACTTTACGACTACCCGCCGCAAGAACAGTGGAACGCTTTCCAGAAACTGGCACaaa                                                                              <  2:825243/278‑1 (MQ=255)
                                                                                                                                                                                                             gggACGCGCTGGTAAAACGCGCCAACGCCGGGAAGCTCGATGGCGTGAATGTGTTATTACGCCCGGTGAGTGCGGAATCGCTGGATAACCTGGTGGCAACCTCCACCGCGCCGTTTATCACGCATGAAACGGCGCGAGCGGCACAATCACTAAACAGTCCGGCCCCCGGCGGATTCCTGATTGTCAGCGACGAAGGCAGCGATTTTGTTGATCAGCCCTGGCCtt                                                                                                                                             <  1:1040888/225‑1 (MQ=255)
                                                                                                                                                                                                             gggACGCGCTGGTAAAACGCGCCAACGCCGGGAAGCTCGATGGCGTGAATGTGTTATTACGCCCGGTGAGTGCGGAATCGCTGGATAACCTGGTGGCAACCTCCACCGCGCCGTTTATCACGCATGAAACGGCGCGAGCGGCACAATCACTAAACAGTCCGGCCCCCGGAGGATTACTGATTGTCAGCGACGAAGGCAGCGATTTTGTTGATCAGCCCTGGCCTTCGGACGCACTTTACGACTAACCGCCGCAAGAATAGGGGAACGCTTTCACGAAACTGGCACAAAt                                                                             >  2:1520130/1‑289 (MQ=255)
                                                                                                                                                                                                             gggACGCGCTGGTAAAACGCGCCAACGCCGGGAAGCTCGATGGCGTGAATGTGTTATTACGCCCGGTGAGTGCGGAATCGCGGGATAACCTGGTGGCAACCTCCACcgcg                                                                                                                                                                                                                                                                >  1:59908/1‑110 (MQ=255)
                                                                                                                                                                                                             gggACGCGCTGGTAAAACGCGCCAACGCCGGGAAGCTCGATGGCGTGAATGTGTTATTACGCCCGGTGAGTGCGGAATCGCGGGATAACCTGGTGGCAACCTCCACCGCGCCGTTTATCACGCATGAAACGGCGCGAGCGGCACAATCACTAAACAGTCCGGCCCCCGGCGGATTCCTGATTGTCAGCGACGAAGGCAGCGATTTTGTTGATCAGCCCTGGCCTTCGGCATCACTTTACGACTACCCGCCCCAAGAACAGAGGAACGCTTTCCAGAAACTGGCCCAAAt                                                                             >  1:903577/1‑289 (MQ=255)
                                                                                                                                                                                                              ggACGCGCTGGTAAAACGCGCCAACGCCGGGAAGCTCGATGGCGTGAATGTGTTATTACGCCCGGTGAGTGCGGAATCGCGGGATAACCTGGTGGCAACCTCCACCGCGCCGTTTATCACGCATGAAACGGCGCGAGCGGCACAATCACTAAACAGTCCGGCCCCCGGCGGATTCCTGATTGTCAGCGACGAAGGCAGCGATTTTGTTGATCAGCCCTGGCCTTCGGCATCACTTTACGACTACCcgccgc                                                                                                                  <  1:412384/251‑1 (MQ=255)
                                                                                                                                                                                                               gACGCGCTGGTAAAACGCGCCAACGCCGGGAAGCTCGATGGCGTGAATGTGTTATTACGCCCGGTGAGTGCGGAATCGCTGGATAACCTGGTGGCAACCTCCACCGCGCCGTTTATCACGCATGAAACGGCGCGAGCGGCACAATCACTAAACAGTCCGGCCCCCGGCGGATTCCTGATTGTCAGCGACGAAGGCAGCGATTTTGTTGa                                                                                                                                                           <  2:647549/209‑1 (MQ=255)
                                                                                                                                                                                                                tcgcgCTGATAAATCGCGCCAACGCCGTGAAGCTCGGTGTGGTTAATGTGTTATTACGCCCGGTGAGTGCGTAATCGCTGAATATCCTGGTGGCAACCTCCACCGCGCCGTTTATCACGCATGAAACGGCGCGAGCGGCACAATCACTAAACAGTCCGGCCCCCGGCGGATTCCTGATTGTCAACGACGAAGGCAGCGATTTTGTTGATCAGCCCTGGCCTTCGGCATCACTTTACGACTACCCGCCGCAAGAACAGTGGAACGCTTTCCAGAAACTGGCACAAATGc                                                                           <  1:1026532/287‑1 (MQ=255)
                                                                                                                                                                                                                   cgcTGGTAAAACGCGCCAACGCCGGGAAGCTCGATGGCGTGAATGTGTTATTACGCCCGGTGAGTGCGGAATCGCTGGATAACCTGGTGGCAACCTCCACCGCGCCGTTTATCACGCATGAAACGGCGCGAGCGGCACAATCACTAAACAGTCCGGCCCCCGGCGGATTCCTGATTGTCAGCGACGAAGGCAGCGATTTTGTTGATCAGCCCTGGCCTTCGGCATCACTTTACGACTACCCGCCGCAAGAACAGTGGAACGCTTTCCAGAAACTGGCACAAATGCTGAt                                                                       >  1:514849/1‑289 (MQ=255)
                                                                                                                                                                                                                         tAAAACGCGCCAACGTCGGGAAGCTCGATGGTGTGAATGTTTTATTACGCCCGGTTAGTGCGGAACCGCTGGATAACCTGGTGGTAACCTCCACCGCGCCGTTTATCACGCATGAAACGGCGCTAGCGGCACAATCACTAAACAGTCCGGCCCCCGGCGGATTCCTGATTGTCAGCGACGAAGGCAGCGATTTTGTTGATCAGCCCTGGCCTTCGGCATCACTTTACGCCTACCCGCCGCAAGAACAGTGGAACGCTTTCCAGAAACTGGCACAAATGCTGATGCATa                                                                  <  1:1044822/288‑1 (MQ=255)
                                                                                                                                                                                                                         tAAAACGCGCCAACGCCGGGAAGCTCGATGGCGTGAATGTGTTATTACGCCCGGTGAGTGCGGAATCGCGGGATAACCTGGTGGCAACCTCCACCGCGCCGTTTATCACGCATGAAACGGCGCGAGCGGCACAATCACTAAACAGTCCGGCCCCCGGCGGATTCCTGATTGTCAGCGACGAAGGCAGCGATTTTGTTGATCAGCCCTGGCCTTCGGCATCACTTTACGACTACCCGCCGCAAGAACAGTGGAACGCTTTCCAGAAACTGGCACAAATGCTGATGCATa                                                                  <  2:646967/288‑1 (MQ=255)
                                                                                                                                                                                                                          aaaaCGCGCCAACGCCGGGAAGCTCGATGGCGGGAATGTGTTATTACGCCCGGTGAGTGCGGAATCGCTGGATAACCTGGTGGCAACCTCCACCGCGCCGTTTATCACGCATGAAACGGCGCGAGCGGCACAATCACTAAACAGTCCGGCCCCCGGCGGATTCCTGATTGTCAGCGACGAAGGCAGCGATTTTGTTGATCAGCCCTGGCCTTCGGCATCACTTTACGACTACCCGCCGCAAGAACAGTGGAACGCTTTCCAGAAACTGGCACAAATGCTGATGCATACg                                                                <  2:1491410/289‑1 (MQ=255)
                                                                                                                                                                                                                                  ccAACGCCGGGAAGCTCGATGGCGTGAATGTGTTATTACGCCCGGTGAGTGCGGAATCGCGGGATAACCTGGTGGCAACCTCCACCGCGCCGTTTCATGCGTGATAAACGGCGCGAGCGGCACAATCACTAAACAGTCCGGcccc                                                                                                                                                                                                        <  2:1333169/145‑1 (MQ=255)
                                                                                                                                                                                                                                  ccAACGCCGGGAAGCTCGATGGCGTGAATGTGTTATTACGCCCGGTGAGTGCGGAATCGCGGGATAACCTGGTGGCAACCTCCACCGCGCCGTTTATCACGCATGAAACGGCGCGAGCGGCACAATCACTAAACAGTCCGGCCCCCGGCGGATTCCTGATTGTCAGCGACGAAGGCAGCGATTTTGTTGATCAGCCCTGGCCTTCGGCATCCCTTTACGACTACCCGCCGCAAGAACAGTGGAACGCTTTCCAGAAACt                                                                                      >  2:752852/1‑259 (MQ=255)
                                                                                                                                                                                                                                  ccAACGCCGGGAAGCTCGATGGCGTGAATGTGTTATTACGCCCGGTGAGTGCGGAATCGCGGGATAACCTGGTGGCAACCTCCACCGCGCCGTTTATCACGCATGAAACGGCGCGAGCGGCACAATCACTAAACAGTCCGGCCCCCGGCGGATTCCTGATTGTCAGCGACGAAGGCAGCGATTTTGTTGATCAGCCCTGGCCTTCGGCATCACTTTACGACTACCCGCCGCAAGAACAGTGGAACGCTTTCCAGAAACt                                                                                      <  1:752852/259‑1 (MQ=255)
                                                                                                                                                                                                                                  ccAACGCCGGGAAGCTCGATGGCGTGAATGTGTTATTACGCCCGGTGAGTGCGGAATCGCGGGATAACCTGGTGGCAACCTCCACCGCGCCGTTTATCACGCATGAAACGGCGCGAGCGGCACAATCACTAAACAGTCCGGCCCCCGGCGGATTCCTGATTGTCAGCGACGAAGGCAGCGATTTTGTTGATCAGCCCTGGCCTTCGGCATCACTTTACGACTACCCGCCGCAAGAACAGTGGAACGCTTTCCAGAAACTGGCACAAATGCTGATGCATACGCCGTTTa                                                         >  1:220623/1‑288 (MQ=255)
                                                                                                                                                                                                                                  acAACGCCGGGAAGCTCTATGGCGTGAATGTGTTATTACGCCCGGGGAGTGCGGAATCGCTGGATAACCTGGTGGCAACCTCCACCGTGCCGTTTATCACGCATGAAACGGCGCGAGCGGCAACACAACTAAACAGTCCGGCCCCCGGCGGATTCATGATAGTCAGCGACGTAGGGAGCGATTTTGTTGAt                                                                                                                                                          >  2:874685/2‑191 (MQ=255)
                                                                                                                                                                                                                                      cgcgGGGAAGCTCGATGGCGGGAATGTGTTATTACGCCCGGTGAGTGCGGAATCGCGGGATAACCTGGTGGCAACCTCCACCGCGCCGTTTATCACGCATGAAACGGCGCGAGCGGCACAATCACTAAACAGTCCGGCCCCCGGCGGATTCCTGATTGTCAGCGACGAAGGCAGCGATTTTGTTGATCAGCCCTGGCCTTCGGCATCACTTTACGACTACCCGCCGCAAGAACAGTGGAACGCTTTCCAGAAACTGGCACAAATGCTGATGCATACGCCGTTTAACGcc                                                    <  1:778362/289‑1 (MQ=255)
                                                                                                                                                                                                                                         cGGGAAGGTGGATGGCGTGAATGTGTTATGCCGCCCGGTGAGGTCGGAATCGCGGGTTAACCTGGTGGCAACCTCCACCGGGCCGTTTATCACGCATGAAACGGCGCGGGCGGCACAATCACTAACCAGTCCGGCCCCCGGCGGATTCCTGATTGTCAGCGACGAAGGCAGCGATTTTGTTGATCAGCCCTGGCCTTCGGCATCACTTTACGACTACCCGCCGCAAGAACAGTGGAACGCTTTCCAGAAACTGGCACAAATGCTGATGCATACGCCGTTTAACGcc                                                    <  2:1290350/286‑1 (MQ=255)
                                                                                                                                                                                                                                           ggAAGCTCGATGGCGTGAATGTGTTATTACGCCCGGTGAGTGCGGAATCGCTGGATAACCTGGTGGCAACCTCCACCGCGCCGTTTATCACACATGAAACGGCGCGAGCGGCACAATCACTAAACAGTCCGGCCCCCGGCGGATTCCTGATTGTCAGCGACGAAGGCAGCGATTTTGTTGATCAGCCCTGGCCTTCGGCATCACTTTACGACTACCCGCCGCAAGAACAGTGGAACGCTTTCCAGAAACTGGcac                                                                                 <  1:511006/255‑1 (MQ=255)
                                                                                                                                                                                                                                                 tCGATGGCGTGAATGTGTTATTACTCCCGGTGAGTGCGGAATCGCTGGATAACCTGGTGGCAACCTCCACCGCGCCGTTTATCACGCATGAAACGGCGCGAGCGGCACAATCACTAAACAGTCCGGCCCCCGGCGGATTCCTGATTGTCAGCGACGAAGGCAGCGATTTTGTTGATCAGCCCTGGCCTTCGGCATCACTTTACGACTACCCGCCGCAAGAACAGTGGAACGCTTTCCAGAAACTGGCACAAATGCTGATGCATACGCCGTTTAACGCCGAGGGTATCGt                                         <  1:321265/289‑1 (MQ=255)
                                                                                                                                                                                                                                                    atcgCGTGAATGTGTTATTACGCCCGGTGAGTGCGGAATCGCGGGATAACCTGGTGGCAACCTCCACCGCGCCGTTTATCACGCCTGAAACGGCGCGAGCGGCACAATCACTAACCAGTCCGGCCCCCGGCGGATTCCTGATTGTCCGCGACGAAGGCAGCGATTTTGTTGATCAGCCCTGGCCTTCGGCATCCCTTTCCGACTACCCGCCGCCAGAACAGTGGAACGCTTTCTAGAAACTGGCGCCAATGCTGATTCATACGCCGTTTACCGCCGGGGCTACCGTca                                       >  2:1056431/4‑288 (MQ=255)
                                                                                                                                                                                                                                                     tgcagggaagtgtttattaCGCCCGGTGGGTGCGGAACCGCGGGATAACCTGGTGGCAACCTCACCCGCGCCGTTTATCACTCATGAAACGGCGCGAGCGGCACAATCACTAAACAGTCCGGCCCCCGGCGGATTCCTGATTGTCAGCGACGAAGGCAGCGATTTTGTTGATCAGCCCTGGCCTTCGGCATCACTTTACGACTACCCGCCGCAAGAACAGTGGAACGCTTTCCAGAAACTGGCACAAATGCTGATGCATACGCCG‑TTAACGCCGAGGGTATCGTcaca                                     <  2:263283/275‑1 (MQ=255)
                                                                                                                                                                                                                                                      ggggTGAAGGTGTTATTACGCCCGGTGAGTGCGGAATCGCTGGAAAACCTGGTGGCAACCTCCACCGCGCCGTTTATCACGCATGAAACGGCGCGAGCGGCACAATCACTAAACAGTCCGGCCCCCGGCGGATTCCTGATTGTCAGCGACGAAGGCAGCGATTTTGTTGATCAGCCCTGGCCTTCGGCATCACTTTACGACTACCCGCCGCAAGAACAGTGGAACGCTTTCCAGAAACTGGCACAAATGCTGATGCATACGCCGTTTAACGCCGAGGGTATCGTcaca                                     <  2:514849/285‑1 (MQ=255)
                                                                                                                                                                                                                                                          tGAATGTGTTATTACGCCCGGTGAGTGCGGAATCGCGGGATAACCTGGTGGCAACCTCCACCGCGCCGTTTATCACGCATGAAACGGCGCGAGc                                                                                                                                                                                                                                   >  1:299179/1‑94 (MQ=255)
                                                                                                                                                                                                                                                                    attaCGCCCGGTGAGTGCGGAATCGCGGGATAACCTGGTGGCAACCTCCACCGCGCCGTTTATCACGCATGAAACGGCGCGAGCGGCACAATCACTAAACAGTCCGGCCCCCGGCGGATTCCTGATTGTCAGCGACGAAGGCAGCGATTTTGTTGATCAGCCCTGGCCTTCGGCATCACTTTACGACTACCCGCCGCAAGAACAGTGGAACGCTTTCCAGAAACTGGCACAAATGCTGATGCATACGCCGTTTAACGCCGAGGGTATCGTCACAAAAATCTTCACTGAc                      >  1:66636/1‑289 (MQ=255)
                                                                                                                                                                                                                                                                          cccGGTGAGTGCGGAATCGCTGGATAACCTGGTGGCAACCTCCACCGCGCCGTTTATc                                                                                                                                                                                                                                                       >  1:554022/1‑58 (MQ=255)
                                                                                                                                                                                                                                                                          cccGGTGAGTGCGGAATCGCGGGATAACCTGGTGGCAACCTCCACCGCGCCGTTTATCACGCATGAAACGGCGCGAGCGGCACAATCACTAAACAGTCCGGCCCCCGGCGGATTCCTGATTGTCAGCGACGAAGGCAGCGATTTTGTTGATCAGCCCTGGCCTTCGGCATCACTTTACGCCTACCCGCCGCAAGACCAGTGGAACGCTTTCCAGAAACTGGCACAACAGCTGATGCATCCGCCGTTTAACGCCGAGGGTATCGTCAACAAAATCTTCACTTCCCCCAAt                >  2:1207746/1‑289 (MQ=255)
                                                                                                                                                                                                                                                                          cccGGTGAGTGCGGAATCGCGGGATAACCTGGTGGCAACCTCCACCGCGCCGTTTAGCACGCATGAAACGGCGCGAGCGGCACAATCACTAAACAGTCCGGCCGCCGGCGGATTCCTGATTGTCAGCGACGACGGCAGCGATTTTGTTGATCAGCCCTGGCCTTCGGCATCACTTTACGACTACCCGCAGCATGAACAGTGGAACCCTTTGCAGAAACTGGCACAAATGCTGATACCTACTGCGTTTAACTGCGAGGGTATCGTCCAAAAAATCTCCACTGACGCCAAt                >  2:938537/1‑289 (MQ=255)
                                                                                                                                                                                                                                                                             ggTGGGGGCGGAATCGCTGGATAACCGGGTGGCAACCTCCACCGCGCCGTTTATCACGCATGAAACGGCGGGAGCGGCACAATCACTAAACAGTCCGGCCCCCGGCGGATTCCGGATTGTCAGCGACGAAGGCAGCGATTTTGTTGATCAGCCCTGGCCTTCGGCATCACTTTACGACTACCCGCCGCAAGAACAGTGGAACGCTTTCCAGAAACTGGCACAAATGCTGATGCATACGCCGTTTAACGCCGAGGGTATCGTCACAAAAATCTTCACTGACGCCAATGGt             <  2:1014770/289‑1 (MQ=255)
                                                                                                                                                                                                                                                                              gTGAGTGCGGAATCGCGGGATAACCTGGTGGCAACCTCCACCGCGCCGTTTATCACGCATGAAACGGCGCGAGCGGCACAATCACTAAACAGTCCGGCCCCCGGCGGATTCCTGATTGTCAGCGACGAAGGCAGCGATTTTGTTGATCAGCCCTGGCCTTCGGCATCACTTTACGACTACCCGCCGCAAGAACAGTGGAACGCTTTCCAGAAACTGGCACAAATGCt                                                                          >  1:1402344/1‑227 (MQ=255)
                                                                                                                                                                                                                                                                               tGAGTGCGGAATCGCTGGATAACCTGTTGGCAACCTCCACCGCGCCGTTTATCACGCATGAAACGGCGCGAGCGGCACAATCACTAAACAGTCCGGCCCCCGGCGTATTCCTGATTGTCAGCGACGAAGTCAGCGATTTTGTTGATCAGCCCTGGCCTTCGGCATCACTTTACGACTACCCGCCGCAAGAACAGTGGAACGCTTTCCAGAAACTGGCACAAATGCTGATGCATACGCCGTTTAACGCCGAGGGTATCGTCACAAAAATCTTCACTGACGCCAATGGTa            <  1:1155346/288‑1 (MQ=255)
                                                                                                                                                                                                                                                                               tGAGTGCGGAATCGCGGGATAACCTGGTGGCAACCTCCACCGCGCCGTTTATCACGCATGAAACGGCGCGAGCGGCACAATCACTAAACAGTCCGGCCCCCGGCGGATTCCTGATTGTCAGCGACGAAGGCAGCGATTTTGTTGATCAGCCCTGGcc                                                                                                                                               >  1:888518/1‑157 (MQ=255)
                                                                                                                                                                                                                                                                                  gTGCGGACTCCTTGAATAGCCGGGTGGCAACCTCCACTGCGCCGTTTAGGACGCAGTGAACGGTGGGAGGCGAACAATGACGAAACAGGCCGGCCCCCGGCTGATTCCTGATTGCAAGGAACGAAGGCAGCAATTTGGTTGATCAGCCCGGTCCTTCGGCATAACATTACGACTACCCGCCGCAAGAACAGTGGAACGCTTTCCAGAAACTGGCACAAATGCTGATGCATACGCCGTTTAACGCCGAGGGTATCGTCACAACAATCTTCACTGACGCCAATGGTACgc         <  2:733079/288‑1 (MQ=255)
                                                                                                                                                                                                                                                                                   ggCGGAATCGCGGGATAACCGGGTGCCAACCTCCACCGCCCCGTTTATCACGCATGAAACGGCGCGAGCGGCACAATCACTAAACAGTCCGGCCCCCGGCCGATTCCTGATTGTCAGCGACGAAGGCAGCGATTTTGTTGATCAGCCCTGGCCTTCGGCATCACTTTACGCCTACCCGCCGCAAGAACAGTGGAACGCTTACCAGAAACTTGCACAAATGCTGATGCATACGCCGTTTAACGCCTAGGGTATCGTCACAAAAATCTTCACTGACGCCAATGGTACgca        <  1:938537/287‑1 (MQ=255)
                                                                                                                                                                                                                                                                                         ttCGGTGGAGAACCTGGTGGCAGCCTCCACCTCGCCCTGTCGAACGCATGAAACGGCGCGCGAGGCACACTCACTACACCGTCCGCCCCCCGGCGGATGCCTGATGGGCAGCGACGAAGGCAGCGATTTGGTTGATCAGCCCTGGCATTCGGCATCACTTTACGACTACCCGCCGCAAGAACAGTGGAACGCTTTCCAGAAACTGGAACAAATGCTGATGCATACGCCGTTTAACGCCGAGGGTATCGTCACAAAAATCTTCACTGACGCAAATGGTACGCAGCatat  <  2:1381658/287‑1 (MQ=255)
                                                                                                                                                                                                                                                                                              |                                                                                                                                                                                                                                                                                          
GAAGCAGTTAATCGCCAGCTGCACCCTAAACCGGAAGATGAATCTCGCGTCAGTGCCTCATTACGTTCAGCAATTCAAAAATCCGGCATGGTATTGCTTGATGATTTTGGCGACATTGTACTGAAGACAGCGGATTTATGTTCTGCCAAAGATGACTGTGTGCGACTGAAAAATGCGCTGGTCAATCTCGGCAACAGTAAAGACTGGGACGCGCTGGTAAAACGCGCCAACGCCGGGAAGCTCGATGGCGTGAATGTGTTATTACGCCCGGTGAGTGCGGAATCGCTGGATAACCTGGTGGCAACCTCCACCGCGCCGTTTATCACGCATGAAACGGCGCGAGCGGCACAATCACTAAACAGTCCGGCCCCCGGCGGATTCCTGATTGTCAGCGACGAAGGCAGCGATTTTGTTGATCAGCCCTGGCCTTCGGCATCACTTTACGACTACCCGCCGCAAGAACAGTGGAACGCTTTCCAGAAACTGGCACAAATGCTGATGCATACGCCGTTTAACGCCGAGGGTATCGTCACAAAAATCTTCACTGACGCCAATGGTACGCAGCATAT  >  NC_000913/3527822‑3528390

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A