Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A3 F28 I0 R1
|
51 |
55.9 |
1320120 |
86.3% |
1139263 |
218.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NC_000913 |
4,184,543 |
C→A |
100% |
P1100Q (CCG→CAG) |
rpoB → |
RNA polymerase, beta subunit |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 4,184,543 | 0 | C | A | 100.0%
| 198.7
/ ‑6.7
| 56 | P1100Q (CCG→CAG) | rpoB | RNA polymerase, beta subunit |
| Reads supporting (aligned to +/- strand): ref base C (1/0); new base A (28/27); total (29/27) |
| Rejected as polymorphism: E-value score below prediction cutoff. |
| Rejected as polymorphism: Frequency below/above cutoff threshold. |
| Rejected as polymorphism: Variant not supported by required number of reads on each strand. |
AACTCGAAGCGAAACGCCGCAAAATCACCCAGGGCGACGATCTGGCACCGGGCGTGCTGAAGATTGTTAAGGTATATCTGGCGGTTAAACGCCGTATCCAGCCTGGTGACAAGATGGCAGGTCGTCACGGTAACAAGGGTGTAATTTCTAAGATCAACCCGATCGAAGATATGCCTTACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCCGCTGGGCGTACCGTCTCGTATGAACATCGGTCAGATCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGTATCGGCGACAAGATCAACGCCATGCTGAAACAGCAGCAAGAAGTCGCGAAACTGCGCGAATTCATCCAGCGTGCGTACGATCTGGGCGCTGACGTTCGTCAGAAAGTTGACCTGAGTACCTTCAGCGATGAAGAAGTTATGCGTCTGGCTGAAAAC > NC_000913/4184327‑4184769
|
aaCTCGAAGGGAAACGCCGCAAAATCCCCCAGGGCGACGATCTGGCACCGGGCGTGCTGAAGATTGTTAAGGTATATCGGGCGGTTAAACGCCGTATCCAGCCTGGTGACAAGATGGCAGGTCGTCACGGTAACAAGGGTGTAATTTCTAAGATCAACCCGATCGAAGATATGCCTTACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTa < 1:113857/227‑1 (MQ=255)
aCGCCGAAAAATCCCCCAGGGCAACGACCTGGCACCGGGCGTGCTGAAGATTGTTAAGGTATATCTGGCGGTTAAACGCCGTATCCAGCCTGGTGACAAGATGGCAGGTCGGCACGGTAACAAGGGTGTAATTTCTAAGATCAACCCGATCGAAGATATGCCTTACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGaa < 1:272795/228‑1 (MQ=255)
cgcgcAAAATCACCCAGGGCGACGGTCTGGCCCCGGGCGTGCTGAAGATTGGTAAGGTATATCTGGCGGTTAAACGCCGTATCCAGCCTGGTGACAAGATGGCAGGTCGTCACGGTAACAAGGGTGTAATTTCTAAGATCAACCCGATCGAAGATATGCCTTACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACa < 2:116987/226‑1 (MQ=255)
aCCCTGGGCGGCGATCTGGCCCCGGGCGGTCAGAAGTGTGTTAAGGTATATCGGGGGGTTAAACGCTGTATACAGCCTGGTGAAAAGATGGCAGGTCGGCACGGTAACAAGGGGGTAATGTCTAAGAACAACCCGATCGAAGATATTCCTTACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGACTCGTATGAACATCGGTCAGa < 2:24123/226‑1 (MQ=255)
gaacTGGCCACGGGCATTCGGAAGTTTGGTAAGGTATATCGGGCGGTTAAACGCCGTATCCAGCCTGGTGACAAGGTGGCAGGTCGTCACGGTAACAAGGGTGTAATTTCTAAGATCAACCCGATCGAAGATAGGCCTTACGATGAAAACGGCACGCCGGTAGGCATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAGATCCTCGAAACCCAc < 1:418337/225‑1 (MQ=255)
gaTTTGGCACCGGGCGTGCTGAAGATTGTTAAGGTATATCTGGCGGTTAAACGCCGTATCCAGCCTGGTGACAAGATGGCAGGTCGGCACGGTAACAAGGGTGTAATTTCTAAGATCAACCCGATCGAAGATATGCCTTACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAGATCCTCGAAACCCAc < 2:622891/228‑1 (MQ=255)
cttcaggCGCCTGGGGTGCTGAGGATTGTGAAGGTATATCGGGCTGTTAAACGCGGTAGCCTGGCTGGTGACAAGATGGCAGGTCGGCACGGTAACAAGGGTGTAATTTCTAAGAGCAACCCGATCGAAGATATGCCTTACGATGAAAACGGTACGCCGGTAGACATCGTACGGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAGATCCTCGAAACCCAc < 2:85934/223‑1 (MQ=255)
ggCGTGCTGCAGATTGTTAAGGTATATCTGGCGGTTAAATGCCGTATCCAGACTGGTGACAAGGTGGCAGGTCGTCACGGGAACAAGGGCGTAATTTCTAAGATCAACCCGATCGAAGATATGCCTTACGATGAAAACGGTACGCCGGTAAACATACAACTGACCCCGCCGGGCGTACCGTCTCGTATGAATCTCGATCAGATCCTCGAACACCACCTGGGCATgggt > 2:135270/1‑226 (MQ=255)
ggCGTGCTGAAGATTGTTAAGGTATATCTGGCGGTTAAACGCCGTATCCAGCCTGGTGACAAGATGGCAGGTCGTCACGGTAACAAGGGTGTAATTTCTAAGATCAACCCGATCGAAGATATGCCTTACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGGATGAACATCGGCCAGATCCTCGAAACCCACCTGGGAATggtg > 2:91017/1‑226 (MQ=255)
ggCGTGCTGAAGATTGTTAAGGTATATCTGGCGGTTAAACGCCGTATCCAGCCTGGTGACAAGATGGCAGGTCGTCACGGCAACAAGGGTGTAATTTCTAAGATCAACCCGATCGAAGATATGCCTTACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAGATCCTCGAAACCCACCTGGGTATgcg > 1:79027/1‑225 (MQ=255)
ttcTGAAGATTGTTAAAGTTATTCTGGCGGTTAAACGCCGTATGCAGCCTGGTGACAAGATGGCAGGCCGTCACGGTAACAAGGGTGGAATTTCTAAGATCAACCCGATCGAAGATATGCCTTACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAGATCCTCGAAACCCACCTGGGTATGGCTGCGa < 1:654533/226‑1 (MQ=255)
cTGAAGATTGTTAAGGTATATCGTGCGGTTAAACGTCGTATCCAGCCTGGTGACAAGATGGCAGGTCGTCACGGTAACAAGGGTGTAATTTCTAAGATCAACCCGATCGAAGATATGCCTTACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAGATCCTCGAAACCCACCTGGGTATGGCTGCGaa < 1:177949/227‑1 (MQ=255)
tGTTAAGGTATATCTGGCGGTTAAACGCCGTATCCAGCCTGGTGACAAGATGGCAGGTCGTCACGGTAACAAGGGTGTAATTTCTAAGATCAACCCGATCGAAGATATGCCTTACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAAAAACGGTCAGATCCTCGAAACCCACCTGGGTATGTCTCCGAAAGGCATCgg > 1:304743/1‑228 (MQ=255)
tatCTGGCGGTTAAACGCCGTATCCAGACTGGTGACAAGATGGCAGGTCGTCACGGTAACAAGGGAGTAATTTCTAAGATCAACCCGATCGAAGATATGCCTTACGATGAAAACGGTACGCCGGTAGACATCGTACTGCACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAGTTCCCCACAATCCCCCGGGGTATGGTTGCGAAACGGATCGGCGCCAAGAta > 1:185938/1‑227 (MQ=255)
catCTGGCGGTTAAACGCCGTATCCAGCCTGGTGCCAAGATGGCAGGGCGTCACGGTAACAAGGGTGTAATTTCTAAGATCAACCCGATCGAAGATATGCCTTACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAGATCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGTATCGGCGACAAGAt < 1:590090/226‑1 (MQ=255)
atCTGGCGGTTAAACGCCGTATCCAGCCTGGTGACAAGATGGCAGGTCGTCACGGTAACAAGGGTGTAATTTCTAAGATCAACCCGATCGAAGATATGCCTTACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGCCAGATCCTCGAAACCCACCTGGGCATGGCTGCGAAAGGTATCGGCGACAAGATCa > 1:26605/1‑228 (MQ=255)
gCGGTTAAACGCCGTATCCAGCCTGGTGACAAGATGGCAGGTCGTCACGGTAACAAGGGTGTAATTTCTAAGATCAACCCGATCGAAGATATGCCTTACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAGGTCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGCATCGGCGACAAGCTCAAcccc > 1:199243/1‑228 (MQ=255)
tATCCAGCCTGGTGACAAGATGGCAGGTCGTCACGGTAACAAGGGTGTAATTTCTAAGATCAACCCGATCGAAGATATGCCTTACGATGAAAACGGTACGCCGGTAGACATCGTAATGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAGATCCTCAAAACCCACCAGGGTATGGCTGCGAAAGGTATCAGCGACAAGAACAACGCCCTACGTAAAcaga > 2:540519/1‑226 (MQ=255)
gCCTGGTGACAAGATGGCAGGTAGTCACGGTAACAAGGGTGTAATTTCTAAGATCAACCCGATCGAAGATATGCCTTACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAGATCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGTATCGGCGACAAGATCAACGCCATGCTGAAACAGCAGCaaga < 1:465265/228‑1 (MQ=255)
cgggagaaaaGATTGCTGGTTGTCAGGGTAACAGGGGTGTATTTTCTAAGATAAACCCGATCGAAGATATGGCTTGCGAGTAAAACGGTACGCCGTTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAGATCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGTATCGGCGACAAGATCAACGCCATGCTGAAACAGCAGCaaga < 2:186039/218‑1 (MQ=255)
cTGGTGAAAAGATGGCAGGTCGGCAAGGTAACAAGGGTGTAATTTCTAAGACCAACCCGATCGAAGATATGCCTTACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAGATCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGTATCGGCGACAAGATCAACGCCATGCTGAAACAGCAGCaagaag < 2:85696/228‑1 (MQ=255)
aGGGCGTCAACGTAACAAGGGTGTAAGTTCTAAGATCAACCCGATCGAAGATATGCCTTACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAGATCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGTATCGGCGACAAGATCAACGCCATGCTGAAACAGCAGCAAGAAGTCGCGAAACTGcgcg < 1:581440/227‑1 (MQ=255)
ggTCGTCACGGTAACAAGGGTGTAATTTCTAAGATCAACCCGATCGAAGATATGCCTTACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAGATCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGTATCGGCGACAAGATCAACGCCATGCTGAAACAGCAGCAAGAAGTCGCGAAACTGCGCGaa < 2:36215/228‑1 (MQ=255)
gtcgtcACGGTAACAAGGGTGTAATTTCTAAGATCAACCCGATCGAAGATATGCCTTACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAGATCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGTATCGGCGACCAGATCAACGCCATGCTGAAACAGCAGCAAGAAGGCGCGAAACTGCGCGAAt > 1:397376/1‑228 (MQ=255)
aCGGTAACAAGGGTGTAATTTCTAAGATCAACCCGATCGAAGATATGCCTTACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAGATCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGTATCGGCGACAAGATCAACGCCATGCTGAAACAGCAGCAAGAAGTCGCGAAACTGCGCGAATTCATcc < 1:91017/228‑1 (MQ=255)
ttaCAAGGGTGAAAATTGTAAGACCAACCCGATCGGAGATATGCCTTACCGTGAAAACGTTCCGCAGGTAGACATCGTACTGAACCAGCTGGGCGGACCGTCTCGTATGAACATCGGTCAGATCCTCGAAACCCGCCTGGGTATGGCTGCGAAAGGTATCGGCGACAAGATCAACGCCCTGCTGAAACAGCAGCAAGAAGTCGCGAAACTGCGCGAAGTCATCCAgcg < 2:458296/226‑1 (MQ=255)
ataaGGGTGTAATTTCTAAGATCAACCCCGTCGAAGCATTGCCTTACGATGAAACCGGTACGGCGGTAGACAGCCGACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAGATCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGTATCGGCGACAAGATCAACGCCATGCTGAAACAGCAGCAAGAAGTCGCGAAACTGCGCGAATTCATCCAgc < 2:185938/223‑1 (MQ=255)
gtAATTTCTAAGATCAACCCGATCGAAGATATGCCTTACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAGATCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGTCTCGGCGACAAGATCAACGCCATGCTGAAACAGCAGCAAGAAGTCGGGAAACTGCCCAAATTCATCAAGCGTGGGGACGaa > 2:631542/1‑227 (MQ=255)
tAATTTCTAAGATCAACCCGATCGAAGATATGCCTTACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAGATCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGTATCGGCGACAAGATCCACGCCATGCTGAAACAGCAGCAAGAAGTCGCGAAAAGACGCGAATTAACCCAccgcgcgtcccacc > 2:511689/1‑222 (MQ=255)
cTAAGATCAACCCGATCGAAGATATGCCTTACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAGATCCTCGAAACCCACCTGGGAATGGCTGCGAAAGGAATCGGCGACAAGCTAAACGCCCTGCTGAAACAGCAGCAAGAAGGCGCGAAACTGCGCGAATTCACCCAGGGGGAGGACGAACTGGgc > 2:131982/1‑227 (MQ=255)
aaGATCAACCCGATCGAAGATATGCCTTACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAGATCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGGATCGGCGCCAAGATCAACCCCATGCTGAAACAGCAGCCAGAAGTCGCGGAACTGCGCGAATTCATCCAGCGAGCGTACCAACTGGgcgcg > 2:198717/1‑227 (MQ=255)
tCGAAGATATGCCTTACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAGATCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGTATCGGCGACAAGATCAACGCCATGCTGAAACAGCAGCAAGAAGTCGCGAAACTGCGCGAATTCATCCAGCGTGCGTACGATCTGGGCGCTGACGTTCGTCAGa > 1:390762/1‑228 (MQ=255)
gattggCCTTCCGGTGAAAGCGGTTCGGCGGGAGACCTCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAGATCCTCGAACCCCACCTGGGTATGGCTGCGAAAGGTATCGGCGACAAGATCAACGCCATGCTGAAACAGCAGCAAGAAGTCGCGAAACTGCGCGAATTCATCCAGCGTGCGTACGATCTGGGCGCTGACGTTCGTCAGAAAGtt < 2:644449/223‑1 (MQ=255)
gATATGTCTTACGATGAAACCGTTACGCCGGTAGGCATCGTACTGAACCAGCGGGGCGTACCGGCTCGGATGAACAGCGGTCAGGTCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGTAGCGGCGACAAGATCAACGCCATGCTGAAACAGCAGCAAGAAGTCGCGAAACTGCGCGAATTCATCCAGCGTGCGTACGATCTGGGCGCTGACGTTCGTCAGAAAGtt < 2:511039/228‑1 (MQ=255)
gATATGCCTTACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAGATCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGTATCGGCGACAAGATCAACGCCATGCTGAAACAGCAGCAAGAAGTCGCGAAACTGCGCGAATTCATCCAGCGTGCGTACGATCTGGGCGCTGACGTTCGTCAGAAAGtt < 1:443808/228‑1 (MQ=255)
tGCCTTACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAGATCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGTATCGGCGACAAGATCAACGCCATGCTGAAACAGCAGCAAGAAGTCGCGAAACTGCGCGAATTCATCCAgcgtgcgt > 2:73159/1‑192 (MQ=255)
gCCTTACGATGAAAACTGTACGCCGGTAGACATCGTACTGAACCAGCTGGGAGTACCGTCTCGTATGAACATCGGTCAGATCCTCGAACCCCACCTGGGTCTGGCTGCGAAAGGTATCGGCCACAAGATCAACGCCCAGCTGAAAACGCCGAAAGAATTCCGGCAACTACGCGAATCCATCCCGCGTGCGTACGGCATTGGCGCCGCCGTTCGTCGGAAAGTTGa > 2:476328/1‑225 (MQ=255)
gCCTTACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAGATCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGTATCGGCGACAAGATCAACGCCATGCTGAAACAGCAGCAAGAAGTCGCGAAACTGCGCGAATTCATCCAGCGTGCGTa < 1:73159/192‑1 (MQ=255)
gCCTTACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAGATCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGTATCGGCGACAAGATCAACGCCATGCTGAAACAGCAGCAAGAAGTCGCGAAACTGCGCGAATTCATCCAGCGTGCGTACGATCTGGGCGCTGACGTTCGTCAGAAAGTTGACCt > 1:606621/1‑228 (MQ=255)
gCCTTACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAGATCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGGATCGGCGACAAGATCAACGCCATGCTGAAACAGCAGCAAGAAGTCGCGAAACAGACCGAATTCATCCAGCGCGCGTACGAGCTGGGCCCCGACCTTCGTCAGAAAATTAACCt > 2:595926/1‑228 (MQ=255)
cTTACGATGAAAACGGGTCGCCGGTAGACATCGGACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAGATCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGTATCGGCGACAAGATCAACGCCATGCTGAAACAGCAGCAAGAAGTCGCGAAACTGCGCGAATTCATCCAGCGTGCGTACGATCTGGGCGCTGACGTTCGTCAGAAAGTTGACCTGa < 2:304743/228‑1 (MQ=255)
cGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAGATCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGTATCGGCGACAAGATCAACGCCATGCTGAAACAGCAGCACGAAGTCGCGAAACTACGCGAATTCCTCCAGCGTGCTTCCTATCTGGGAGCTGACGTTCGTCAAAAATTTGACCTGCGTAc > 1:302445/1‑228 (MQ=255)
tGAAAACGGTACGCCGGTAGACATCGAACTGAACCAGCTGGGCGTAGCGTCTCGTATGAACATCGGTCAGATCCTCGAAACCCGCCTGGGTAGGGCTGCGAAAGGTATCGGCGACAAGATCAACGCCATGCTGAAACAGCAGCAAGAAGTCGCGAAACTGCGCGAATTCATCCAGCGTGCGTACGATCTGGGCGCTGACGTTCGTCAGAAAGTTGACCTGAGTACCtt < 1:197552/228‑1 (MQ=255)
aaaaCGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAGATCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGTATCGGCGACAAGATCAACGCCATGCTGAAACAGCAGCAAGAAGTCGCGAAACTGCGCGAATTCATCCAGCGGGCGTACGATCTGGGCGCTGACGTTCGCCAGAAAGTTGCCCTGAGTACCTTCa > 1:152392/1‑228 (MQ=255)
aaaaCGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAGATCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGTATCGGCGACAAGATCAACGCCATGCTGAAACAGCAGCAAGAAGTCGCGAAACTGCGCGAATTCATCCACCGTGCGTCCGACCTGGGCGGTGCAGTTCGCCAGAAAGTTGACCTGAGTAccctaa > 2:214566/1‑224 (MQ=255)
aaaCGGTACGCCGGTAGACATCGTACGGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAGATCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGTATCGGCGACAAGATCAACGCCATGCTGAAACAGCAGCAAGAAGTCGCGAAACTGCGCGAATTCATCCAGCGTGCGTACGATCTGGGCGCTGACGTTCGTCAGAAAGTTGACCTGAGTACCTTCAg < 2:606621/228‑1 (MQ=255)
aCGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAGATCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGTATCGGCGACAAGATCAACGCCATGCTGAAACAGCAGCAAGAAGTCGCGAAACTGCGCGAATTCATCCAGCGTGCGTACGATCTGGGCGCTGACGTTCGTCAGAAATGTGACCCAAGGACCTTCAGCgcgaa > 2:58550/1‑223 (MQ=255)
aTCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAGATCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGTATCGGCGACAAGATCAACGCCATGCTGAAACAGCAGCAAGAAGTCGCGAAACTGCGCGAATTAATCCAGCGTGCGTACGATCTGGGCGCTGCCGTTCGTCAGAAAGTTGACCTGAGAACCTTAAGCGATGAAGAGGTTATGct > 1:650626/1‑226 (MQ=255)
cGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAGATCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGTATCGGCGACAAGATCAACGCCATGCTGAAACAGCAGCAAGAAGTCGCGAAACTGCGCGAATTCATCCAGCGTGCGTACGATCTGGGCGCTGACGTTCGCCAGAAAGTTTACCTGAGTACCTTCAGCGATGAAAAAGTTATGCGTc > 2:313647/1‑227 (MQ=255)
cGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAGATCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGGATCGGCGACAAGATCAACGCCATGCTGAAACAGCAGCAAGAAGTCGCGAAACTGCGCGAATTCATCCAGCGTGCGTACGATCTGGGCGCTGACGTTCGTCAGAAAGTTGACCTGAGTACCTTCAGCGATGAAGAAGTTAGGCGt > 1:399505/1‑226 (MQ=255)
gtaacgAACCAGCGGGGCGGACCGTTTCGTATGAACATCGTGCAGGACCTCGAAACCCCCCTGGGTATGGCTGCGAAAGGTATCGGCGACAAGATCAACGCCATGCTGAAACAGCAGCAAGAAGTCGCGAAACGGCGCGAATTCATCCAGCGTGCGTACGATCTGGGCGCTGACGTTCGTCAGAAAGTTGACCTGAGTACCTTCAGCGATGAAGAAGTTa < 2:399505/215‑1 (MQ=255)
tACTGAACCAGCTGGGCGTACCGTCCCGTATGAACATCGGTCAGATCCTCGACACCGACCTGGGTATGGCTGCGAAAGGTATCGGCGACAAGATCAACGCCATGCTgca > 1:91429/1‑107 (MQ=255)
aCTGAACCAGCTGGGCGTACCGTCTCGTATGACAATCGGTCAGATCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGTATCGGCGACAAGATCAACGCCATGCTGaaa < 2:91429/109‑1 (MQ=255)
tGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAGATCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGTATCGGCGACAAGATCAACGCCATGCTGAAACAGCACCAAGAAGTCGCGAAACTGCTCGAATTCATCCAGCGTGCGTACGATCTGGGCGCTGACGTTCGTCGGAAAGTTGCCCTGAGTACCTTCAGCGATGAAGAAGTAATGCGTCGGGCTg > 2:25606/1‑228 (MQ=255)
aaCCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAGATCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGTATCGGCGACAAGATCAACGCCATGCTGAAACAGCAGCAAGAAGTCGCGAAACTGCGCGAATTCATCCAGCGTGCGTACGATCTGGGCGCTGACGTTCGTCAGAAAGTTGACCTGAGTACCTCAAGCGATGAAGAAGTTAGGCGTCTGGCTgca > 1:579801/1‑226 (MQ=255)
aaCCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAGATCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGTATCGGCGACAAGATCAACGCCATGCTGAAACAGCAGCAAGAAGTCGCGAAACTGCGCGAATTCATCCAGCGGGCGTACGATCTGGGCGCTGACGTTCGTCAGAAAGTTGACCTGAGTACCTTCAGCGATGCAGAAGTTATGCGTCTGGCGGaa > 1:650678/1‑228 (MQ=255)
ccGGTGGGCCTACCGTCTCGTTAGAACATCGGTCAGATCCTCGAACACCACCTGGGTATGGCTGCGAAAGGTATCGGCGACAAGATCAACGCCATGCTGAAACAGCAGCAAGAAGTCGCGAAACTGCGCGAATTCATCCAGCGTGCGTACGATCTGGGCGCTGACGTTCGTCAGAAAGTTGACCTGAGTACCTTCAGCGATGAAGAAGTTATGCGTCTGGCTGaaacc < 1:540519/228‑3 (MQ=255)
ccGCTGGGGGGACCGTCTCGTATGAACAGCGGGCAGATCCCCGAAACCCACCTGGGTATGGCTGCGAAAGGTATCGGGGACAAGATCAACGCCATGCTGAAACAGCAGCAAGAAGTCGCGAAACTGCGCGAATTCATCCAGCGTGCGTACGATCTGGGCGCTGACGTTCGTCAGAAAGTTGACCTGAGTACCTTCAGCGATGAAGAAGTTATGCGTCTGGCTGAAAAc < 2:199243/228‑1 (MQ=255)
|
AACTCGAAGCGAAACGCCGCAAAATCACCCAGGGCGACGATCTGGCACCGGGCGTGCTGAAGATTGTTAAGGTATATCTGGCGGTTAAACGCCGTATCCAGCCTGGTGACAAGATGGCAGGTCGTCACGGTAACAAGGGTGTAATTTCTAAGATCAACCCGATCGAAGATATGCCTTACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCCGCTGGGCGTACCGTCTCGTATGAACATCGGTCAGATCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGTATCGGCGACAAGATCAACGCCATGCTGAAACAGCAGCAAGAAGTCGCGAAACTGCGCGAATTCATCCAGCGTGCGTACGATCTGGGCGCTGACGTTCGTCAGAAAGTTGACCTGAGTACCTTCAGCGATGAAGAAGTTATGCGTCTGGCTGAAAAC > NC_000913/4184327‑4184769
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| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
ACGAACTGAAACACGAGTTCGAGAAGAAACTCGAAGCGAAACGCCGCAAAATCACCCAGGGCGACGATCTGGCACCGGGCGTGCTGAAGATTGTTAAGGTATATCTGGCGGTTAAACGCCGTATCCAGCCTGGTGACAAGATGGCAGGTCGTCACGGTAACAAGGGTGTAATTTCTAAGATCAACCCGATCGAAGATATGCCTTACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCCGCTGGGCGTACCGTCTCGTATGAACATCGGTCAGATCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGTATCGGCGACAAGATCAACGCCATGCTGAAACAGCAGCAAGAAGTCGCGAAACTGCGCGAATTCATCCAGCGTGCGTACGATCTGGGCGCTGACGTTCGTCAGAAAGTTGACCTGAGTACCTTCAGCGATGAAGAAGTTATGCGTCTGGCTGAAAACCTGCGCAAAGGTATGCCAATCGC > NC_000913/4184300‑4184792
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ACGAACGGAAACACGAGTTCGAGAAGAAACTCGAAGCGAAACGCCGCAAAATCACCCAGGGCGACGATCTGGCACCGGGCGTGCTGAAGATTGTTAAGGTATATCTGGCGGTTAAACGCCGTATCCAGCCTGGTGACAAGATGGCAGGTCGTCACGGTAACAAGGGTGTAATTTCTAAGATCAACCCGATCGAAGATATGCCTTACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGC < M01186:129:000000000‑A5M8V:1:1106:15725:8818/251‑1 (MQ=60)
TGAAACCCCAGTTCGGGAAGAAACTCTAAGCGAAACGTCGCAAAATCACCCGGGGCGCCGATCTGGCGCCGGGCGTGCTGAAGATTGCTAAGGTATATCTGGCGGTTAAACGCCGTATCCAGCCTGGTGACAAGATGGCAGGTCGTCACGGTAACAAGGGTGTAATTTCTAAGATCAACCCGATCGAAGATATGCCTTCCGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCG < M01186:129:000000000‑A5M8V:1:1104:14008:9982/251‑1 (MQ=60)
aagTCGAGAAAAAACTCGAAGGGAAACGCCGCAAAATCCCCCAGGGCGACGATCTGGCACCGGGCGTGCTGAAGATTGTTAAGGTATATCGGGCGGTTAAACGCCGTATCCAGCCTGGTGACAAGATGGCAGGTCGTCACGGTAACAAGGGTGTAATTTCTAAGATCAACCCGATCGAAGATATGCCTTACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTAT < M01186:129:000000000‑A5M8V:1:1105:9552:9025/247‑1 (MQ=60)
ACTCGAAGCGAAACGCCGAAAAATCCCCCAGGGCAACGACCTGGCACCGGGCGTGCTGAAGATTGTTAAGGTATATCTGGCGGTTAAACGCCGTATCCAGCCTGGTGACAAGATGGCAGGTCGGCACGGTAACAAGGGTGTAATTTCTAAGATCAACCCGATCGAAGATATGCCTTACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAGA < M01186:129:000000000‑A5M8V:1:1111:14949:21127/251‑1 (MQ=60)
ttggttccgtgggttcggaaatgtgtataagaggcagTTGTTAAGGTAAACCTGGCGGTTAAACGCCGTAATCAGCCTGGTGACAAGATGGCAGGTCGTCACGGTAACAAGGGTGTAATTTCTAAGATCAACCCGATCGAAGATATGCCTTACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAGATCCTCGAAACCCACCTGGGTATGGC < M01186:129:000000000‑A5M8V:1:1108:21573:6832/214‑1 (MQ=60)
ccccagggcgccgaactggccacgggcattcggaagtttggTAAGGTATATCGGGCGGTTAAACGCCGTATCCAGCCTGGTGACAAGGTGGCAGGTCGTCACGGTAACAAGGGTGTAATTTCTAAGATCAACCCGATCGAAGATAGGCCTTACGATGAAAACGGCACGCCGGTAGGCATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAGATCCTCGAAACCCACCTGGGTATGGC < M01186:129:000000000‑A5M8V:1:2104:3970:15811/210‑1 (MQ=60)
ACCCAGGGCGACGATCTGGCACCGGGCGTGCTGAAGATTGTTAAGGTATATCTGGCGGTTAAACGCCGTATCCAGCCTGGTGACAAGATGGCAGGTCGTCACGGTAACAAGGGTGTAATTTCTAAGATCAACCCGGTCGAAGATATGCCTTACGATGAAAACGGTAGGCCGGAAGACATCGAACTGAAACCGCTGGGGGTACCGTCTCGGATGAACAgcgggcgactcctcgaaacccacccggcattggg > M01186:129:000000000‑A5M8V:1:2113:10045:25827/1‑217 (MQ=60)
ATCTGGCACCGGGCGTGCTGAAGATTGTTAAGGTATATCTGGCGGTTAAACGCCGTATCCAGCCTGGTGACAAGATGGCAGGTCGTCACGGTAACAAGGGTGTAATTTCTAAGATCAACCCGATCGAAGATATGCCTTACGATGAAAACGGTAAGCCGGTAGACATCGTACTGAACCAGCTGGGCGAACCGTCTCGTATGAACACTGGTCAGATCCTCGAAACCCACCTGGGTATGGCTGCcgaaggtaag > M01186:129:000000000‑A5M8V:1:1104:25883:17493/1‑241 (MQ=60)
ATCTGGCACCGGGCGTGCTGAAGATTGTTAAGGTATATCTGGCGGTTAAACGCCGTATCCAGCCTGGTGACAAGATGGCAGGTCGTCACGGCAACAAGGGTGTAATTTCTAAGATCAACCCGATCGAAGATATGCCTTACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAGATCCTCGAAACCCACCTGGGTATGCGTGGGAAAGGTAT > M01186:129:000000000‑A5M8V:1:1103:23177:24167/1‑250 (MQ=60)
TGGCCCCGGGCGTTCTGAAGATTGTTAAAGTTATTCTGGCGGTTAAACGCCGTATGCAGCCTGGTGACAAGATGGCAGGCCGTCACGGTAACAAGGGTGGAATTTCTAAGATCAACCCGATCGAAGATATGCCTTACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAGATCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGTATCGGC < M01186:129:000000000‑A5M8V:1:2114:23818:18121/251‑1 (MQ=60)
GCACCGGGGGTGCTGAAGATTGTTAAGGTATATCGTGCGGTTAAACGTCGTATCCAGCCTGGTGACAAGATGGCAGGTCGTCACGGTAACAAGGGTGTAATTTCTAAGATCAACCCGATCGAAGATATGCCTTACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAGATCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGTATCGGCG < M01186:129:000000000‑A5M8V:1:1107:4793:19002/250‑1 (MQ=60)
GTGCTGAAGATTGTTAAGGTATATCTGGCGGTTAAACGCCGTATCCAGCCTGGTGACAAGATGGCAGGTCGTCACGGTAACAAGGGTGTAATTTCTAAGATCAACCCGATCGAAGATATGCCTTACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAAAAACGGTCAGATCCTCGAAACCCACCTGGGTATGTCTCCGAAAGGCATCGGCGACAAGATAAA > M01186:129:000000000‑A5M8V:1:1113:22004:16961/1‑251 (MQ=60)
tttgttcagggacATCTGGCGGTTAAACGCCGTATCCAGCCTGGTGCCAAGATGGCAGGGCGTCACGGTAACAAGGGTGTAATTTCTAAGATCAACCCGATCGAAGATATGCCTTACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAGATCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGTATCGGCGACAAGATCAACGCCATGC < M01186:129:000000000‑A5M8V:1:2111:7291:11757/237‑1 (MQ=60)
TTGTTAAGGTATATCTGGCGGTTAAACGCCGTATCCAGCCTGGTGACAAGATGGCAGGTCGTCACGGTAACAAGGGTGTAATTTCTAAGATCAACCCGATCGAAGATATGCCTTACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAGATCCTCGAAACCCACCTGGGTAGGGCTGCGAAAGGTACTGGCGACAAGAACAACCCCATGCTA > M01186:129:000000000‑A5M8V:1:2113:10938:11038/1‑251 (MQ=60)
TTGTTAAGGTATATCTGGCGGTTAAACGCCGTATCCAGACTGGTGACAAGATGGCAGGTCGTCACGGTAACAAGGGAGTAATTTCTAAGATCAACCCGATCGAAGATATGCCTTACGATGAAAACGGTACGCCGGTAGACATCGTACTGCACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAGttccccacaatcccccggggtatggttgcgaaacggatcggcgccaagatacaagccatgcta > M01186:129:000000000‑A5M8V:1:1108:15654:3784/1‑188 (MQ=60)
TGTTAAGGTATATCTGGCGGTTAAACGCCGTATCCAGCCTGGTGACAAGATGGCAGGTCGTCACGGTAACAAGGGTGTAATTTCTAAGATCAACCCGATCGAAGATATGCCTTACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGCCAGATCCTCGAAACCCACCTGGGCATGGCTGCGAAAGGTATCGGCGACAAGATCAAAGCCATGATGA > M01186:129:000000000‑A5M8V:1:1101:17167:25764/1‑251 (MQ=60)
AGGTATATCTGGCGGTTAAACGCCGTATCCAGCCTGGTGACAAGATGGCAGGTCGTCACGGTAACAAGGGTGTAATTTCTAAGATCAACCCGATCGAAGATATGCCTTACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAGGTCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGCATCGGCGACAAGCTCAACCCCATGCTGCAACAG > M01186:129:000000000‑A5M8V:1:1108:25519:16608/1‑251 (MQ=60)
ACGCCTTATCCAGCCTGGTGACAAGATGGCAGGTAGTCACGGTAACAAGGGTGTAATTTCTAAGATCAACCCGATCGAAGATATGCCTTACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAGATCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGTATCGGCGACAAGATCAACGCCATGCTGAAACAGCAGCAAGAAGTCGCGAAAC < M01186:129:000000000‑A5M8V:1:2106:20476:10386/251‑1 (MQ=60)
TGACAAGATGGCAGGGCGTCAACGTAACAAGGGTGTAAGTTCTAAGATCAACCCGATCGAAGATATGCCTTACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAGATCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGTATCGGCGACAAGATCAACGCCATGCTGAAACAGCAGCAAGAAGTCGCGAAACTGCGCGAATTCATCCAG < M01186:129:000000000‑A5M8V:1:2110:23750:25426/250‑1 (MQ=60)
CAAGATGGCAGGTCGTCACGGTAACAAGGGTGTAATTTCTAAGATCAACCCGATCGAAGATATGCCTTACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAGATCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGTATCGGCGACCAGATCAACGCCATGCTGAAACAGCAGCAAGAAGGCGCGAAACTGCGCGAATTCATCCAGCGTG > M01186:129:000000000‑A5M8V:1:2103:23948:20059/1‑251 (MQ=60)
TGGCAGGTCGGCACGGTAACAAGGGTGTAATTTCTAAGATCAACCCGATCGAAGATATGCCTTACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAGATCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGTATCGGCGACAAGATCAACGCCATGCTGAAACAGCAGCAAGAAGTCGCGAAACTGCGCGAATTCATCCAGCGTGCGTAC < M01186:129:000000000‑A5M8V:1:1104:17569:12068/251‑1 (MQ=60)
CGGTAACAAGGGTGTAATTTCTAAGATCAACCCGATCGAAGATATGCCTTACGATGAAAACGGTACGTCGGTAGACATCGCACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAGATCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGTATCGGCGACAAGATCAATGCCATGCTGAAACAGCAGCAAGAAGTCGCGAAACTGCtcgaaacattccaccgtgcttaagacctgggcgccg > M01186:129:000000000‑A5M8V:1:2114:25010:5865/1‑215 (MQ=60)
cgtactgaaccagctgggcgtaccgtctcgtatgaacatcggtcagatcctcggaacccacctggggGGTAGACATCCGGTTAACCTTGGAAAACCCCAAGGCCTTGGGGGGCCGGTTAACCCCGGTTCCTTCCGGTTAATTGGAAAACCAATTCCGGGGTTCCAAGGAATTCCCCTTCCGGAGAAAACCCCCCAACCCCTTGGGGGGTGATGGCTGCGAAAGGTATCGGCGACAAGATCAACGCCATGCTGAAACAGCAGCAAGAAGTCGCGAAACTGCGCGAATTCATCCAGCG > M01186:129:000000000‑A5M8V:1:2104:21877:18495/68‑229 (MQ=60)
TCTAAGATCAACCCGATCGAAGATATGCCTTACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAGATCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGTATCGGCGACAAGATCAACGCCATGCTGAAACAGCAGCAAGAAGTCGCGAAACTGCGCGAATTCATCCAGCGTCCGTACGATCTGGGCGCTGACGTTCGTCAGGAAGTTGA > M01186:129:000000000‑A5M8V:1:2106:10441:20281/1‑251 (MQ=60)
GATCAACCCGATCGAAGATATGCCTTACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAGATCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGTATCGGCGACAAGATCAACGCCATGCTGAAACAGCAGCAAGAAGTCGCGAAACTGCGCGAATTCATCCAGCGTGCGTACGATCTGGGCGCTGACGTTCGTCAGAAAGTTGACCTGG > M01186:129:000000000‑A5M8V:1:2103:14346:14877/1‑251 (MQ=60)
AACCCGATCGAAGATATGCCTTACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAGATCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGTATCGGCGACAAGATCAACGCCATGCTGAAACAGCAGCAAGAAGTCGCGAAACTGCGCGAATTCATCCAGCGTGCGTACGATCTGGGCGCTGACGTTCGTCAGAAAGTTGACCTGAGTAC < M01186:129:000000000‑A5M8V:1:2105:7516:14573/251‑1 (MQ=60)
GATCGAAGATATGCCTTACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAGATCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGTATCGGCGACAAGATCAACGCCATGCTGAAACAGCAGCAAGAAGTCGCGAAACTGCGCGAATTCATCCAGCGTGCGTACGATCTGGGCG < M01186:129:000000000‑A5M8V:1:1103:8138:18765/215‑1 (MQ=60)
ATCGAAGATATGCCTTACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAGATCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGTATCGGCGACAAGATCAACGCCATGCTGAAACAGCAGCAAGAAGTCGCGAAACTGCGCGAATTCATCCAGCGTGCGTACGATCTGGGCGCTGACGTTCGTCAGAAAGTTGACCTGAGTACCTTCAG > M01186:129:000000000‑A5M8V:1:2112:14321:5322/1‑251 (MQ=60)
GATATGCCTTACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAGATCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGTATCGGCGACAAGATCAACGCCATGCTGAAACAGCAGCACGAAGTCGCGAAACTACGCGAATTCCTCCAGCGTGCTTCCTATCTGGGAGCTGACGTTCGTCAAAAATTTGACCTGCGTACCTTCAGCGATGA > M01186:129:000000000‑A5M8V:1:1113:7353:14220/1‑251 (MQ=60)
TATGCCTTCAGATGAAAACGGTACGCCGGTAGACATCGAACTGAACCAGCTGGGCGTAGCGTCTCGTATGAACATCGGTCAGATCCTCGAAACCCGCCTGGGTAGGGCTGCGAAAGGTATCGGCGACAAGATCAACGCCATGCTGAAACAGCAGCAAGAAGTCGCGAAACTGCGCGAATTCATCCAGCGTGCGTACGATCTGGGCGCTGACGTTCGTCAGAAAGTTGACCTGAGTACCTTCAGCGATGAAG < M01186:129:000000000‑A5M8V:1:1108:11435:15256/251‑1 (MQ=60)
GCCTTACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAGATCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGTATCGGCGACAAGATCAACGCCATGCTGAAACAGCAGCAAGAAGTCGCGAAACTGCGCGAATTCATCCAGCGGGCGTACGATCTGGGCGCTGACGTTCGCCAGAAAGTTGCCCTGAGTACCTTCACGGATGAAGAAG > M01186:129:000000000‑A5M8V:1:1106:28131:18247/1‑251 (MQ=60)
CGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAGATCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGTATCGGCGACAAGATCAACGCCATGCTGAAACAGCAGCAAGAAGTCGCGAAACTGCGCGAATTAATCCAGCGTGCGTACGATCTGGGCGCTGCCGTTCGTCAGAAAGTTGACCTGAGAACCTTAAGCGATGAAGAGGTTATGCTCCTGGCGGAAAA > M01186:129:000000000‑A5M8V:1:2114:12532:13823/1‑250 (MQ=60)
CCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAGATCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGGATCGGCGACAAGATCAACGCCATGCTGAAACAGCAGCAAGAAGTCGCGAAACTGCGCGAATTCATCCAGCGTGCGTACGATCTGGGCGCTGACGTTCGTCAGAAAGTTGACCTGAGTACCTTCAGCGATGAAGAAGTTAGGCGTCTGGCTctgact > M01186:129:000000000‑A5M8V:1:2103:7010:21961/1‑243 (MQ=60)
GGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCCCGTATGAACATCGGTCAGATCCTCGACACCGACCTGGGTATGGCTGCGAAAGGTATCGGCGACAAGATCAACGCCATGCTGCAACAGCAGCAAGA > M01186:129:000000000‑A5M8V:1:1104:29409:12404/1‑132 (MQ=60)
ACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAGATCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGTATCGGCGACAAGATCAACGCCATGCTGAAACAGCAGCAAGAAGTCGCGAAACTGCGCGAATTCATCCAGCGTGCGTACGATCTGGGCGCTGACGTTCGTCAGAAAGTTGACCTGAGTACCTCAAGCGATGAAGAAGTTAGGCGTCTGGCTGCAAACCTTCGCAAA > M01186:129:000000000‑A5M8V:1:2110:21908:23362/1‑251 (MQ=60)
ACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAGATCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGTATCGGCGACAAGATCAACGCCATGCTGAAACAGCAGCAAGAAGTCGCGAAACTGCGCGAATTCATCCAGCGGGCGTACGATCTGGGCGCTGACGTTCGTCAGAAAGTTGACCTGAGTACCTTCAGCGATGCAGAAGTTATGCGTCTGGCGGAAAACCTGCGCAAA > M01186:129:000000000‑A5M8V:1:2114:9866:13876/1‑251 (MQ=60)
ccacTACTGAACCCGGTGGGCCTACCGTCTCGTTAGAACATCGGTCAGATCCTCGAACACCACCTGGGTATGGCTGCGAAAGGTATCGGCGACAAGATCAACGCCATGCTGAAACAGCAGCAAGAAGTCGCGAAACTGCGCGAATTCATCCAGCGTGCGTACGATCTGGGCGCTGACGTTCGTCAGAAAGTTGACCTGAGTACCTTCAGCGATGAAGAAGTTATGCGTCTGGCTGAAACCCTGCGCAAAGG < M01186:129:000000000‑A5M8V:1:2109:8296:9843/247‑1 (MQ=60)
ATCGTACTGAACCATCTGGGCGGACCGTCTCGTATGAACATCGGTCAGATCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGTATCGGCGACAAGATCAACGCCATGCTGAAACAGCAGCAAGAAGTCGCGAAACTGCGCGAATTCATCCAGCGTGCGTACGATCTGGGCGCTGACGTTCGTCAGAAAGTTGACCTGAGTACCTTCAGCGATGAAGAAGTTATGCGTCTGGCTGAAAACCTGCGCAAAGG < M01186:129:000000000‑A5M8V:1:1105:20287:28010/251‑1 (MQ=60)
ATCGTACAGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAGAGCATCGAAACCCACCTGGGTATGGCTGCGAAAGGTATCGGCGAAAAGATCAACGCCATGCTGAAACAGCAGCAAGAAGTCGCGAAAATGCGCGAATTCATCCAGCGTGCGTACGATCTGGGCGCTGACGTTCGTCAGAAAGTTGACCTGATTACCTTCAGCGATGAAGAAGTTATGCGTCTGGCTGAAAACCTGCGCAAAGA < M01186:129:000000000‑A5M8V:1:1110:20151:10717/251‑1 (MQ=60)
GTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAGATCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGTATCGGCGACAAGATCAACGCCATGCTGAAACAGCAGCAAGAAGTCGCGAAACTGCGCGAATTCATCCAGCGTGCGTACGATCTGGGCGCTGACGTTCGTCCGAAAGTTGACCTGAGA > M01186:129:000000000‑A5M8V:1:1103:7610:16091/1‑198 (MQ=60)
GTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAGATCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGTATCGGCGACAAGATCAACGCCATGCTGAAACAGCAGCAAGAAGTCGCGAAACTGCGCGAATTCATCCAGCGTGCGTACGATCTGGGCGCTGACGTTCGTCAGAAAGTTGACCTGAGTACCTTCAGCGATGAAGAAGTTATGCGGCTGGCTGAAAACCTGCGCAAAGGTAT > M01186:129:000000000‑A5M8V:1:2112:19493:4437/1‑251 (MQ=60)
GTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAGATCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGTATCGGCGACAAGATCAACGCCATGCTGAAACAGCAGCAAGAAGTCGCGAAACTGCGCGAATTCATCCAGCGTGCGGACGATCTGGGGGCTGACGTTCGTCAGAAAGTTGACCGGAGTACCTTCAGCGTGGAAGAAGTTGTGTGTCTGGCTGAAACCCTGCCCAAAGGTAG > M01186:129:000000000‑A5M8V:1:2113:18920:19700/1‑251 (MQ=60)
GTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAGATCCTCGAAACCCACCTGGGGATGGCTGCGAAAGGTATCGGAGACAAGATCAACGCCATGCTGAAACAGCAGCAAGAAGTCGCGAAACTGCGCGAATTCATCCAGCGTGCGGACGATCTGGGCGCTGACGTTCGTCAGAAAGTTGACCTGAGTACCTTACGCGATGAAAAGGTTTTGCGTCTGGCTGAAAACCTGCGCAAcggagt > M01186:129:000000000‑A5M8V:1:2111:23877:25867/1‑245 (MQ=60)
CTGAACCAGCTGGGCGTACCGTTTCGGATGAACATCGGTCAGATCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGTATCGGCGACAAGGTCAACGCCATGCTGAAACAGCAGCAAGAAGTCGCGAAACTGCGCGAATTCATCCAGCGTGCGTACGATCTGGGCGCTGACGTTCGTCAGAAAGTTGACCTGAGTACCTTCAGCGATGAAGAAGTTATGCGTCTGGCTGAAAACCTGCGCAAAGGTATGCC < M01186:129:000000000‑A5M8V:1:1109:9277:9020/251‑1 (MQ=60)
CAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAGATCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGTATCGGCGACAAGATCAACGCCATGCTGAAACAGCAGCAAGAAGTCGCGAAACTGCGCGAATTCATCCAGCGTGCGTACGATCTGGGCGCTGACGTTCGTCAGAAAGTTGACCTGAGTACCTTCAGCGATGAAGAAGTTATGCGTCTGGCTGAAAACCTGCGCAAAGGAATGCCAATCGA > M01186:129:000000000‑A5M8V:1:1102:28457:14706/1‑251 (MQ=60)
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ACGAACTGAAACACGAGTTCGAGAAGAAACTCGAAGCGAAACGCCGCAAAATCACCCAGGGCGACGATCTGGCACCGGGCGTGCTGAAGATTGTTAAGGTATATCTGGCGGTTAAACGCCGTATCCAGCCTGGTGACAAGATGGCAGGTCGTCACGGTAACAAGGGTGTAATTTCTAAGATCAACCCGATCGAAGATATGCCTTACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCCGCTGGGCGTACCGTCTCGTATGAACATCGGTCAGATCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGTATCGGCGACAAGATCAACGCCATGCTGAAACAGCAGCAAGAAGTCGCGAAACTGCGCGAATTCATCCAGCGTGCGTACGATCTGGGCGCTGACGTTCGTCAGAAAGTTGACCTGAGTACCTTCAGCGATGAAGAAGTTATGCGTCTGGCTGAAAACCTGCGCAAAGGTATGCCAATCGC > NC_000913/4184300‑4184792
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
