Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A4 F9 I0 R1	177	96.4	2178490	87.4%	1904000	226.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	freq	annotation	gene	description
RA	NC_000913	1,837,435	T→G	22.2%	V75G (GTG→GGG)	ynjC →	putative ABC transporter permease

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	1,837,435	0	T	G	22.2%	120.5 / 3.8	81	V75G (GTG→GGG)	ynjC	putative ABC transporter permease
Reads supporting (aligned to +/- strand): ref base T (17/42); new base G (19/3); total (36/45)
Fisher's exact test for biased strand distribution p-value = 3.59e-06
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

TGCGCTGGAACAAGAATGGCTACACCGTTACGGTACGCATTAATCTTTTTGCTGTGGGCGATGGTGGCGGTGATTTATGCACCGCTGATCCCGGCAGCTCT‑CACGCTGATATCGCCTGCTTTGTCGTTGACACACTGGCAGGCGTTATTTGCCGATCCACAGTTACCGCAGGCATTACTGGCAACGCTGGTGTCGACAACCATCGCGGC‑GGTCGGGGCATTGTTGATTGCCCTGCTGGTGATTGTGGCGC‑TGTGGCCTGGGCCGAAA‑TGGCAGCG‑TATGTGC‑GCCCGTCTGCCGTGGCTGCTCGCCA‑TTCCCCATGTGGC‑TTTTGCCACCAGCGCCCTTCTGCTCTTTGCTGACGGAGGGCTGCTTTATGACTATTTCCCGTATTTCACTCCGCCAATGGACCGATTTGGCATCGGTCTGGGCCTCACCCTTGCAGTGAAAGAAAGCGCATTTCTGCTGTGGATCTTAGCA  >  NC_000913/1837197‑1837667

tGCGCTGGAACAAGAATGGCTATACCGTTACGGTACGCATTAATCTTTTTGCTGTGGGCGATGGTGGCGGTGATTTATGCACCGCTGATCCCGGCAGCTCT‑CACGCTGATATCGCCTGCTTTGTCGTTGACACACTGGCAGGCGTTATTTGCCGATCCACAGTTACCGCAGGCATTACTGGCAACGCTGGTGTCGACAACCATCGCGGC‑GGTCGGGGCATTGTTGATTGCCCTGCTGGt                                                                                                                                                                                                                                                <  1:606958/239‑1 (MQ=255)

       gAAAAAGAATGGCTACCCCTTTCCGGTACGCATTAATCTTTTTGCTGTGGGCGATGGTGGCGGTTATTTAGGCACCGCTGATCCCGGCAGCTCT‑CACGCTGATCTCGCCTGCTTTGTCGTTGACACACTGGCAGGCGTTATTTGCCGATCCACAGTTACCGCAGGCATTACTGGCAACGCTGGTGTCGACAACCATCGCGGC‑GGTCGGGGCATTGTTGATTGCCCTGCTGGTGATtgtg                                                                                                                                                                                                                                         <  2:360226/239‑1 (MQ=255)

       aaaCAAGGATGGCTTAGGCGTTACTGTTCGCATTGCGTGTTTTGCTGTTGGCGGGGGGGGCGGTTATTTATGCCCCGCTGATCCCTGTAGCTGC‑ACCGCGTATGTCGCCTGGTTTGGCGTTGACACACTGGAAGGCGTGATTTGACGATGCACAGTTACCGCAGGCATTACTGTCAACGCTGGTGTCGACAACCATCGCGGC‑GGTCGGGGCATTGTTGATTGCCCTGCTGGTGATtgtg                                                                                                                                                                                                                                         <  2:1244/238‑1 (MQ=255)

            aGAATGGCTACACCGTTACGGTACGCATTAATCTTTTTGCTGTGGGCGATGGTGGCGGTGATTTATGCACCGCTGATCCCGGCAGCTCT‑CACGCTGATATCGCCTGCTTTGTCGTTGACACACTGGCAGGCGTTATTTTCCGATCCACAGTTACCGCAGGCATTACTGGCAACGCTGGGGTCGACAACCATCGCGGC‑GGGCGGGGCCTTGTTGGTTTGCCCGCTGGGGATTTTGgggcg                                                                                                                                                                                                                                    >  1:466880/1‑238 (MQ=255)

                       acCGTTACGGTACGCATTAATCTTTTTGCTGTGGGCGATGGTGGCGGTGATTTATGCACCGCTGATCCCGGCAGCTCT‑CACGCTGATATCGCCTGCTTTGTCGTTGACACACTGGCAGGCGTTATTTGCCGATCCACAGTTACCGCAGGCCTTACTGGCAACGCTGGGGTCGGCAACCATCGCGGC‑GGGCCGGGGATTTTTTATTTGCCCGCTGGGGGTTGTTGGGC‑TGTTGCCCggg                                                                                                                                                                                                                         >  1:891452/1‑238 (MQ=255)

                               gtttcGCATTTTTCTTTTTGGTTGGGGCGATGGTGGCGGTGATTTATGCCCCGCTGATCCCGGCAGCTCT‑CACGCTGATATCGCCTGCTTTGTCGTTGACACACTGGCAGGCGTTATTTGCCGATCCACAGTTACCGCAGGCATTACTGGCAACGCTGGTGTCGACAACCATCGCGGC‑GGTCGGGGCATTGTTGATTGCCCTGCTGGTGATTGTGGCGC‑TGTGGCCTGGGCCGAAA‑Tgg                                                                                                                                                                                                               <  2:336399/235‑1 (MQ=255)

                                   cGCATTAATCTTTTTGCTGTGGGCGATGGTGGCGGTGATTTATGCACCGCTGATCCCGGCCGCTCT‑CACGCTGATATCCCCTGCTTTGTCGTTGACACACTGGCAGGCGTTATTTGCCCATCCCCCCTTACCCCAGGCTTTACTGGCAACCCTGGTGTCTACAACCCTCGCCGC‑CGCCGGGGGCTTGTTGGTTGCCCCCCTGGGTGTGTTGTTGC‑CGTGGCCCTGGCCGAAA‑Tgtggcc                                                                                                                                                                                                           >  2:50795/1‑234 (MQ=255)

                                   cGCATTAATCTTTTTGCTGTGGGCGATGGTGGCGGTGATTTATGCACCGCTGATCCCGGCAGCTCT‑CACGCTGATATCGCCTGCTTTGTCGTTGACACACTGGCAGGCGTTATTTTCCGCTCCCCCGTTTCCCCAGGCCTTACTGGCCACCCTGGGGTCGCCAACCCTCCCGGC‑GGGCCGGGGACTGTTTTTTGCCCCGCTGGGGGTTTGTGCGC‑TGGGGGCGGGGGCGAAA‑Agggggc                                                                                                                                                                                                           >  2:174474/1‑235 (MQ=255)

                                   cGCATTAATCTTTTTGCTGTGGGCGATGGTGGCGGTGATTTATGCACCGCTGATCCCGGCAGCTCT‑CACGCTGATATCGCCTGCTTTGTCGTTGACACACTGGCAGGCGTTATTTGCCGATCCACAGTTACCGCAGGCATTACTGGCAACGCTGGTGTCGCCAACCATCGCGGC‑GGTCGGGGCATTGTTGATTGCCCTGCTGGGGATTTTGGCGC‑TGTGGCCCGTGCCGGAA‑TGGCAgg                                                                                                                                                                                                           >  1:592588/1‑238 (MQ=255)

                                   cGCATTAATCTTTTTGCTGTGGGCGATGGTGGCGGTGATTTATGCACCGCTGATCCCGGCAGCTCT‑CACGCTGATATCGCCTGCTTTGTCGTTGACACACTGGCAGGCGTTATTTGCCGATCCACAGTTACCGCAGGCATTACTGGCAACGCTGGTGTCGACAACCATCCCGGC‑CGGCGGGGCCTTGTTGATTTCCCTCCTGGGTGTTGTGGCGC‑TGTGGCCCGGGCCGCAA‑TGTCaac                                                                                                                                                                                                           >  1:171551/1‑237 (MQ=255)

                                     cATTAATCTTTTTGCTGTGGGCGATGGTGGCGGTGATTTATGCACCGCTGATCCCGGCAGCTCT‑CACGCTGATATCGCCTGCTTTGTCGTTGACACCCTGGCAGGCGTTATTTGCCGATCCCCAGTTACCCCAGGCATTACTGGCAACGCTGGTGTCGGCAACCATCGCGGC‑GGGCGGGGGGTTGTTGTTTTCCCCCCTGGGGTGTGTGGGGCGCGGGGCCGGGGCGGAAA‑ggggcggg                                                                                                                                                                                                          >  2:934592/1‑234 (MQ=255)

                                     cATTAATCTTTTTGCTGTGGGCGATGGTGGCGGTGATTTATGCACCGCTGATCCCGGCAGCTCT‑CACGCTGATATCGCCTGCTTTGTCGTTGACACACTGGCAGGCGTTATTTGCCGATCCACAGGTACCGCAGGCATTACTGGCCACGCTCGGGTCGACCACCATCGCGGC‑GGGCGGGGCCATGTTTGTTGGCCTGCCGGGGATTCTGTGCC‑CGTGGCCTGGGCCCGAA‑AGGCAGCG‑t                                                                                                                                                                                                        >  2:180309/1‑239 (MQ=255)

                                                           gATGGTGGCGGTGATTTATGCCCCGCTGATCCCGGCAGCTCT‑CACGTTGATATCGCCTGCTTTGTCGTTGACACACTGGCAGGCGTTATTTGCCGATCCACAGTTACCGCAGGCATTACTGGCAACGCTGGTGTCGACAACCATCGCGGC‑GGTCGGGGCATTGTTGATTGCCCTGCTGGTGATTGTGGCGC‑TGTGGCCTGGGCCGAAA‑TGGCAGCG‑TATGTGC‑GCCCGTCTGCCGTgg                                                                                                                                                                                  <  1:1011425/238‑1 (MQ=255)

                                                              tgttgcgcgtttttATTCGCCGCTGATCCCGGCCG‑TCTCCCCTCTGATATCCCCTTCTTTGGCGTTGCCCTACTGGCAGGCGTTATTTGCCGACCCCCAGTTACCGGAGGCATTACTGGCCACGCTGGTTCCGACAACCATCGCGGC‑GGTCGGGGCATTGTTTATTGCCCTGCTGGTGATTGTGGCGC‑TGTGGCCTGGGCCGAAA‑TGGCAGCG‑TATGTGC‑GCCCGTCTGCCGTGgctgc                                                                                                                                                                              <  2:208889/228‑1 (MQ=255)

                                                                                  cGCTGATCCCGGCAGCTCT‑CACGCTGATATCGCCTGCTTTGTCGTTGACACACTGGCAGGCGTTATTTGCCGATCCACAGTTACCGCAGGCATTACTGGCAACGCTGGTGTCGACAACCATCGCGGC‑GGTCGGGGCCTTGTTTATTTCCCCTCTGGGGATTTTGGGGG‑CGTGGCCTGGGCCGAAA‑TGGCGACG‑TTTGTGC‑GCCCGCCGCCCCGGGCTCCTCCCCC‑TTCCCCacggggtg                                                                                                                                                         >  2:1050022/1‑232 (MQ=255)

                                                                                  cGCTGATCCCGGCAGCTCT‑CACGCTGATATCGCCTGCTTTGTCGTTGACACACTGGCAGGCGTTATTTGCCGATCCACAGTTACCGCAGGCATTACTGGCAACGCTGGTGTCGACAACCATCGCGGC‑GGTCGGGGCATTGTTGATTGCCCTGCTGGTGATTGTGGCGC‑TGTGGCCTGGGCCGAAA‑TGGCAGCG‑TATGTGC‑GCCCGTCTGCCGTGGCTGCTCGCCA‑TTCCCCCTGTGGC‑t                                                                                                                                                        >  1:699863/1‑239 (MQ=255)

                                                                                  cGCTGATCCCGGCAGCTCT‑CACGCTGATATCGCCTGCTTTGTCGTTGACACACTGGCAGGCGTTATTTGCCGATCCACAGTTACCGCAGGCATTACTGGCAACGCTGGTGTCGACAACCATCGCGGC‑GGTCGGGGCATTGTTGATTGCCCTGCTGGTGATTGTGGCGC‑TGTGGCCTGGGCCGAAA‑TGGCACCG‑TATGTGC‑GCCCGTCTGCCGTGGCTGTTCGCCA‑TTCCCCaatgggct                                                                                                                                                         >  1:838423/1‑232 (MQ=255)

                                                                                  cGCTGATCCCGGCAGCTCT‑CACGCTGATATCGCCTGCTTTGTCGTTGACACACTGGCAGGCGTTATTTGCCGATCCACAGTTACCGCAGGCATTACTGGCAACGCTGGTGTCGACAACCATCGCGGC‑GGTCGGGGCATTGTTGATTGCCCTGCTGGGGATTTTGGCGC‑GGTGGCCCGGGCCGGAA‑ATGCAGCGCTTGGTGC‑CCCCG‑CTGCCCGGGCCGCCCGCCC‑TTccccccgggggt                                                                                                                                                         >  2:1004540/1‑231 (MQ=255)

                                                                                  cGCTGATCCCGGCAGCTCT‑CACGCTGATATCGCCTGCTTTGTCGTTGACACACTGGCAGGCGTTATTTGCCGATCCACAGTTACCGCAGGCATTACTGGCAACGCTGGTGTCGACAACCATCGCGGC‑GGTCCGGGCCTTTTTGTTTGCCCTTGTGGGGAATGTGGCGC‑GGTGGCCTGGGGCGGAA‑TGGGAGGC‑TATTTGG‑GCCCCTCTGCCCGGGGTGCTCGGCACTTCCCCATggggt                                                                                                                                                          >  2:241125/1‑238 (MQ=255)

                                                                                    cTGATCCCGGCAGCTCT‑CACGCTGATATCGCCTGCTTTGTCGTTGACACACTGGCAGGCGTTATTTGCCGATCCACAGTTACCGCAGGCATTACTGGCAACGCTGGTGTCGCCAACCATCGCGGC‑GGTCGGGGCCTTGTTGATTGCCCTCCTGGGGATTTTGGCGC‑TGTGGCCCTGGCCGAAAGTGACACGG‑TAT‑TGG‑CCCCCCCCGCCCGGGCGGCCCCCCA‑TTTCCCACGTGGC‑ttt                                                                                                                                                      >  2:787401/1‑239 (MQ=255)

                                                                                    cTGATCCCGGCAGCTCT‑CACGCTGATATCGCCTGCTTTGTCGTTGACACACTGGCAGGCGTTATTTGCCGATCCACAGTTACCGCAGGCATTACTGGCAACGCTGGTGTCGACAACCATCGCGGC‑GGTCGGGGCATTTGTGATTGCCCTGCTGGGGATTTTGGCGC‑CGTGGGCTGGGCCGGAA‑TGGCAGCC‑GCTGTGG‑GCCCGGCTTCCGTGGCGTCTCGGCA‑CTcccccctgggcttt                                                                                                                                                       >  2:1047270/1‑229 (MQ=255)

                                                                                    cTGATCCCGGCAGCTCT‑CACGCTGATATCGCCTGCTTTGTCGTTGACACACTGGCAGGCGTTATTTGCCGATCCACAGTTACCGCAGGCATTACTGGCAACGCTGGTGTCGACAACCATCGCGGC‑GGTCGGGGCATTGTTGATTGCCCTGCTGGTGATTTTGGCGC‑TGTGGCCCTGGCCGAAA‑TGGCAGCG‑TATGTGC‑GCCCGTCTGCCGGGGCGGCTCGCCA‑TTcccccttggggttt                                                                                                                                                       >  1:896568/1‑229 (MQ=255)

                                                                                    cTGATCCCGGCAGCTCT‑CACGCTGATATCGCCTGCTTTGTCGTTGACACACTGGCAGGCGTTATTTGCCGATCCACAGTTACCGCAGGCATTACTGGCAACGCTGGTGTCGACAACCATCGCGGC‑GGTCGGGGCATTGTTGATTGCCCTGCTGGGGATTTGTGCGC‑TGTGGCCTGGGCCGAAA‑TGGCCGCG‑TATGTGC‑GCCCGCCTGCCGTGGCGGCCCGCCC‑TTCCCCATTTGGC‑ctt                                                                                                                                                      >  1:682752/1‑239 (MQ=255)

                                                                                       aTCCCGGCAGCTCT‑CACGCTGATATCGCCTGCTTTGTCGTTGACACACTGGCAGGCGTTATTTGCCGATCCACAGTTACCGCAGGCATTACTGGCAACGCTGGTGTCGACAACCATCGCGGC‑GGTCGGGGCATTGTTGATTGCCCTGCTGGTGATTGTGGCGC‑TGTGGCCTGGGCCGAAA‑TGGCAGCG‑TATGTGC‑GCCCGCCTTCCGGGGCTGCCCGCCC‑TTCCCCATGTGGC‑ttttt                                                                                                                                                    >  1:232333/1‑237 (MQ=255)

                                                                                             gcacttct‑cCCTCTGATTTCGCCGTTTTTGGCGTTGACCCCCTGGCAGGCGTTTTTTGCCGATCCACAGTTACCGCAGGCATTTCTGGCAACGCTGGTGTCGACAACCATCGGGGC‑GGTCGGGGCATTGTTGATTGCCCTGCTGGTGATTGTGGCGC‑TGTGGCCTGGGCCGAAA‑TGGCAGCG‑TATGTGC‑GCCCGTCTGCCGTGGCTGCTCGCCA‑TTCCCCATGTGGC‑TTTTGCCACCAg                                                                                                                                             <  2:491412/234‑1 (MQ=255)

                                                                                                gCTCC‑CACGCTGATTTCGCCTGCTTTGTCGTTGACCCACTGGCAGGCGTTATTTGCCGATCCACAGTTACCGCAGGCATTACTGGCAACGCTGGTGTCGACAACCATCGCGGC‑GGTCGGGGCATTGTTGATTGCCCTGCTGGTGATTGTGGCGC‑TGTGGCCTGGGCCGAAA‑TGGCAGCG‑TATGTGC‑GCCCGTCTGCCGTGGCTGCTCGCCA‑TTCCCCATGTGGC‑TTTTGCCACCAgcg                                                                                                                                           <  1:241125/238‑1 (MQ=255)

                                                                                                 ctct‑CACGCTGATATCGCCTGCTTTGTCGTTGACACACTGGCAGGCGTTATTTGCCGATCCACAGTTACCGCAGGCATTACTGGCAACGCTGGTGTCGACAACCATCGCGGC‑GGTCGGGGCATTGTTGATTGCCCTGCTGGGGATTGTGGCGC‑GGTGGCCTGGGCCGAAA‑TGGCAGCG‑TATGTGC‑GCCCGTCTGCCGTGGCTGCTCGCCA‑TTCCCCATGTGGC‑TTTTTCCACACgcgc                                                                                                                                          >  1:256576/1‑238 (MQ=255)

                                                                                                            gATATCGCCTGCTTTGTCGTTGACACACTGGCAGGCGTTATTTGCCGATCCACAGTTACCGCAGGCATTACTGGCAACGCTGGTGTCGACAACCATCGCGGC‑GGTCGGGGCATTGTTGATTTCCCTGCTGGGGATTGTGGCGC‑TGGGGCCTGGGCCGGAA‑TGGCAGCG‑GTTTGGG‑GCCCGCCTCCCGGGGGTGGCCGCCC‑TTTCCCACGTGGCGTTTTGCCCCCACCCCCCtttggcct                                                                                                                                >  2:888521/1‑233 (MQ=255)

                                                                                                            gATATCGCCTGCTTTGTCGTTGACACACTGGCAGGCGTTATTTGCCGATCCACAGTTACCGCAGGCATTACTGGCAACGCTGGTGTCGACAACCATCGCGGC‑GGTCGGGGCATTGTTGATTGCCCTGCTGGTGATTGTGGCGC‑TGTGGCCTGGGCCGCAA‑TGGCAGCG‑TATGTGC‑GCCCGGCTGCCGTGGCTGGTCGCCA‑TTCCCCATTTGGC‑TTTTTCCACCAGGCCCCTTCTGccct                                                                                                                               >  1:953722/1‑239 (MQ=255)

                                                                                                             atatCGCCTGCTTTGTCGTTGACACACTGGCAGGCGTTATTTGCCGATCCACAGTTACCGCAGGCATTACTGGCAACGCTGGTGTCGACAACCATCGCGGC‑GGTCGGGGCCTTGTTGGTTGCCCTGCTGGTGATTCGGGCGC‑CGGGGCCCGGGCCGGAA‑AGGCAGCG‑CATCTGCGGCCCCTCCGCGGGGGCCGCCGCCCA‑TTCCCCCT‑TAGC‑TTTTTGCACCCACGcccattcgccctt                                                                                                                              >  2:637208/1‑229 (MQ=255)

                                                                                                                 cGCCTGCTTTGTCGTTGACACACTGGCAGGCGTTATTTGCCGATCCACAGTTACCGCAGGCATTACTGGCAACGCTGGTGTCGACAACCATCGCGGC‑GGTCGGGGCATTGTTGATTGCCCTGCTGGTGATTGTGGCGC‑TGTGGCCTGGGCCGAAA‑TGGCAGCG‑TATGTGG‑GCCCGTCTGCCGGGGCTGCTCGCCA‑TTCCCCCTGGGGC‑CTTTGCCACCAGCGCCCTTTTCCTCTTTg                                                                                                                            >  1:469966/1‑237 (MQ=255)

                                                                                                                       cTTTGTCGTTGACACACTGGCAGGCGTTATTTGCCGATCCACAGTTACCGCAGGCATTACTGGCAACGCTGGTGTCGACAACCATCGCGGC‑GGTCGGGGCATTGTTGATTGCCCTGCTGGGGGTTGTGGCGC‑TGTGGCCTGGGCCGAAA‑TGGGAGCG‑GATGTGG‑GCCCGTCTGCCGTGGGTGCTATCCC‑TTCCCCCTGTGGC‑TTTTGCCACCCGCGCCCCTCTCGCCTTTGGCGACggg                                                                                                                    >  2:1054268/1‑238 (MQ=255)

                                                                                                                         ttGTCGGTGACACCCTGGGAGGTGTTTTTTGCCGATCCACAGTGACCGCAGGCATTACTGGCAACGCTGGTGTCGACAACCAGCGCGGC‑GGTCGGGGCATTGTTGATTGCCCTGCTGGTGATTGTGGCGC‑TGTGGCCTGGGCCGAAA‑TGGCAGCG‑TATGTGC‑GCCCGTCTGCCGTGGCTGCTCGCCA‑TTCCCCATGTGGC‑TTTTGCCACCAGCGCCCTTCTGCTCTTTGCTGACGGAgg                                                                                                                  <  2:866021/239‑1 (MQ=255)

                                                                                                                           gtggTTGACCCTCTGGGCGGCGTTAGTTGCCTGTCCCCAGTTACCCCAGGCATTTCTGGCAACGCGGGGGTCGACAACCATCGCGGC‑GGTCGGGGCATTGTTTATTGCCCTGCTGGTGATTGTGGCGC‑TGTGGCCTGGGCCGAAA‑TGGCAGCG‑TATGTGC‑GCCCGTCTGCCGTGGCTGCTCGCCA‑TTCCCCATGTGGC‑TTTTGCCACCAGCGCCCTTCTGCTCTTTGCTGACGGAGGgc                                                                                                                <  2:78801/236‑1 (MQ=255)

                                                                                                                           gTCGTTGACACACTGGCAGGCGTTATTTGCCGATCCACAGTTACCGCAGGCATTACTGGCAACGCTGGTGTCGACAACCATCGCGGC‑GGTCGGGGCATTGTTGATTGCCCTGCTGGTGATTGTGGCGC‑TGTGGCCTGGGCCGAAA‑TGGCAGCG‑TATGTGC‑GCCCGTCTGCCGTGGCTGCTCGCCA‑TTCCCCATGTGGC‑TTTTGCCACCAGCGCCCTTCTGCTCTTTGCTGACGGAGGgc                                                                                                                <  2:699863/239‑1 (MQ=255)

                                                                                                                            tCGTTGACACACTGGCAGGCGTTATTTGCCGATCCACAGTTACCGCAGGCATTACTGGCAACGCTGGTGTCGACAACCATCGCGGC‑GGTCGGGGCATTGTTGATTGCCCTGCTGGTGATTGTGGCGC‑TGTGGCCTGGGCCGAAA‑TGGCAGCG‑TATGTGG‑GCCCGCCTGCCCGGGCTGCCCCCCC‑TTCCCCCTGGTGC‑TTTTGCCCCCCGCCCCCTTCTTCCCTTTTTTGCCgggggggg                                                                                                               >  2:292567/1‑237 (MQ=255)

                                                                                                                                   cacacTGGCCGGCGTTATTGGCCGAGCCCCGGTTACCGCAGGCATTCCCGGCAACGCTGGTGTCGACAACCATCGCGGC‑GGTCGGGGCATTGTTGATTGCCCTGCTGGTGATTGTGGCGC‑TGTGGCCTGGGCCGAAA‑TGGCAGCG‑TATGTGC‑GCCCGTCTGCCGTGGCTGCTCGCCA‑TTCCCCATGTGGC‑TTTTGCCACCAGCGCCCTTCTGCTCTTTGCTGACGGAGGGCTGCTTTAt                                                                                                        <  1:1054268/239‑1 (MQ=255)

                                                                                                                                         gggaGGCGTTATTTGCCGGTCCACAGTGACCGCAGGCATTGATGGCAATGCTGGTGTCGACAACCATCGCGGC‑GGTCGGGGCATTGTTGATTGCCCTGCTGGTGATTGTGGCGC‑TGTGGCCTGGGCCGAAA‑TGGCAGCG‑TATGTGC‑GCCCGTCTGCCGTGGCTGCTCGCCA‑TTCCCCATGTGGC‑TTTTGCCACCAGCGCCCTTCTGCTCTTTGCTGACGGAGGGCTGCTTTATGACTAt                                                                                                  <  1:509642/236‑1 (MQ=255)

                                                                                                                                          ggcggCTTTTTTTGCCGACCCCACGTTCCCGCGGGGTTGACTGGCCACGGTGGGTGCGACAACCGTCGCCGC‑GGTCGGGTCATTGTTGATTGCCCTGCTGGTGATTGTGGCGC‑TGTGGCCTGGGCCGAAA‑TGGCAGCG‑TATGTGC‑GCCCGTCTGCCGTGGCTGCTCGCCA‑TTCCCCATGTGGC‑TTTTGCCACCAGCGCCCTTCTGCTCTTTGCTGACGGAGGGCTGCTTTATGACTAtt                                                                                                 <  2:947565/236‑1 (MQ=255)

                                                                                                                                             ggCGTTATTTGCCGATCCACAGTTACCGCAGTCATTACTGGCAACGCTGGTGTCGGAAACCATCGGGGC‑GGTCGGGGCATTGTTGATTGCCCTGCTGGTGATTGTGGCGC‑TGTGGCCTGGGCCGAAA‑TGGCAGCG‑TATGTGC‑GCCCGTCTGCCGTGGCTGCTCGCCA‑TTCCCCATGTGGC‑TTTTGCCACCAGCGCCCTTCTGCTCTTTGCTGACGGAGGGCTGCTTTATGACTATTTc                                                                                               <  1:236381/238‑1 (MQ=255)

                                                                                                                                                  tATTTGCAGATCCACAGTTACCGCAGGCATTACTGGCAACGCTGGGTTCGACAACCATCGCGGC‑GGTCGGGGCATTGTTGATTGCCCTGCTGGTGATTGTGGCGC‑TGTGGCCTGGGCCGAAA‑TGGCAGCG‑TATGTGC‑GCCCGTCTGCCGTGGCTGCTCGCCA‑TTCCCCATGTGGC‑TTTTGCCACCAGCGCCCTTCTGCTCTTTGCTGACGGAGGGCTGCTTTATGACTATTTCCCGTAt                                                                                         <  1:50795/239‑1 (MQ=255)

                                                                                                                                                    tttGCCGATCCACAGTTACCGCAGGCATTACTGGCAACGCTGGTGTCGACAACCATCGCGGC‑GGTCGGGGCATTGTTGATTGCCCTGCTGGTGATTGTGGCGC‑TGTGGCCTGGGCCGAAA‑TGGCAGCG‑TATGTGC‑GCCCGTCTGCCGTGGCTGCTCGCCA‑TTCCCCATGTGGC‑TTTTGCCACCAGCGCCCTTCTGCTCTTTGCTGCAGGGGGGCTGCTTTATGACTATTTCCCGGAttt                                                                                       >  1:12695/1‑239 (MQ=255)

                                                                                                                                                       gCCGATCAACAGTTCCCGCAGGCATTACTGGCAACGCTGGTGTCGACAACCATCGCGGC‑GGTCGGGGCATTGTTGATTGCCCTGCTGGTGATTGTGGCGC‑TGTGGCCTGGGCCGAAA‑TGGCAGCG‑TATGTGC‑GCCCGTCTGCCGTGGCTGCTCGCCA‑TTCCCCATGTGGC‑TTTTGCCACCAGCGCCCTTCTGCTCTTTGCTGACGGAGGGCTGCTTTATGACTATTTCCCGTATTTCAc                                                                                    <  1:934592/239‑1 (MQ=255)

                                                                                                                                                                       cGCAGGCATTACTGGCAACGCTGGTGTCGACAACCATCGCGGC‑GGTCGGGGCATTGTTGATTGCCCTGCTGGTGATTGTGGCGC‑TGTGGCCTGGGCCGAAA‑TGGCAGCG‑TATGTGC‑GCCCGTCTGCCGTGGCTGCTCGCCA‑TTCCCCATGTGGC‑TTTTGCCACCAGCGCCCTTCTGCTCTTTGCTGCCGGAGGGCTGCTTTATGACTATTTCCCGCATTTCACTCCGCCCATGGGCCGa                                                                    >  1:773448/1‑239 (MQ=255)

                                                                                                                                                                       cGCAGGCATTACTGGCAACGCTGGTGTCGACAACCATCGCGGC‑GGTCGGGGCATTGTTGATTGCCCTGCTGGTGATTGTGGCGC‑TGTGGCCTGGGCCGAAA‑TGGCAGCG‑TATGTGC‑GCCCGTCTGCCGTGGCTGCTCGCCA‑TTCCCCATGTGGC‑TTTTGCCACCAGCGCCCTTCTGCTCTTTGCTGACGGAggg                                                                                                                 <  2:657727/194‑1 (MQ=255)

                                                                                                                                                                       cGCAGGCATTACTGGCAACGCTGGTGTCGACAACCATCGCGGC‑GGTCGGGGCATTGTTGATTGCCCTGCTGGGGATTGTGGCGC‑TGTGGCCTGGGCCGAAA‑TGGCAGCG‑TATGTGC‑GCCCGTCTGCCGTGGCTGCTCGCCA‑TTCCCCATGTGGC‑TTTTGCCACCAGCGCCCTTCTGCTCTTTGCTGACGGAggg                                                                                                                 >  1:657727/1‑194 (MQ=255)

                                                                                                                                                                         cAGGCTTTCCTGGCACCGCTGGTTGGGACAACCATGCCGGG‑GGTCGGGGCATTGTTGATTGCCCTGCTGGTGATTGTGGCGC‑TGTGGCCTGGGCCGAAA‑TGGCAGCG‑TATGTGC‑GCCCGTCTGCCGTGGCTGCTCGCCA‑TTCCCCATGTGGC‑TTTTGCCACCAGCGCCCTTCTGCTCTTTGCTGACGGAGGGCTGCTTTATGACTATTTCCCGTATTTCACTCCGCCAATGGACCGAtt                                                                  <  2:773448/239‑1 (MQ=255)

                                                                                                                                                                           ggCATTACTGGCAACGCTGGTGTCGACAACCATCGCGGC‑GGTCGGGGCATTGTTGATTGCCCTGCTGGTGATTGTGGCGC‑TGTGGCCTGGGCCGAAA‑TGGCAGCG‑TATGTGC‑GCCCGTCTGCCGTGGCTGCTCGCCA‑TTCCCCATGTGGC‑TTTTGCCACCAgcg                                                                                                                                           <  2:64423/164‑1 (MQ=255)

                                                                                                                                                                           ggCATTACTGGCAACGCTGGTGTCGACAACCATCGCGGC‑GGTCGGGGCATTGTTGATTGCCCTGCTGGTGATTGTGGCGC‑TGTGGCCTGGGCCGAAA‑TGGCAGCG‑TATGTGC‑GCCCGTCTGCCGTGGCTGCTCGCCA‑TTCCCCATGTGGC‑TTTTGCCACCAgcg                                                                                                                                           >  1:64423/1‑164 (MQ=255)

                                                                                                                                                                               ttgccggaaaCGGTGGTTGCGACAACCCTCGGGGC‑GGGCGGGGCATTGTTGATTGCCCTGGTGGTGATTGTGGCGC‑TGTGGCCTGGGCCGAAA‑TGGCAGCG‑TATGTGC‑GCCCGTCTGCCGTGGCTGCTCGCCA‑TTCCCCATGTGGC‑TTTTGCCACCAGCGCCCTTCTGCTCTTTGCTGACGGAGGGCTGCTTTATGACTATTTCCCGTATTTCACTCCGCCAATGGACCGATTTGGCAt                                                            <  2:232333/231‑1 (MQ=255)

                                                                                                                                                                                     ggcaCGCTGGTGGCGACACCCAGCGGGGG‑GGTGGGGGCTTTGTTGATTGCCCTGTGGGTGATTGTGGCGC‑TGTGGCCTGGGCCGAAA‑TGGCAGCG‑TATGTGC‑GCCCGTCTGCCGTGGCTGCTCGCCA‑TTCCCCATGTGGC‑TTTTGCCACCAGCGCCCTTCTGCTCTTTGCTGACGGAGGGCTGCTTTATGACTATTTCCCGTATTTCACTCCGCCAATGGACCGATTTGGCATCGGTc                                                       <  2:682752/235‑1 (MQ=255)

                                                                                                                                                                                      cAACGCTGGTGTCGACAACCATCGCGGC‑GGTCGGGGCATTGTTGATTGCCCTGCTGGTGATTGTGGCGC‑TGTGGCCTGGGCCGAAA‑TGGCAGCG‑GATGTGC‑GCCCGGCTGCCGGGGCTGCTCGCCA‑TTCCCCCTGTGGC‑TTTTGCCACCAGCGCCCGTCTGCTCTTTTCTTGCGGGGGGCCGGTTTTTGCCATTTTCCCGGATTTCCCCCCCCCCATGGACCCAATTGGGACCGGTCTg                                                     >  2:391537/1‑239 (MQ=255)

                                                                                                                                                                                         cGCTGGTGTCGACAACCATCGCGGC‑GGTCGGGGCATTGTTGATTGCCCTGCTGGTGATTGTGGCGC‑TGTGGCCTGGGCCGAAA‑TGGCAGCG‑TATGTGC‑GCCCGTCTGCCGTGGCTGCTCGCCA‑TTCCCCATGTGGC‑TTTTGCCACCAGCGCCCTTCTGCTCTTTGCTGACGGAGGGCTGCTTTATGACTATTTCCCGTATTTCACTCCGCCAATGGACCGATTTGGCATCGGTCTGGGc                                                  <  1:787401/239‑1 (MQ=255)

                                                                                                                                                                                           ggggggggccaaaCCAT‑GCGGCTGGTGGGGGGTTTGTTGATGCCCTTGCTGGGGGTTGTGGCGC‑GGTGCCCTGGGCCGAAA‑TGGCGGCG‑TATGTGC‑GCCCGTCTGCCGTGGCTGCTCGCCA‑TTCCCCATGTGGC‑TTTTGCCGCCAGCGCCCTTCTGCTCTTTGCTGACGGAGGGCTGCTTTATGACTATTTCCCGTATTTCACTCCGCCAATGGACCGATTTGGCATCGGTCTGGGCCt                                                <  2:896568/228‑1 (MQ=255)

                                                                                                                                                                                           ggggTGTCGCAACCCCTCGGGGC‑GGTGGGGGTCGTGTTGTTTGCCGTGGTGGGGGTTGGGGCGC‑GGTGGCCGGGGCCGAAA‑TGGCAGCG‑TATGTGC‑GCCCGTCTGCCGTGGCTGCTCGCCA‑TTCCCCATGTGGC‑TTTTGCCACCAGCGCCCTTCTGCTCTTTGCTGACGGAGGGCTGCTTTATGACTATTTCCCGTATTTCACTCCGCCAATGGACCGATTTGGCATCGGTCTGGGCCt                                                <  2:171551/237‑1 (MQ=255)

                                                                                                                                                                                            tggttgcGACAACCATCGCGGC‑GGTCGGGGCATTGTTGATTGCCCTGCTGGTGATTGTGGCGC‑TGTGGCCTGGGCCGAAA‑TGGCAGCG‑TATGTGC‑GCCCGTCTGCCGTGGCTGCTCGCCA‑TTCCCCATGTGGC‑TTTTGCCACCAGCGCCCTTCTGCTCTTTGCTGACGGAGGGCTGCTTTATGACTATTTCCCGTATTTCACTCCGCCAATGGACCGATTTGGCATCGGTCTGGGCCt                                                <  1:8390/232‑1 (MQ=255)

                                                                                                                                                                                            tGGTGTCGACAACCATCGCGGC‑GGTCGGGGCATGTTTGATTGGCCTGCTGGTGATGGGGGCGC‑TGTGGCCGGGGCCGAAA‑TGGCAGCG‑TATGTGC‑GCCCGGCTGCCGTGGCTGCTCGCCA‑TTCCCCATGTGGC‑TTTTGCCACCAGCGCCCTTCTGCTCTTTGCTGACGGAGGGCTGCTTTATGACTATTTCCCGTATTTCACTCCGCCAATGGACCGATTTGGCATCGGTCTGGGCCt                                                <  1:291165/238‑1 (MQ=255)

                                                                                                                                                                                                 tCGGCAACCATCGCGGC‑GGTCGGGGCATTGTTGATTGCCCTGCTGGTGATTGGGGCGC‑TGGGGCCTGGGCCGAAA‑TGGCAGCG‑TATGTGC‑GCCCGTCTGCCGTGGCTGCTCGCCA‑TTCCCCATGTGGC‑TTTTGCCACCAGCGCCCTTCTGCTCTTTGCTGACGGAGGGCTGCTTTATGACTATTTCCCGTATTTCACTCCGCCAATGGACCGATTTGGCATCGGTCTGGGCCTCAccc                                           <  1:888521/238‑1 (MQ=255)

                                                                                                                                                                                                   gACAACCATCGGGGG‑GGTCGGGGCATTGTTGATTGCCCTGCTGGTGATTGTGGCGC‑TGTGGCCTGGGCCGAAA‑TGGCAGCG‑TATGTGC‑GCCCGTCTGCCGTGGCTGCTCGCCA‑TTCCCCATGTGGC‑TTTTGCCACCAGCGCCCTTCTGCTCTTTGCTGACGGAGGGCTGCTTTATGACTATTTCCCGTATTTCACTCCGCCAATGGACCGATTTGGCATCGGTCTGGGCCTCACCCTTg                                        <  1:174474/239‑1 (MQ=255)

                                                                                                                                                                                                    aCAACCATCGCGGC‑GGTCGGGGCATTGTTGATTGCCCTGCTGGTGATTGTGGCGC‑TGGGGCCTGGGCCGAAA‑TGGCAGCG‑TATGTGC‑GCCCGTCTGCCGTGGCTGCTCGCCA‑TTCCCCATGTGGC‑TTTTGCCACCAGCGCCCTTCTGCTCCTTGCTGGCGGGGGGCTGCTTTATGACTATTTCCCCTTTTTTACTCCGCCAAAGGACCCATTTTGCATCGGTCTGGGCCCCACCCCTGc                                       >  2:555165/1‑239 (MQ=255)

                                                                                                                                                                                                    aCAACCATCGCGGC‑GGTCGGGGCATTGTTGATTGCCCTGCTGGGGATTGTGGCGC‑TGTGGCCTGGGCCGAAA‑TGGCAGCG‑TATGTGC‑GCCCGTCTGCCGTGGCTGCTCGCCA‑TTCCCCATGTGGC‑TTTTGCCCCCCGCCCCCTTTCTCCCTTTTCTGACGGGGGGCTGCTTTTTGCCCCTTTTCCCTATTTCACTCCCCCCATGGACCCGTTTTGCCACCGCCTGGGcccccccccttc                                       >  2:522338/1‑235 (MQ=255)

                                                                                                                                                                                                         cATCGCGGC‑GGTCGGGGCATTGTTGATTGCCCTGCTGGTGATTGTGGCGC‑TGTGGCCTGGGCCGAAA‑TGGCAGCG‑TATGTGC‑GCCCGTCTGCCGGGGCTGCTCGCCA‑TTCCCCCTGTGGC‑TTTTGCCACCAGCGCCCTTCTGCTCTTTGCTGACGGAGGGCTGCTTTATGACTATTTCCCGTATTTCACTCCGCCAATGGACCGATTTTGCATCGGTCTGGGCCTCACCCTTGCAGTga                                  >  1:238512/1‑239 (MQ=255)

                                                                                                                                                                                                           tCGCGGC‑GGTCGGGGCATTGTTGATTGCCCTGCTGGTGATTGTGGCGC‑TGTGGCCTGGGCCGAAA‑TGGCAGCG‑TATGTGC‑GCCCGTCTGCCGTGGCTGCTCGCCA‑TTCCCCATGTGGC‑TTTTGCCACCAGCGCCCTTCTGCTCTTTGCTGACGGAGGGCTGCTTTATGACTATTTCCCGTATTTCACTCCGCCAATGGACCGATTTGGCATCGGTCTGGGCCTCACTCTTTCACTgcaa                                <  1:292567/239‑1 (MQ=255)

                                                                                                                                                                                                              cggc‑ggTCGGGGCATTGTGGATTGCCCTGCTGGTGAGTGTGGGGC‑TGGGGCCTGGGCCGAAA‑TGGCAGCG‑TATGTGC‑GCCCGTCTGCCGTGGCTGCTCGCCA‑TTCCCCATGTGGC‑TTTTGCCACCAGCGCCCTTCTGCTCTTTGCTGACGGAGGGCTGCTTTATGACTATTTCCCGTATTTCACTCCGCCAATGGACCGATTTGGCATCGGTCTGGGCCTCACCCTTGCAGTgaaaga                              <  1:522338/238‑1 (MQ=255)

                                                                                                                                                                                                                    gtgggggCATTGTTGATTGCCCTGCTGGTGATTGGGGCGC‑TGGGGCCTGGGCCGAAA‑TGGCAGCG‑TATGTGC‑GCCCGTCTGCCGTGGCTGCTCGCCA‑TTCCCCATGTGGC‑TTTTGCCACCAGCGCCCTTCTGCTCTTTGCTGACGGAGGGCTGCTTTATGACTATTTCCCGTATTTCACTCCGCCAATGGACCGATTTGGCATCGGTCTGGGCCTCACCCTTGCAGTGAAAGAAAgcg                         <  1:694032/235‑1 (MQ=255)

                                                                                                                                                                                                                     tCGGGGCATTGTTGATTGCCCTGCTGGTGATTGTGGCGC‑TGTGGCCTGGGCCGAAA‑TGGCAGCG‑TATGTGC‑GCCCGTCTGCCGTGGCTGCTCGCCA‑TTCCCCATGTGGC‑TTTTGCCACCAGCGCCCTTCTGCTCTTTGCTGACGGAGGGCTGCTTTATGACTATTTCCCGTATTTCACTCCGCCAATGGACCGATTTGGCATCGGTCTGGGCCTCCCCCTTGCCGTGAAAGAAAGCGCa                       >  1:922316/1‑239 (MQ=255)

                                                                                                                                                                                                                          gcttttttgTTTGCCCGGTTGGTGATTGTGGGGC‑TGTGGCCTGGGCCGAAA‑TGGCAGCG‑TATGTGC‑GCCCGTCTGCCGTGGCTGCTCGCCA‑TTCCCCATGTGGC‑TTTTGCCACCAGCGCCCTTCTGCTCTTTGCTGACGGAGGGCTGCTTTATGACTATTTCCCGTATTTCACTCCGCCAATGGACCGATTTGGCATCGGTCTGGGCCTCACCCTTGCAGTGAAAGAAAGCGCATTTc                   <  2:238512/232‑1 (MQ=255)

                                                                                                                                                                                                                          gCATTGTTGATTGCCCTGCTGGTGATTGTGGCGC‑TGTGGCCTGGGCCGAAA‑TGGCAGCG‑TATGTGC‑GCCCGTCGGCCGTGGCTGCTCGCCA‑TTCCCCATGTGGC‑TTTTGCCACCAGCGCCCTTCTGCTCTTTGCTGACGGAGGGCTGCTTTATGACTATTTCCCGTATTTCACTCCGCCAATGGACCGATTTGGCATCGGTCTGGGCCTCACCCTTGCAGTGAAAGAAAGCGCATTTc                   <  1:576275/238‑1 (MQ=255)

                                                                                                                                                                                                                          gCATTGTTGATTGCCCGGCTGGTGATTGTGGCGC‑TGTGGCCTGGGCCGAAA‑TGGCAGCG‑TATGTGC‑GCCCGTCTGCCGTGGCTGCTCGCCA‑TTCCCCATGTGGC‑TTTTGCCACCAGCGCCCTTCTGCTCTTTGCTGACGGAGGGCTGCTTTATGACTATTTCCCGTATTTCACTCCGCCAATGGACCGATTTGGCATCGGTCTGGGCCTCACCCTTGCAGTGAAAGAAAGCGCATTTc                   <  1:391537/238‑1 (MQ=255)

                                                                                                                                                                                                                            aTTGTTGATTGGCCTGGTGGTGATGGGGGCGC‑TGGGGCCTGGGCCGAAA‑TGGCAGCG‑TATGTGC‑GCCCGTCTGCCGTGGCTGCTCGCCA‑TTCCCCATGTGGC‑TTTTGCCAGCAGCGCCCTTCTGCTCTTTGCTGACGGAGGGCTGCTTTATGACTATTGCCCGTATTTCACTCCGCCAATGGACCGATTTGGCATCGGTCTGGGCCTCACCCTTGCAGTGAAAGAAAGCGCATTTctg                 <  1:351783/238‑1 (MQ=255)

                                                                                                                                                                                                                              tgtttgttGCCCTGGTGGTGGTTGGGGCGT‑GGGGGCCTGGGCCGAAA‑GGGCAGCG‑TTTGTGC‑GCCCGTCTGCCGTGGCTGCTCGCCA‑TTCCCCATGTGGC‑TTTTGCCACCAGCGCCCTTCTGCTCTTTGCTGACGGAGGGCTGCTTTATGACTATTTCCCGTATTTCACTCCGCCAATGGACCGATTTGGCATCGGTCTGGGCCTCACCCTTGCAGTGAAAGAAAGCGCATTTctgctg              <  2:953722/233‑1 (MQ=255)

                                                                                                                                                                                                                              tgttgATTGCCGTGCTGGTGGTTGTGGCGC‑TGTGTCCTGGGCCGAAA‑TGGCAGCG‑TATGTGC‑GCCCGTCTGCCGTGGCTGCTCGCCA‑TTCCCCATGTGGC‑TTTTGCCACCAGCGCCCTTCTGCTCTTTGCTGACGGAGGGCTGCTTTATGACTATTTCCCGTATTTCACTCCGCCAATGGACCGATTTGGCATCGGTCTGGGCCTCACCCTTGCAGTGAAAGAAAGCGCATTTctgctg              <  1:187112/239‑1 (MQ=255)

                                                                                                                                                                                                                              tgttgATTGCCCTGCTGGTGAGTGTGGCGC‑TGTGGCCTGGGCCGAAA‑TGGCAGCG‑TATGTGC‑GCCCGTCTGCCGTGGCTGCTCGCCA‑TTCCCCATGTGGC‑TTTTGCCACCAGCGCCCTTCTGCTCTTTGCTGACGGAGGGCTGCTTTATGACTATTTCCCGTATTTCACTCCGCCAATGGACCGATTTGGCATCGGTCTGGGCCTCACCCTTGCAGTGAAAGAAAGCGCATTTctgctg              <  1:406882/239‑1 (MQ=255)

                                                                                                                                                                                                                              tgttgATTGCCCGGCTGGTGATTGTGGCGC‑TGTGGCCTGGGCCGAAA‑TGGCAGCG‑TATGTGC‑GCCCGTCTGCCGTGGCTGCTCGCCA‑TTCCCCATGTGGC‑TTTTGCCACCAGCGCCCTTCTGCTCTTTGCTGACGGAGGGCTGCTTTATGACTATTTCCCGTATTTCACTCCGCCAATGGACCGATTTGGCATCGGTCTGGGCCTCACCCTTGCAGTGAAAGAAAGCGCATTTctgctg              <  1:778998/239‑1 (MQ=255)

                                                                                                                                                                                                                                   aTTGCCCTGCTGGTGATTGTGGCGC‑TGTGGCCTGGGCCGAAA‑TGGCAGCG‑TATGTGC‑GCCCGTCTGCCGTGGCTGCTCGCCA‑TTCCCCATGTGGC‑TTTTGCCACCAGCGCCCTTCTGCTCTTTGCTGACGGAGGGCTGCTTTATGACTATTTCCCGTATTTCACTCCGCCAATGGACCGATTTGGCATCGGTCTGGGCCTCACCCTTg                                        <  1:751674/208‑1 (MQ=255)

                                                                                                                                                                                                                                   aTTGCCCTGCTGGTGATTGTGGCGC‑TGTGGCCTGGGCCGAAA‑TGGCAGCG‑TATGTGC‑GCCCGTCTGCCGTGGCTGCTCGCCA‑TTCCCCATGTGGC‑TTTTGCCACCAGCGCCCTTCTGCTCTTTGCTGACGGAGGGCTGCTTTATGACTATTTCCCGTATTTCACTCCGCCAATGGACCGATTTGGCATCGGTCTGGGCCTCACCCTTg                                        >  2:751674/1‑208 (MQ=255)

                                                                                                                                                                                                                                      gCCCTGGTGGTGATTGTGGCGC‑TGGGGCCGTGGCCGAAT‑TGGCACCG‑GATGTGC‑GCCCGTCTGCCGTGGCTGCTCGCCA‑TTCCCCATGTGGC‑TTTTTCCACCAGCGCCCTTCTGCTCTTTGCTGACGGAGGGCTGCTTTATGACTATTTCCCGTATTTCACTCCGCCAATGGACCGATTTGGCATCGGTCTGGGCCTCACCCTTGCAGTGAAAGAAAGCGCATTTCTGCTGTGGATCtt      <  1:637208/239‑1 (MQ=255)

                                                                                                                                                                                                                                      gCCCTGGTGGGGGGTTTGGCGC‑TGTGGCCTGGGCCGAAA‑TGGCGGCG‑TATGTGC‑CCCCGGCTGCCGTGGCTGCTCGCCA‑TTCCCCATGTGGC‑TTTTGCCACCAGCGCCCTTCTGCTCTTTGCTGACGGAGGGCTGCTTTATGACTATTTCCCGTATTTCACTCCGCCAATGGACCGATTTGGCATCGGTCTGGGCCTCACCCTTGCAGTGAAAGAAAGCGCATTTCTGCTGTGGATCtt      <  2:99071/239‑1 (MQ=255)

                                                                                                                                                                                                                                        ccggctgGTTGTTGTGGCGC‑TTTTGCCTGGGCCGAAA‑TGGCAGGG‑TATGGGC‑GCCCGTCCGCCGTGGCTGCTCGCCA‑TTCCCCATGTGGC‑TTTTGCCACCAGCGCCCTTCTGCTCTTTGCTGACGGAGGGCTGCTTTATGACTATTTCCCGTATTTCACTCCGCCAATGGACCGATTTGGCATCGGTCTGGGCCTCACCCTTGCAGTGAAAGAAAGCGCATTTCTGCTGTGGATCTTag    <  1:424269/236‑1 (MQ=255)

                                                                                                                                                                                                                                        ccggctgGTGATTGTGGCGC‑TGTGGCCTGGGCCGAAA‑TGGCAGCG‑TATGTGC‑GCCCGTCTGCCGTGGCTGCTCGCCA‑TTCCCCATGTGGC‑TTTTGCCACCAGCGCCCTTCTGCTCTTTGCTGACGGAGGGCTGCTTTATGACTATTTCCCGTATTTCACTCCGCCAATGGACCGATTTGGCATCGGTCTGGGCCTCACCCTTGCAGTGAAAGAAAGCGCATTTCTGCTGTGGATCTTag    <  1:899917/236‑1 (MQ=255)

                                                                                                                                                                                                                                          tgctgGTGATTGTGGGCC‑TGGGGCCTGGGCCGAAA‑TGGCAGCG‑TATGTGC‑GCCCGTCTGCCGTGGCTGCTCGCCA‑TTCCCCATGTGGC‑TTTTGCCACCAGCGCCCTTCTGCTCTTTGCTGACGGAGGGCTGCTTTATGACTATTTCCCGTATTTCACTCCGCCAATGGACCGATTTGGCATCGGTCTGGGCCTCACCCTTGCAGTGAAAGAAAGCGCATTTCTGCTGTGGATCTTagca  <  1:555165/239‑1 (MQ=255)

                                                                                                                                                                                                                                          tgctgGTGATTGTGGCGC‑TGTGGCCTGGGCCGAAA‑TGGCAGCG‑TATGTGC‑GCCCGTCTGCCGTGGCTGCTCGCCA‑TTCCCCATGTGGC‑TTTTGCCACCAGCGCCCTTCTGCTCTTTGCTGACGGAGGGCTGCTTTATGACTATTTCCCGTATTTCACTCCGCCAATGGACCGATTTGGCATCGGTCTGGGCCTCACCCTTGCAGTGAAAGAAAGCGCATTTCTGCTTTGGATCTTagca  >  1:576749/1‑239 (MQ=255)

TGCGCTGGAACAAGAATGGCTACACCGTTACGGTACGCATTAATCTTTTTGCTGTGGGCGATGGTGGCGGTGATTTATGCACCGCTGATCCCGGCAGCTCT‑CACGCTGATATCGCCTGCTTTGTCGTTGACACACTGGCAGGCGTTATTTGCCGATCCACAGTTACCGCAGGCATTACTGGCAACGCTGGTGTCGACAACCATCGCGGC‑GGTCGGGGCATTGTTGATTGCCCTGCTGGTGATTGTGGCGC‑TGTGGCCTGGGCCGAAA‑TGGCAGCG‑TATGTGC‑GCCCGTCTGCCGTGGCTGCTCGCCA‑TTCCCCATGTGGC‑TTTTGCCACCAGCGCCCTTCTGCTCTTTGCTGACGGAGGGCTGCTTTATGACTATTTCCCGTATTTCACTCCGCCAATGGACCGATTTGGCATCGGTCTGGGCCTCACCCTTGCAGTGAAAGAAAGCGCATTTCTGCTGTGGATCTTAGCA  >  NC_000913/1837197‑1837667

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 13 ≤` `ATCG/ATCG` `< 25 ≤` `ATCG/ATCG` `< 39 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A