Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A4 F9 I0 R1 177 96.4 2178490 87.4% 1904000 226.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_000913 3,289,078 C→A 19.2% Q89K (CAG→AAG)  yraJ → putative outer membrane protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,289,0780CA19.2% 252.9 / 10.2 97Q89K (CAG→AAG) yraJputative outer membrane protein
Reads supporting (aligned to +/- strand):  ref base C (69/8);  new base A (3/17);  total (72/25)
Fisher's exact test for biased strand distribution p-value = 2.41e-10
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

AAACGCACACCGAAACAGTTGGCGCTCATCATCAAACGTTGTTTGCCGATGGTGCTCACTGGCAGCGGCATGCTTTGCACTACCGCTAACGCCGAAGAGTATTATTT‑CGACCCCATTATGCTGGAAACCAC‑AAAAAGTGGTATGCAAACAACCGATCTGT‑CGCGTTTTTCAAAAAAATATGCACAACTACCAGGAACTTATCAGGTTGATATCTGGCTGAATAAAAAGAAGGTTTCACAGAAAAAAATTACATTTACCGCCAATGCAGAGCAACTTCTGCAGCCACAGTTTACGGTAGAACAACTACGTGAGCTGGGTATTAAGGTGGATGAAATCCCGGCGCTGGCTGAAAAAGATGACGATAGCGTGATCAACTCGCTTGAACAAATCATTCCCGGTACAGCTGCTGAATTTGATTTCAATCATCAGCAACTTAATTTGAGCATTCCCCAAATTGCACTGTACCG  >  NC_000913/3288841‑3289307
                                                                                                                                                                                                                                                |                                                                                                                                                                                                                                     
aaaCGCACACCGAAACAGTTGGCGCTCATCATCAAACGTTGTTTGCCGATGGTGCTCACTGGCAGCGGCATGCTTTGCACTACCGCTAACGCCGAAGAGTATTATTT‑CGACCCCATTATGCTGGAAACCAC‑AAAAAGTGGTATGCAAACAACCGATCTGT‑CGCGTTTTTCAAAAAAATATGCACAACTACCAGGCACTTATCAGGTTGTTATCTGGCTGAAAAAAAAGAAGGTTTcaca                                                                                                                                                                                                                                      >  1:498777/1‑239 (MQ=255)
   cGCACACCGAAACAGTTGGCGCTCATCATCAAACGTTGTTTGCCGATGGTGCTCACTGGCAGCGGCATGCTTTGCACTACCGCTAACGCCGAAGAGTATTATTT‑CGACCCCATTATGCTGGAAACCAC‑AAAAAGTGGAATGCAAACAACCGATCTGT‑CGCGTTTTTCACAAAAATATGCCCAACTACCAGGAACTTATCAGGTTGTTATCTGGCTGAAAAAAAAAAAGGTTTCACaaaa                                                                                                                                                                                                                                   >  2:937065/1‑239 (MQ=255)
     cacaCCGAAACAGTTGGCGCTCATCATCAAACGTTGTTTGCCGATGGTGCTCACTGGCAGCGGCATGCTTTGCACTACCGCTAACGCCGAAGAGTATTATTT‑CGACCCCATTATGCTGGAAACCAC‑AAAAAGTGGTATGCAAACAACCGATCTGT‑CGCGTTTTTCAAAAAAATATGCACAACTACCAGGAACTTATCAGGTTGGTATCTGGCTGAAAAAAAAAAAGGTTTAAAAGaaaa                                                                                                                                                                                                                                 >  2:968643/1‑239 (MQ=255)
     cacaCCGAAACAGTTGGCGCTCATCATCAAACGTTGTTTGCCGATGGTGCTCACTGGCAGCGGCATGCTTTGCACTACCGCTAACGCCGAAGAGTATTATTT‑CGACCCCATTATGCTGGAAACCAC‑AAAAAGTGGTATGCAAACAACCGATCTGT‑CGCGTTTTTCAAAAAAATATGCACAACTACCAGGAACTTATCAGGTTGCTATCTGGCTGAATAAAAAGAAGGTTTCACAGcaaa                                                                                                                                                                                                                                 >  1:833950/1‑239 (MQ=255)
        acCGAAACAGTTGGCGCTCATCATCAAACGTTGTTTGCCGATGGTGCTCACTGGCAGCGGCATGCTTTGCACTACCGCTAACGCCGAAGAGTATTATTT‑CGACCCCATTATGCTGGAAACCAC‑AAAAAGTGGTATGCAACCAACCGATCTGT‑CGCGTTTTTCAAAAAAATATGCACAACTCCCAGGAACTTATCAGGTTGATATCTGGCTGAATAAAAAGAAGGTTTCACAGaaaaaaa                                                                                                                                                                                                                              >  1:1056377/1‑239 (MQ=255)
        acCGAAACAGTTGGCGCTCATCATCAAACGTTGTTTGCCGATGGTGCTCACTGGCAGCGGCATGCTTTGCACTACCGCTAACGCCGAAGAGGATTCTTT‑CGACCCCATTATGCTGGAAACCAC‑AAAACGTGGTATGCAAACAACCGATCTGT‑CGCGTTTTTCAAAAAAATATGCACAATTACCAGGAACTTATCAGGTTGCATTCTGGCGGAATAAAAAGAAGGTTTaaaaaaaaaaaa                                                                                                                                                                                                                              >  2:1289/1‑239 (MQ=255)
                    ggCGCTCATCATCAAACGTTGTTTGCCGATGGTGCTCACTGGCAGCGGCATGCTTTGCACTACCGCTAACGCCGAAGAGTATTATTT‑CGACCCCATTATGCTGGAAACCAC‑AAAAAGTGGTATGCAAACAACCGATCTGT‑CGCGTTTTTCAAAAAAATATGCCCAACTACCAGGAACTTATCAGGTTGATATCTGGCTGAATAAAAAAAAGGTTTAAAAGAAAAAAATTAAATTTAcc                                                                                                                                                                                                                   >  2:446648/1‑238 (MQ=255)
                    ggCGCTCATCATCAAACGTTGTTTGCCGATGGTGCTCACTGGCAGCGGCATGCTTTGCACTACCGCTAACGCCGAAGAGTATTATTT‑CGACCCCATTATGCTGGAAACCAC‑AAAAAGTGGTATGCAAACAACCGATCTGT‑CGCGTTTTTCAAAAAAATATGCACAACTACCAGGAACTTATCAGGTTGATATCTGGCTGAATAAAAAGAAGGTTTCACAGAAAAAAATTACATTTAcc                                                                                                                                                                                                                   >  1:259521/1‑238 (MQ=255)
                    ggCGCTCATCATAAAACGTTGTTTGCCGATGGTGCTCACTGGCAGCGGCATGCTTTGCACTACCGCTAACGCCGAAGAGGATTATTT‑CGACCCCATTATGCTGGAAACCAC‑AAAAAGTGGTATGCAACAAACCGATCTGA‑CGGGTTTTCAAAAAAAATATGACCAATAACCAGAAACTTACCAGGTTGATATCAGGCTGAATAAAAAAAAGGTTAGAAAGAAAAAAAATAAATTTaac                                                                                                                                                                                                                   >  2:574166/1‑236 (MQ=255)
                        cTCATCATCAAACGTTGTTGGCCGTTGGTGCTCAGTGGCAGCGGCATTCTTTGCACTACCGCTAACGCCGAAGAGTTTTATTT‑CGACCCCATTATGCTGGAAACCAA‑AAAAAGTGGTATGCAAACAACCGATCTGT‑CGCGTTTTTAAAAAAAATATGCACAACTACCAGGAACTTATCAGGTTGATATCTGGCTGAATAAAAAGAAGGTTTCACAGAAAAAAATTACATTTACCGCCaa                                                                                                                                                                                                              <  1:23263/239‑1 (MQ=255)
                                       tgttTGCCGATGGTGCTCACTGGCAGCGGCATGCTTTGCACTACCGCTAACGCCGAAGAGTATTATTT‑CGACCCCATTATGCTGGAAACCAC‑AAAAAGTGGTATGCAAACAACCGATCTGT‑CGCGTTTTTCAAAAAAATATGCACAACTACCAGGAACTTATCAGGTTGATATCTGGCTGAATAAAAAGAAGGTTTCACAGAAAAAAATTACATTTACCGCCAATGCAGAGCAACt                                                                                                                                                                                                  >  1:579459/1‑236 (MQ=255)
                                         tttGCCGATGGTGCTCACTGGCAGCGGCATGCTTTGCACTACCGCTAACGCCGAAGAGTATTATTT‑CGACCCCATTATGCTGGAAACCAC‑AAAAAGTGGTATGCAAACAACCGATCTGT‑CGCGTTTTTCAAAAAAATATGCACAACTACCAGGAACTTATCAGGTTGATATCTGGCTGAATAAAAAGAAGGTTTCACAGAAAAAAATTACATTTACCGCCAATGCAGAGCAACTTCTGc                                                                                                                                                                                             >  1:929507/1‑239 (MQ=255)
                                              cGATGGTGCTCACTGGCAGCGGCATGCTTTGCACTACCGCTAACGCCGAAGAGTATTATTT‑CGACCCCATTATGCTGGAAACCAC‑AAAAAGTGGTATGCAAACAACCGATCTGT‑CGCGTTTTTCAAAAAAATATGCACAACTACCAGGAACTTATTAGGTTGATATCTGGCTGAATAAACAGAAGGATTCACAGAAAAAAATTACATTTACCGCAAATGCTGAGCAACTTCTGAAGCca                                                                                                                                                                                        >  1:573240/1‑239 (MQ=255)
                                                 tGGTGCTCACTGGCAGCGGCATGCTTTGCACTACCGCTAACGCCGAAGAGTATTATTT‑CGACCCCATTATGCTGGAAACCAC‑AAAAAGTGGTATGCAAACAACCGATCTGT‑CGCGTTTTTCAAAAAAATATGCACAACTACCAGGAACTTATCAGGTTGATATCTGGCTGAATAAAAAGAAGGTTTCACAGAAAAAAATTACATTTACCGCCAATGCAGAGCAACTTCTGCAGCCACAg                                                                                                                                                                                     >  1:1042670/1‑239 (MQ=255)
                                                 tGGTGCTCACTGGCAGCGGCATGCTTTGCACTACCGCTAACGCCGAAGAGTATTATTT‑CGAACCCATTATGCTGGAAACCAC‑AAAAAGTGGTATGCAAACAACCGATCTGT‑CGCGTTTTTCAAAAAAATATGCACAACTACCAGGAACTTATAAGGTTGATATCTGGCTGAATAAAAAGAAGGTTTCACAGAAAAAAATTACATTTACCCCCAATGCAGAGCAACTTCTGAAGCCACAg                                                                                                                                                                                     >  2:31388/1‑239 (MQ=255)
                                                              cAGCGGCATGCTTTGCACTACCGCTAACGCCGAAGAGTATTATTT‑CGACCCCATTATGCTGGAAACCAC‑AAAAAGTGGTATGCAAACAACCGATCTGT‑CGCGTTTTTCAAAAAAATATGCACAACTACCAGGAACTTATCAGGTTGATATCTGGCTGAATAAAAAGAAGGTTTCACAGAAAAAAATTACATTTACCGCCAATGCAGAGCAACTTCTGCAGCCACAGTTTACGGTAGaac                                                                                                                                                                        >  1:42808/1‑239 (MQ=255)
                                                              cAGCGGCATGCTTTGCACTACCGCTAACGCCGAAGAGTATTATTT‑CGACCCCATTATGCTGGAAACCAC‑AAAAAGTGGTATGCAAACAACCGATCTGT‑CGCGTTTTTCAAAAAAATATGCACAACTACCAGGAACTTATCAGGTTGATATCTGGCTGAATAAAAAGAAGGTTTCACAGAAAAAAATTACATTTACCGCAAATGCAGAGCAACTTCTGCAGCACCAGTTTACGGTAGaac                                                                                                                                                                        >  1:284804/1‑239 (MQ=255)
                                                                   gCATGCTTTGCACTACCGCTAACGCCGAAGAGTATTATTT‑CGACCCCATTATGCTGGAAACCAC‑AAAAAGTGGTATGCAAACAACCGATCTGT‑CGCGTTTTTCCAAAAAATATGCACAACTACCAGGAACTTATCAGGTTGATATCTGGCTGCATAAAAAGAAGGTTTCACAGAAAAAAATTACATTTACCGCCAATGCAGAGCAAATTCTGCAGCCACAGTTTACGGGAGaacaacaa                                                                                                                                                                   >  2:939738/1‑237 (MQ=255)
                                                                   gCATGCTTTGCACTACCGCTAACGCCGAAGAGTATTATTT‑CGACCCCATTATGCTGGAAACCAC‑AAAAAGTGGTATGCAAACAACCGATCTGT‑CGCGTTTTTCAAAAAAATATGCACAACTACCAGGAACTTATCAGGTTGATATCTGGCTGAATAAAAAGAAGGTTTCACAGAAAAAAATTACATTTACCGCCAATGCAAAGCAACTTCTGCAGCCACAATTTACGGTAAaaaaaca                                                                                                                                                                    >  2:745587/1‑237 (MQ=255)
                                                                         tttGCGATACCTATAACGCAAAAGA‑TTTTATTTGCGCCCCTATTAGTCGGAAAACAAA‑AAAAAGGGGGAGAAAAACAACCGATTTGT‑GGCGTTTTCAAAAAAAAAATGCAAAACTACCAGAAACTTATCAGGTTGTTACCGGGCTGAAAAAAAAGAAGGTTTCAAAGAAAAAAATTACATTTACCGCCAATGCAGAGCAACTTCTGCAGCCACAGTTTACGGTAGAACAACTACGTGAg                                                                                                                                                             <  2:835537/239‑1 (MQ=255)
                                                                           tGCACTACCGCTAACGCCGAAGAGTATTATTT‑CGACCCCATTATGCTGGAAACCAC‑AAAAAGTGGTATGCAAACAACCGATCTGT‑CGCGTTTTTCAAAAAAATATGCACAACTACCAGGAACTTATCAGGTTGATATCTGGCTGAATAAAAAGAAGGTTTCACAGAAAAAAATTACATTTACCGCCAATGCAGAGCAACTTCTGCAGCCACAGTTTACGGTAAAAAAAAAAAGTGAGcg                                                                                                                                                           >  2:468283/1‑238 (MQ=255)
                                                                           tGCACTACCGATAACGCGGAAGAGTATTATTT‑CGACCCCATTATGCTGGAAACCAA‑AAAAAGGGGTAGGCAAACAACCGATCGGT‑CGCGTTTTTAAAAAAAATATGCACAACTACGAGGAACTTATCAGTTTGATACCGGGCTGAAAAAAAAGAAGGTTTCACAGAAAAAAATTCCATTTACCGCCAATGCAGAGCAACTTCTGCAGCCACAGTTTACGGTAGAACAACTACGTGAGCt                                                                                                                                                           <  1:745587/239‑1 (MQ=255)
                                                                           gaccctccgcatAAAGCCGAAGAGTATTATTC‑CGACCCAATTATGCTGGAAACCAC‑AAAAAGTGGTATGCAAACAACCGATTTGT‑CGCGTTTTTCAAAAAAATATGCACAACTACAAGGACCTTATCAGGTTGATATCTGGCTGAATAAAAAGAAGGTTTCACAAAAAAAAATTACATTAACCGCCAATGCAGAGCAACTTCTGCAGCCACAGTTTACGGTAGAACAACTACGTGAGCt                                                                                                                                                           <  1:468283/228‑1 (MQ=255)
                                                                             cACTACCGCTAACGCCGAAGAGTATTATTT‑CGACCCCATTATGCTGGAAACCAC‑AAAAAGTGGTATGCAAACAACCGATCTGT‑CGCGTTTTTCAAAAAAATATGCACAACTACCAGGAACTTATCAGGTTGATATCTGGCTGAATAAAAAGAAGGTTTCACAGAAAAAAATTACATTTACCGCCAATGCAGAGCAACTTCTGCAGCCACAGTTTACGGTAGAACAACTACGTGAGCTgg                                                                                                                                                         >  1:781983/1‑239 (MQ=255)
                                                                             cACTACCGCTAACGCCGAAGAGTATTATTT‑CGACCCCATTATGCTGGAAACCAC‑AAAAAGTGGTATGCAAACAACCGATCTGT‑CGCGTTTTTCAAAAAAATATGCACAACTACCAGGAACTTATCAGGTTGATATCTGGCTGAATAAAAAGAAGGTTTCACAGAAAAAAATTACATTTACCGCCAATGCAGAGCAAATTCTGCAGCCACAGTTTACGGTAGAAAAACTACGTGACCTgg                                                                                                                                                         >  2:49356/1‑239 (MQ=255)
                                                                                  ccGCTAACGCCGAAGAGTATTATTT‑CGACCCCATTATGCTGGAAACCAC‑AAAAAGTGGTATGCAAACAACCGATCTGT‑CGCGTTTTTCAAAAAAATATGCACAACTACCAGGAACTTATCAGGTTGATATCTGGCTGAATAAAAAGAAGGTTTCACAGAAAAAAATTACATTTACCGCCCATGCAGAGCAACTTCTGCAGCCACAGTTTACGGAAGaacaaca                                                                                                                                                                    >  1:586512/1‑222 (MQ=255)
                                                                                  ccGCTAACGCCGAAGAGTATTATTT‑CGACCCCATTATGCTGGAAACCAC‑AAAAAGTGGTATGCAAACAACCGATCTGT‑CGCGTTTTTCAAAAAAATATGCACAACTACCAGGAACTTATCAGGTTGATATCTGGCTGAATAAAAAGAAGGTTTCACAGAAAAAAATTAAATTTACCGCCAATGCAGAGAAACTTCTGCAGCCACAGTTTACGGTAAAACAACTAAATGAGCgggggttt                                                                                                                                                    >  2:980908/1‑235 (MQ=255)
                                                                                  ccGCTAACGCCGAAGAGCATTATTT‑CGACCCCATTATGCTGGAAACCAC‑AAAAAGTGGTATGCAAACAACCGATCTGT‑CGCGTTTTTCAAAAAAATATGCACAACTACCAGGAACTTATCAGGTTGATATCTGGCTGAATAAAAAGAAGGTTTCACAGAAAAAAATTACATTTACCGCCAATGCAGAGCAACTTCTGCAGCCACAGTTTACGGTAGAACAACTACGTGAGCTGGGTAtt                                                                                                                                                    >  1:621587/1‑239 (MQ=255)
                                                                                       aaCGCCGAAGAGTATTATTT‑CGCCCCCATTATGCTGGAAACCAC‑AAAAAGTGGTATGCAAACAACCGATCTGT‑CGCGTTTTTCAAAAAAATATGCACAACTACCAGGAACTTATCAGGTTGGTATCTGGCTGAATAAAAAGAAGGTTTCACAGAAAAAAATTACATTTACCGCCAATTCAGACCCACTTCGGCAGCCAAAACTTACGGTAGAACAACAAACTGAGCTGGGGATTAAGGt                                                                                                                                               >  2:274020/1‑239 (MQ=255)
                                                                                              aaGAGTATTATTT‑CGACCCCATTATGCTGGAAACCAC‑AAAAAGTGGTATGCAAACAACCGATCTGT‑CGCGTTTTTCAAAAAAATATGCACAACTACCAGGAACTTATCAGGTTGATATCTGGCTGAATAAAAAGAAGGTTTCACAGAAAAAAATTACATTTACCGCCAATGCAGAGCAACTTCTGCAGCCACAGTTTACGGTAGAACAACTACGTGAGCTGGGTATTAAGGTGGATGaa                                                                                                                                        >  1:230612/1‑239 (MQ=255)
                                                                                                    attattC‑CGACCCCATTATGCTGGAAACCAC‑AAAAAGTGGTATGCAAACAACCGATCTGT‑CGCGTTTTTCAAAAAAATATGCACAACTACCAGGAACTTATCAGGTTGATATCTGGCTGAATAAAAAGAAGGTTTCACAGAAAAAAATTACATTTACCGCCAATGCAGAGCAACTTCTGCAGCCACAGTTTACGGTAAAACAACAACGTGAGCTGGGTATTAAGGTGGAGGAAAAccgg                                                                                                                                  >  2:667120/1‑237 (MQ=255)
                                                                                                     ttattT‑CGACCCCATTATGCTGGAAACCAC‑AAAAAGTGGTATGCAAACAACCGATCTGT‑CGCGTTTTTCAAAAAAATATGCACAACTACCAGGAACTTATCAGGTTGATATCTGGCTGAATAAAAAGAAGGTTTCACAGAAAAAAATTACATTTACCGCCAATGCAGAGCAACTTCTGCAGCCACAGTTTACGGTAGAACAACTACGTGAGCTGGGAATTAAGGTGGATGAAATCCCg                                                                                                                                  >  1:166130/1‑238 (MQ=255)
                                                                                                      tattT‑CGACCCCATTATGCTGGAAACCAC‑AAAAAGTGGTATGCAAACAACCGATCTGT‑CGCGTTTTTCAAAAAAATATGCACAACTACCAGGAACTTATCAGGTTGATATCTGGCTGAATAAAAAGAAGGTTTCCCAGAAAAAAATTACATTTACCGCCAATGCAGAGCAACTTCTGCAGCCACAGTTTACGGTAGAACAACTACTTGAGCTGGGTATTAAGGTGGATGAAATCCCgg                                                                                                                                 >  1:514589/1‑238 (MQ=255)
                                                                                                        ttt‑CGACCCCATTATGCTGGAAACCAC‑AAAAAGTGGTATGCAAACAACCGATCTGT‑CGCGTTTTTCAAAAAAATATGCACAACTACCAGGAACTTATCAGGTTGATATCTGGCTGAATAAAAAGAAGGTTTCACAGAAAAAAATTACATTTACCGCCAATGCAGAGCAACTTATGCAGCCACAGTTTACGGTAGACCAACAACGTGAGCTGGATATTAAGGTGGATGAAATCCCGgccc                                                                                                                              >  1:878030/1‑237 (MQ=255)
                                                                                                            cGACCCCATTATGCTGGAAACCAC‑AAAAAGTGGTATGCAAACAACCGATCTGT‑CGCGTTTTTCAAAAAAATATGCACAACTACCAGGAACTTATCAGGTTGATATCTGGCTGAATAAAAAGAAGGTTTCACAGAAAAAAATTACATTTACCGCCAATGCAGAGCAACTTCTGCAGCCACAGTTTACGGTAGAACAACTACGTGAGCTGGGTCTTAAGGTGGATGAAATACCGGAgctgg                                                                                                                           >  1:10214/1‑239 (MQ=255)
                                                                                                            cGACCCCATTATGCTGGAAACCAC‑AAAAAGAGGTATGCAAACAACCGATCTGT‑CGCGTTTTTCAAAAAAATATGCACAACTACCAGGAACTTATCAGGTTGATATCTGGCTGAATAAAAAGACGGTTTCACAGAAAAAAATTACATTTACCGCCAATGCAGAGCAACTTCTGAAGCCACAGTTTACGGTAGAACAACTACGTGAGCTGGGTATTAAGATGGATGAAATCCCGGCgctg                                                                                                                            >  1:928887/1‑238 (MQ=255)
                                                                                                              aCCCCATTATGCTGGAAACCAC‑AAAAAGTTTTATGCAAACAACCGATCTGT‑CGCGTTTTTCAAAAAAATATGCACAACTACCAGGAACTTATCAGGTTGATATCTGGCTGAATAAAAAGAAGGGTTCACAGAAAAAAATTACATTTACCGCCAATGCAGAGCAACTTCTGAAGCCACAGTTTACGGTAGAACAACTACGTGAACTGGGTATTAAGGTGGATGCAATCCCGGCgcaggct                                                                                                                         >  1:895158/1‑239 (MQ=255)
                                                                                                              aCCCCATTATGCTGGAAACCAC‑AAAAAGTGGTATGCAAACAACCGATCTGT‑CGCGTTTTTCAAAAAAATATGCACAACTACCAGGAACTTATCAGGTTGATATCTGGCTGAATAAAAAGAAGGTTTCACAGAAAAAAATTACATTTACCGCCAATGCAGAGCAACTTCTGCAGCCACAGTTTACGGTAGaacaa                                                                                                                                                                      >  1:36147/1‑194 (MQ=255)
                                                                                                              aCCCCATTATGCTGGAAACCAC‑AAAAAGTGGTATGCAAACAACCGATCTGT‑CGCGTTTTTCAAAAAAATATGCACAACTACCAGGAACTTATCAGGTTGATATCTGGCTGAATAAAAAGAAGGTTTCACAGAAAAAAATTACATTTACCGCCAATGCAGAGCAACTTCTGCAGCCACAGTTTACGGTAGAACAACTACGTGAGCTGGGTATTCAGGTGGATGAAATCCCGGCgctggct                                                                                                                         >  1:185513/1‑239 (MQ=255)
                                                                                                              aCCCCATTATGCTGGAAACCAC‑AAAAAGTGGTATGCAAACAACCGATCTGT‑CGCGTTTTTCAAAAAAATATGCACAACTACCAGGAACTTATCAGGTTGATATCTGGCTGAATAAAAAGAAGGTTTCACAGAAAAAAATTACATTTACCGCCAATGCAGAGCAACTTCTGCAGCCACAGTTTACGGTAGAACAACTACGTGAGCTGGGTATTAAGGTGGATGAAATCCCGGCgctg                                                                                                                            >  1:1059485/1‑236 (MQ=255)
                                                                                                              aCCCCATTATGCTGGAAACCAC‑AAAAAGTGGTATGCAAACAACCGATCTGT‑CGCGTTTTTCAAAAAAATATGCACAACTACCAGGAACTTATCAGGTTGATATCTGGCTGAATAAAAAGAAGGTTTCACAGAAAAAAATTACATTTACCGCCAATGCAGAGCAACTTCTGCAGCCACAGTTTACGGTAGAACAACTACGTGAGCTGGGTATTAAGGTGGATGAAATCCCGGCcctggct                                                                                                                         >  1:644120/1‑239 (MQ=255)
                                                                                                              aCCCCATTATGCTGGAAACCAC‑AAAAAGTGGTATGCAAACAACCGATCTGT‑CGCGTTTTTCAAAAAAATATGCACAACTACCAGGAACTTATCAGGTTGATATCTGGCTGAATAAAAAGAAGGTTTCACAGAAAAAAATTACATTTACCGCCAATGCAGAGCAACTTCTGCAGCCACAGTTTACGGTAGAACAAATACGTGAGCTGGGTATTAAGGTGGAGGAAAAACCGgcgcgg                                                                                                                            >  2:393624/1‑234 (MQ=255)
                                                                                                              aCCCCATTATGCTGGAAACCAC‑AAAAAGTGGTATGCAAACAACCGATCTGT‑CGCGTTTTTCAAAAAAATATGCACAACTACCAGGAACTTATCAGGTTGATATCTGGCTGAATAAAAAGAAGGTTTCACAGAAAAAAATTACATTTACCGCCAATGCAGAGCAACTTCTGAAGCCACAGTTTACGGTAGAACAACTACGTGAGCTGGGTATTAAGGTGGATGAAATCCCGGCgctg                                                                                                                            >  1:615492/1‑236 (MQ=255)
                                                                                                              aCCCCATTATGCTGGAAACCAC‑AAAAAGTGGTATGCAAACAACCGATCTGT‑CGCGTTTTTCAAAAAAATATGCACAACTACCAGGAACTTATCAGGCTGATATCTGGCTGAATCAAAAGAAGGTTTCACAGAAAAAAATTACATTTACCGCCAATGCAGAGCa                                                                                                                                                                                                     >  1:336739/1‑163 (MQ=255)
                                                                                                                   aTTATGCTGGAAACCAC‑AAAAAGTGGTATGCAAACAACCGATCTGT‑CGCGTTTTTCAAAAAAATATGCACAACTACCAGGAACTTATCAGGTTGATATCTGGCTGAATAAAAAGAAGGTTTCACAGAAAAAAATTACATTTACCGCCAATGCAGAGCAACTTCTGCAGCCACAGTTTACGGTAGAACAACTACGTGAGCTGGGTATTAAGGTGGATGAAATCCCGGCGCTGGCTGaaaa                                                                                                                    >  1:823057/1‑239 (MQ=255)
                                                                                                                            gAAACCAC‑AAAAAGTGGTATGCAAACAACCGATCTGT‑CGCGTTTTTCAAAAAAATATGCACAACTACCAGGAACTTATCAGGTTGATATCTGGCTGAATAAAAAGAAGGTTTCACAGAAAAAAATTACATTTACCGCCAATGCAGAGCAACTTCTGCAGCCCCAGTTTACGGTAGAAAAACTACGTGAGCTGGGAATTAAGGGGGATGAAATCCCGGCCCTGGCTGAAAAAGagaccga                                                                                                           >  2:819435/1‑233 (MQ=255)
                                                                                                                            gAAACCAC‑AAAAAGTGGTATGCAAACAACCGATCTGT‑CGCGTTTTTCAAAAAAATATGCACAACTACCAGGAACTTATCAGGTTGATATCTGGCTGAATAAAAAGAAGGTTTCACAGAAAAAAATTACATTTACCGCCAATGCAGAGCAACTTCTGCAGCCACAGTTTACGGTAGAACAACTACGTGAGCTGGGTATTCAGGTGGATGAAATCCCGGCGCTGGCTGAAAAAGATGACGa                                                                                                           >  2:746676/1‑239 (MQ=255)
                                                                                                                            gAAACCAC‑AAAAAGTGGTATGCAAACAACCGATCTGT‑CGCGTTTTTCAAAAAAATATGCACAACTACCAGGAACTTATCAGGTTGATATCTGGCTGAATAAAAAGAAGGTTTCACAGAAAAAAATTACATTTACCGCCAATGCAGAGCAACTTCTGCAGCCACAGTTTACGGTAGAACAACTACGTGAGCTGGGTATTAAGGTGGAGGAAATCCCGGCGCTGGCTGAAAAAGAGGACGa                                                                                                           >  1:283558/1‑239 (MQ=255)
                                                                                                                            gAAACCAC‑AAAAAGTGGTATGCAAACAACCGATCTGT‑CGCGTTTTTCAAAAAAATATGCACAACTACCAGGAACTTATCAGGTTGATATCTGGCTGAATAAAAAGAAGGTTTCACAGAAAAAAATTACATTTACCGCCAATGCAGAGCAACTTCTGCAGCCACAGTTTACGGTAGAACAACTACGTGAGCTGGGGATTAAGGTGGATGAAATCCCGGCGCTGGCTGAAAAAAATGAGGa                                                                                                           >  2:388475/1‑239 (MQ=255)
                                                                                                                            gAAACCAAAAAAAAGGGGTAGGAAAACAACCGAGTTTG‑CGATTTTTTCAAAAAAATATGCAAAACTCCCAGAAACTTAGCAGGTTGATATCTGGCAAAAAAAAAAGAAGTTTCCAAAGAAAAAAATTAAGTTTACCGCCAATGCAGAGCAATTTCTGCAGCCACAGTTTACGGTAGAACAACTACGTGAGCTGGGTATTAAGGTGGATGAAATCCCGGCGCTGGCTGAAAAAGATGACg                                                                                                            <  2:284804/239‑1 (MQ=255)
                                                                                                                               aCCAA‑AAAAAGGGGTAAACAAACACCCGAT‑TGTGCGCTTTTTTAAAAAAAATATGCACAACTACCAGGAACTTAACAGTTTGATATCTGGCTGAATAAAAAGAAGGTTTCAAAGAAAAAAATTACATTTACCGCCAATGCAGAGCAACTTCTGCAGCCACAGTTTACGGTAGAACAACTACGTGAGCTGGGTATTAAGGTGGATGAAATCCCGGCGCTGGCTGAAAAAGATGACGATAg                                                                                                        <  1:1082341/239‑1 (MQ=255)
                                                                                                                                 cac‑aAAAAGTGGTATGCAAACAACCGATCTGT‑CGCGTTTTTCAAAAAAATATGCACAACTACCAGGAACTTATCAGGTTGATATCTGGCTGAATAAAAAGAAGGTTTCACAGAAAAAAATTACATTTACCGCCAATGCAGAGCAACTTCTGCAGCCACAGTTTACGGTAGAACAACTACGTGAGCTGGGTATTAAg                                                                                                                                                 >  1:381875/1‑196 (MQ=255)
                                                                                                                                       aaaGTGGTATGCAAACAACCGATCTGT‑CGCGTTTTTCAAAAAAATATGCACAACTACCAGGAACTTATCAGGTTGATATCTGGCTGAATAAAAAGAAGGTTTCACAGAAAAAAATTACATTTACCGCCAATGCAGAGCAACTTCTGCAGCCACAGTTTACGGTAGAACAACTACGTGAGCTGGGTATTAAGGTGGATGAAATCCCGGCGCTGGCTGAAAAAGATGACGATAGCGTGATc                                                                                                 >  1:215709/1‑239 (MQ=255)
                                                                                                                                                   aaaCAACCGTTCTGG‑CGGGTTTCAAAAAAAAATAGGCAAAACTGACAGAAACTTATAGGGTGAATATCTGGATGAATAAAAAGAAGGTTTCAAAAAAAAAAATTACATTAACCGCCAATGCAGAGCAACTTCTGCAGCCACAGTTTACGGTAGAACAACTACGTGAGCTGGGTATTAAGGTGGATGAAATCCCGGCGCTGGCTGAAAAAGATGACGATAGCGTGATCAACTCGCTTGaa                                                                                     <  1:446648/239‑1 (MQ=255)
                                                                                                                                                     acaacCGATCTGT‑CGCGTTTTTCAAAAAAATATGCACAACTACCAGGAACTTATCAGGTTGATATCTGGCTGAATAAAAAGAAGGTTTCACAGAAAAAAATTACATTTACCGCCAATGCAGAGCAACTTCTGCAGCCACAGTTTACGGTAGAACAACTACGTGAGCTGGGTATTAAGGTGGATGAAATCCCGGCGCTGGCTGAAAAAGATGACGATAGCGTGTTCAACTCGCTTGAACa                                                                                   >  1:762661/1‑239 (MQ=255)
                                                                                                                                                     acaacCGATCTGT‑CGCGTTTTTCAAAAAAATATGCACAACTACCAGGAACTTATCAGGTTGATATCTGGCTGAATAAAAAGAAGGTTTCACAGAAAAAAATTACATTTACCGCCAATGCAGAGCAACTTCTGCAGCCACAGTTTACGGTAGAACAACTACGTGAGCTGGGTATTAAGGTGGATGAAATCCCGGCGCTGGCTGAAAAAGATGACGATAGCGTGTTCAACTCGCTTGAACa                                                                                   >  1:318278/1‑239 (MQ=255)
                                                                                                                                                              cTGT‑CGCGTTTTTCAAAAAAATATGCACAACTACCAGGAACTTATCAGGTTGATATCTGGCTGAATAAAAAGAAGGTTTCACAGAAAAAAATTACATTTACCGCCAATGCAGAGCAACTTCTGCAGCCACAGTTTACGGTAGAACAACTACGTGAGCTGGGTATTAAGGTGGATGAAATCCCGGCGCTGGCTGAAAAAGATGACGATAGCGTGATCAACTCGCTTGAACAAATCATTc                                                                           >  1:659511/1‑238 (MQ=255)
                                                                                                                                                                    gcgTTTTTCAAAAAAATATGCACAACTACCAGGAACTTATCAGGTTGATATCTGGCTGAATAAAAAGAAGGTTTCACAGAAAAAAATTACATTTACCGCCAATGCAGAGCAACTTCTGCAGCCACAGTTTACGGTAGAACAACTACGTGAGCTGGGTATTAAGGTGGATGAAATCCCGGCGCTGGCTGAAAAAGATGACGCAAGCGTGATCAACTCGCTTGAACAAATCATTCCCGGTa                                                                     >  1:861044/1‑239 (MQ=255)
                                                                                                                                                                        tttaaaaaaaaaTATGCCCAACACCCAGAAACTTAACAGGTTGATATCTGGCTAAAAAAAAAGAAGGTTTCACAAAAAAAAATTACATTTACCGCCAATGCAGAGCAACTTCTGCAGCCACAGTTTACGGTAGAACAACTACGTGAGCTGGGTATTAAGGTGGATGAAATCCCGGCGCTGGCTGAAAAAGATGACGATAGCGTGATCAACTCGCTTGAACAAATCATTCCCGGTACAgc                                                                 <  1:667120/234‑1 (MQ=255)
                                                                                                                                                                                  aaTATACAAAAATACAAGAAACTTATTAGGTGAATATCGGGCTAAATAAAAAGAAGGTTACAAAAAAAAAAATTACATTTACCGCCAATGCAGAGCAACTTCTGCAGCCACAGTTTACGGTAGAACAACTACGTGAGCTGGGTATTAAGGTGGATGAAATCCCGGCGCTGGCTGAAAAAGATGACGATAGCGTGATCAACTCGCTTGAACAAATCATTCCCGGTACAGCTGCTGAAttt                                                       <  2:823057/239‑1 (MQ=255)
                                                                                                                                                                                             cTACCAGGAACTTATCAGGTTGATATCTGGCTGAATAAAAAGAAGGTTTCACAGAAAAAAATTACATTTACCGCCAATGCAGAGCAACTTCTGCAGCCACAGTTTACGGTAGAACAACTACGTGAGCTGGGTATTAAGGTGGATGAAATCCCGGCGCTGGCTGAAAAAGATGACGATAGCGTGATCAACTCGCTTGAACAAATAATTCCCGGTACAGCTGCTGAATTTAATTTAAataa                                            >  2:400722/1‑237 (MQ=255)
                                                                                                                                                                                                   ggAACTTATCAGGTTGATATCTGGCTGAATAAAAAGAAGGTTTCACAGAAAAAAATTACATTTACCGCCAATGCAGAGCAACTTCTGCAGCCACAGTTTACGGTAGAACAACTACGTGAGCTGGGAATTAAGGTGGATGAAATCCCGGCGCTGGCTGAAAAAGATGACGATAGCGTGATCAACTCGCTTTAAAAAATCATTCCCGGTACAGCTGCTGAATTTGATTTCAatcacaacca                                      >  2:358303/1‑233 (MQ=255)
                                                                                                                                                                                                     aattttaatggTTTATTTTTGGCTAAAAAAAAAGAAGGTTTCACAAAAAAAAATTCAATTCACCGCCAATGCAGAGCAACTTCTGAAGGCACAGTTTACGGTAGAACAACTACGTGAGCTGGGTATTAAGGTGGATGAAATCCCGGCGCTGGCTGAAAAAGATGACGATAGCGTGATCAACTCGCTTGAACAAATCATTCCCGGTACAGCTGCTGAATTTGATTTCAATCATCAGc                                       <  2:944889/227‑1 (MQ=255)
                                                                                                                                                                                                     aaCTTATCAGGTTGATATCTGGCTGAATAAAAAGAAGGTTTCACAGAAAAAAATTACATTTACCGCCAATGCAGAGCAACTTCTGCAGCCACAGTTTACGGTAGAACAACTACGTGAGCTGGGTATTAAGGTGGATGAAATCCCGGCGCTGGCTGAAAAAGATGACGATAGCGTGATCAACTCGCTTGAACAAATCATTCCCGGTACAGCTGCTGAATTTGATTTCAATCATCAGCa                                      >  1:783073/1‑237 (MQ=255)
                                                                                                                                                                                                     aaCTTATCAGGTTGATATCTGGCTGAATAAAAAGAAGGTTTCACAGAAAAAAATTACATTTACCGCCAATGCAGAGCAACTTCTGCAGCCACAGTTTACGGTAGAACAACTACGTGAGCTGGGTATTAAGGTGGATGAAATCCCGGCGCTGGCTGAAAAAGATGACGATAGCGTGATCAACTCGCTTGAACAAATCATTCCCGGTACAGCTGCTGAATTTGATTTCAATCATAAGCa                                      >  1:944889/1‑237 (MQ=255)
                                                                                                                                                                                                       cTTATCAGGTTGATATCTGGCTGAATAAAAAGAAGGTTTCACAGAAAAAAATTACATTTACCGCCAATGCAGAGCAACTTCTGCAGCCACAGTTTACGGTAGAACAACTACGTGAGCTGGGTATTAAGGTGGATGAAATCCCGGCGCTGGCTGAAAAAGATGACGATAGCGGGATCAACTCGCTTGAACAAAACATTCCCGGGACAACTGCTTAATTTGATTTAAATAATCAGAAACta                                  >  2:570667/1‑238 (MQ=255)
                                                                                                                                                                                                          aTCAGGTTGATATCTGGCTGAATAAAAAGAAGGTTTCACAGAAAAAAATTACATTTACCGCCAATGCAGAGCAACTTCTGCAGCCACAGTTTACGGTAGAACAACTACGTGAGCTGGGTATTAAGGTGGATGAAATCCCGGCGCTGGCTGAAAAAGATGACGATAGCGTGATCAACTCGCTTTAACAAATCATTCCCGGTACAGCTGCTGAATTTTATTTAAATCAACAACAAATTAAt                               >  2:493869/1‑239 (MQ=255)
                                                                                                                                                                                                          aTCAGGTTGATATCTGGCTGAATAAAAAGAAGGTTTCACAGAAAAAAATTACATTTACCGCCAATGCAGAGCAACTTCTGCAGCCACAGTTTACGGTAGAACAACTACGTGAGCTGGGTATTAAGGTGGATGAAATCCCGGCGCTGGCTGAAAAAGATGACGATAGCGTGATCAACTCGCTTGACCAAATCCTTCCCCGTACAGCTGCTGAATTTGATTTCCATCTTAAGAAACTTaaa                               >  2:970744/1‑238 (MQ=255)
                                                                                                                                                                                                          aTCAGGTTGATATCTGGCTGAATAAAAAGAAGGTTTCACAGAAAAAAATTACATTTACCGCCAATGCAGAGCAACTTCTGCAGCCACAGTTTACGGTAGAACAACTACGTGAGCTGGGTATTAAGGTGGATGAAATCCCGGCGCTGGCTGAAAAAGATGACGATAGCGTGATCAACTCGCTTGAACAAATCATTCCCGGTACAGCTGCTGAATTTGATTTCAATCATCAGTAACTTAAt                               >  1:800632/1‑239 (MQ=255)
                                                                                                                                                                                                          aTCAGGTTGATATCTGGCTGAATAAAAAGAAGGTTTCACAGAAAAAAATTACATTTACCGCCAATGCAGAGCAACTTCTGCAGCCACAGTTTACGGTAGAACAACTACGTGAGCTGGGTATTAAGGTGGATGAAATCCCGGCGCTGGCTGAAAAAGATGACGATAGCGTGATCAACTCGCTTGAACAAATCATTCCCGGTACAGCTGCTGAATTTGATTTCAATCATCAGCAACTTAAt                               >  1:289530/1‑239 (MQ=255)
                                                                                                                                                                                                          aTCAGGTTGATATCTGGCTGAATAAAAAGAAGGTTTCACAGAAAAAAATTACATTTACCGCCAATGCAGAGCAACTTCTGCAGCCACAGTTTACGGTAGAACAACTACGTGAGCTGGGTATTAAGGTGGATGAAATCCCGGCGCTGGCTGAAAAAGATGACGATAGCGTGATCAACTCGCTTGAACAAATCATTCCCGGTACAGCTGCTGAATTTGATTTCAATCATAAACAACTTAAt                               >  2:545618/1‑239 (MQ=255)
                                                                                                                                                                                                          aTCAGGTTGATATCTGGCTGAATAAAAAGAAGGTTTCACAGAAAAAAATTACATTTACCGCCAATGCAGAGCAACTTCTGCAGCCACAGTTTACGGTAGAACAACTACGTGAGCTGGGGATTAAGGTGGATGAAATCCCGGCGCTGGCTGAAAAAGATGACGATAACGTGATCAACTCGCTTGAACAAATCATTCCCGGTACCACTACTGAATTTGATTTAAATCATAAGCAACTTAAt                               >  1:1007190/1‑239 (MQ=255)
                                                                                                                                                                                                          aTCAGGGTGATATCTGGCGGAATAAAAAGAAGGTTTAACAGAAAAAAATTACATTTACCGCCAATGCAGAGCAACTTCTGCAGCCACAGGTTACGGTAGAACAACTACGTGAGCTGGGTATTAAGGTGGATGAAATCCCGGCGCTGGCTGAAAAAGATGACGATAGCGTGATCAACTCGCTTGAACAAATCATTCCAGGTACAGCTCCTGACTTTGATTTAAATCATCAGCAATTTAAt                               >  1:573977/1‑239 (MQ=255)
                                                                                                                                                                                                               gTTGATATCTGGCTGAATAAAAAGAAGGTTTCACAGAAAAAAATTACATTTACCGCCAATGCAGAGCAACTTCTGCAGCCACAGTTTACGGTAGAACAACTACGTGAGCTGGGTATTAAGTTGGATGAAATCCCGGCGCTGGCTGAAAAAGATGCCGATAGCGTGTTCAAATCGCTTGAACAAATCATTCCCGGTACAGCTGCTGAATTTGATTTCAACCATCAGCACCTTAATTTgt                           >  1:530894/1‑237 (MQ=255)
                                                                                                                                                                                                               gTTGATATCTGGCTGAATAAAAAGAAGGTTTCACAGAAAAAAATTACATTTACCGCCAATGCAGAGCAACTTCTGCAGCCACAGTTTACGGTAGAACAACTACGTGAGCTGGGTATTAAGGTGGATGAAATCCGGGCGCTGGCTGAAAAAGATGACGAAAGCGTGATCAACTCGCTTGAACAATCCATTCCCGGTACAGTTGCTGAATTTGATTTCAATCATCAGAAACTTAATTTGAg                          >  1:1075165/1‑239 (MQ=255)
                                                                                                                                                                                                                 tgattgcTGGGTAAAAAAAAAGAAGTTGTCAAAAAAAAAATTTAATTTTACCGCCAAGGCAGAGCAACTTCTGCAGCCGCAGTTTACGGTAGAACAACTACGTGAGCTGGGTATTAAGGTGGATGAAATCCCGGCGCTGGCTGAAAAAGATGACGATAGCGTGATCAACTCGCTTGAACAAATCATTCCCGGTACAGCTGCTGAATTTGATTTCAATCATCAGCAGCTTAATTTGAGCa                        <  2:1080275/233‑1 (MQ=255)
                                                                                                                                                                                                                  gATATCTGGCTGAATAAAAAGAAGGTTTCACAGAAAAAAATTACATTTACCGCCAATGCAGAGCAACTTCTGCAGCCACAGTTTACGGTAGAACAACTACGTGAGCTGGGTATTAAGGTGGATGAAATCCCGGCGCTGGCTGAAAAAGATGACGATAGCGTGATCAACTCGCTTGAACAAATCATTCCCGGTACAGCTGCTGAATTTGATTTCAATCATCAGCAACTTAATTTGAGCa                        >  1:61394/1‑238 (MQ=255)
                                                                                                                                                                                                                  gATATCTGGCTGAATAAAAAGAAGGTTTCACAGAAAAAAATTACATTTACCGCCAATGCAGAGCAACTTCTGCAGCCACAGTTTACGGTAGAACAACTACGTGAGCTGGGTATTAAGGTGGATGAAATCCCGGCGCTGGCTGAAAAAGATGACGATAGCGTGATCAACTCGCTTGAACAAATCATTCCCGGTACAGCTGCTGAATTTGATTTCAATCATCAGCAACTTAATTTGAGCAt                       >  1:299691/1‑239 (MQ=255)
                                                                                                                                                                                                                  gATATCTGGCTGAATAAAAAGAAGGTTTCACAGAAAAAAATTACATTTACCGCCAATGCAGAGCAACTTCTGCAGCCACAGTTTACGGTAGAACAACTACGTGAGCTGGGTATTAAGGTGGATGAAATCCCGGCGCTGGCTGAAAAAGATGACGATAGCGTGATCAACTCGCTTGAACAAATCATTCCCGGTACAGCTGCTGAATTTGATTTCAATAATAAGAAACTTAATTTGAGAAt                       >  2:347951/1‑239 (MQ=255)
                                                                                                                                                                                                                  gATATCTGGCTGAATAAAAAGAAGGTTTCACAGAAAAAAATTACATTTACCGCCAATGCAGAGCAACTTCTGCAGCCACAGTTTACGGTAGAACAACTACGTGAGCTGGGTATTAAGGTGGATGAAATCCCGGCGCTGGCTGAAAAAGATGACGATAGCGTGATCAACTCGCTTGAAAAAATCATTCCCGGTACAGCTGCTGAATTTGATTTAAATCATAAACAACTTAATTTGAGAAt                       >  2:475864/1‑239 (MQ=255)
                                                                                                                                                                                                                      ttcgcagaaaTAAAAAAGAGTCTTCACAAAAAAAAATTGACTTCACCGTCAATGCAGAGCAACTTTTGCAGCCACAATTTACGGTAGAACAACTACGTGAGCTGGGTATTAAGGTGGATGAAATCCCGGCGCTGGCTGAAAAAGATGACGATAGCGTGATCAACTCGCTTGAACAAATCATTCCCGGTACAGCTGCTGAATTTGATTTCAATCATCAGCAACTTAATTTGAGCATTcc                    <  1:729455/230‑1 (MQ=255)
                                                                                                                                                                                                                         ggCTGAATAAAAAGAAGGTTTCACAGAAAAAAATTACATTTACCGCCAATGCAGAGCAACTTCTGCAGCCACAGTTTACGGTAGAACAACTACGTGAGCTGGGTATTAAGGTGGATGAAATCCCGgcg                                                                                                                               <  1:48892/128‑1 (MQ=255)
                                                                                                                                                                                                                         ggCTGAATAAAAAGAAGGTTTCACAGAAAAAAATTACATTTACCGCCAATGCAGAGCAACTTCTGCAGCCACAGTTTACGGTAGAACAACTACGTGAGCTGGGTATTAAGGTGGATGAAATCCCGgcg                                                                                                                               >  2:48892/1‑128 (MQ=255)
                                                                                                                                                                                                                         ggCTGAATAAAAAGAAGGTTTCACAGAAAAAAATTACATTTACCGCCAATGCAGAGCAACTTCTGCAGCCACAGTTTACGGTAGAACAACTACGTGAGCTGGGTATTAAGGTGGATGAAATCCCGGCGCTGGCTGAAAAAGATGACGATAGCGTGATCAACTCGCTTGAACAAATCATTCCCGGTACAgct                                                                >  1:461654/1‑191 (MQ=255)
                                                                                                                                                                                                                          gCTGAATAAAAAGAAGGTTTCACAGAAAAAAATTACATTTACCGCCAATGCAGAGCAACTTCTGCAGCCACAGTTTACGGTAGAACAACTACGTGAGCTGGGTATTAAGGTGGATGAAATCCCGGCGCTGGCTGAAAAAGATGACGATAGCGTGATCAACTCGCTTGAACAAATCATTCCCGGTACAGCTGCTGAATTTGATTTCAATCATCAGCAACTTAATTTGAGCATTCCCCaaa               >  1:661161/1‑239 (MQ=255)
                                                                                                                                                                                                                          gCTAAATAAAAAAAGGGTTTCAAAAAAAAAATTTACATTCACCGCCAATGCAGAGCAACTTCTGCAGCCACAGTTTACGGTAGAACAACTACGTGAGCTGGGTATTAAGGTGGATGAAATCCCGGCGCTGGCTGAAAAAGATGACGATAGCGTGATCAACTCGCTTGAACAAATCATTCCCGGTACAGCTGCTGAATTTGATTTCAATCATCAGCAACTTAATTTGAGCATTCCCCaaa               <  1:393624/239‑1 (MQ=255)
                                                                                                                                                                                                                           ctaaaaaaaaaGAAGGTTCCAAAAAAAAAAATTACATTTACCGCCAATGCAGAGCAACTTCTGCAGCCACAGTTTACGGTAGAACAACTACGTGAGCTGGGTATTAAGGTGGATGAAATCCCGGCGCTGGCTGAAAAAGATGACGATAGCGTGATCAACTCGCTTGAACAAATCATTCCCGGTACAGCTGCTGAATTTGATTTCAATCATCAGCAACTTAATTTGAGCATTCCCCaaa               <  1:388475/232‑1 (MQ=255)
                                                                                                                                                                                                                           caaaaaaaaaaGAAGCTTCCAAAGAAAAAAAGTACATTTACCGCCAAGTCAGAGCAAATTCTGCAGCCACAGTTTACGGTAGAACAACTACGTGAGCTGGGTATTAAGGTGGATGAAATCCCGGCGCTGGCTGAAAAAGATGACGATAGCGTGATCAACTCGCTTGAACAAATCATTCCCGGTACAGCTGCTGAATTTGATTTCAATCATCAGCAACTTAATTTGAGCATTCCCCaaa               <  1:1030054/232‑1 (MQ=255)
                                                                                                                                                                                                                           aaaaaaaaaaaGAAGGTTACAAAAAAAAAAATTACATTTCCCGCCAATGCAGAGCAACTTCTGCAGCCACAGTTTACGGTAGAACAACTACGTGAGCTGGGTATTAAGGTGGATGAAATCCCGGCGCTGGCTGAAAAAGATGACGATAGCGTGATCAACTCGCTTGAACAAATCATTCCCGGTACAGCTGCTGAATTTGATTTCAATCATCAGCAACTTAATTTGAGCATTCCCCaaa               <  2:661161/232‑1 (MQ=255)
                                                                                                                                                                                                                            taaaaaaaagGAAGTTTTCAAAAAAAAAAATTACATTTACCGCCAATGCAGAGCAACTTCTGCAGCCACAGTTTACGGTAGAACAACTACGTGAGCTGGGTATTAAGGTGGATGAAATCCCGGCGCTGGCTGAAAAAGATGACGATAGCGTGATCAACTCGCTTGAACAAATCATTCCCGGTACAGCTGCTGAATTTGATTTCAATCATCAGCAACTTAATTTGAGCATTCCCCAAAtt             <  2:230612/234‑1 (MQ=255)
                                                                                                                                                                                                                             aaaaaaaaaGAATGTTCAAAAAAAAAAATTTCCTTTTCCCCCCCATGCAAGTCAACTTCTGCAGCCGCGGTTTACGGTAGAACAACTACGTGAGCTGGGTATTAAGGTGGATGAAATCCCGGCGCTGGCTGAAAAAGATGACGATAGCGTGATCAACTCGCTTGAACAAATCATTCCCGGTACAGCTACTGAATTTGATTTCAATCATCAGCAACTTAATTTGAGCATTCCCCAAATTg            <  2:615492/235‑1 (MQ=255)
                                                                                                                                                                                                                              aaTAAAAAGAAGGTTTCACAGAAAAAAATTACATTTACCGCCAATGCAGAGCAACTTCTGCAGCCACAGTTTACGGTAGAACAACTACGTGAGCTGGGTATTAAGGTGGATGAAATCCCGGCGCTGGCTGAAAAAGATGACGATAGCGTGATCAACTCGCTTGAACAAATCATTCCCGGTACAGCTGCTGAATTTGATTTCAATCATCAGCAACTTAATTTGAGCATTCCCCAAATTGc           >  1:79411/1‑239 (MQ=255)
                                                                                                                                                                                                                               aaaaaaaaaaTGTTTCCAAAAAAAAAATTACTTTATCCGCCAATGCAGAGCAACTTCTGCAGCCACAGTTTACGGTAGAACAACTACGTGAGCTGGGTATTAAGGTGGATGAAATCCCGGCGCTGGCTGAAAAAGATGACGATAGCGTGATCAACTCGCTTGAACAAATCATTCCCGGTACAGCTGCTGAATTTGATTTCAATCATCAGCAACTTAATTTGAGCATTCCCCAAATTGCa          <  1:968643/237‑1 (MQ=255)
                                                                                                                                                                                                                               aaaaaaaaaaGTTTCCAAAAAAAAAAATTACTTTACCCGCCAATGCAGAGCAACTTCTGCAGCCACAGTTTACGGTAGAACAACGACGTGAGCTGGGTATTAAGGTGGATGAAATCCCGGCGCTGGCTGAAAAAGATGACGATAGCGTGATCAACTCGCTTGAACAAATCATTCCCGGTACAGCTGCTGAATTTGATTTCAATCATCAGCAACTTAATTTGAGCATTCCCCAAATTGCa          <  2:166130/237‑1 (MQ=255)
                                                                                                                                                                                                                               aaaaaaaaGAGTTTTCAAAAAAAAAAATTAATTTAACCGGCAATGCAGGGCAACTTCTGCAGCCACAGTTTACGGTAGAACAACTACGTGAGCTGGGTATTAAGGTGGATGAAATCCCGGCGCTGGCTGAAAAAGATGACGATAGCGTGATCAACTCGCTTGAACAAATCATTCCCGGTACAGCTGCTGAATTTGATTTCAATCATCAGCAACTTAATTTGAGCATTCCCCAAATTGCa          <  2:259521/237‑1 (MQ=255)
                                                                                                                                                                                                                               aaaaaaaGTAGGTTTCAAAAAAAAAAATTACATTCCCCGCCAATGCAGAGCAACTTCTGCAGCCACAGTTTACGGTAGAACAACTACGTGAGCTGGGTATTAAGGTGGATGAAATCCCGGCGCTGGCTGAAAAAGATGACGATAGCGTGATCAACTCGCTTGAACAAATCATTCCCGGTACAGCTGCTGAATTTGATTTCAATCATCAGCAACTTAATTTGAGCATTCCCCAAATTGCa          <  2:762661/237‑1 (MQ=255)
                                                                                                                                                                                                                               aTAAAAAGAAGGTTTCACAGAAAAAAATTACATTTACCGCCAATGCAGAGCAACTTCTGCAGCCACAGTTTACGGTAGAACAACTACGTGAGCTGGGTATTAAGGTGGATGAAATCCCGGCGCTGGCTGAAAAAGATGACGATAGCGTGATCAACTCGCTTGAACAAATCATTCCCGGTACAGCTGCTGAATTTGATTTCAATCATCAGCAACTTAATTTGAGCATTCCCCAAATTGCa          <  1:347951/239‑1 (MQ=255)
                                                                                                                                                                                                                                    aagaagGTTTCACAGAAAAAAATTACATTTACCGCCAATGCAGAGCAACTTCTGCAGCCACAGTTTACGGTAGAACAACTACGTGAGCTGGGTATTAAGGAGGATGAAATCCCGGCGCTGGCTGAAAAAGATGACGAGAGCGTGATCAACTCGCTTGAACAAATCATTCCCGGTACAGCTGCTGAATTTGATTTCAATCATCAGCAACTTAATTTGAGCATTCCCCAAATTGCACTGt      >  1:815319/1‑238 (MQ=255)
                                                                                                                                                                                                                                       aagGTTTCAAAAAAAAAAATTAAATTTACCGCCAATGCATGGCAACTACTGCAGCCACAATTTACGGTAGAACAACTACGTGAGCTGGGTATTAAGGTGGATGAAATCCCGGCGCTGGCTGAAAAAGATGACGATAGCGTGATCAACTCGCTTGAACAAATCATTCCCGGTACAGCTGCTGAATTTGATTTCAATCATCAGCAACTTAATTTGAGCATTCCCCAAATTGCACTGTACCg  <  1:475864/239‑1 (MQ=255)
                                                                                                                                                                                                                                                |                                                                                                                                                                                                                                     
AAACGCACACCGAAACAGTTGGCGCTCATCATCAAACGTTGTTTGCCGATGGTGCTCACTGGCAGCGGCATGCTTTGCACTACCGCTAACGCCGAAGAGTATTATTT‑CGACCCCATTATGCTGGAAACCAC‑AAAAAGTGGTATGCAAACAACCGATCTGT‑CGCGTTTTTCAAAAAAATATGCACAACTACCAGGAACTTATCAGGTTGATATCTGGCTGAATAAAAAGAAGGTTTCACAGAAAAAAATTACATTTACCGCCAATGCAGAGCAACTTCTGCAGCCACAGTTTACGGTAGAACAACTACGTGAGCTGGGTATTAAGGTGGATGAAATCCCGGCGCTGGCTGAAAAAGATGACGATAGCGTGATCAACTCGCTTGAACAAATCATTCCCGGTACAGCTGCTGAATTTGATTTCAATCATCAGCAACTTAATTTGAGCATTCCCCAAATTGCACTGTACCG  >  NC_000913/3288841‑3289307

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A