Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A7 F28 I0 R1
|
91 |
172.1 |
3477528 |
97.2% |
3380157 |
226.2 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NC_000913 |
1,504,667 |
T→G |
21.9% |
C317W (TGT→TGG) |
insQ → |
IS609 transposase B |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 1,504,667 | 0 | T | G | 21.9%
| 87.3
/ 3.4
| 47 | C317W (TGT→TGG) | insQ | IS609 transposase B |
| Reads supporting (aligned to +/- strand): ref base T (23/13); new base G (3/8); total (26/21) |
| Fisher's exact test for biased strand distribution p-value = 4.33e-02 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
CCACGCAATGATAGTCATTGAGGATTTGAAGGTCAGCAACATGTCAAAGTCAGCAGCGGGTACGG‑TCAGCCAGCCGGGGCGCAATGTCCGGGCA‑AAATCAGGTTTAAACCGTTCGATACTGGATCAGGGCTGGTATGAAATGCGCCGCCAGCTTGCGTATAAGCAGCTCTGGCGTGGCGGTCAGGTGCTTGCTGTTCCGCCAGCGTATACAAGCCAG‑CGTTGCGCGTACTGTGGTCATACAGCGAAAGAGAACCGCCTGTCACAAAGTAAATTCAGATGCCAGGTATGTGGATATACAGCGAACGCCGATGTAAATGGCGCTCGCAACATTTTAGCGGCGGGGCACGCCGTTCTTGCCTGTGGAGAGATGGTGCAGTCAGGCCGCCCGTTGAAGCAGGAACCCACCGAAATGATTCAGGCGACAGCCTGAACGTAGCAGGGATCCACGTCCTTCAGGGCGTGGAGG > NC_000913/1504436‑1504901
|
ccACGCAATGATAGTCATTGAGGATTTGAAGGTCAGCAACATGTCAAAGTCAGCAGCGGGTACGG‑TCAGCCAGCCGGGGCGCAATGTCCGGGCA‑AAATCAGGTTTAAACCGTTCGATACTGGATCAGGGCTGGTATGAAATGCGCCGCCAGCTTGCGTATAAGCAGCTCTGGCGTGGCGGTCAGGTGCTTGCTGTTCCGCCAGCGTATACAAGCCAG‑CGTTGCGCGTACTGTGGTCATa < 1:436368/239‑1 (MQ=255)
cGCAATGATAGTCATGGAGGATTTGAAGGGCGGCAACATGGCAAAGTCAGAAGCGGGTACGG‑TCAGCCAGCCGGGGCGCAATGTCCGGGCA‑AAATCAGGTGTAAACCGTTCGATACTGGATCAGGGCTGGTAGGAAATGCGCCGCCAGCTTGCGTATAAGCAGCTCTGGCGTGGCGGTCAGGTGCTTGCTGTTCCGCCAGCGTATACAAGCCAG‑CGTTGCGCGTACTGTGGTCATACAg < 2:1688504/239‑1 (MQ=255)
cGCAATGATAGACATTGAGGATTTGAAGGTCAGCAACATGTCAAAGTCAGCAGCGGGTACGG‑TCAGCCAGCCGGGGCGCAATGTCCGGGCA‑AAATCAGGTTTAAACCGTTCGATACTGGATCAGGGCTGGTATGAAATGCGCCGCCAGCTTGCGTATAAGCAGCTCTGGCGTGGCGGTCAGGTGCTTGCTGTTCCGCCAGCGTATACAAGCCAG‑CGTTGCGCGTACTGTGGTCATACAg < 2:167840/239‑1 (MQ=255)
cGCAATGAGAGTCATTAAGGATTAGAAGGTCAGGAACATGTCAAAGTCAGCAGCGGGTACGG‑TCAGCCAGCCGGGGCGCAATGTCCGGGCA‑AAATCAGGTTTAAACCGTTCGATACTGGATCAGGGCTGGTATGAAATGCGCCGCCAGCTTGCGTATAAGCAGCTCTGGCGTGGCGGTCAGGTGCTTGCTGTTCCGCCAGCGTATACAAGCCAG‑CGTTGCGCGTACTGTGGTCATACAg < 2:798640/239‑1 (MQ=255)
tGAGGATTTGAAGGTCAGCAACATGTCAAAGTCAGCAGCGGGTACGG‑TCAGCCAGCCGGGGCGCAATGTCCGGGCA‑AAATCAGGTTTAAACCGTTCGATACTGGATCAGGGCTGGTATGAAATGCGCCGCCAGCTTGCGTATAAGCAGCTCTGGCGTGGCGGTCAGGTGCTTGCTGTTCCGCCAGCGTATACCAGCCAG‑CGTTGCGCGTACTTTGGGCATACAGCGAAAGAGAACCGc > 2:879037/1‑238 (MQ=255)
ttGAAGGTCAGCAACATGTCAAAGTCAGCAGCGGGTACGG‑TCAGCCAGCCGGGGCGCAATGTCCGGGCA‑AAATCAGGTTTAAACCGTTCGATACTGGATCAGGGCTGGTATGAAATGCGCCGCCAGCTTGCGTATAAGCAGCTCTGGCGTGGCGGTCAGGTGCTTGCTGTTCCGCCAGCGTATACAAGCCAG‑CGTTGCGCGTACTGTGGGCCTACAGCGAAAGAGAACCGCCTGTcaca > 1:984881/1‑239 (MQ=255)
gTCAGCAACATGTCAAAGTCAGCAGCGGGTACGG‑TCAGCCAGCCGGGGCGCAATGTCCGGGCA‑AAATCAGGTTTAAACCGTTCGATACTGGATCAGGGCTGGTATGAAATGCGCCGCCAGCTTGCGTATAAGCAGCTCTGGCGTGGCGGTCAGGTGCTTGCTGTTCCGCCAGCGTATACAAGCCAG‑CGTTGCGCGTACTGTGGTCATACAGCGAAAGAGAACCGCCTGTCACAAAGTaa > 1:891234/1‑239 (MQ=255)
cATGTCAAAGTCAGCAGCGGGTACGG‑TCAGCCAGCCGGGGCGCAATGTCCGGGCA‑AAATCAGGTTTAAACCGTTCGATACTGGATCAGGGCTGGTATGAAATGCGCCGCCAGCTTGCGTATAAGCAGCTCTGGCGTGGCGGTCAGGTGCTTGCTGGTCCGCCAGCGTATACAAGCCAG‑CGTTGTGCGTACTGGGGTCATACAGCGAAAGAGAAACGCCTGTCACAAAAGAAATTCAGAt > 1:912330/1‑239 (MQ=255)
tGTCAAAGTCAGCAGCGGGTACGG‑TCAGCCAGCCGGGGCGCAATGTCCGGGCA‑AAATCAGGTTTAAACCGTTCGATACTGGATCAGGGCTGGTATGAAATGCGCCGCCAGCTTGCGTATAAGCAGCTCTGGCGTGGCGGTCAGTGGCGTGCTGTTCCGCCCGCGTATACAAGCCAG‑CGTTGCGCGTACTGGGGTCATCAAGCAAAAGGGAAACGCCTGTCCCCAAGAAAAATCAAATg > 2:721603/1‑238 (MQ=255)
cAAAGTCAGCAGCGGGTACGG‑TCAGCCAGCCGGGGCGCAATGTCCGGGCA‑AAATCAGGTTTAAACCGTTCGATACTGGATCAGGGCTGGTATGAAATGCGCCGCCAGCTTGCGTATAAGCAGCTCTGGCTTGGCGGTCAGGGGCTTGCTGTTCCGCCAGCGTATACAAGCCAG‑GTTTGCGCGTACTGGGGTCATACAGCGAAAGGGAACCGCCTGTCCCAAAGTAAATTCAGATGCCAg > 1:735576/1‑239 (MQ=255)
aaaGGCAGCGGCGGGTAGGG‑TCAGCCGGCCGGGGGGAAAGGGCGGGGCA‑AAAGCGGGTTTAAACGGTTGGATACGGGATCGGGGCGGGGATGAAGTGCGCCGCCAGCTGGCGTATAAGCAGCTCGGGGGGGGGGGTGGGGTGCTTGCTGTTCCGCCAGCATATACAAGCCGG‑TGTTGCGAGTATTGTGTTCATACAGCGAAAGAGAACCGCCTGTCACAAAGTAAATTCAGATGCCAgg < 2:1562383/239‑1 (MQ=255)
aGTCAGGAGGGGGTACGG‑TCAGCCCGCCGGGGCGCAGTGTCGGGGAA‑AATACGGGTTTAACCGGTGCGATTGGGGATCGGGGCGGGTAGGAAATGCGCCGCCGGTTGGCGTATAAGCAGCTGTGGCGGGGGGGTCGGGTGTTGGCTGTCCCGCCAGGGTATACAAGCCGG‑CGTGGCGCGTATTGGGGTCATACAGCAAAAGAGAACCGCCTGTCACAAAGTAAATTCAGATGCCAGGTa < 2:472553/239‑1 (MQ=255)
cagcgggggTACGGCACAGCGCGCGGGGGCGCATTG‑CCGGGCACAAAGCGGTTTAAAACCTTTCGAGACGGGACGAGGGGTGGTATGAAGTGGGCCGCCGGCTTGCGTATAAGAGGCTGTGGCTTGGGGGTCGGGTGTTTGCTTTTCCGCCAGCGTATACAAGCCAG‑TGTTGCGCGTACTGTGGTAATAAAGCGAAAGAAAACCGCCTGTCACAAAGTAAATTCAGATGCCAGGTAtg < 2:657711/232‑1 (MQ=255)
acgccgcccGGGGAGCAATGGCCGGACA‑AATCCGGGTTTAACTCGTTCGATGGTGGAGTGGGGTGGTTATGAAGTCCGCCGCAGGCTTTCTTTAAAGAACCTCTGGCGTGGCGGTAGGGGGCTGGCTGTCCCGCCAGGGTAAACAAGCAAG‑CTTTGGGCGATTTGTGGTCACACAGGAAAAAAGAACCGCCTGTCACAAAGTAAATTCAGATGCCAGGTATGTGGATATACAGCGAACg < 2:1075939/232‑1 (MQ=255)
gccagccGGGGCGCAATGTCCGGGCA‑AAATCAGGTTTAAACCGTTCGATACTGGATCAGGGCTGGTATGAAATGCGCCGCCAGCTTGCGTATAAGCAGCTCTGGCGTGGCGGTCAGGTGCTTGCTGTTCCGCCAGCGTATACAAGCCAG‑CGTTGCGCGTACTGTGGGCATACAGCGAAAGAGAACCGCCTGTCACAAAGTAAATTCAGAAGCCCGGTATGTGGATATACAGCGAACGcc > 2:1491885/1‑239 (MQ=255)
ccGGGGCGCAATGTCCGGGCA‑AAATCAGGTTTAAACCGTTCGATACTGGATCAGGGCTGGTATGAAATGCGCCGCCAGCTTGCGTATAAGCAGCTCTGGCGTGGCGGTCAGGTGCTTGCTGTTCCGCCAGCGTATACAAGCCAG‑CGTTGCGCGTACTGTGGTCATACAGCGTAAGAAAACCGCCTGGCACAAAGTAAATTCAGATGCCAGGTATGTGGATATACAGCCAACGCCGATGt > 1:841948/1‑239 (MQ=255)
ggCGCAATGTCCGGGCA‑AAATCAGGTTTAAACCGTTCGATACTGGATCAGGGCTGGTATGAAATGCGCCGCCAGCTTGCGTATAAGCAGCTCTGGCGTGGCGGTCAGGTGCTTGCTGTTCCGCCAGCGTATACAAGCCAG‑CGTTGCGCGTACTGTGGTCATACAGCGGAAGAGAACCGCCTGTCACAAAGTAAATTCAGATGCCAGGTATGTGGATATACAGCGAACGCCGATGTAAAt > 1:864979/1‑239 (MQ=255)
cgcAATGTCCGGGCA‑AAATCAGGTTTAAACCGTTCGATACTGGATCAGGGCTGGTATGAAATGCGCCGCCAGCTTGCGTATAAGCAGCTCTGGCGTGGCGGTCAGGTGCTTGCTGTTCCGCCTGCGTATACAAGCCAG‑CGTTGCGCGTACTGTGGGCATACAGCGAAAGAGAACCGCCTGTTACAAAGTAAATTCAGATGCCAGGTATGTGGATCTACAGCGAACGCCGATGTAAATg > 1:171491/1‑238 (MQ=255)
aaTGTCCGGGCA‑AAATCAGGTTTAAACCGTTCGATACTGGATCAGGGCTGGTATGAAATGCGCCGCCAGCTTGCGTATAAGCAGCTCTGGCGTGGCGGTCAGGTGCTTGCGGTTCCGCCAGCGTATACAAGCCCG‑CGTTGCGCGGACGGTGGTCCTACAGCGAAAGAGAACCGCCTGTCACAAAGTAAATTCAGATGCCAGGTATGTGGATATACAGCGAACGCCGATGTAAATGgcg > 2:698552/1‑238 (MQ=255)
cGGGCA‑AAATCAGGTTTAAACCGTTCGATACTGGATCAGGGCTGGTATGAAATGCGCCGCCAGCTTGCGTATAAGCAGCTCTGGCGTGGCGGTCAGGGGCTTGCTGTTCCGCCAGCGTATACAAGACAG‑CGTTGCGCGTACTGTGGTTATACAGCGAAAGAGAACCGCCTGTCACAAAGTAAATTCAGATGCCCGGTATGTGGATATACAGCGAACGCCGATGTAAATGGCGCTCGCa > 1:9325/1‑238 (MQ=255)
ttCGATACTGGATCAGGGCTGGTATGAAATGCGCCGCCAGCTTGCGTATAAGCAGCTCTGGCGTGGCGGTCAGGTGCTTGCTGTTCCGCCAGCGTATACAAGCCAG‑CGTTGCGCGTACTGTGGTCATa < 1:398693/128‑1 (MQ=255)
ttCGATACTGGATCAGGGCTGGTATGAAATGCGCCGCCAGCTTGCGTATAAGCAGCTCTGGCGTGGCGGTCAGGTGCTTGCTGTTCCGCCAGCGTATACAAGCCAG‑CGTTGCGCGTACTGTGGTCATa > 2:398693/1‑128 (MQ=255)
ttCGATACTGGATCAGGGCTGGTATGAAATGCGCCGCCAGCTTGCGTATAAGCAGCTCTGGCGTGGCGGTCAGGTGCTTGCTGTTCCGCCAGCGTATACAAGCCAG‑CGTTGCGCGTACTGTGGTCATACAGCGAAAGAGAACCGCCTGTCACAAAGTAAATTCAGATGCCAGGTATGTGGATATACAGCGAACGCCGATGTAAATGGCGCTCGCAACATTTTAGCGGCGGGGGACGcc > 1:391900/1‑238 (MQ=255)
ttCGATACTGGATCAGGGCTGGTATGAAATGCGCCGCCAGCTTGCGTATAAGCAGCTCTGGCGTGGCGGTCAGGGGCTTGCTGTTCCGCCAGCGTATACAAGCCAG‑CGTTGCGCGTACTGTGGTCATACAGCGGAAGAGAACCGCCTGTCACAAAGTAAATTCAGATGCCAGGTATGTGGATATACAGCGAACGCCGATGTAAATGGCGCTCGCAAAATTTTAGCGGCGGGGCACGcc > 2:845539/1‑238 (MQ=255)
tGGATCAGGGCTGGTATGAAATGCGCCGCCAGCTTGCGTATAAGCAGCTCTGGCGTGGCGGTCAGGTGCTTGCTGTTCCGCCAGCGTATACAAGCCAG‑CGTTGCGCGTACTGTGGTCATACAGCGAAAGAGAACCGCCTGTCACAAAGTAAATTCAGATGCCAGGTATGTGGATATACAGCGAACGCCGATGTAAATGGCGCTCGCAACATTTTAGCGGCGGGGGACCCCgggccttc > 1:167746/1‑231 (MQ=255)
gATCAGGGCTGGTATGAAATGCGCCGCCAGCTTGCGTATAAGCAGCTCTGGCGTGGCGGTCAGGTGCTTGCTGTTCCGCCAGCGTATACAAGCCAG‑CGTTGCGCGTACTGTGGTCATACAGCGAAAGAGAACCGCCTGTCACAAAGTAAATTCAGATGCCAGGTATGGGGATATACAGCGAACCCCGATGTAAATGGCGCTCGCAACATTTTAGCGGCGGGGCGCGCCGCTCTTGc > 2:780420/1‑236 (MQ=255)
gggCTGGTATGAAATGCGCCGCCAGCTTGCGTATAAGCAGCTCTGGCGTGGCGGTCAGGCGCTTGCTGTTCCGCCAACGTATACCAACCAG‑CGTTGCGCGTACTGTGGTCATACAGCGCAAGAGAACCGCCTGTCCCAAAGGAAATTCAGATGCCAGGTATGTGGATATACAGCGAACGCCGGTGTAAAAGGCGCTCCGAACATTTTAGCGGCCGGGCACGCCGCTCttcgcctcggag > 2:995808/1‑229 (MQ=255)
agaaaaTGCGCCGCCGGTTGGGGTATAAGCAGCTCGGGGGGGGGGGTCGGGTGGTGGCTGTCCCGCAGGCGAAAAAAAGCCAG‑GGTTGCGCGGACGGGGGTCATACAGCGAAAGAGAACCGCCTGTCACAAAGTAAATTCAGATGCCAGGTATGTGGATATACAGCGAACGCCGATGTAAATGGCGCTCGCAACATTTTAGCGGCGGGGCACGCCGTTCTTGCCTGTGGAGAGATGGTg < 2:107513/236‑1 (MQ=255)
cgccgcCAGCTTGCGTATAAGCAGCTCTGGCGTGGCGGTCAGGTGCTTGCTGTTCCGCCAGCGTATACAAGCCAG‑CGTTGCGCGTACTGTGGTCATACAGCGAAAGAGAACCGCCTGTCACAAAGTAAATTCAGATGCCAGGTATGTGGATATACAGCGAACGCCGATGTAAATGGCGCTCGCAACATTTTAGCGGCGGGGGACGCCGCTCTTTGCTCTGGTGAGGCGGgtcagtcaa > 2:166238/1‑237 (MQ=255)
ccAGCTTGCGTATAAGCAGCTCTGGCGTGGCGGTCAGGTGCTTGCTGTTCCGCCAGCGTATACAAGCCAG‑CGTTGCGCGTACTGTGGTCATACAGCGAAAGAGAACCGCCTGTCACAAAGTAAATTCAGATGCCAGGTATGTGGATATACAGCGAACGCCGATGTAAATGGCGCTCGCAACATTTTAGCGGCGGGGCACGCCGGTCTTGCCCGTGGAGAGGTGGGGGAGACAAgccgc > 1:1722442/1‑238 (MQ=255)
aaGCAGCTCTGGCGTGGCGGTCGGGTGCTTGCTGTTCCGCCAGCTTATAAAAGCCAG‑GGTTGCGCGTACTGGGGTCATCCAGCAAAAGAGAACCGCCTGTCACAAAGTAAATTCAGATGCCAGGTATGTGGATATACAGCGAACGCCGATGTAAATGGCGCTCGCAACATTTTAGCGGCGGGGCACGCCGTTCTTGCCTGTGGAGAGATGGTGCAGTCAGGCCGCCCGTTGAAGCAGGa < 1:1201933/239‑1 (MQ=255)
agcggcTCGGGCGGGGCGTTAGGGTTCTGGCTGTCCCGCAGGCGTATAAAAGCCGG‑CGTGGGCCGTACGGGGGTCAAACGGCGAAAAAGAACCGCCTGTCACAAAGTAAATTCAGATGCCAGGTATGTGGATATACAGCGAACGCCGATGTAAATGGCGCTCGCAACATTTTAGCGGCGGGGCACGCCGTTCTTGCCTGTGGAGAGATGGTGCAGTCAGGCCGCCCGTTGAAGCAGGaa < 1:1336824/239‑1 (MQ=255)
gcgtggcgGTCAGGTGCTTGCTGTTCCGCCAGCGTATACAAGCCAG‑CGTTGCGCGTACTGTGGTCATACAGCGAAAGAGAACCGCCTGTCACAAAGTAAATTCAGATGCCAGGTATGTGGATATACAGCGAACGCCGATg > 1:854833/1‑140 (MQ=255)
gcgGTCAGGTGCTTGCTGTTCCGCCAGCGTATACAAGCCAG‑CGTTGCGCGTACTGTGGTCATACAGCGAAAGAGAACCGCCTGTCACAAAGTAAATTCAGATGCCAGGTATGTGGATATACAGCGAACGCCGATGTAAATGGCGCTCGCAACATTTTAGCGGCGGGGGCCGCCGGTCTTTTCTGGGGGGGGATGGTGTGGTCAGGGCGCCCGCTGGAGCAGGGAcccccccccaaagtt > 1:1108176/1‑230 (MQ=255)
gtgtTTGCTGTCCCGCCAGCGTATACAAGCCAG‑AGTTGCGCGTACTGGGGTCATACAGCGAAAGAGAACCGCCTGTCACAAAGTAAATTCAGATGCCAGGTATGTGGATATACAGCGAACGCCGATGTAAATGGCGCTCGCAACATTTTAGCGGCGGGGCACGCCGTTCTTGCCTGTGGAGAGATGGTGCAGTCAGGCCGCCCGTTGAAGCAGGAACCCACCGAAATGATTCAGGCGa < 1:857263/238‑1 (MQ=255)
gTGCTGGCGGTCCCGCCGGCGTAAACAAGCCGG‑CGTGGCGCTTACTGTGGCCATACAGCAAAAAAAAACCGCCTGTCACAAAGTAAATTCAGATGCCAGGTATGTGGATATACAGCGAACGCCGATGTAAATGGCGCTCGCAACATTTTAGCGGCGGGGCACGCCGTTCTTGCCTGTGGAGAGATGGTGCAGTCAGGCCGCCCGTTGAAGCAGGAACCCACCGAAATGATTCAGGCGa < 1:962587/238‑1 (MQ=255)
tgcttg‑tgTTCCCCCAGTGTTTACAAGCCCGATGTTGCGGGACCTGGGGCCATAGACAGAAAGAGAACCGCCTGTCACAAAGTAAATTCAGATGCCAGGTATGTGGATATACAGCGAACGCCGATGTAAATGGCGCTCGCAACATTTTAGCGGCGGGGCACGCCGTTCTTGCCTGTGGAGAGATGGTGCAGTCAGGCCGCCCGTTGAAGCAGGAACCCACCGAAATGATTCAGGCg < 1:177260/236‑1 (MQ=255)
tcgttttCCGCCAGCGTATACAAGCAAG‑CGTTGCGCGTATTGTGGTCAAACAGCGAAAGAGAACCGCCTGTCACAAAGTAAATTCAGATGCCAGGTATGTGGATATACAGCGAACGCCGATGTAAATGGCGCTCGCAACATTTTAGCGGCGGGGCACGCCGTTCTTGCCTGTGGAGAGATGGTGCAGTCAGGCCGCCCGTTGAAGCAGGAACCCACCGAAATGATTCAGGCGACAGCCt < 1:1717341/234‑1 (MQ=255)
tGTCCCGCCGGCGTATAAAAGCCCG‑GTTTGCGGGTATTGTGGTAATACAGCAAAAGAAAACCGCCTGTCACAAAGTAAATTCAGATGCCAGGTATGTGGATATACAGCGAACGCCGATGTAAATGGCGCTCGCAACATTTTAGCGGCGGGGCACGCCGTTCTTGCCTGTGGAGAGATGGTGCAGTCAGGCCGCCCGTTGAAGCAGGAACCCACCGAAATGATTCAGGCGACAGCCTGaa < 1:1718510/239‑1 (MQ=255)
tGTCCCGCCAGCGTATCCAAGCGAG‑GGTTGCGCGTATTGGGGTAATACAGCAAAAGAGAACCGCCTGTCACAAAGTAAATTCAGATGCCAGGTATGTGGATATACAGCGAACGCCGATGTAAATGGCGCTCGCAACATTTTAGCGGCGGGGCACGCCGTTCTTGCCTGTGGAGAGATGGTGCAGTCAGGCCGCCCGTTGAAGCAGGAACCCACCGAAATGATTCAGGCGACAGCCTGaa < 1:1111438/239‑1 (MQ=255)
aaaCAAGCCGG‑GGTTGCGCGTCCTGTGTACAAACGGGGAAAGAGAACCGCCTGTCACAAAGTAAATTCAGATGCCAGGTATGTGGATATACAGCGAACGCCGATGTAAATGGCGCTCGCAACATTTTAGCGGCGGGGCACGCCGTTCTTGCCTGTGGAGAGATGGTGCAGTCAGGCCGCCCGTTGAAGCAGGACCCCACCGAAATGATTCAGGCGACAGCCTGAACGTAGCAGGGATcc < 2:1720600/237‑1 (MQ=255)
aCAAGCCAG‑CGTTGCGCGTACTGTGGTCATAAAGCAAAAGAGAACCGCCTGTCACAAAGTAAATTCAGATGCCAGGTATGTGGATATACAGCGAACGCCGATGTAAATGGCGCTCGCAACATTTTAGCGGCGGGGCACGCCGTTCTTGCCTGTGGAGAGATGGTGCAGTCAGGCCGCCCGTTGAAGCAGGAACCCACCGAAATGATTCAGGCGACAGCCTGAACGTAGCAGGGATCCAc < 1:879037/239‑1 (MQ=255)
aaGCCAG‑CGTTGCGCGTACTGTGGTCATACAGCGAAAGAGAACCGCCTGTca > 1:918180/1‑52 (MQ=255)
ccAG‑CGTTGCGCGTACTGTGGTCATACAGCGAAAGAGAACCGCCTGTCACAAAGTAAATTCAGATGCCAGGTATGTGGATATACAGCGAACGCCGATGTAAATGGCGCTCGCAACATTTTAGCGGCGGGGCACGCCGGTCTTTCCTTTGGAGAGATGGGGCAGGCACGCCGCCCGCTGGAGCAGGAACCCCCCCAAATAATTCAAGCGGCCGCCTGAAAGCAGCAGGGCTCCCCGTCCt > 1:674935/1‑239 (MQ=255)
ccAG‑CGTTGCGCGTACTGTGGTCATACAGCGAAAGAGAACCGCCTGTCACAAAGTAAATTCAGATGCCAGGTATGTGGATATACAGCGAACGCCGATGTAAATGGCGCTCGCAACATTTTAGCGGCGGGGCACGCCCGTCTTGCCTGTGGGGAGATGGGGCCGTCAAGCCGCCCGCTTAAGCAGGAACCCCCCCAAATGATTTCGGCGACAGCCTGAACGTAGCAGGGATCCACGTCCt > 1:173481/1‑239 (MQ=255)
cGTTGCGCTTCCTGGGGACTTACAGGAAAGGAGAACCGCCTGTCACAAAGTAAATTCAGATGCCAGGTATGTGGATATACAGCGAACGCCGATGTAAATGGCGCTCGCAACATTTTAGCGGCGGGGCACGCCGTTCTTGCCTGTGGAGAGATGGTGCAGTCAGGCCGCCCGTTGAAGCAGGAACCCACCGAAATGATTCAGGCGACAGCCTGAACGTAGCAGGGATCCACGTCCTTCa < 1:721603/238‑1 (MQ=255)
gcgaattgtgGTCATACAGAGAAAGAGACCCGCCTGTCACAAAGTAAATTCAGATGCCAGGTATGTGGATATACAGCGAACGCCGATGTAAATGGCGCTCGCAACATTTTAGCGGCGGGGCACGCCGTTCTTGCCTGTGGAGAGATGGTGCAGTCAGGCCGCCCGTTGAAGCAGGAACCCACCGAAATGATTCAGGCGACAGCCTGAACGTAGCAGGGATCCACGTCCTTCAGGGCGTg < 2:167746/233‑1 (MQ=255)
aCTGTGGTCATACAGCGAAAGAGAACCGCCTGTCACAAAGTAAATTCAGATGCCAGGTATGTGGATATACAGCGAACGCCGATGTAAATGGCGCTCGCAACATTTTAGCGGCGGGGCACGCCGGTCTTGCCTGTGGAGAGATGGGGCAGGCAGGCCCCCCGTTGCAGCAGGAACCCACCGAAATGATTCAGGGGACAGCCTGAACGTAGCAGGGATCCACGTCCTTCAGGGCGTggggg > 1:1498591/1‑239 (MQ=255)
|
CCACGCAATGATAGTCATTGAGGATTTGAAGGTCAGCAACATGTCAAAGTCAGCAGCGGGTACGG‑TCAGCCAGCCGGGGCGCAATGTCCGGGCA‑AAATCAGGTTTAAACCGTTCGATACTGGATCAGGGCTGGTATGAAATGCGCCGCCAGCTTGCGTATAAGCAGCTCTGGCGTGGCGGTCAGGTGCTTGCTGTTCCGCCAGCGTATACAAGCCAG‑CGTTGCGCGTACTGTGGTCATACAGCGAAAGAGAACCGCCTGTCACAAAGTAAATTCAGATGCCAGGTATGTGGATATACAGCGAACGCCGATGTAAATGGCGCTCGCAACATTTTAGCGGCGGGGCACGCCGTTCTTGCCTGTGGAGAGATGGTGCAGTCAGGCCGCCCGTTGAAGCAGGAACCCACCGAAATGATTCAGGCGACAGCCTGAACGTAGCAGGGATCCACGTCCTTCAGGGCGTGGAGG > NC_000913/1504436‑1504901
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
