Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A7 F28 I0 R1
|
91 |
172.1 |
3477528 |
97.2% |
3380157 |
226.2 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NC_000913 |
2,151,689 |
G→T |
27.6% |
intergenic (+43/+22) |
yegJ → / ← yegK |
uncharacterized protein/ser/thr phosphatase‑related protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 2,151,689 | 0 | G | T | 27.6%
| 49.6
/ 9.5
| 56 | intergenic (+43/+22) | yegJ/yegK | uncharacterized protein/ser/thr phosphatase‑related protein |
| Reads supporting (aligned to +/- strand): ref base G (27/13); new base T (5/11); total (32/24) |
| Fisher's exact test for biased strand distribution p-value = 1.82e-02 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 2.07e-01 |
AATATGGCCAGGAGTGGAAAATCAAGAAAGAAGATATTTCAGACTGGATGTATACGCGCGGGGATAAAATTTACGGCGGTTATACCATTGATCCTTTATTGGTCACCTATCCAAAAGAAGAAGCCGACGAGCTAAGAGCAAAATTAGTTCGCTAATCAGCCGTTATATTTATTGTTTAAACTGGC‑GGTTGAA‑TTGTTGT‑CTT‑CAA‑CCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGTTTTATCATCATCCGTACGCT‑CGTTTACCG‑CCGGGCTGGACAAAAACTGCTTTAACAATTCAGGTAATAAAT‑CGAG‑TTGTTCCTGCGTTGCTGCCGCCAGTCCATTGAAAAACGGGGTAAAGAAAGGCACATGAGGAGAATTATCCAGCATATTTAACGCCAGTCGCTGGATACCATCCGTAAAT > NC_000913/2151492‑2151924
|
aatgtgggaaGGAGTGAAAAAAAAAGAAAGAATATTTTTCAGATTGGATGTAGCCGCGGGGGAATAAAATTTAAGGCGGTTATCCCATTTATCTTTTTTTGGTCACCTATCAAAAAGAAGAAGCCGCCGAGTTAAGAACAAATTTAGTCCCCTAACCAGCCTTTTTTTTTATTGTTTAAACGGGC‑GGTTGAA‑TTTTTTT‑CTT‑CAT‑CCGCCATGAGAAACTCACTCTGCCCACAGCGCCa < 2:1213417/230‑1 (MQ=255)
aaaaaaaaaaaaaaGTTATTCCAGAGTTGGTGTATCCGCGGGGGAAAAAAATTTAGGGCGGTTAAACTATTGATCTTTTATTGGCCCCTTATACAAAAAAAGAAGCCGACGAGAAAAGAGCAAAATTAGTTCGATAATCAGCCTTTATATTTTTTGTTTAAACTGGC‑GGTTGAT‑TTGTTGT‑CTT‑CAA‑CCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGTTTTatcat < 2:1484154/231‑1 (MQ=255)
aaaaaagaaagaAGATTTTTCAGCTGGGATGTATACGCGCGGGAAAAAAATTTCCGGGGTTTATCCCTTTGATCTTTTATTGGTCCCCTATCAAAAAGAAGAGGCCAACGAGCTAAGAGAAAAATTAGTTCGCAAATCAGCCTTTATATTTATTGTTAAACCGGGC‑GGTTGAA‑TTGTTTT‑CTT‑CAA‑CCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGTTTTatcatc < 1:1203877/235‑1 (MQ=255)
tgtaTGTATACGGGGGGGAATAAAATTTAGGGCGTTTATCCCATTTATCCTTTATTGCTCCCCTAACAAAAAAAAAAAGCCGACGAGCTAAGAGAAAAATTGGTTCGCAAATAGCCCTTTATATTTATTGTTTAAACGGGC‑GGTTGAA‑TTGTTTT‑TTT‑CAA‑CCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGTTTTATCATCATCCGTACGCT‑CGTTTACCG‑CCggg < 1:874035/236‑1 (MQ=255)
tataCCATTGACCTTTTATTGGTCACCTATCAAAAAAAAGAAGCCGACGAGCAAAGAGAAAAATTATTCCGCTAATCAGCCTTTATATTTATTGTTAAACCTGGG‑GGTTAAA‑TTGTTGT‑CTT‑CAA‑CCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGTTTTATCATCATCCGTACGCT‑CGTTTACCG‑CCGGGCTGGACAAAAACTGCTTTAACAATTCAGGTAATaaa < 1:698095/239‑1 (MQ=255)
tGATCCTTTATTGGTCACCTATCCAAAAGAAGAAGCCGACGAGCTAAGAGCAAAATTAGTTCGCTAATCAGCCGTTATATTTATTGTTTAAACTGGC‑GGTTGTA‑TTGTTGT‑CTT‑CAA‑CCGCCATGAGAAAATCACTCTGCCCACAGCGCCAGTGCCCACGTTTTATCATCATCCCTACGCT‑CGTTTACCG‑CCGCGGTGGACAAAAAATGCTTTTACAATTCTGGGAATAAAA‑CGAg‑gtg > 2:558064/1‑239 (MQ=255)
tGATCCTTTATTGGTCACCTATCCAAAAGAAGAAGCCGACGAGCTAAGAGCAAAATTAGTTCGCTAATCAGCCGTTATATTTATTGTTTAAACTGGC‑GGTTGAA‑TTGTTGT‑CTT‑CAA‑CCGCCATGAGAAACTCACTCTTCCCACAGCGCCAGTGCCAACGTTTTATCATCATCCGTACGCC‑CGTTTACCG‑CCGGGCTGGACAAAAAATGCTTTAACAATTTAGGTAATAAAT‑CGAg‑ttg > 1:985986/1‑239 (MQ=255)
gATCCTTTATTGGTCACCTATCCAAAAGAAGAAGCCGACGAGCTAAGAGCAAAATTAGTTCGCTAATCAGCCGTTATATTTATTGTTTAAACTGGC‑GGTTGAA‑TTGTTGT‑CTT‑CAA‑CCGCCTTGAGAAAACCACTCTTCCCCCACCGCCCGTTCCCACCGTTTATTATCATTCCTACGCC‑CGCTTTTCC‑CCGGGCGGGGCCAAAACTGCCTTAACAATTCAGCTAATAAAT‑CGAg‑ttgt > 2:779101/1‑239 (MQ=255)
ttATTGGTCACCTATCCAAAAGAAGAAGCCGACGAGCTAAGAGCAAAATTAGTTCGCTAATCAGCCGTTATATTTATTGTTTAAACTGGC‑GGTTGAA‑TTGTTGT‑TTT‑CCA‑ACGCCATGAGAAAATCACTCTGCCCCCAGCGCCAGGGCCAACGGTTTTTCATCCTACGTAACCC‑CGTTTACCC‑CCGGGCTGGACAAAAAATCCTTTAACAATTCCGGTAAACAAT‑CGAG‑TTGTTCCCGc > 2:978505/1‑239 (MQ=255)
ttATTGGTCACCTATCCAAAAGAAGAAGCCGACGAGCTAAGAGCAAAATTAGTTCGCTAATCAGCCGTTATATTTATTGTTTAAACTGGC‑GGTTGAA‑TTGTTGT‑CTT‑TAA‑ACCCCCTGAGAAACTCACTCTTCCCACAGCCCCACTGCCAACGTTTTATCATCATCCCTCCGCC‑CGTTTTCCG‑CCGGGGTGGGCAAAAAAAGCTTTTACAATTTCGGTTATAAAT‑CGCG‑TTGTTCCttc > 1:1114988/1‑237 (MQ=255)
aTTGGTCACCTATCCAAAAGAAGAAGCCGACGAGCTAAGAGCAAAATTAGTTCGCTAATCAGCCGTTATATTTATTGTTTAAACTGGC‑GGTTGAA‑TTGTTGT‑CTT‑CAA‑CCGCCACGAGAAACTCCCTCTTCCCACAACGCCAGTGCCAACGCTTTATCATCATCCGTAAGCT‑CGTTTACCG‑CCCGGCTGGACAAAAACTGCTTTTACAATTCAGGTAATAAAT‑TGAG‑TTGTTCCTTCGt > 1:490302/1‑239 (MQ=255)
gTCACCTATCCAAAAGAAGAAGCCGACGAGCTAAGAGCAAAATTAGTTCGCTAATCAGCCGTTATATTTATTGTTTAAACTGGC‑GGTTTTA‑TTTTTGT‑CTT‑CCA‑CCGCCATTAGAAAATCACTCTGCCCACAGCGCCAGTGCCAACGGTTTATCATCATCCGTACCCT‑CGCTTACCG‑CCCGGCTGGACAAAAAATGCTTTTACAAATCAGGGAATAAAT‑CGCG‑TTGTTCCTGCggt > 2:280196/1‑234 (MQ=255)
gTCACCTATCCAAAAGAAGAAGCCGACGAGCTAAGAGCAAAATTAGTTCGCTAATCAGCCGTTATATTTATTGTTTAAACTGGC‑GGTTGAA‑TTGTTGT‑CTT‑CAA‑CCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGTTTTATTATCATCCGTACGCT‑CGTTTACCG‑CCGGGCTGGACAAAAACTGCTTTAACAATTCAGGGAATAAAT‑CGAG‑GTGTTCCTGCGtt > 1:753391/1‑236 (MQ=255)
cACCTATCCAAAAGAAGAAGCCGACGAGCTAAGAGCAAAATTAGTTCGCTAATCAGCCGTTATATTTATTGTTTAAACTGGC‑GGTTGAA‑TTTTTGT‑CTT‑CCA‑CCGCCCTGAGAAACTCACTCTGCCCACAGCGCCAGTGCCCACGTTTTATCCACATCCGTACGCT‑CGTTTACCG‑CCCGGCTGGACAAAAACTGCTTTTACAATTCCGGGAATAAAA‑CGCG‑TTGTTCCTGCGTttctt > 2:1236316/1‑237 (MQ=255)
cACCTATCCAAAAGAAGAAGCCGACGAGCTAAGAGCAAAATTAGTTCGCTAATCAGCCGTTATATTTATTGTTTAAACTGGC‑GGTTGAA‑ATGTTGT‑CTT‑CAA‑CCGCCATGAAAAACTCACTCTGCCCACAACCCCAGTGCCAACGTTTTATCATCATCCCTACGCT‑CGGTTACCG‑CCCGGCGCGCCAAAAACCGCTTTACCAATTCAGGGAATAAAT‑AAGG‑TTGTCCCCTCGTtgctg > 2:370670/1‑238 (MQ=255)
aCCTATCCAAAAGAAGAAGCCGACGAGCTAAGAGCAAAATTAGTTCGCTAATCAGCCGTTATATTTATTGTTTAAACTGGC‑GGTTTAA‑TTTTTTT‑CTT‑TAA‑CCGCCATGAGAAACTCACTCTGCCCACCGCGCCAGTGCCCACGTTTTATCCTCATCCGCACGCT‑CGTTTTCCG‑CCGGGCGTGCCAAAAACTTCTTTCACACTTCAGGGAATAAAA‑TCAG‑GTGTTCCTCCGTttctgc > 2:1227508/1‑238 (MQ=255)
cTATCCAAAAGAAGAAGCCGACGAGCTAAGAGCAAAATTAGTTCGCTAATCAGCCGTTATATTTATTGTTTAAACTGGC‑GGTTGAA‑TTGTTGT‑CTT‑CAA‑CCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGTTTTATCATCATCCGTACGCT‑CGTTTACCG‑CCGGGCTGGACAAAAACTGCTTTAACAATTCAGGTAATAAAT‑CCAG‑TTGTTCCTGCGTTGCTgccg > 1:630231/1‑238 (MQ=255)
cTATCCAAAAGAAGAAGCCGACGAGCTAAGAGCAAAATTAGTTCGCTAATCAGCCGTTATATTTATTGTTTAAACTGGC‑GGTTGAA‑TTGTTGT‑CTT‑CAA‑CCGCCATGAGAAAATCACTCTGCCCACAACGCCAGTGCCAACGTTTTATCATCATCCGTACGCT‑CGTTTACCG‑CCGGGCTTGGCAAAAACTGCTTTAACAATTCAGGTAATAAAT‑CGAG‑GTTTTTCTGCGTTGCTgccg > 1:1627048/1‑238 (MQ=255)
ataacaaaaaaaaaaaGCCAACGAGATAAGAAAAAATTTATTTCTATAACCAGCTTTTATATTTATTGTTAAACCTGGC‑GTTTGAT‑TTTTTGT‑TTT‑CAA‑CCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGTTTTATCATCATCCGTACGCT‑CGTTTACCG‑CCGGGCTGGACAAAAACTGCTTTAACAATTCAGGTAATAAAT‑CGAG‑TTGTTCCTGCGTTGCTgccgc < 1:521797/233‑1 (MQ=255)
accaaaaaaaaaAGGCCGACGAGCAAAGATAAAAATGAGTCCTTAACTCAGCCTTTATTTTTATTTTTAAAACTGGG‑GTTTAAT‑TTGTTGT‑CTT‑CAC‑CCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGTTTTATCATCATCCGTACGCT‑CGTTTACCG‑CCGGGCTGGACAAAAACTGCTTTAACAATTCAGGTAATAAAT‑CGAG‑TTGTTCCTGCGTTGCTGCCGCCa < 1:62107/235‑1 (MQ=255)
aTCCAAAAGAAGAAGCCGACGAGCTAAGAGCAAAATTAGTTCGCTAATCAGCCGTTATATTTATTGTTTAAACTGGC‑GGTTGAA‑TTGTTGT‑CTT‑CAA‑CCGCCATGAGAAACTCACTCTGCCCACAACGCCAGGGCCAACGGTTTATCATCATCCCGACGCT‑CCGTTACCG‑CCCGGCCGGGCAAAAAATGCTTTAACAAATCAGGGAATAAAA‑AGGG‑GTGTTCCTGCGTTGCTgccccc > 2:1505699/1‑238 (MQ=255)
tCCAAAAGAAGAAGCCGACGAGCTAAGAGCAAAATTAGTTCGCTAATCAGCCGTTATATTTATTGTTTAAACTGGC‑GGTTGAA‑TTGTTGT‑CTT‑CAA‑CCCCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGTTTTTTCATCATCCGTACGCT‑CGTTTTCCC‑CCGGGCTGGGCCAAAACTGCTTTAaaaaat > 1:1256588/1‑197 (MQ=255)
tCCAAAAGAAGAAGCCGACGAGCTAAGAGCAAAATTAGTTCGCTAATCAGCCGTTATATTTATTGTTTAAACTGGC‑GGTTGAA‑ATTTTTT‑TTT‑CAA‑CCCCCCTTAAAAACACACTCTGCCCACAACGACAATGCCAACGGTTTATCATCATCCGTAAGCT‑CGTTTACCG‑CCCGGACGGCCAAAAACTGCTTTAACAATATCGGAAATAAAC‑CGAG‑TTGTTCCTTCGTTTCTGCCGCCat > 2:393885/1‑238 (MQ=255)
gaagCCGACGAGCTAAGAGCAAAATTAGTTCGCTAATCAGCCGTTATATTTATTGTTTAAACTGGC‑GGATTTA‑TTGTTTT‑CTT‑CAA‑CAGCCATGAGAAACTCACTTTGCCCACAGCGCCCGAGCCAACGGTTTATTAACCTTCGGACGCTCCGTTCACC‑‑CCGGGCCGGGCCAAACCTGGTTTTAAAAATCATGGAATAAATACGGG‑TT‑TTCCTTGCTTGCAGCCGCCCTTCCAttttaa > 2:240416/1‑235 (MQ=255)
aagCCGGCGAGCTAAGAAAAAATTTATTTCCATAACCAGCTTTTTTTTTTTTTTTTTAAACGGGG‑GGTTAAT‑TTGTTGT‑TTT‑CAA‑CCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGTTTTATCATCATCCGTACGCT‑CGTTTACCG‑CCGGGCTGGACAAAAACTGCTTTAACAATTCAGGTAATAAAT‑CGAG‑TTGTTCCTGCGTTGCTGCCGCCAGTCCATTGaaaa < 1:512202/239‑1 (MQ=255)
agCCGACGAGATAAGAGAAAAATTAGTTCGTTAATCAGCTTTTATATTTATTGTTTAACCGGGG‑GTTTAAT‑TTTTTGT‑CTC‑AAA‑CCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGTTTTATCATCATCCGTACGCT‑CGTTTACCG‑CCGGGCTGGACAAAAACTGCTTTAACAATTCAGGTAATAAAT‑CGAG‑TTGTTCCTGCGTTGCTGCCGCCAGTCCATTGaaaaa < 1:280196/239‑1 (MQ=255)
acgaGCTAAGAGCAAAATTAGTTCGCTAATCAGCCGTTATATTTATTGTTTAAACTGGC‑GGGTTAA‑TTGTTTT‑CTT‑TAA‑CCGCCATGAGAAACTCAATCTGCCCACAGCGCCAGTGCCCCCGATTTATCATCATCCGTACGCT‑CGCTTACCGCCCGGGCGGGACAAAAA‑TTCTTTAACAAATCCGGGAAAAAAA‑CGAG‑TTGTTCCTCTGTTTGTGCCGCCAGTCCCTTGaaaaaaaggg > 2:1406802/1‑234 (MQ=255)
cAAAATTAGTTCGCTAATCAGCCGTTATATTTATTGTTTAAACTGGC‑GGTTTAA‑TTGTTGT‑CTT‑TAA‑CCGCCATGAGAAAATCACTCTGCCCACAACGCCAGTGCCAAAGTTTTTTCATCATCCGTACGCC‑CGTTTAACG‑CCCGGCTGGACAAAAACTGCTTTAACAATTCAGGTAATAAAT‑CGAG‑TTGTTCCTGCGTTGCTTCCGCCCGTTCATTGAAAAAAGGGGGAAAGAAAgggc > 2:120551/1‑237 (MQ=255)
aaaTTAGTTCGCTAATCAGCCGTTATATTTATTGTTTAAACTGGC‑GGTTGAA‑TTGTTTT‑CTT‑CAA‑ACGCCATGAGAAAATCACTCTGCCCACAACGCCAGTGCCAACGGTTTATCATCATCCGTACGCT‑CGTTTACCC‑CCGGGCTGGGCAAAAACTGCTTTTACAATTCAGGTAATAAAT‑CGAG‑TTGTTCCTGCGTTGCTGCCGCCCGGCCCTTGAAAAAAGGGGGAAAGAAAAGcaca > 1:955784/1‑239 (MQ=255)
aaTTAGTTCGCTAATCAGCCGTTATATTTATTGTTTAAACTGGC‑GGTTGGA‑TTGTTGT‑CTT‑CCA‑ACGCCATGAGAAACTCACTCTGCCCCCAGCGCCAGTGCCAAAGTTTTATCATCATCCGTACGCT‑CGTTTACCG‑CCGGGCTGGACAAAAAATGCTTTTACAATTCTGGTAATAAAT‑CGAG‑TTGTTCCTCCGTTGCTGCCGCCCGTCCATTTAAAAAAGGGGGAAAAAAAAGCACAt > 2:1586408/1‑239 (MQ=255)
tAGTCCTCTAATCAGCCTTTATTTTTTTTTTATAACGGGGC‑GTTTGAT‑TTTTTTT‑CTT‑CAA‑CCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGTTTTATCATCATCCGTACGCT‑CGTTTACCG‑CCGGGCTGGACAAAAACTGCTTTAACAATTCAGGTAATAAAT‑CGAG‑TTGTTCCTGCGTTGCTGCCGCCAGTCCATTGAAAAACGGGGTAAAGAAAGGCACATgag < 1:120551/239‑1 (MQ=255)
tAGTCCGCCAATCGCCCTTTATTTTTATTGTTAAACCTGGT‑GGTGAAT‑TTTTTTT‑CTT‑AAA‑CCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGTTTTATCATCATCCGTACGCT‑CGTTTACCG‑CCGGGCTGGACAAAAACTGCTTTAACAATTCAGGTAATAAAT‑CGAG‑TTGTCCCTGCGTTGCTGCCGCCAGTCCATTGAAAAACGGGGTAAAGAAAGGCACATgag < 1:370670/239‑1 (MQ=255)
tAGTACGATAACCGGCCGTAATATTTGTTGTTAAAACTGGG‑GGTT‑AA‑TTGTTTTCCTA‑AAA‑CCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGTTTTATCATCATCCGTACGCT‑CGTTTACCG‑CCGGGCTGGACAAAAACTGCTTTAACAATTCAGGTAATAAAT‑CGAG‑TTGTTCCTGCGTTGCTGCCGCCAGTCCATTGAAAAACGGGGTAAAGAAAGGCACATgag < 1:823773/239‑1 (MQ=255)
gTTCGCTAATCAGCCGTTATATTTATTGTTTAAACTGGC‑GGTTGAA‑TTGTTGT‑CTT‑TAA‑CCCCCATGAGAAACTAAATCTGCCCCAAGCGCCCGTGCCAACGTTTTATAATCATCCGTTAGCT‑CGTTTACCG‑CCCGGCTGGACAAAAACTGCTTTAACAATTCAGGTAAAAAAT‑CGAG‑TTGTTCCTGCGGTGCCGCCGCCCGTCCATTGAACAACCGGGTAAAGAAAAGCACATgagga > 1:640619/1‑239 (MQ=255)
gTTCGCTAATCAGCCGTTATATTTATTGTTTAAACTGGC‑GGTTGAA‑TTGTTGT‑CTT‑CAA‑ACGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCCACGTTTTATCATCATCCGTACGCC‑CGTTTACCG‑CCCGGCTGGACAAAAACTGCTTTAACAATTCCGGTAATAAAT‑CGCG‑GTGTTCCTGCGTTGCTGCCGCCAGTCCCTTTAAAAAAGGGGTaaagaa > 1:923485/1‑226 (MQ=255)
ttCGCTAATCAGCCGTTATATTTATTGTTTAAACTGGC‑GGTTGAA‑TTTTTGT‑CTT‑TAA‑CCGCCATGAGAAACTCACTCTGCCCACAGCGCCCGTGCCCACGGTTTTTCATCATCCGTACGCC‑CGTTTACCC‑CCGGGCCGGACCAAAACTGCTTTTAAAATTTAGGGAATAAAT‑CGAG‑TTGTTCCTGCGTTGCTGCCCCCAGTCCATTTAAAAACGGGGTAAAGAAAGGCACATgaggag > 1:753207/1‑239 (MQ=255)
ctataacgaGCTGTTATTTTTATTGTTAAACCTGGG‑GGTTAAA‑TTGTTGT‑CTA‑CAC‑CCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGTTTTATCATCATCCGTACGCT‑CGTTTACCG‑CCGGGCTGGACAAAAACTGCTTTAACAATTCAGGTAATAAAT‑CGAG‑TTGTTCCTGCGTTGCTGCCGCCAGTCCATTGAAAAACGGGGTAAAGAAAGGCACATGAGGAGaa < 1:1550690/231‑1 (MQ=255)
cGCTAATCAGCCTTTATTTTTGTTTTTAAAACGGGC‑GGTTGAT‑TTGTTTT‑CTT‑CAC‑CCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGTTTTATCATCATCCGTACGCT‑CGTTTACCG‑CCGGGCTGGACAAAAACTGCTTTAACAATTCAGGTAATAAAT‑CGAG‑TTGTTCCTGCGTTGCTGCCGCCAGTCCATTGAAAAACGGGGTAAAGAAAGGCACATgag < 1:693092/234‑1 (MQ=255)
aGCCGTTATATTTATTGTTTAAACTGGC‑GGTTGAA‑TTGTTGT‑CTT‑CAA‑CCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCCACGTTTTATCATCATCCGTACGCC‑CGTTTACCG‑CCGGGCTGGACAAAAACTGCTTTAACAATTCCGGTAATAAAT‑CGAG‑TTGTTCCTGCGTTGCTGCCGCCAGTCCATTGAAAAACGGGGTAAAGAAAGGCACATGAGGAGAATTATCCa > 1:933228/1‑238 (MQ=255)
aGCCGTTATATTTATTGTTTAAACTGGC‑GGTTGAA‑TTGTTGT‑CTT‑CAA‑CCGCCATGAGAAACTCACTCTGCCCACACCGCCAGTGCCAACGTTTTATCATCATCCGTACGCT‑CGTTTACCG‑CCGGGCTGGGCAAAAACTGCTTTTACAATTCAGGGAATAAAT‑CGAG‑TTGTTCCTGCGTTGCTGCCGCCAGTCCCTTGAAAAAAGGGGGAAAGAAAGGCACATGAGGAGAATTATCCa > 1:244877/1‑238 (MQ=255)
gcttttATTTTTTTTTTTTAAACTGGG‑GTTTAAT‑TTTTTGT‑CTC‑AAA‑CCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGTTTTATCATCATCCGTACGCT‑CGTTTACCG‑CCGGGCTGGACAAAAACTGCTTTAACAATTCAGGTAATAAAT‑CGAG‑TTGTTCCTGCGTTGCTGCCGCCAGTCCATTGAAAAACGGGGTAAAGAAAGGCACATGAGGAGAATTATCCAGc < 1:1505699/235‑1 (MQ=255)
tccttATTTTTTTTTTTTTAACGGGG‑CGTTTGA‑TTGTTTG‑TTT‑CAACCCGCCATGAGAACCTCACTCTGCCCACAGCGCCAGTGCCAACGTTTTATCATCATCCGTACGCT‑CGTTTACCG‑CCGGGCTGGACAAAAACTGCTTTAACAATTCAGGTAATAAAT‑CGAG‑TTGTTCCTGCGTTGCTGCCGCCAGTCCATTGAAAAACGGGGTAAAGAAAGGCACATGAGGAGAATTATCCAGc < 2:630231/236‑1 (MQ=255)
cgtttATTTTTTTTGTTT‑AACTGGC‑TGTTGTA‑TTTTTTA‑CTTCCAA‑CCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGTTTTATCATCATCCGTACGCT‑CGTTTACCG‑CCGGGCTGGACAAAAACTGCTTTAACAATTCAGGTAATAAAT‑CGAG‑TTGTTCCTGCGTTGCTGCCGCCAGTCCATTGAAAAACGGGGTAAAGAAAGGCACATGAGGAGAATTATCCAGCa < 1:285245/236‑1 (MQ=255)
cgtttATATTTGTTTTTAAATCTGGT‑GTTTGAA‑TTGTTGT‑‑TT‑CAACCCGCCATGAGAATCTCACTCTGCCCACAGCGCCAGTCCCAACGTTTTATCATCATCCGTACGCT‑CGTTTACCG‑CCGGGCTGGACAAAAACTGCTTTAACAATTCAGGTAATAAAT‑CGAG‑TTGATCCTGCGTTGCTGCCGCCAGTCCATTGAAAAACGGGGTAAAGAAAGGCACATGAGGAGAATTATCCAGCa < 1:1630111/236‑1 (MQ=255)
ccGTTATATTTATTGTTTAAACTGGC‑GGTTGTA‑TTTTTGT‑TTT‑CCA‑CCGCCATGAGAAAATCACTCTGCCCACAGCGCCAGTGCCCACGTTTTATCATTATCCCTACCCC‑CGTTTACCG‑CCCGGCTGGGCAAAAACTGCTTTAACAATTCAGGGAATAAAA‑CGAG‑TTGTTTCTCCGTTTCTGCCGCCCGTCCATTGAAAAACGGGGGAAAGAAAGCGACATGCGGGGAATTATc > 2:693092/1‑234 (MQ=255)
agaaagatttttttttttAAAACGGG‑GGGTGAATTTGTTGC‑TTA‑AAA‑CCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGTTTTATCATCATCCGTACGCT‑CGTTTACCG‑CCGGGCTGGACAAAAACTGCTTTAACAATTCAGGTAATAAAT‑CGAG‑TTGTTCCTGCGTTGCTGCCGCCAGTCCATTGAAAAACGGGGTAAAGAAAGGCACATGAGGAGAATTATCCAGc < 1:1070370/231‑1 (MQ=255)
ttATATTTATTGTTTAAACTGGC‑GGTTTAA‑TTGTTGT‑CTT‑CCA‑CCGCCCTGAGAAACTCACTCTTCCCACAATCCCAGTGCCCACGGTTTTTTATAAACCGTAAGCC‑CGGTTACCG‑CCCGGGTGGGCAAAAACCGCTTTTAAAATTCAGGTAATAAAT‑CGAGTTTGTTCC‑GTGTTGCTGCCCCCCGTCC‑‑TGAAAAACGGGGGAAAAAAAAGCCCCAGGGGAGAATTATCCAgactaatt > 2:967434/1‑232 (MQ=255)
gtttttttttAAACCGGGGGGTTGAT‑TTGTTGT‑CCA‑AAA‑CCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGTTTTATCATCATCCGTACGCT‑CGTTTACCG‑CCGGGCTGGACAAAAACTGCTTTAACAATTCAGGTAATAAAT‑CGAG‑TTGTTCCTGCGTTGCTGCCGCCAGTCCATTGAAAAACGGGGTAAAGAAAGGCACATGAGGAGAATTATCCAGCATATTTaa < 1:240416/232‑1 (MQ=255)
tattGTTTAAACTGGC‑GGTTGAA‑TTTTTGT‑CTT‑TCA‑CCGCCATGAGAAACTCACTCTGCCCACCGCGCCAGTGCCCACGGTTTTTCATCATCCGTACGCT‑CGTTTACCC‑CCCGGGTGGACAAAAACTGCTTTTACAATTCAGGTAATAAAT‑CGAG‑GTGTTTCTGCGTTGCTGCCGCCCGTCCATTGTAAAACGGGGTAAAGAAAAGCACATGAGGAGAATTATTCAGCATAttttaag > 2:1120763/1‑234 (MQ=255)
tGTTTAAACTGGC‑GGTTGAA‑TTGTTGT‑TTT‑CAA‑CCCCCCTGAGAAAATCACTCTTCCCACAGCGCCAGTGCCAAAGTTTTATCATCATACGTAAGCT‑CGTTTACCG‑CCGGGCTGGACAAAAACTGCTTTAACAATTCAGGTAATAAAT‑CGAG‑GTGTTCCTGCGTTGTTGCCGCCAGTCCATTGAAAAAAGGGGTAAAGAAAGGCACATGAGGAGAAATATCCAGCATCTTTAAAGCCAg > 2:980512/1‑239 (MQ=255)
tattAAACTGGG‑CGTTTAA‑GTGTTGT‑TCT‑CAACCCGCCATGAGAAACTCACTCTGCCCAAAGCGCCAGTGCCAACGTTTTATCATCATCCGTACGCT‑CGTTTACCG‑CCGGGCTGGACAAAAACTGCTTTAACAATTCAGGTAATAAAT‑CGAG‑TTGTTCCTGCGTTGCTGCCGCCAGTCCATTGAAAAACGGGGTAAAGAAAGGCACATGAGGAGAATTATCCAGCATATTTAACGCCAg < 1:859913/237‑1 (MQ=255)
tttAAACGTGG‑GGGTGAA‑TTTTTTT‑CTTCCAA‑CCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGTTTTATCATCATCCGTACGCT‑CGTTTACCG‑CCGGGCTGGACAAAAACTGCTTTAACAATTCAGGTAATAAAT‑CGAG‑TTGTTCCTGCGTTGCTGCCGCCAGTCCATTGAAAAACGGGGTAAAGAAAGGCACATGAGGAGAATTATCCAGCATATTTAACGCCAGt < 1:885555/239‑1 (MQ=255)
ttAAACTGGC‑GGTTGAA‑TTGTTGT‑CTT‑TAA‑CCGCCCTGAGAAACTCACTCTGCCCACAGCGCCCGTGGCAACGTTTTTTCATCATCCGTACCCC‑CGCTTTCCC‑CCGGGCGCGACAAAAACTGCTTTAACAATTCATGGAATAAAT‑CGAG‑GTGTTCCTGCGCTTCTTCCGCCAGTCCATTTAAAAAAGGGGGAAAGAAAAGCACAAGAGGAGAATTATCCAACCTATTTAAAGCCAggc > 2:885555/1‑236 (MQ=255)
ttAAACTGGC‑GGTTGAA‑TTGTTGT‑CTT‑CAA‑CCGCCATGAGAAAATCACTCTGCCCCCAGCGCCAGTGCCAACGTTTTATCATCATCCGTACGCT‑CGTTTACCG‑CCGGGCTGGACAAAAACTGCTTTAACAATTCAGGTAATAAAT‑CCAG‑TTGTTCCTGCGTTGCTGCCGCCAGTCCATTGAAAAACGGGGTAAAGAAAGGcaca > 1:581375/1‑204 (MQ=255)
gtGGC‑GGTAGAT‑TTTTTGT‑CCT‑CAA‑CCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACTTTTTATCATCATCCGTACGCT‑CGTTTACCG‑CCGGGCTGGACAAAAACTGCTTTAACAATTCAGGTAATAAAT‑CGAG‑TTGTTCCTGCGTTGCTGCCGCCAGTCCATTGAAAAACGGGGTAAAGAAAGGCACATGAGGAGAATTATCCAGCATATTTAACGCCAGTCGCTGGa < 1:978505/238‑1 (MQ=255)
ggggTTAAA‑TTTTTTT‑CTC‑CAA‑CCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGTTTTATCATCATCCGTACGCT‑CGTTTACCG‑CCGGGCTGGACAAAAACTGCTTTAACAATTCAGGTAATAAAT‑CGAG‑TTGTTCCTGCGTTGCTGCCGCCAGTCCATTGAAAAACGGGGTAAAGAAAGGCACATGAGGAGAATTATCCAGCATATTTAACGCCAGTCGCTGGATa < 1:1236316/236‑1 (MQ=255)
ttgt‑CTT‑CAA‑CCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGTTTTATCATCATCCGTACGCT‑CGTTTACCG‑CCGGGCTGGACAAAAACTGCTTTAACAATTCAGGTAATAAAT‑CGAG‑TTGTTCCTGCGTTGCTGCCGCCAGTCCATTGAAAAACGGGGTaaag > 1:207845/1‑175 (MQ=255)
gt‑CTT‑CAA‑CCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGTTTTATCATCATCCGTACGCT‑CGTTTACCG‑CCGGGCTGGACAAAAACTGCTTTAACAATTCAGGTAATAAAT‑CGAG‑TTGTTCCTGCGTTGCTGCCGCCAGTCCATTGAAAAACGGGGTAAAGAAAGGCACATGAGGAGAATTATCCAGCATATTTAACGCCAGTCGCTGGATACCATCCGTAAAt > 2:474019/1‑236 (MQ=255)
gt‑CTT‑CAA‑CCGCAATGAGAAACTCACTCTAACCACAGCGCCAGTGCCATCGTTTTATCATCATCCGTACGCT‑CGTTTACCG‑CCGGGCTGGCCACAAACTGCTTTAACATTTCCGGAAATAAAT‑CGAA‑TTGTTCCTGAGTTGAAGCCGCCAGTCCATTGAAAAACGGGGTAACGAAAGGCACATGAGGAGAATTATCCAGCATATTTAACGCCAGTCTCTGGATAGCATCCGTAAAt > 2:1538222/1‑236 (MQ=255)
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AATATGGCCAGGAGTGGAAAATCAAGAAAGAAGATATTTCAGACTGGATGTATACGCGCGGGGATAAAATTTACGGCGGTTATACCATTGATCCTTTATTGGTCACCTATCCAAAAGAAGAAGCCGACGAGCTAAGAGCAAAATTAGTTCGCTAATCAGCCGTTATATTTATTGTTTAAACTGGC‑GGTTGAA‑TTGTTGT‑CTT‑CAA‑CCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGTTTTATCATCATCCGTACGCT‑CGTTTACCG‑CCGGGCTGGACAAAAACTGCTTTAACAATTCAGGTAATAAAT‑CGAG‑TTGTTCCTGCGTTGCTGCCGCCAGTCCATTGAAAAACGGGGTAAAGAAAGGCACATGAGGAGAATTATCCAGCATATTTAACGCCAGTCGCTGGATACCATCCGTAAAT > NC_000913/2151492‑2151924
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
