Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A7 F9 I0 R1 83 124.0 2465218 96.8% 2386331 230.2

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_000913 3,206,506 C→A 10.8% T15K (ACA→AAA)  ttdA → L‑tartrate dehydratase, alpha subunit

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,206,5060CA10.8% 294.2 / 2.1 117T15K (ACA→AAA) ttdAL‑tartrate dehydratase, alpha subunit
Reads supporting (aligned to +/- strand):  ref base C (40/62);  new base A (7/8);  total (47/70)
Fisher's exact test for biased strand distribution p-value = 5.86e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 117 total aligned reads displayed.

TTGTGATAAGCGCAGTGTATTTCGCAAAACATTGCCATTCCCTGCTCTGGCGCAATATTCATTCTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAA‑TTTTTCC‑AGACAAAT‑ACAAAAACT‑GGAGTTGCCATGATGA‑GCGAAAGTAATAAGC‑AACAGGCAGTGAATAAGTTGACAGAGATTGTCGCTAACTTT‑ACCGCCATGATTTCTACCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTAAAGGATGCCGAAACGTCGTCGATGGGGAAAATTATCTACCATACGATGTTCGACAACATGCAAAAAGCGATTGACCTGAATCGTCCTGCCTGTCAGGACACCGGGGAGATTATGTTCTTCGTTAAAGTCGGTTCCCGCTTCCCACTGCTTGGCGAGCTGC  >  NC_000913/3206273‑3206742
                                                                                                                                                                                                                                               |                                                                                                                                                                                                                                             
ttGTGATAAGCGCAGTGTATTTCGCAAAACATTGCCATTCCCTGCTCTGGCGCAATATTCATTCTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGGA‑TTTTTTC‑CAACAAATAAAAAAAACT‑GG‑GTTGTCCTTGTGG‑GGGGAAGTAATAAGC‑AACAAGCCGGGAAAAAATTGGCAggga                                                                                                                                                                                                                                          >  1:513028/1‑239 (MQ=255)
       aaGCGCAGTGTATTTCGCAAAACATTGCCATTCCCTGCTCTGGCGCAATATTCATTCTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAA‑TTTTTCC‑AGACAAAT‑ACAAAAACT‑GGAGTTGCCATGATGA‑GCGAAAGTAATAAGC‑AACAGGCAGTGAATAAGTTGACAGAGATTGTCGc                                                                                                                                                                                                                                   <  1:463801/239‑1 (MQ=255)
        aGCGCAGTTTATTTCGCAAAACATTGCAATTCACTGCTCTGTCGCAATATTCATTCTTATTTTCGCGTTTATTCACGAACTGTTAATTACATATTCCCGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGTTAAA‑TTTTTCC‑AGACAAAT‑ACAAAAACT‑GGAGTTGCCATGATGA‑GCGAAAGTAATAAGC‑AACAGGCAGTGAATAAGTTGACAGAGATTGTCGCt                                                                                                                                                                                                                                  <  2:530927/239‑1 (MQ=255)
        aGCGCAGTGTATTTCGCAAAACATTGCCATTCCCTGCTCTGGCGCAATATTCATTCTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGGA‑TTTTTTC‑TTACCAAA‑AAAAAAAAT‑GGAGGTGCCCTTGTGG‑GCGAAAAAAATAAAC‑AACAAGGAGAGAAAAAGTTGACAGAGAGTGTTGCt                                                                                                                                                                                                                                  >  1:803893/1‑239 (MQ=255)
        aGCGCAGTGTATTTCGCAAAACATTGCCATTCCCTGCTCTGGCGCAATATTCATTCTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAA‑TTTTTCC‑AGACAAAT‑ACAAAAACT‑GGAGTTGCCATGATGA‑GCGAAAGTAATAAGC‑AACAGGCAGTGAATAAGTTGACAGAGATTGTCGCt                                                                                                                                                                                                                                  <  2:1055200/239‑1 (MQ=255)
        aGCGCAGTGTATTTCGCAAAACATTGCCATTCCCTGCTCTGGCGCAATATTCATTCTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAA‑TTTTTCC‑AGACAAAT‑ACAAAAACT‑GGAGTTGCCATGATGA‑GCGAAAGTAATAAGC‑AACAGGCAGTGAATAAGTTGACAGAGATTGTCGCt                                                                                                                                                                                                                                  <  1:763793/239‑1 (MQ=255)
          cgcAGTGTATTTCGCAAAACATTGCCATTCCCTGCTCTGGCGCAATATTCATTCTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAA‑TTTTTTC‑AAAACACA‑ACAAAAAAT‑GGAGTTGGCATGATGA‑GCGAAAATAATAAAG‑AACAAACAAAGAAAAAATTGAAAAAGAATGTCGGTaa                                                                                                                                                                                                                                >  2:763793/1‑239 (MQ=255)
                    ttCGCAAAACATTGCCATTCCCTGCTCTGGCGCAATATTCATTCTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAATTTTTTCC‑GAAAAAAA‑AAAAAAATT‑GGAGTTG‑CATGATGAGGCGAAA‑TAATAAAC‑AAAAAGAAAGGGATAAAGTGAAAGAAAATGTCGATAACTTT‑aacac                                                                                                                                                                                                                      >  2:475308/1‑234 (MQ=255)
                    ttCGCAAAACATTGCCATTCCCTGCTCTGGCGCAATATTCATTCTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAA‑TTTTTTC‑AGACAAAA‑AAAAAAACA‑GGAGTTTCCATGTTGG‑GCGAAAGTAATAAAC‑AACACGCAGGGAATAAAATGACAGAGATTGTCGCTAACTTT‑Acatcc                                                                                                                                                                                                                     >  1:1158443/1‑235 (MQ=255)
                      cGCAAAACATTGCCATTCCCTGCTCTGGCGCAATATTCATTCTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAA‑TTTTTTC‑CGACAAAT‑ACAAAAAAT‑GGGGTTGGCATTGTTG‑GGGAAAGGAATAAAA‑AACAAGCAGGGGATAAGTTTTCAGAGAATTTCGCCAAATTT‑TCccccca                                                                                                                                                                                                                   >  1:834286/1‑237 (MQ=255)
                      cGCAAAACATTGCCATTCCCTGCTCTGGCGCAATATTCATTCTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGGGAA‑TTTTTTC‑AGAAAAAA‑AAAAAAAAC‑GGGGTTTCCCATATGG‑GCGAAAGAAAAAAACAAAAAGACAG‑GAATAAAGTGTAAAAGATTGTTGCTAACTTT‑Tcccacat                                                                                                                                                                                                                   >  1:1223418/1‑234 (MQ=255)
                         aaaaCATTGCCATTCCCTGCTCTGGCGCAATATTCATTCTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAA‑TTTTTTC‑AGACAAAT‑ACAAAAACT‑GGGGTTGCCATGATGA‑GGGAAAGTAATAAGA‑AACAGGCAGTGAATAAGTTGACAGAGATTGTCGCTAACTTT‑ACCGCCATGAt                                                                                                                                                                                                                >  1:618666/1‑239 (MQ=255)
                           aaCATTGCCATTCCCTGCTCTGGCGCAATATTCATTCTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAA‑TTTTTTC‑AGAAAAAA‑AAAAAAAAA‑GGGGGTGCCATGATGA‑GGGAAAGAAATAAAA‑AAAAAGGAGTGAATAAGTTGACAGAGATTTTTGCTAAATTT‑ACCGCCATGAttt                                                                                                                                                                                                              >  1:190459/1‑239 (MQ=255)
                             cATTGCCATTCCCTGCTCTGGCGCAATATTCATTCTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAA‑TTTTTTC‑AGACAAAA‑AAAAAAAAT‑TGAGTTGCCATGATGA‑GGGAAAGTAATAAAC‑AACAGGGAGTGAATAAATTGACAGAGATTGTTGCTAACTTT‑ACCGCCCTTAttttt                                                                                                                                                                                                            >  1:847286/1‑237 (MQ=255)
                                   cATTCCCTGCTCTGGCGCAATATTCATTCTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGAAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAA‑TTTTTCC‑AGACAAAT‑ACAAAAACT‑GGATTTGCCATGATGA‑GCGAAAGTAATAAGC‑AACAGGCAGTGAATAAGTTGACAGAGATTGTCGCTAACTTT‑ACCGCCATGATTTCTACCCGa                                                                                                                                                                                                      <  1:441689/239‑1 (MQ=255)
                                   cATTCCCTGCTCTGGCGCAATATTCATTCTTATTTACGCTTTGATTCACAAACTGTTAATTACATATTCACGGGGGAAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTAAA‑TTTTTCC‑AGAAAAAT‑ACAAAAACT‑GGAGTTGCCATGATGA‑GCGAAATAAATAAGC‑AACAGGCAGTGAATAAGTTGACAGAGATTGTCGCTAACTTT‑ACCGCCATGATTTCTACCCGa                                                                                                                                                                                                      <  2:422381/239‑1 (MQ=255)
                                    aTTCCCTGCTCTGGCGCAATATTAATTCTTATTTTCGCGTTGATTCACAAACTGTTAATTACATATTCACGGTGGAAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAA‑TTTTTCC‑AGACAAAT‑ACAAAAACT‑GGAGTGGCCATGATGA‑GCGAAAGTAATAAGC‑AACAGTCAGTGAATAAGTTGACAGAGATTGTCGTTAACTTT‑ACCGCCATGATTTCTACCCGaa                                                                                                                                                                                                     <  2:707159/239‑1 (MQ=255)
                                     ttCCCTGCTCTGGCGCAATATTCTTTTTTATTTTCGTGTAGATTCACGAACTTTTAATTAAATATCCGCGGTGGAAAAAAATAAAAAACCACATTTTTAGTGGTATTTTGTGGCGGTAAT‑TTTTTCA‑AGACAAAT‑ACAAAAACT‑GGAGTGGCCAGGATGA‑GCAAAAGTAATAAGA‑AACAGGCAGTAAATAAGTTGACAGAGATTGTCGCTAACTTT‑ACCGCCATGATTTCTACCCGAAt                                                                                                                                                                                                    <  2:834286/239‑1 (MQ=255)
                                       cccTGCTCTGGCGCAATATTCATTCTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAA‑TTTTTTC‑AGAAAAAT‑ACAAAAACT‑GGAGGTGTCATGATGG‑GAGAAAGGAATAAAC‑AAAAAGCAGTGAATAAAGTGAAAGAGATTGTTGCTAAATTT‑TACGCCATGATTTTTTCCCCAATg                                                                                                                                                                                                   >  1:422381/1‑238 (MQ=255)
                                            ctctGGCGCAATATTCATTCTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGGA‑TTTTTTC‑AGACAAAA‑ACAAAAACT‑TGAGTTGCCATGATGA‑GGGAAAGGAATAAGA‑AACAGACAGTGAATAAGTTGACACAGATTGTCGCTAAATTT‑TCCCCCCAGATTTCTACCCCAATGCCtgat                                                                                                                                                                                             >  1:1089593/1‑239 (MQ=255)
                                            ctctGGCGCAATATTCATTCTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAA‑TTTTTTC‑AGACAAAA‑ACAAAAAAT‑GGAGGTGCCCTGATGA‑GCGAAAGTAATAAAC‑AAAAAGCAATGAATAAATTGAAAGAGATTGTTGCTAACTTT‑ACCCCCATGAATTTTACCCCGAAGCCtgat                                                                                                                                                                                             >  1:994363/1‑239 (MQ=255)
                                                 gcgcAATATTCATTCTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAA‑TTTTTTC‑AGACAAAA‑ACAAAAAAT‑GGAGTTGCCATGATGA‑GCGGAAGTAATAAAC‑AAAAAGCAGTGAATAAATTTACAAAGATTGTTGCTAACATT‑ACCGCCATGATTTTTACCCGAATGCCTGGTGACgt                                                                                                                                                                                        >  1:374205/1‑239 (MQ=255)
                                                      atatTCATTCTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAA‑TTTTTTC‑AGACAAAT‑ACAAAAAAT‑GGAGTTGCCATGATGA‑GCGGAAGTAATAAAC‑AACAGGCAGTGAATAAGTTGACAGAGATTGTCGCTAACTTT‑ATCGCCATGATTTCTACCCGAATGCCTGATGACGtggggg                                                                                                                                                                                   >  1:553213/1‑239 (MQ=255)
                                                       ttttaatttTTATTATCGGTTTGATTCACAAACTGTTAATTACATATTCGTGGGGGAAAAAAAAAAAAAACCACATTTTTGGGTGTAGTTTGTGGCGGTGAA‑TTTTCCC‑AGAAAAAT‑AAAAAAACG‑GGAGTTGCCATGATGA‑GCAAAAGTAAAAAGC‑AACAGGCAGTAAATAAGTTGACAGAGATTGTCGCTAACTTT‑ACCGCCATGATTTCTACCCGAATGCCTGATGACGTGGTGGa                                                                                                                                                                                  <  2:1037681/234‑1 (MQ=255)
                                                       tatttattTTTATTGTAGGTTTGATTCACGAATTGTTAATTAAATTTTCAGGGTGGAAAAAAATAAAAAACCACATTTTTAGTGGTAGTTTGGGGGGGGAAA‑TTTTTCA‑AAAAAAAT‑AAAAAAACG‑GGGTTTGCCATGATGA‑GCGAAAGTAATAAGC‑AACAGGCAGTGAATAAGTTGACAGAGATTGTCGTTAACTTT‑ACCGCCATGATTTCTACCCGAATGCCTGATGACGTGGTGGa                                                                                                                                                                                  <  2:647802/239‑1 (MQ=255)
                                                       tatTCATTCTTATTTTCGCTTTAATTCACGAACTTTTAATTACATATTCACGGTGGAAAAAAATATAAAACCACATTTTTAGTGGTATTTTGTGGCGGTAAA‑TTTTTCC‑AGACAAAT‑ACAAAAACT‑GAAGTTGCCATGATGA‑GCGAAATTAATAAGC‑AACAGGCAGTAAATAAGTTAACAGAGATTGTCGCTACCTTT‑ACCGCCATGATTTCTACCCGAATGCCTGATGACGTGGTGGa                                                                                                                                                                                  <  1:1098660/239‑1 (MQ=255)
                                                               cTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATGCACGGTGGAAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAA‑TTTTTCC‑AAACAAAT‑AAAAAAACT‑GGAGTTGCCATGATGA‑GCGAAAGTAATAAGC‑AACAGGCAGTGAATAAGTTGACAGAGATTGTCGCTAACTTT‑ACCGCCATGATTTCTACCCGAATGCCTGATGACGTGGTGGATAAACTaa                                                                                                                                                                          <  1:877032/239‑1 (MQ=255)
                                                                 tATTTTCGGGTTGATTCACGAACTGTTAATTACATATTCACGGTGGAAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGGGGCGGTAAA‑TTTTTCC‑AGACAAAT‑ACAAAAACG‑GGAGTTGCCATGATGA‑GCGAAAGTAATAAGC‑AACAGGCAGTGAATAAGTTGACAGAGATTGTCGCTAACTTT‑ACCGCCATGATTTCTACCCGAATGCCTGATGACGTGGTGGATAAACTaaaa                                                                                                                                                                        <  1:1166046/239‑1 (MQ=255)
                                                                 tATTTTCGCGTTGATTCACGAACTTTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAA‑TTTTCCC‑AGACAAAT‑ACAAAAACT‑GGAGTTGCCATGATGA‑GCAAAAGTAATAAGC‑AACAGGCAGTGAATAAGTTGACAGAGATTGTCGCTAACTTT‑ACCGCCATGATTTCTACCCGAATGCCTGATGACGTGGTGGATAAACTaaaa                                                                                                                                                                        <  1:724782/239‑1 (MQ=255)
                                                                 tATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAA‑ATTTTTA‑AAACAAAT‑ACAAAAAAT‑GGAGGTTGCATGGTGG‑GAGAAAGTAAATAGC‑AACAAGAAGAGAATAAGATGACAGAGATTGTAGCTCAATTT‑AACGCAACGGATTTTAAACGAATGCCTGATATAGCGGTGAGGAAACTaaaa                                                                                                                                                                        >  2:686417/1‑239 (MQ=255)
                                                                 tATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGCGAA‑TATTTTT‑CGAAAAAA‑AAAAAAAAA‑GTAGGTGTCATGATGA‑GCGGAAATAATAAAA‑AACAAACAGGGAAAAAAAAGACAGAGAATGTCGCTAAATTT‑TACGACATAATTTTTACCCCAATGCCTGAGTACGAGGGGGGGAAACTaaaa                                                                                                                                                                        >  2:697045/1‑239 (MQ=255)
                                                                 tATTTTCGCGTTGATTCACAAACTGTTAATTACATATTCACGGTGGAAAAAAATATAAAACCACATTTTTAGTGGTATTTGGTGGCGGTGAA‑TTTTTCC‑AGACAAAT‑AAAAAAACG‑GGAGTTGCAAGGATGA‑GCGAAAGTAATAAGC‑AACAGGCAGAGAATAAGTTGAAAGAGATTGTCGCTAACTTT‑ACCGCCATGATTTCTACCCGAATGCCTGATGACGTGGTGGATAAACTaaaa                                                                                                                                                                        <  1:980562/239‑1 (MQ=255)
                                                                 tATTTTCGCGTTAATTCACGAATTTTTAATTACATATTCACGGTGGAAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAA‑TTTTTCC‑AGACAAAT‑AAAAAAACT‑GGAGTTGCCATGATGA‑GTGAAAGTAATAAGC‑AACAGGCAGTGAATAAGTTGACAGGGATTTTCGCTAACTTT‑ACCGCCATGATTTCTACCCGAATGCCTGATGACGTGGTGGATAAACTaaaa                                                                                                                                                                        <  1:901204/239‑1 (MQ=255)
                                                                           ttGATTCACGAACTGTTAATTACATTTCCACGGTGGCAAAAAATAAAAACCCACATTTTTAGTGGTAGTTTGTGGCGGTGAA‑TTTTTCC‑AGACAAAT‑ACAAAAACT‑GAATTTGCCATGATGA‑GCAAAATTAATAAGC‑AACAGGCAGTAAATAAGTTAACAGAATTTGTCGTTAACTTT‑ACCGCCATGATTTCTACCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTAAAgg                                                                                                                                                              <  1:770039/239‑1 (MQ=255)
                                                                                          ttAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTATTTTGTGGCGGTAAA‑TTTTTCC‑AGACAAAT‑AAAAAAACT‑GGAGTTGCCATGATGA‑GCGAAAGTAATAAGC‑AACAGGCAGTGAATAAGTTGACAGAGATTGTCGCTAACTTT‑ACCGCCATGATTTCTACCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTAAAGGATGCCGAAAcgtcgt                                                                                                                                               <  1:1046637/239‑1 (MQ=255)
                                                                                          ttAATTACATATTCACGGTGGAAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAA‑TTTTTCC‑AGACAAAT‑AAAAAAACT‑GGAGTTGCCATGATGA‑GCGAAAGTAATAAGC‑AACAGGCAGTGAATAAGTTGACAGAGATTGTCGCTAACTTT‑ACCGCCATGAt                                                                                                                                                                                                                <  1:420869/174‑1 (MQ=255)
                                                                                              ttACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAA‑TTTTTCC‑AGACAAAT‑ACAAAAACT‑GGAGTTGCCATGATGA‑GCGAAAGTAATAAGC‑AACAGGCAGTGAATAAGTTGACAGAGATTGTCGCTAACTTT‑ACCGCCATGATTTCTACCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTAAAGGATGCCGAAACGTCGTCGAt                                                                                                                                           <  1:972372/239‑1 (MQ=255)
                                                                                                  atatTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAA‑ATTTTTT‑AAACAAAA‑ACAAAAAAT‑TGAGTTTCCCTGATTA‑GCGAAAGTAATAAAC‑AACAAGCAATGAATAAAATGAAAGAGAATGTTGCCAACTTT‑ACCCCCCACATTTTTTACCCCATGCCTGATGACGTGGTGGGTAAACTAAAAAAAACAAAAGATGCCCGAACGCCGTCGGTgggg                                                                                                                                       >  2:9497/1‑239 (MQ=255)
                                                                                                   ttttaagggTGGAAAAAAATAAAAAACCAAATTTTTAGTGGTAGTTTGTGGAGGTGAA‑TTTTTCA‑AGAAAAAA‑AAAAAAACG‑GGAGTTGCAATGATGA‑GCAAAAGTAATAAGC‑AACAGGCAGTGAATAGGTTGACAGAGATTGTGGTTAACTTT‑ACCGCCATGATTTCTACCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTAAAGGATGCCGAAACGTCGTCGATGGGGa                                                                                                                                      <  2:618666/232‑1 (MQ=255)
                                                                                                   tatTCAGGGTGGAAAAAAATAAAAACCCACATTTTTAGTGGTAGTTTGTGGCGGTGAA‑TTTTTCC‑AGAAAAAT‑ACAAAACCT‑GGAGTTGCCATGATGA‑GCAAAAGAAATAAGC‑AACAGGCAGTGAATAAGTTGACAGAGATTGTCGTTAACTTT‑ACCGCCATGATTTCTACCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTAAAGGATGCCGAAACGTCGTCGATGGGGa                                                                                                                                      <  1:559706/239‑1 (MQ=255)
                                                                                                   tatTCACGGTGGAAAAAAATAAAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAA‑TTTTTCC‑AGAAAAAT‑AAAAAAACT‑GGAGTTGCCATGATGA‑GCGAAAGTAATAAGC‑AACAGGAAGTGAATAAGTTGACAGAGATTGTCGCTAACTTT‑ACCGCCATGATTTCTACCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTAAAGGATGCCGAAACGTCGTCGATGGGGa                                                                                                                                      <  1:1193615/239‑1 (MQ=255)
                                                                                                    atTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAA‑TTTTTTC‑AGACAAAT‑ACAAAAAATGGGAGTTG‑CATGGTGG‑GCGGAAGGAATAAGC‑AAAAAGCAGTGAAAAAATTGACAAAGATTGTCGCTAAATTT‑TACGCCCTGAATTCTAACCCAATGCCTTATGACGTGGGGGGTAAAATAAAACAACTAAAAGAAGCCCAAAAGTACTCGATggggga                                                                                                                                     >  1:789931/1‑237 (MQ=255)
                                                                                                      tCACGGGGAAAAAAAATAAAAAACCAAATTTTTAGTGGTAGTTTGGGGCGGTGAA‑TTTTTCC‑TGAAAAAA‑AAAAAAACG‑GGAGTTGCCATGATGA‑GCGAAAGTAATAAGC‑AACAGGCAGTGAATAAGTTGACAGAGATTGTCGCTAACTTT‑ACCGCCATGATTTCTACCCGAATGCCTGATGACGTCGTGGATAAACTAAAACAGCTAAAGGATGCCGAAACGTCGTCGATGGGGaaaa                                                                                                                                   <  2:803893/239‑1 (MQ=255)
                                                                                                        aCGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAA‑ATTTTTC‑AGACAAAA‑AAAAAAACT‑TGAGGTGTCCTGGTGG‑GCGAAAGTAAAAAGA‑AACAGACAGAGAATAAGTTGACAGAGAGTGTCGGTAAATTT‑ACCGCCCTGATTTCTACCCGAATACCTGATTAAGTGGTGGTTAAACTAAAACAACTAAAGAATGACGAAACGTCGTCGGGGGGGgaaaat                                                                                                                                 >  2:162693/1‑237 (MQ=255)
                                                                                                        aCGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAA‑ATTTTTC‑AAAAAAAA‑AAAAAAAAA‑GGGGGTGGCATGAGGA‑GCGGAAGAAAAAAAA‑AAAAGAAAGAGAAAAAAATGAAAGAGATTGTTGCTAACTTT‑ACAGCCAGGATTTCTTCCAGAATGACGGGTGAGGGGGGGGGTAAAATAAAAAAACTAAAAGATGCCGAAAAACGGTCGGTGGGGgaaaat                                                                                                                                 >  2:947587/1‑237 (MQ=255)
                                                                                                           gtgaaaaaaaaTATAAAACCACATTTTTAGTGGTAGTTTGGGGCGGTAAA‑TTTTCCC‑AGACAAAT‑ACAAAAACG‑GGAGTTGCCATGATGA‑GCGAAAGTAATAAGC‑AACAGGCAGTGAATAAGTTGACAGAGATTGGCGCTAACTTT‑ACCGCCATGATTTCTACCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTAAAGGATGCCGAAACGTCGTCGATGGGGAAAAtt                                                                                                                                 <  1:697045/231‑1 (MQ=255)
                                                                                                           gTGGCAAAAAATATAAAACCCCATTTTTAGTGTTATTTTGGGGCGGTGAA‑TTTTTCC‑AGCAAAAT‑AAAAAAACG‑GGAGTTGCCATGATGA‑GCAAAAGTAATAAGC‑AACAGGCAGTGAATAAGTTGACAGAGATTGTCGCTAACTTT‑ACCGCCATGATTTCTACCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTAAAGGATGCCGAAACGTCGTCGATGGGGAAAATTAt                                                                                                                               <  1:352262/238‑1 (MQ=255)
                                                                                                           gTGGAAAAAAAAATAAAACCACATTTTTAGTGGTAGTTGGTGGCGGTGAA‑TTTTTCA‑AAAAAAAT‑ACAAAAACG‑GGAGTTGCCATGATGA‑GCGAAAGTAATAAGC‑AACAGGTAGTGAATAAGTTGACAGAGATTGTCGCTAACTTT‑ACCGCCATGATTTCTACCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTAAAGGATGCCGAAACGTCGTCGATGGGGAAAATTAt                                                                                                                               <  2:1210753/238‑1 (MQ=255)
                                                                                                           gTGGAAAAAAAAAAAAACCCACATTTTAGGTGGGAGTTGGTGGGGGAAAA‑TTTTCAC‑AGACAAAT‑AAAAAAAGT‑GGAGTTGCCATGATGA‑GCAAAATAAATAAGC‑AACAGGCAGTGAATAAGTTAACAGAGATTGTCGCTAACTTT‑ACCGCCATGATTTCTACCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTAAAGGATGCCGAAACGTCGTCGATGGGGAAAATTAt                                                                                                                               <  2:355353/238‑1 (MQ=255)
                                                                                                              gaaaaaaaTATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAA‑TTTTCCC‑AGACAAAT‑ACAAAAACT‑GGAGTTGCCATGATGA‑GCGAAAGTAATAAGC‑AACAGGCAGTGAATAAGTTGACAGAGATTGTCGCTAACTTT‑ACCGCCATGATTTCTACCCGAATGCCTGATGACGTGGTGGa                                                                                                                                                                                  <  1:462259/182‑1 (MQ=255)
                                                                                                              gCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAA‑TTTTTTC‑AGACAAAT‑ACAAAAACT‑GGAGTTGCCCTGATGA‑GCGAAAGGAATAAGC‑AAAACGCAGGGAATAAAGTGGCAGAGATTGTGGCTAAATTT‑TCCCCCACGATTTCTACCCCAATGGCTGATGACGGGGTGGGTAAACTAAAAAAGCTAAAAGATGCCGAAAAGCCGTCGGTGGGGGAAATTATTTa                                                                                                                            >  1:844952/1‑238 (MQ=255)
                                                                                                                  aaaaTTTAAACCCACATTTTTTGT‑GTTGTTTGTTGGGGGGAA‑TTTTTCCAAAAAAAAT‑AAAAAAACT‑GGAGTTGCCATGATGG‑TCGAAAGATATAAGC‑AACAGCCGTTGAAAAAGTAGACAGGTATTGTAGTTAATTTT‑ACCGCCATGATTTCTACCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTAAAGGATGCCGAAACGTCGTCGATGGGGAAAATTATCTACCATa                                                                                                                       <  2:965279/239‑1 (MQ=255)
                                                                                                                    aaTATAAAACCAGAGTAATAGTGTTGTTTTTGGGCGATGAA‑TTTTTCC‑AGACAAAT‑ACAAAAACG‑GAAGTAGCAATGATGA‑CGAAAAGTAATAGGA‑AACGGGCAGTCAATAATTTGACGGAGTTTGTGTAAAATTTT‑ACCGCCATGATTTCTACCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTAAAGGATGCCGAAACGTCGTCGATGGGGAAAATTATCTACCATACg                                                                                                                     <  1:48150/239‑1 (MQ=255)
                                                                                                                    aaTATAAAACCACAGTTTTGTTGGTAGTTTGTGG‑GGTGAA‑ATTTTCCAAGACAAAT‑AAAAAACCT‑GGGGTTGCTATGATGA‑GCGAAAGAAATACGC‑AACAGGGGGTAAATAAGTTGACAGGGATTGTCTATAACTTT‑ACCGCCATGATTTCTACCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTAAAGGATGCCGAAACGTCGTCGATGGGGAAAATTATCTACCATACg                                                                                                                     <  2:1158443/239‑1 (MQ=255)
                                                                                                                    aaTAAAAACCCAAATTTTTAGTGGTAGTTTGGGGCGGTGAA‑TTTTTCA‑AAACAAAA‑ACAAAAACT‑GGAGTTGCAATGATGA‑GCGAAAGAAAAAAGA‑AACAGGCAGTAAATAAGTTAACAGAGTTTGTCGCTAATTTT‑ACCGCCATGATTTCTACCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTAAAGGATGCCGAAACGTCGTCGATGGGGAAAATTATCTACCATACg                                                                                                                     <  2:1223418/239‑1 (MQ=255)
                                                                                                                             ccACATTTTTAGTGGTAGTTTGTGGCGGTGAA‑TTTTCCC‑AGACAAAT‑ACAAAAACG‑GGAGTTGCCATGAGGA‑GCAAAAATAATAAGC‑AACAGGCAGTGAATAAGTTGACAGAGATTGTCGATAACTTT‑ACCGCCATGATTTCTACCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTAAAGGATGCCGAAACGTCGTCGATGGGGAAAATTATCTACCATACGATGTTCGac                                                                                                            <  1:7546/239‑1 (MQ=255)
                                                                                                                                             atttgttgGGGGTGAA‑TTGTTCC‑AGACAATT‑ACAAAAACA‑GGAGTTGCCATAATGA‑GGTAAAGTAATAAGC‑AACAGGCAGGAAATAAGTTGACAGGTATTGTCGCTAACTTT‑ACCGCCATGATTTCTACCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTAAAGGATGCCGAAACGTCGTCGATGGGGAAAATTATCTACCATACGATGTTCGACAACATGCAAAAAGCGa                                                                                            <  1:452729/233‑1 (MQ=255)
                                                                                                                                             aGTTTGTGGCGGTGAA‑TTTTTCC‑AGACAAAT‑ACAAAAACT‑GGAGTTGCCATGATGA‑GCGAAAGTAAAAAGC‑AACAGGCAGTGAATAAGTTGACAGAGATTGTCGCTAACTTT‑ACCGCCATGATTTCTACCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTAAAGGATGCCGAAACGTCGTCGATGGGGAAAATTATCTACCATACGATGTTCGACAACATGCAAAAAGCGa                                                                                            <  1:660806/239‑1 (MQ=255)
                                                                                                                                              gTTTGTGGGGGTGAA‑TTTCACG‑AAACAAAT‑ACAAAAACT‑GGAGTTGCCAAGATGA‑GCAAAAGAAATAAAC‑AAGGGGCGTTGAAAAAGTGAACAGATATTGTCGATACTTTT‑ACCGCCATGATTTCTACCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTAAAGGATGCCGAAACGTCGTCGATGGGGAAAATTATCTACCATACGATGTTCGACAACATGCAAAAAGCGa                                                                                            <  2:14921/238‑1 (MQ=255)
                                                                                                                                              gTTTGTGGCTGTAAA‑TTTTTCA‑AAAAAAAA‑AAAAAACCT‑GGAGTGGCCATGAGAT‑GCAAAAGAAAAAAGC‑AACAGGCAGTAAATAAGTTGACAGAGTTTGTCGTTAATTTT‑ACCGCCATGATTTCTACCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTAAAGGATGCCGAAACGTCGTCGATGGGGAAAATTATCTACCATACGATGTTCGACAACATGCAAAAAGCGa                                                                                            <  2:1089593/238‑1 (MQ=255)
                                                                                                                                                  gtgGCGGTGAA‑TTTTTCC‑AGACAAAT‑ACAAAAACT‑GGAGTTGCCATGATGA‑GCGAAAGTAATAAGC‑AACAGGCAGTAAATAAGTTGACAGAGATTGTCGCTAACTTT‑ACCGCCATGATTTCTACCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTAAAGGATGCCGAAACGTCGTCGATGGGGAAAATTATCTACCATACGATGTTCGACAACATGCAAAAAGCGATTGAc                                                                                       <  1:1037511/239‑1 (MQ=255)
                                                                                                                                                   tgGCGTTAAA‑TTTTTCA‑AAAAAAAT‑ACAAAAACT‑GGAGTTGCCAAGATGA‑GAGAAAGAAATAAGC‑AACGGGCAGTGAATAAGTGGAAGGAGATTGTCGCTAACTTT‑ACCGCCATGATTTCTACCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTAAAGGATGCCGAAACGTCGTCGATGGGGAAAATTATCTACCATACGATGTTCGACAACATGCAAAAAGCGATTGAc                                                                                       <  2:459662/238‑1 (MQ=255)
                                                                                                                                                   tgGCGGAAAA‑TTTTGAC‑AGAAAAAT‑ACAAAAACT‑GAAGGGGCAATGATGA‑GCGAAAAAAATAAGC‑AAAAGGCGTTGAATAAGTGGAAAGAAAGTGTCGAAACCTTT‑ACCGCCATGATTTCTACCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTAAAGGATGCCGAAACGGCGTCGATGGGGAAAATTATCTACCATACGATGTTCGACAACATGCAAAAAGCGATTGAc                                                                                       <  2:712962/238‑1 (MQ=255)
                                                                                                                                                              tttttCC‑AGAAAAAA‑AAAAAAACT‑GGAGTTGCCATGATGA‑GCGAAAGTAAAAAGC‑AACAGGCAGTGAATAAGTTGAAAGAGATTGTCGCTAACTTT‑ACCGCCATGATTTCTACCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTAAAGGATGCCGAAACGTCGTCGATGGGGAAAATTATCTACCATACGATGTTCGACAACATGCAAAAAGCGATTGACCTGAATCGTcc                                                                            <  1:376748/239‑1 (MQ=255)
                                                                                                                                                                ttccc‑AGACAAAT‑ACAAAAACT‑GGAGTGGCCATGATGA‑GCAAAAGTAATAAGC‑AACAGGCAGTGAATAAGTTGACAGAAATTGTCGCTAACTTT‑ACCGCCATGATTTCTACCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTAAAGGATGCCGAAACGTCGTCGATGGGGAAAATTATCTACCATACGATGTTCGACAACATGCAAAAAGCGATTGACCTGAATCGTcctg                                                                          <  1:1136401/236‑1 (MQ=255)
                                                                                                                                                                  ttacaaaaaaaa‑acaaaaacG‑GGGTTTGCCATGGAAG‑GCAAAAGAAAAAAAC‑AAAAGGCAGTGAATAAGTTGAAAGAGATTGGCGCTAATTTT‑ACCGCCATGATTTCTACCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTAAAGGATGCCGAAACGTCGTCGATGGGGAAAATTATCTACCATACGATGTTCGACAACATGCAAAAAGCGATTGACCTGAATCGTcctgc                                                                         <  2:847286/231‑1 (MQ=255)
                                                                                                                                                                  tCC‑AGAAAAAT‑AAAAAAACT‑GGATTTCCAATGATGA‑GCGAAAGTAAAAAGC‑AACAGGCAGTAAATAAGTTGACAGAGATTGTCGATAACTTT‑ACCGCCATGATTTCTACCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTAAAGGATGCCGAAACGTCGTCGATGGGGAAAATTATCTACCATACGATGTTCGACAACATGCAAAAAGCGATTGACCTGAATCGTcctgcc                                                                        <  1:244049/239‑1 (MQ=255)
                                                                                                                                                                            aaaaaaaaaaCT‑GGAGTTGCCAGGAGGG‑GCAAAAGAAAAAAGA‑AAGAGGCAGAAAATAAGTTGAAAGAGATTGTCGTAAATTTA‑ACCGCCATGATTTCTACCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTAAAGGATGCCGAAACGTCGTCGATGGGGAAAATTATCTACCATACGATGTTCGACAACATGCAAAAAGCGATTGACCTGAATCGTCCTGCCTGTCAGGa                                                                <  2:414315/234‑1 (MQ=255)
                                                                                                                                                                               aCAAAAACG‑GGAGTGGCCATTATGA‑GCGAAAGTAAAAAGC‑ACGAGTGAGTGAATAATTTGACAGATATTGTCGCTAATTTT‑ACCGCCATGATTTCTACCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTAAAGGATGCCGAAACGTCGTCGATGGGGAAAATTATCTACCATACGATGTTCGACAACATGCAAAAAGCGATTGACCTGAATCGTCCTGCCTGTCAGGacac                                                             <  2:1000215/239‑1 (MQ=255)
                                                                                                                                                                                 aaaaaGT‑GGAGTTTCCATGAGGA‑GAGAAAGTAAAAACC‑AAAAGTGAGTAAATAAGTTGACAAAGGTTGTCGCTAACTTT‑ACCGCCATGATTTCTACCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTAAAGGATGCCGAAACGTCGTCGATGGGGAAAATTATCTACCATACGATGTTCGACAACATGCAAAAAGCGATTGACCTGAATCGTCCTGCCTGTCAGGACACCg                                                           <  2:1150314/239‑1 (MQ=255)
                                                                                                                                                                                  aaaaCT‑GGAGTTGCCATGATGA‑GCGAAAGTAATAAGC‑AACAGGCAGTGAATAAGTTGACAGAGATTGTCGCTAACTTT‑ACCGCCATGATTTCTACCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTAAAGGATGCCGAAACGTCGTCGATGGGGAAAATTATCTACCATACGATGTTCGACAACATGCAAAAAGCGATTGACCTGAATCGTCCTGCCTGTCAGGACACCgg                                                          <  1:9497/239‑1 (MQ=255)
                                                                                                                                                                                   aaaCT‑GGAGTTGCCATGATGA‑GCGAAAGTAATAAGC‑AACAGGCAGTGAATAAGTTGACAGAGATTGTCGCTAACTTT‑ACCGCCATGATTTCTACCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTAAAGGATGCCGAAACGTCGTCGATGGGGAAAATTATCTACCATACGATGTTCGACAACATGCAAAAAGCGATTGACCTGAATCGTCCTGCCTGTCAGGACACCggg                                                         >  1:850849/1‑239 (MQ=255)
                                                                                                                                                                                    aaCT‑GGGGTGGCAATGATGA‑GCAAAAGAAAAAAGC‑AACAGGCAGTGAATAAGTTGACAGAGATTGTCGCTAATTTT‑ACCGCCATGATTTCTACCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTAAAGGATGCCGAAACGTCGTCGATGGGGAAAATTATCTACCATACGATGTTCGACAACATGCAAAAAGCGATTGACCTGAATCGTCCTGCCTGTCAGGACACCgggg                                                        <  2:513028/239‑1 (MQ=255)
                                                                                                                                                                                    aaCT‑GGATTTGCCATAATGA‑GCAAAAGCAAAAAGC‑AACAGCATTTCAATAAGTTAAAAGAGATTGTCGTTAGTTTT‑ACCGCCATGATTTCTACCCGAATGCCTTATGACGTGGTGGATAAACTAAAACAGCTAAAGGATGCCGTAACGTCGTCGATGGGGAAAATTATCTCCCAGCCGATGTTCGACAACATGCAAAAAGCGATTGACCTGAATCGTCCTGCCTGTCAGGACACCgggg                                                        <  1:732324/239‑1 (MQ=255)
                                                                                                                                                                                     actgggAGTTGCCAGGAAGA‑GCGAAAGTAATAAGC‑AAAAGGGAGTAAATAAGTGGACAGAGATTGCCCTTATCTTT‑ACCGCCATGATTTCTACCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTAAAGGATGCCGAAACGTCGTCGATGGGGAAAATTATCTACCATACGATGTTCGACAACATGCAAAAAGCGATTGACCTGAATCGTCCTGCCTGTCAGGACACCgggg                                                        <  2:553213/235‑1 (MQ=255)
                                                                                                                                                                                         ggAGTTGCCATGATGA‑GCGAAAGTAATAAGC‑AACAGGCAGTGAATAAGTTGACAGAGATTGTCGCTAACTTT‑ACCGCCATGATTTCTACCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTAAAGGATGCCGAAACGTCGTCGATGGGGAAAATTATCTACCATACGATGTTCGACAACATGCAAAAAGCGATTGACCTGAATCGTCCTGCCTGTCAGGACACCGGGGAGAt                                                    >  2:1115850/1‑239 (MQ=255)
                                                                                                                                                                                           aGTTGCCATGATGA‑GCGAAAGTAATAAGC‑AACAGGCAGTGAATAAGTTGACAGAGATTGTCGCTAACTTT‑ACCGCCATGATTTCTACCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTAAAGGATGCCGAAACGTCGTCGATGGGGAAAATTATCTACCATACGATGTTCGACAACATGCAAAAAGCGATTGACCTGAATCGTCCTGCCTGTCAGGACACCGGGGAGATTa                                                  >  2:992747/1‑239 (MQ=255)
                                                                                                                                                                                               gCCATGATGA‑GCGAAAGTAATAAGC‑AACAGGCAGTGAATAAGTTGACAGAGATTGTCGCTATCTTT‑ACCGCCATGACTTCTACCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTAAAGGATGCCGAAACGTCGTCGATGGGTAAAATTATCTAACATACGATGTTCTACAACATGCAAAAAGCGATTGAACTGACTCGTCATGCCTGTCAGGACACCGGGGAGATTATGtt                                              >  2:1054914/1‑239 (MQ=255)
                                                                                                                                                                                               gCCATGATGA‑GCGAAAGAAATAAGC‑AACAGGCAGTGAATAAGTTGACAGAAATTGTCGCTAACTTT‑ACCGCCATGATTTCTACCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTAAAGGATGCCGAAACGTCGTCGATGGGGAAAATTATCTACCATACGATGTTCGACAACATGCAAAAAGCGATTGACCTGAATCGTCCTGCCTGTCAGGACACCGGGGAGATTATGtt                                              <  1:686417/239‑1 (MQ=255)
                                                                                                                                                                                                    gatga‑GCGAAAGTAATAAGC‑AACAGGCAGTGAATAAGTTGACAGAGATTGTCGCTAACTTT‑ACCGCCATGATTTCTACCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTAAAGGATGCCGAAACGTCGTCGATGGGGAAAATTATCTACCATACGATGTTCGACAACATGCAAAAAGCGATTGACCTGAATCGTCCTGCCTGTCAGGACACCGGGGAGATTATGTTCTTCg                                         >  2:354023/1‑239 (MQ=255)
                                                                                                                                                                                                           cGAAAGTAATAAGC‑AACAGGCAGTGAATAAGTTGACAGAGATTGTCGCTAACTTT‑ACCGCCATGATTTCTACCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTAAAGGATGCCGAAACGTCGTCGATGGGGAAAATTATCTACCATACGATGTTCGACAACATGCAAAAAGCGATTGACCTGAATCGTCCTGCCTGTCAGGACACCGGGGAGATTATGTTCTTCGTTAAAg                                   >  2:777400/1‑239 (MQ=255)
                                                                                                                                                                                                             aaaGTAATAAGC‑AACAGGCAGTGAATAAGTTGACAGAGATTGTCGTTAACTTT‑ACCGCCATGATTTCTACCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTAAAGGATGCCGAAACGTCGTCGATGGGGAAAATTATCTACCATACGATGTTCGACAACATGCAAAAAGCGATTGACCTGAATCGTCCTGCCTGTCAGGACACCGGGGAGATTATGTTCTTCGTTAAAGt                                  <  1:411796/238‑1 (MQ=255)
                                                                                                                                                                                                             aaaGTAATAACC‑AAAAGCAAGGAAGTAGGTTG‑CAGGGATTGTTGGTAAATTTCGCCGCCCTGATTTCTACCCGAAGGCCTGATGACGTGGTGGATAAACTAAAACAGCTAAAGGATGCCGAAACGTCGTCGATGGGGAAAATTATCTCCCATACGATGTTCGACAACATGCAAAAAGCGATTGCCCTGAATCGTCCTGCCTTTCAGGACACCGGGGAGATTATGTTCTTCGTTAAAg                                   <  2:903565/237‑1 (MQ=255)
                                                                                                                                                                                                              aaGTAATAAGC‑AACAGGAAGTGAATAAGTTGACAGAGATTGTCGCTACCTTT‑ACCGCCATGATTTCTACCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTAAAGGATGCCGAAACGTCGTCGATGGGGAAAATTATCTACCATACGATGTTCGACAACATGCAAAAAGCGATTGACCTGAATCGTCCTGCCTGTCAGGACACCGGGGAGATTATGTTCTTCGTTAAAGt                                  <  2:789931/237‑1 (MQ=255)
                                                                                                                                                                                                                      aGC‑AACAGGCAGTGAATAAGTTGACAGAGATTGTCGCTAACTTT‑ACCGCCATGATTTCTACCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTAAAGGATGCCGAAACGTCGTCGATGGGGAAAATTATCTACCATACGATGTTCGACAACATGCAAAAAGCGATTGACCTGAATCGTCCTGCCTGTCAGGACACCGGGGAGATTATGTTCTTCGTTAAAGTCGGTTccc                          >  2:212044/1‑237 (MQ=255)
                                                                                                                                                                                                                            cAGGCAGTGAATAAGTTGACAGAGATTGTCGCTAACTTT‑ACCGCCATGATTTCTACCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTAAAGGATGCCGAAACGTCGTCGATGGGGAAAATTATCTACCATACGATGTTCGACAACATGCAAAAAGCGATTGACCTGAATCGTCCTGCCTGTCAGGACACCGGGGAGATTATGTTCTTCGTTAAAGTCGGTTCCCGCTTccc                   >  1:778183/1‑239 (MQ=255)
                                                                                                                                                                                                                            cAGGCAGTGAATAAGTTGACAGAGATTGTCGCTAACTTT‑ACCGCCATGATTTCTACCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTAAAGGATGCCGAAACGTCGTCGATGGGGAAAATTATCTACCATACGATGTTCGACAACATGCAAAAAGCGATTGACCTGAATCGTCCTGCCTGTCAGGACACCGGGGAGATTATGTTCTTCGTTAAAGTCGGTTCCCGCTTcc                    >  1:1122123/1‑238 (MQ=255)
                                                                                                                                                                                                                            cAGGCAGTGAATAAGTTGACAGAGATTGTCGCTAACTTT‑ACCGCCATGATTTCTACCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTAAAGGATGCCGAAACGTCGTCGATGGGGAAAATTATCTACCATACGATGTTCGACAACATGCAAAAAGCGATTGACCTGAATCGTCCTGCCTGTCAGGACACCGGGGAGATTATGTTCTTCGTTAAAGTCGGTTCCCGCTTcc                    >  2:1210565/1‑238 (MQ=255)
                                                                                                                                                                                                                            cAGGCAGTGAATAAGTTGACAGAGATTGTCGCTAACTTT‑ACCGCCATGATTTCTACCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTAAAGGATGCCGAAACGTCGTCGATGGGGAAAATTATCTACCATACGATGTTCGACAACATGCAAAAAGCGATTGACCTGAATCGTCCTGCCTGTCAGGACACCGGGGAGATTATGTTCTTCGTTAAAGTCGGTTCCCGCTTcc                    >  2:1214963/1‑238 (MQ=255)
                                                                                                                                                                                                                            cAGGCAGTGAATAAGTTGACAGAGATTGTCGCTAACTTT‑ACCGCCATGATTTCTACCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTAAAGGATGCCGAAACGTCGTCGATGGGGAAAATTATCTACCATACGATGTTCGACAACATGCAAAAAGCGATTGACCTGAATCGTCCTGCCTGTCAGGACACCGGGGAGATTATGTTACTCGTTAAAGTCGGCTCCCGCTTcc                    >  2:642957/1‑238 (MQ=255)
                                                                                                                                                                                                                             aGGCAGTGAATAAGTTGACAGAGATTGTCGCTAACTTT‑ACCGCCATGATTTCTACCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTAAAGGATGCCGAAACGTCGTCGATGGGGAAAATTATCTACCATACGATGTTCGACAACATGCAAAAAGCGATTGACCTGAATCGTCCTGCCTGTCAGGACACCGGGGAGATTATGTTCTTCGTTAAAGTCGGTTCCCGCTTccc                   >  1:331487/1‑238 (MQ=255)
                                                                                                                                                                                                                                cAGTGAATAAGTGGACAGAGATTGTCGCTAACTTT‑ACCGCCATGATTTCTACCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTAAAGGATGCCGAAACGTCGTCGATGGGGAAAATTATCTACCATACGATGTTCGACAACATGCAAAAAGCGATTGACCTGAATCGTCCTGCCTGTCAGGACACCGGGGAGATTATGTTCTTCGTTAAAGTCGGTTCCCGCTTCCCa                  <  2:850849/236‑1 (MQ=255)
                                                                                                                                                                                                                                   tGAATAAGTTGACAGAGATTGTCGCTAACTTT‑ACCGCCATGATTTCTACCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTAAAGGATGCCGAAACGTCGTCGATGGGGAAAATTATCTACCATACGATGTTCGACAACATGCAAAAAGCGATTGACCTGAATCGTCCTGCCTGTCAGGACACCgggg                                                        <  1:1036023/195‑1 (MQ=255)
                                                                                                                                                                                                                                   tGAATAAGTTGACAGAGATTGTCGCTAACTTT‑ACCGCCATGATTTCTACCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTAAAGGATGCCGAAACGTCGTCGATGGGGAAAATTATCTACCATACGATGTTCGACAACATGCAAAAAGCGATTGACCTGAATCGTCCTGCCTGTCAGGACACCGGGGAGATTATGTTCTTCGTTAAAGTCGGTTCCCGCTTCCCACTGCtt            >  2:1105596/1‑239 (MQ=255)
                                                                                                                                                                                                                                    gAATAAGTTGACAGAGATTGTCGCTAACTTT‑ACCGCCATGATTTCTACCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTAAAGGATGCCGAAACGTCGTCGATGGGGAAAATTATCTACCATACGATGTTCGACAACATGCAAAAAGCGATTGACCTGAATCGTCCTGCCTGTCAGGACACCGGGGAGATTATGTTCTTCGTTAAAGTCGGTTCCCGCTTCCCACTGCTTg           >  1:116560/1‑239 (MQ=255)
                                                                                                                                                                                                                                         aGTTGACAGAGATTGTCGCTAACTTT‑ACCGCCATGATTTCTACCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTAAAGGATGCCGAAACGTCGTCGATGGGGAAAATTATCTACCATACGATGTTCGACAACATGCAAAAAGCGATTGACCTGAATCGTCCTGCCTGTCAGGACACCGGGGAGATTATGTTCTTCGTTAAAGTCGGTTCCCGCTTCCCACTGCTTGGCGa       >  1:442566/1‑238 (MQ=255)
                                                                                                                                                                                                                                         aGTTGACAGAGATTGTCGCTAACTTT‑ACCGCCATGATTTCTACCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTAAAGGATGCCGAAACGTCGTCGATGGGGAAAATTATCTACCATACGATGTTCGACAACATGCAAAAAGCGATTGACCTGAATCGTCCTGCCTGTCAGGACACCGGGGAGATTATGTTCTTCGTTAAAGTCGGTTCCCGCTTCCCACTGCTTGGCGAg      <  2:442566/239‑1 (MQ=255)
                                                                                                                                                                                                                                            tGACAGATCTTGCCGCTAACTTA‑CCCGCCATGATTTCTACCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTAAAGGATGCCGAAACGTCGTCGATGGGGAAAATTATCTACCATACGATGTTCGACAACATGCAAAAAGCGATTGACCTGAATCGTCCTGCCTGTCAGGACACCGGGGAGATTATGTTCTTCGTTAAAGTCGGTTCCCGCTTCCCACTGCTTGGCGAGCTg   <  2:270538/239‑1 (MQ=255)
                                                                                                                                                                                                                                             gACAGAGATTGTCGCTCACTTT‑ACCGCCATGATTTCTACCCGAATGCCTGATGACGCGGTGGATAAACTAAAACAGCTAAAGGATGCCGCCACGACGTCGATGGGGAAAATTATCTACCATACGATGTTCGACAACATGCAAAAAGCGATTGACCTGGATCGTCCTGCCTGTCAGGACACCGGGGAGATTATGTTCTTCGTAAAAGTCGGGTCCCGCCTCCCACTGCTTGGCgcggtg   >  2:990118/1‑233 (MQ=255)
                                                                                                                                                                                                                                             gACAGAGATTGTCGCTAACTTT‑ACCGCCATGATTTCTACCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTAAAGGATGCCGAAACGTCGTCGATGGGGAAAATTATCTACCATACGATGTTCGACAACATGCAAAAAGCGATTGACCTGAATCGTCCTGCCTGTCAGGACACCGGGGAGATTATGTTCTTCGTTAAAGTCGGTTCCCGCTTCCCACTGCTTGGCGAGCTGc  >  2:609159/1‑239 (MQ=255)
                                                                                                                                                                                                                                               |                                                                                                                                                                                                                                             
TTGTGATAAGCGCAGTGTATTTCGCAAAACATTGCCATTCCCTGCTCTGGCGCAATATTCATTCTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAA‑TTTTTCC‑AGACAAAT‑ACAAAAACT‑GGAGTTGCCATGATGA‑GCGAAAGTAATAAGC‑AACAGGCAGTGAATAAGTTGACAGAGATTGTCGCTAACTTT‑ACCGCCATGATTTCTACCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTAAAGGATGCCGAAACGTCGTCGATGGGGAAAATTATCTACCATACGATGTTCGACAACATGCAAAAAGCGATTGACCTGAATCGTCCTGCCTGTCAGGACACCGGGGAGATTATGTTCTTCGTTAAAGTCGGTTCCCGCTTCCCACTGCTTGGCGAGCTGC  >  NC_000913/3206273‑3206742

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A