Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A8 F9 I0 R1	48	116.0	2384848	96.1%	2291838	226.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	freq	annotation	gene	description
RA	NC_000913	3,782,913	A→C	18.2%	V250G (GTG→GGG)	gpsA ←	glycerol‑3‑phosphate dehydrogenase (NAD+)

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,782,913	0	A	C	18.2%	114.4 / 4.5	74	V250G (GTG→GGG)	gpsA	glycerol‑3‑phosphate dehydrogenase (NAD+)
Reads supporting (aligned to +/- strand): ref base A (27/32); new base C (4/11); total (31/43)
Fisher's exact test for biased strand distribution p-value = 2.45e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

AGTAAAGTCAATGCTGCCTCGCGCGCGTTTTTTCCGCAATATAATACTTGATAAATTTCCTCGGTTATTGGCATTTCAACGCCGAAGCGATGCGCCAGTTCGCGGACTTCTTTCGTATTGCGGTAGCCTTCCACCACCTGACCAATCTTCTCCTGCGCGCTTTGTACATCCATGCCCTGACCGAGCATCATGCCAAAACGGCGGTTACGCGACTGGTTGT‑CGGTACAGGTAAGCACCA‑GATCGCCAAGCCCCGCCATGCCCATAA‑AGGT‑GGCAGGGTCG‑GCACCCAG‑CGCCGCACCAAGACGCGACATTTCAGCCAGCCCACGGGTGATCAGCGCCGTACGCGCATTCGCACCAAAACCGAT‑ACCGTCGGACATCCCCGCACCAATGGCAATAACGTTTTTCACCGCGCCGCCAAGCTGCACGCCAATGAAATCCGGATTGCTGTAAACGCGGAAACTTTTGCCGCAGTGCA  >  NC_000913/3782679‑3783150

aGTAAAGTCAATGCTGCCTCGCGCGCGTTTTTTCCGCAATATAATACTTGATAAATTTCCTCGGTTATTGGCATTTCAACGCCGAAGCGATGCGCCAGTTCGCGGACTTCTTTCGTATTGCGGTAGCCTTCCACCACCTGACCAATCTTCTCCTGCGCGCTTTGTACATCCATGCCCTGACCGAGCATCATGCCAAAACGGCGGTTACGTGACTGGTTGT‑CGGTACAGGTAAGCACCA‑g                                                                                                                                                                                                                                                <  1:329126/239‑1 (MQ=255)

       tCAATGCTGCCTCGCGCGCGTTTTTTCCGCAATATAATACTTGATAAATTTCCTCGGTTATTGGCATTTCAACGCCGAAGCGATGCGCCAGTTCGCGGACTTCTTTCGTATTGCGGTAGCCTTCCACCACCTGACCAATCTTCTCCTGCGCGCTTTGTACATCCATGCCCTGACCGAGCATCATGCCAAAACGGCGGTTTCGCGGCTTGGTGT‑CGGGTAAGGTAAACACCA‑AATCGCCa                                                                                                                                                                                                                                         >  1:857832/1‑239 (MQ=255)

       tCAATGCTGCCTCGCGCGCGTTTTTTCCGCAATATAATACTTGATAAATTTCCTCGGTTATTGGCATTTCAACGCCGAAGCGATGCGCCAGTTCGCGGACTTCTTTCGTATTGCGGTAGCCTTCCACCACCTGACCAATCTTCTCCTGCGCGCTTTGTACATCCATGCCCTGACCGAGCATCATGCCAAAACGGCGGTTTCCTCACTGGTTGT‑CGGGACAGCGAAGCACCA‑AAACGCCa                                                                                                                                                                                                                                         >  2:917818/1‑239 (MQ=255)

       tCAATGCTGCCTCGCGCGCGTTTTTTCCGCAATATAATACTTGATAAATTTCCTCGGTTATTGGCATTTCAACGCCGAAGCGATGCGCCAGTTCGCGGACTTCTTTCGTATTGCGGTAGCCTTCCACCACCTGACCAATCTTCTCCTGCGCGCTTTGTACATCCATGCCCTGACCGAGCATCATGCCAAAACGGCGGTTACGCGGCTGGGTGT‑CGGTGAAGGGAAGGACCC‑AAACGCCa                                                                                                                                                                                                                                         >  1:574333/1‑239 (MQ=255)

           tgctgcCTCGCGCGCGTTTTTTCCGCAATATAATACTTGATAAATTTCCTCGGTTATTGGCATTTCAACGCCGAAGCGATGCGCCAGTTCGCGGACTTCTTTCGTATTGCGGTAGCCTTCCACCACCTGACCAATCTTCTCCTGCGCGCTTTGTACATCCATGCCCTGACCGAGCATCATGCCAAAACGGCGGTTACGCGGCTGGTTTT‑CCGTACCGGGGAGCACCaacacgcccagc                                                                                                                                                                                                                                       >  1:433040/1‑227 (MQ=255)

                 cTCGCGCGCGTTTTTTCCGCAATATAATACTTGATAAATTTCCTCGGTTATTGGCATTTCAACGCCGAAGCGATGCGCCAGTTCGCGGACTTCTTTCGTATTGCGGTAGCCTTCCCCCACCTGACCAATCTTCTCCTGCGCGCTTTGTACATCCATGCCCTGACCGAGCATCATGCCAAAACGGCGGTTACGCGACTGGTTGT‑CGGTACAGGTAAGCACCA‑GATCGCCAAGCCCCGCCa                                                                                                                                                                                                                               <  1:1125230/239‑1 (MQ=255)

                  tcgcggcctttttttCCGAATTATAATCCTAGTTAAATTCCCTCTGTTGTTGGCATTTCAACGCGAACGCGATGCGCTCGTTGGCGGACTCCTTCCGTATCGCGCTAGCTTCCCACCACCAGTCCAATCTTCTCCTGCCCCCTTTGTGCATCAAGGCCAGGACCAACCGTCAGCCCAAAACGGCGGTTACGCGACTGGTTGT‑CGGACAAGGTAAGCACCA‑GACCGCCAAGCCCCGCCAt                                                                                                                                                                                                                              <  2:699977/230‑1 (MQ=255)

                  ccgcgcgcgTTTTTTCCTCAATATAATACTGAAGAAATTTCCTCGTTTATTGGCATTTCACCGCCGAAGCGATGCGCAGGTCCGCGGACTTCTTTCTTATTGCGTTGGCCTCCCACCCCCTGACCAATCTTCTCCGGCACGTTTGTTCCATCCATGCCCTGACCGACCTTCATGCCAAAACGGCGGTTACGCGACTGGTTGT‑CGTTACAGGTAACCCCCA‑GACCGCCAAGCCCCGCCAt                                                                                                                                                                                                                              <  2:121969/238‑1 (MQ=255)

                          gTTTTTTCCGCAATATAATACTTGATAAATTTCCTCGGTTATTGGCATTTCAACGCCGAAGCGATGCGCCAGTTCGCGGACTTCTTTCGTATTGCGGTAGCCTTCCACCACCTGACCAATCTTCTCCTGCGCGCTTTGTACATCCATGCCCTGACCGAGCATCATGCCAAAACGGCGGTTACGCGGCTGGTTGT‑CGGTACGGGGTAGCACCA‑GATCCCCAAGCCCCCCCCTGCCCCTaa                                                                                                                                                                                                                      >  1:460549/1‑239 (MQ=255)

                          gTTTTTTCCGCAATATAATACTTGATAAATTTCCTCGGTTATTGGCATTTCAACGCCGAAGCGATGCGCCAGTTCGCGGACTTCTTTCGTATTGCGGTAGCC‑TCCACCACCTGCCCAATCTTCTCCTGCGCGCTTTGTACATCCATGCCCTGACCGAGCATCATGCCAAAACGGCGTTTACGCGACTGGTTGT‑CGGTACAGGTAAGCACCA‑GATCGCCAAGCCCCGCCATGCCCATaa                                                                                                                                                                                                                      <  1:1029668/238‑1 (MQ=255)

                                 ccGCAATATAATACTTGTTAAATTCCCTGGGTTATTGGATTTCCAACGCCGAAGCGATGCGCAAGTTCGCGGCCTTCTTTCGTATTGCGGTAGCCTTCCACCCCCTGCCAAATCTTCCCCGGCGCGCTTTGTACATCCATGCCCTGACCGAGCATCAGGCCAAACCGGCGGTTACGCGACTGGTTGT‑CGGTACAGGTAAGCACCA‑GACCGCAAAGCCCCGCCATGCCCATAA‑AGGT‑GGc                                                                                                                                                                                                             <  2:940548/239‑1 (MQ=255)

                                      atatAATCCTTGTTAAATTTCCTCGTTTTTGGGCATTCCAACGCCGAAGCGATGCGCCGGTTCGCGGACTTCTTTCGTATTGCGGTAGCCTTCCACCACCTGACCAATCTTCTCCTGCGCGTTTTGTACATCCATGCCCTGACCGAGCATCATGCCAAAACGGCGGTTACGCGACTGGTTGT‑CGGTACAGGTAAGCACCA‑GACCGCAAAGCCCCGCCATGCCCATAA‑AGGT‑GGCAGGGt                                                                                                                                                                                                        <  2:471277/239‑1 (MQ=255)

                                             gctggATAAATTCCCGCGGTTTTTGGCATTCCAACGCCGAACCGATGCGCCAGTTCGCGGCCTTCTTTCTTTTTGCGGTACCCTTCCTCCCCTTGCCCAATTGTCTCCTGCGGGCTTTGTACAGCCATGCCGTGACCGAGCATGTTGCCAAAGCGGGGGTTACGCGACTGGTTGT‑CGGTCCAGGAAAGCCCCA‑GATCGCCAAGCCCCGCCATGCCCATAA‑AGGT‑GGCAGGGTCG‑GCAcc                                                                                                                                                                                                <  2:969787/235‑1 (MQ=255)

                                                 gATAAATTTCCTCGGTTATTGGCATTTCAACGCCGAAGCGATGCGCCAGTTCGCGGACTTCTTTCGTATTGCGGTAGCCTTCCACCACCTGACCAATCTTCTCCTGCGCGCTTTGTACATCCATGCCCTGACCGAGCATCATGCCAAAACGGCGGTTACGCGCCTCGTTGT‑CGGGACCGGGAAGCCCCA‑AAACACCAAACCCCCCCCCTCCCACAA‑AGGTGGGCAGGGGC‑‑GCAcccca                                                                                                                                                                                             >  2:143559/1‑236 (MQ=255)

                                                 gATAAATTTCCTCGGTTATTGGCATTTCAACGCCGAAGCGATGCGCCAGTTCGCGGACTTCTTTCGTATTGCGGTAGCCTTCCACCACCTGACCAATCTTCTCCTGCGCGCTTTGTACATCCATGCCCTGACCGAGCATCATGCCAAAACGGCGGTTACGCGACTGGTTGT‑CGGTACAGGTAAGCACCA‑AATCGCCAAGCCCCCCCATGCCCATAA‑AAGG‑GGCAGGGGCG‑GCACCCCg‑c                                                                                                                                                                                           >  1:981734/1‑239 (MQ=255)

                                                 gATAAATTTCCTCGGTTATTGGCATTTCAACGCCGAAGCGATGCGCCAGTTCGCGGACTTCTTTCGTATTGCGGTAGCCTTCCACCACCTGACCAATCTTCTCCTGCGCGCTTTGTACATCCATGCCCTGACCGAGCATCATGCCAAAACGGCGGTTACGCGACTGGGTGT‑CGGGACAGGGAAGCACCA‑AATCGCCAAGCCCCCCCCTACCCCTAA‑AAGT‑GGCAGGGGCG‑GCACCCAg‑c                                                                                                                                                                                           >  1:172493/1‑239 (MQ=255)

                                                 gATAAATTTCCTCGGTTATTGGCATTTCAACGCCGAAGCGATGCGCCAGTTCGCGGACTTCTTTCGTATTGCGGTAGCCTTCCACCACCTGACCAATCTTCTCCTGCGCGCTTTGTACATCCATGCCCTGACCGAGCATCATGCCAAAACGGCGGTTACGCCACTGGGTGT‑CGGGACAGGGAAACACCA‑AAACGCCACACCCCCCCCTGCCCATAC‑AGGC‑GGGAGGGTGG‑GCAccccg                                                                                                                                                                                             >  2:1190638/1‑236 (MQ=255)

                                                 gATAAATTTCCTCGGTTATTGGCATTTCAACGCCGAAGCGATGCGCCAGTTCGCGGACTTCTTTCGTATTGCGGTAGCCTTCCACCACCTGACCAATCTTCTCCTGCGCGCTTTGTACATCCATGCCCTGACCGAGCATCATGCCAAAACGGCGGTTACCCGACTGGTTGT‑CGGGACAGGTAATGACCA‑AATCCCCCACACACCCCCAGACCACAA‑AGCA‑GGCAGGGTCG‑GGAccacac                                                                                                                                                                                            >  2:570572/1‑235 (MQ=255)

                                                 gATAAATTTCCTCGGTTATTGGCATTTCAACGCCGAAGCGATGCGCCAGTTCGCGGACTTCTTTCGTATTGCGGTAGCCTTCCACCACCTGACCAATCTTCTCCTGCGCGCTTTGTACATCCATGCCCTGACCGAGCATCATGCCAAAACGGCGGTTACCCGACTGGTTGT‑CGGGACAGGGAAGCACCA‑AAGCGCCCAACCCCCCCATGCCCCTAA‑AAGG‑GGGAGGGGCG‑GCAccccg                                                                                                                                                                                             >  1:703181/1‑236 (MQ=255)

                                                 gATAAATTTCCTCGGTTATTGGCATTTCAACGCCGAAGCGATGCGCCAGTTCGCGGACTTCTTTCGTATTGCGGTAGCCTTCCACCACCTGACCAATCTTCTCCTGCGCGCTTTGTACATCCATGCCCTGACCGAGCATCATGCCAAAACGGCGGTCACGCGACTTGTGGT‑AGGTGCACGGCAACACCACAATCCCCAAACCCCCCCA‑GCACCTAA‑AACG‑GGCAGGGTGGCGCAcccca                                                                                                                                                                                             >  2:842522/1‑237 (MQ=255)

                                                 gATAAATTTCCTCGGTTATTGGCATTTCAACGCCGAAGCGATGCGCCAGTTCGCGGACTTCTTTCGTATTGCGGTAGCCTTCCACCACCTGACCAATCTTCTCCTGCGCGCTTTGTACATCCATGCCCTGACCGAGCATCATGCCAAAACGGCGGCGACCCCAATGGGTGTCCGGTA‑GGAGAAGCACCC‑CATCGCCCAACCCCGCCCCACCCATAA‑AAGA‑CGCCGGggcg‑gccgccac                                                                                                                                                                                             >  2:763724/1‑232 (MQ=255)

                                                      aTTTCCTCGGTTATTGGCATTTCAACGCCGAAGCGATGCGCCAGTTCGCGGACTTCTTTCGTATTGCGGTAGCCTTCCACCACCTGACCAATCTTCTCCTGCGCGCTTTGTACATCCATGCCCTGACCGAGCATCATGCCAAAACGGCGGGTTCGCGACTGGTTGT‑CGGTACAGGTAAGACCCA‑CATCGCCCAACCCCGCCCTGCCCCTAA‑AAGT‑GGGCGGGGCG‑GCACCCCA‑cgccg                                                                                                                                                                                       >  1:1177600/1‑238 (MQ=255)

                                                         tCCTCGGTTATTGGCATTTCAACGCCGAAGCGATGCGCCAGTTCGCGGACTTCTTTCGTATTGCGGTAGCCTTCCACCACCTGACCAATCTTCTCCTGCGCGCTTTGTACATCCATGCCCTGACCGAGCATCATGCCAAAACGGCGGTTACGCGACTGGTTGT‑CGGGACAGGGAAGCACCA‑AATCGCCAAGCCCCCCCATGCCCCTAA‑AGGT‑GGCAGGGGCG‑GGACCCAC‑CGCCGCAc                                                                                                                                                                                    >  1:831939/1‑238 (MQ=255)

                                                                ttATTGGCATTTCAACCCCGAAGCGATGCGCCAGTTCGCGGACTTCTTTCGTATTGCGGTAGCCTTCCACCCCCTGACCAATCTTCTCCTGCGCGCTTTGTACATCCATGCCCTGACCGAGCATCATGCCAAAACGGCGGTTACGCGACTGGTTGT‑CGGTACAGGTAAGCACCA‑GATCGCCAAGCCCCGCCATGCCCATAA‑AGGT‑GGCAGGGTCG‑GCACCCAG‑CGCCGCACCAAGa                                                                                                                                                                               <  1:1155246/236‑1 (MQ=255)

                                                                ttATTGGCATTGCAATCCCGAGGCTATCCGCCGGTGCGCGGACTTCGTTCCTATTGCGGTCGCCTCCCACCACCTGACCAATCTTCCCCGGCGCGCTTTGTACACCCTGGCCCGGACCGAGCACCATGCCAAACCGGCGGTTACGCGACTGTTTTT‑CGTTACAGGTAAGCCCCA‑GACCCCCAAGCCCCGCCATGCCCATAA‑AGGT‑GGCAGGGTCG‑GCACCCAG‑CGCCGCACCAAGAcgc                                                                                                                                                                            <  2:685783/239‑1 (MQ=255)

                                                                       cattcaaaCGCCGAAGCGATGCGCCAGTTCGCGGACTTCTTTCGTATGGCGGTAGCCTTCCACCCCCGGACCAATCTTCTCCTGCGCGCTTTGTACACCCATGCCCTGACCGACCATCATGCCAAACCGGCGGTTACGCGACTGGTTGT‑CGGTACAGGTAAGCACCA‑GATCGCCAAGCCCCGCCATGCCCATAA‑AGGT‑GGCAGGGTCG‑GCACCCAG‑CGCCGCACCAAGACGCGACAtt                                                                                                                                                                      <  2:981734/232‑1 (MQ=255)

                                                                           tCAACGCCGAAGCGATGCGCCAGTTCGCGGCCTTCTTTCGTATTGCGGTAGCCTTCCCCCCCCTGCCCAATCTTCCCCTGCGCGCTTTGTACATCCATGCCCTGACCGAGCATCATGCCAAAACGGCGGTTACGCGACTGGTTGT‑CGGTACAGGTAAGCACCA‑GATCGCCAAGCCCCGCCATGCCCATAA‑AGGT‑GGCAGGGTCG‑GCACCCAG‑CGCCGCACCAAGACGCGACATTTcagc                                                                                                                                                                 <  1:906319/239‑1 (MQ=255)

                                                                           tCAACGCCGAAGCGATGCGCCAGTGCGCGGACTTCTTTCGTATTGCGGTAGCCTCCCACCCCCTGCCCAATCTTCCCCGGCGCGCTTTGTACATCCATGCCCTGACCGAGCATCATGCCAAAACGGCGGTTACGCGACTGGTTGT‑GGGTACAGGTAAGCACCA‑GAGCGCAAAGCCCCGCCATGCCCATAA‑AGGT‑GGCAGGGTCG‑GCACCCAG‑CGCCGCACCAAGACGCGACATTTcagc                                                                                                                                                                 <  1:260333/239‑1 (MQ=255)

                                                                           tCAACCCCGAGGCGATGCGCCTGTTCGCGGCCTTCTTTCGTATTGCGGTACCCTTCCCCCCCCTGCCCAATCTTCCCCTGCGCGCTTTGTACATCCATGCCCTGACGGAGCATCAGGCCAAAAGGGCGGTTCCGCGACTGGTGGT‑CGGTACAGGTAAGCCCCA‑GACCGCCAGGCCCCGCCATGCCCATAA‑AGGT‑GGCAGGGTCG‑GCACCCAG‑CGCCGCACCAAGACGCGACATTTcagc                                                                                                                                                                 <  2:845969/239‑1 (MQ=255)

                                                                           gcAACGCCGAAGCTATGCGCCCTTTCGCGGACTTCTTTCGTATTGCGTTAGCCTTCCCCCACCTGACCAATCTTCTCCTGCGCGCTTTGTACATCCATGCCCTGACCGAGCATCATGCCAAAACGGCGGTTACGCGACTGGTTGT‑CGGTACAGGTAAGCACCA‑GATCGCAAAGCCCCGCCATGCCCATAA‑AGGT‑GGCAGGGTCG‑GCACCCAG‑CGCCGCACCAAGACGCGACATTTcagc                                                                                                                                                                 <  1:657570/238‑1 (MQ=255)

                                                                              aCGCCGAAGCGATGCGCCAGTTCGCGGACTTCTTTCGTATTGCGGTAGCCTTCCACCCCCTGACCAATCTTCTCCTGCGCGCTTTGTACACCCATGCCCTGACCGAGCATCATGCCAAAACGGCGGTTACGCGACTGGTTGT‑CGGTACAGGTAAGCACCA‑GATCGCCAAGCCCCGCCATGCCCATAA‑AGGT‑GGCAGGGTCG‑GCACCCAG‑CGCCGCACCAAGACGCGACATTTcagccag                                                                                                                                                              <  1:917818/239‑1 (MQ=255)

                                                                                 ccGAAGCGATGCGCCAGTTCGCGGACTTCTTTCGTATTGCGGTAGCCTTCCACCACCTGACCAATCTTCTCCTGCGCGCTTTGTACATCCATGCCCTGACCGAGCATCATGCCAAAACGGCGGTTACCCGCCTGGGTGT‑CGGTCCAGGGAAGCACCA‑GAAGCCCAAGCCCCGCCATGCCCCTAA‑AGGT‑GGCAGGGGCG‑GCACCCAC‑GGCCGCCCCCAGACGGCACACTTccacccacc                                                                                                                                                            >  2:568568/1‑230 (MQ=255)

                                                                                    aaGCGATGCGCCAGTTCGCGGACTTCTTTCGTATTGCGGTAGCCTTCCACCACCTGACCAATCTTCTCCTGCGCGCTTTGTACATCCATGCCCTGACCGAGCATCATGCCAAAACGGCGGTTACGCGACTGGTTGT‑CGGTACAGGTAAGCACCA‑AATCGCCAAACCCCCCCCTGCCCCTAA‑AAGG‑GGCAGGGGCG‑GCACCCCG‑CGCCGCACCCAGACGCGACCTTTCACCCAAcccccc                                                                                                                                                        >  1:1153798/1‑236 (MQ=255)

                                                                                    aaGCGATGCGCCAGTTCGCGGACTTCTTTCGTATTGCGGTAGCCTTCCACCACCTGACCAATCTTCTCCTGCGCGCTTTGTACATCCATGCCCTGACCGAGCATCATGCCAAAACGGCGGTTACGCGAATGGGTGT‑CGGTACAGGTAAGCACCA‑GATCGCCAAGCCCCGCCATGCCCATAA‑AGGG‑GGCAGGGGCG‑GCACCCAG‑CGCCGCACCAAGAAGCGGCAATTCAGCCAACCCACg                                                                                                                                                        >  1:959680/1‑239 (MQ=255)

                                                                                               cAGTTCGCGGACTTCTTTCGTATTGCGGTAGCCTTCCACCACCTGCCCAATCTTCTCCTGCGCGCTTTGTACATCCATGCCCTGACCGAGCATCATGCCAAAACGGCGGTTACGCGACTGGTTGT‑CGGTACAGGTAAGCACCA‑GATCGCCAAGCCCCGCCATGCCCATAA‑AGGT‑GGCAGGGTCG‑GCACCCAG‑CGCCGCACCAAGACGCGACATTTCAGCCAGCCCACGGGTGATCAgcg                                                                                                                                             <  1:884660/239‑1 (MQ=255)

                                                                                                                        cGGTAGCCTTCCACCACCTGACCAATCTTCTCCTGCGCGCTTTGTACATCCATGCCCTGACCGAGCATCATGCCAAAACGGCGGTTTCGCGCCTGGGTGT‑CGGTACAGGTAAGCACCA‑CAAAGCCCAACCCCGCCATGCCCCTAA‑AGGG‑GGCAGGGGCG‑GGACCCAG‑CGCCGCCCCAACAAGCGCCAATTTCGCCCGCCCACCGGGGATCAGACCCGCACGCGCACTCGCACCAAAAc                                                                                                                     >  2:310229/1‑238 (MQ=255)

                                                                                                                            acccTCCCACCCCCTGACCAATCTTCTCCTGCGCGCTTTGTACATCCATGCCCTGACCGAGCATCATGCCAAAACGGCGGTTACGCGACTGGTTGT‑CGGTACAGGTAAGCACCA‑GATCGCCAAGCCCCGCCATGCCCATAA‑AGGT‑GGCAGGGTCG‑GCACCCAG‑CGCCGCACCAAGACGCGACATTTCAGCCAGCCCACGGGTGATCAGCGCCGTACGCGCATTCGCACCAAAACCGAT‑a                                                                                                               <  1:310229/237‑1 (MQ=255)

                                                                                                                                   caccacCTGACCAATCTTCTCCTGCGCGCTTTGTACATCCATGCCCTGACCGAGCATCATGCCAAAACGGCGGTTCCCCCCCTGGTTGT‑CGGTAACGGTAAGCCCCC‑GATCGCCAAGCCCCCCCCTGCCCCTAA‑AGGT‑GGCAGGGGCG‑GCACCCAC‑CGCCGCCCCCCGCCCCGACACTTCAGCCAGCCCCCGGGCGGTCTGCGCCCCCCCCCCATTCGCACCACAACCGAT‑ACCGTCg                                                                                                         >  2:593136/1‑238 (MQ=255)

                                                                                                                                    accaccTGACCAATCTTCTCCTGCGCGCTTTGTACATCCATGCCCTGACCGAGCATCATGCCAAAACGGCGGTTACGCGACTGGTTGC‑CGGTACAGGTAAGCACCA‑GATCGCCAAGCCCCGCCATGCCCATAA‑AGGT‑GGCAGGGTCG‑GCACCCAG‑CGCCGCACCAAGACGCGACATTTCAGCCAGCCCACGGGTGATCAGCGCCGTACGCGCATTCGCACCAAAACCGAT‑ACCGTCGGa                                                                                                       <  1:171357/239‑1 (MQ=255)

                                                                                                                                     cccccTGCCCAATCTTCCCCTGCCCGCTTTGTCCACCCATGCCCTCACCGAGCACCACCCCAAACCGGCGGTCACGCGCTTGGTTGT‑CGTTACAGGTAAGCACCA‑GATCGCCAAGCCCCGCCATGCCCATAA‑AGGT‑GGCAGGGTCG‑GCACCCAG‑CGCCGCACCAAGACGCGACATTTCAGCCAGCCCACGGGTGATCAGCGCCGTACGCGCATTCGCACCAAAACCGAT‑ACCGTCGGAc                                                                                                      <  2:959680/236‑1 (MQ=255)

                                                                                                                                     ccacgttcccAATTTTTCCCGGCGCGTTTGTTAAATCCAGGCCCCGCCCGAGCATAATGCCAAAACGGCGTTTCCGCGACTGTTTGT‑CGGTACAGGTAAGCACCA‑AACCCCCAAGCCCCGCCATGCCCATAA‑AGGT‑GGCAGGGTCG‑GCACCCAG‑CGCCGCACCAAGACGCGACATTTCAGCCAGCCCACGGGTGATCAGCGCCGTACGCGCATTCGCACCAAAACCGAT‑ACCGTCGGAc                                                                                                      <  2:901853/231‑1 (MQ=255)

                                                                                                                                          ggcccATTCTTCCCCTGCGCCCTTTGTACACCCATGCCTGGACCGACCACCAGCCAAAAACGGCGGTTCCGCGCCGGGTTGC‑GGGTACAGGTAAGCCCCA‑GATCGCCAAGCCCCGCCATGCCCATAA‑AGGT‑GGCAGGGTCG‑GCACCCAG‑CGCCGCACCAAGACGCGACATTTCAGCCAGCCCACGGGTGATCAGCGCCGTACGCGCATTCGCACCAAAACCGAT‑ACCGTCGGACATccc                                                                                                 <  2:318426/236‑1 (MQ=255)

                                                                                                                                           gccagaTCTTCTCCGGCGCGTTTTGTACACCCATGCCCTGACCGAGCATCAGGCAAAAACGGCGGTTCCGCGACGGGTTGC‑CGGTACAGGTAAGCACCA‑GATCGCCAAGCCCCGCCATGCCCATAA‑AGGT‑GGCAGGGTCG‑GCACCCAG‑CGCCGCACCAAGACGCGACATTTCAGCCAGCCCACGGGTGATCAGCGCCGTACGCGCATTCGCACCAAAACCGAT‑ACCGTCGGACATccc                                                                                                 <  1:1106378/233‑1 (MQ=255)

                                                                                                                                                 tcttttCCTGCGCGCTTTGTACATCCATGCCCTGACCGAGCATCAGGCCAAAACGGCGGTTACGCGACTGGTTGT‑CGGTACAGGTAAGCACCA‑GATCGCCAAGCCCCGCCATGCCCATAA‑AGGT‑GGCAGGGTCG‑GCACCCAG‑CGCCGCACCAAGACGCGACATTTCAGCCAGCCCACGGGTGATCAGCGCCGTACGCGCATTCGCACCaaa                                                                                                                       <  1:747130/211‑1 (MQ=255)

                                                                                                                                                 tcttctCCTGCGCGCTTTGTACATCCATGCCCTGACCGAGCATCATGCCAAAACGGCGGTTTCGCCACTGGTTGT‑CGGGACCGGTAAACACCA‑GCTCGCCAAGCCCCCCCATTCCCCTTA‑AGCC‑GGCAACGTGG‑GCACCCCGACGCGCAACCACTACCCGCCATTCCA‑CTACCCCACGCGCGGTCAGCCCCCCACACGCATCCGCCCCCAAACCGCA‑ACACCCGGACATCACCccacca                                                                                          >  2:1188485/1‑239 (MQ=255)

                                                                                                                                                 tcttctCCTGCGCGCTTTGTACACCCAGGCCCTGCCCGAGCATCATGCCAAAACGGCGTTTACGCGCCTGTTTGC‑CGGTACAGGTAAGCCCCA‑GATCGCCAAGCCCCGCCATGCCCATAA‑AGGT‑GGCAGGGTCG‑GCACCCAG‑CGCCGCACCAAGACGCGACATTTCAGCCAGCCCACGGGTGATCAGCGCCGTACGCGCATTCGCACCAAAACCGa                                                                                                                  <  1:944407/216‑1 (MQ=255)

                                                                                                                                                        cTGCGCGCTTTGTACATCCATGCCCTGACCGAGCATCAGCCCAAAACGGCGGTTACGCGACTGGTTGT‑CGGTACAGGTAAGCCCCA‑GACCGCCAAGCCCCGCCATGCCCATAA‑AGGT‑GGCAGGGTCG‑GCACCCAG‑CGCCGCACCAAGACGCGACATTTCAGCCAGCCCACGGGTGATCAGCGCCGTACGCGCATTCGCACCAAAACCGAT‑ACCGTCGGACATCCCCGCACCAATGGCaa                                                                                   <  1:568568/239‑1 (MQ=255)

                                                                                                                                                          gcgcgcTTTGTCCACCCTTGCCCTGACCGAGCATCATGCCAAAACGGCGTTTACGCGTCTGGTTGT‑CGGTACAGGTAAGCACCA‑GATCGCCAAGCCCCGCCATGCCCATAA‑AGGT‑GGCAGGGTCG‑GCACCCAG‑CGCCGCACCAAGACGCGACATTTCAGCCAGCCCACGGGTGATCAGCGCCGTACGCGCATTCGCACCAAAACCGAT‑ACCGTCGGACATCCCCGCACCAATGGCAATa                                                                                 <  1:963057/239‑1 (MQ=255)

                                                                                                                                                           cgcgcTTTGTACATCCATGCCCTGACCGAGCATGATGCCAAAACGGCGGTTACGCGACCGGGTGT‑CGGTACAGGCAAGCACCA‑GAACGCCCAACCCCGCCCTCCCCCCAA‑AAGG‑GGCAGGGGCG‑GCACCCAC‑CGCCCCACCAACAAGCCACATTTTCTCCAACCCACGGGGGATCAGCGCCCCACGCCCACTCGCCCCCCAACCACG‑ACCGCCGCACATCCCCCCACCACTAGCacaa                                                                                 >  2:1018894/1‑235 (MQ=255)

                                                                                                                                                           cgcgcTTTGTACATCCATGCCCTGACCGAGCATCATGCCAAAACGGCGGTTACGCGGCTGGTTTT‑CGGTACAGGTAAACACCA‑AAAAGCCCAACCCCCCCACGCCCCTAA‑AGGT‑GGCAGGGGCC‑GCACCCAG‑CGCCGCCCCCACAACCGCCACTTTAGCCACCCCACCGGGGGGCAGCGCCGCACGCGCGCTCGCACCCACACCCAT‑ACCGCCCGCCATCCCCGCCCCCATGGcgctc                                                                                 >  2:1106378/1‑234 (MQ=255)

                                                                                                                                                           cgcgcTTTGTACATCCATGCCCTGACCGAGCATCATGCCAAAACGGCGGTTACGCGACTGGTTGT‑TGGGAAAGGGAAGCACCA‑AATCGCCCAGCCCCCCCCCGCCCCTAA‑AAGG‑GGCGGGGGCG‑GCACCCCG‑CGCCCCCCCACGACGCGCCATTTTAGCCAGCCCCCGGGGGATCAGCGCCGTACGCGCCGTCGCCCCCAAACCCCT‑AACGCCGGGAATCCCCccaccaccgcccata                                                                                 >  2:995549/1‑229 (MQ=255)

                                                                                                                                                                       aTCCATGCCCTGCCCGAGCATCATGCAAAAGCGGCGTTTACTCGACTGGTTGT‑CGGTACGGGTAAGCACCA‑GATCGCCAAGCCCCGCCATGCCCATAA‑AGGT‑GGCAGGGTCG‑GCACCCAG‑CGCCGCACCAAGACGCGACATTTCAGCCAGCCCACGGGTGATCAGCGCCGTACGCGCATTCGCACCAAAACCGAT‑ACCGTCGGACATCCCCGCACCAATGGCAATAACGTTTTTCGCcg                                                                    <  1:520/239‑1 (MQ=255)

                                                                                                                                                                         ccATGCCCTGACCGAGCATCATGCCAAAACGGCGGTTACGCGACTGGTTGT‑CGGTACAGGTAAGCACCA‑GATCGCCAAGCCCCGCCATGCCCATAA‑AGGT‑GGCAGGGTCG‑GCACCCAG‑CGCCGCACCAAGACGCGACATTTcagc                                                                                                                                                                 <  1:167100/145‑1 (MQ=255)

                                                                                                                                                                         ccATGCCCTGACCGAGCATCATGCCAAAACGGCGGTTACGCGACTGGTTGT‑CGGTACAGGTAAGCACCA‑GATCGCCAAGCCCCGCCATGCCCATAA‑AGGT‑GGCAGGGTCG‑GCACCCAG‑CGCCGCACCAAGACGCGACATTTCAGCCAGCCCACGGGTGATCAGCGCCGTACGCGCATTCGCACCAAAACCGAT‑ACCGTCGGACATCCCCGCACCAATGGCAATAACGTTTTTCACcgcg                                                                  <  1:905556/239‑1 (MQ=255)

                                                                                                                                                                         ccATGCCCTGACCGAGCATCATGCCAAAACGGCGGTTACGCGACTGGTTGT‑CGGTACAGGTAAGCACCA‑GATCGCCAAGCCCCGCCATGCCCATAA‑AGGT‑GGCAGGGTCG‑GCACCCAG‑CGCCGCACCAAGACGCGACATTTCAGCCAGCCCACGGGTGATCAGCGCCGTACGCGCATTCGCACCAAAACCGAT‑ACCGTCGGACATCCCCGCACCAATGGCAATAACGTTTTTCACcgcg                                                                  <  1:6381/239‑1 (MQ=255)

                                                                                                                                                                            tGCCCTGACCGAGCATCATGCCAAAACGGCGGTTACGCGACTGGTTGT‑CGGGACAAGGAACCACCA‑GAACCCCCAACCCCCCCATGCCCCTAA‑AAGG‑GGGCGGGGCG‑GCACCCAC‑CGCCCCCCCCCGACGCGACAATTATACCACCCCACGCGGGGGCACGGCCCGCAGCGCCCTTGCCCCAAAACCAATAACCCACGG‑CATCCCCGCCCCACAGCGAAGAACGCTTTTCACCCcgcc                                                                >  2:815248/1‑238 (MQ=255)

                                                                                                                                                                              cccTGACCGAGCATCATGCCAAAACGGCGGTTACGCGACTGGTTGT‑CGGTACAGGTAACCACCA‑GAGCGCCAAGCCCCGCCATGCCCATAA‑AGGT‑GGCAGGGTCG‑GCACCCAG‑CGCCGCACCAAGACGCGACATTTCAGCCAGCCCACGGGTGATCAGCGCCGTACGCGCATTCGCACCAAAACCGAT‑ACCGTCGGACATCCCCGCACCAATGGCAATAACGTTTTTCACCGCgccgcc                                                             <  1:914199/239‑1 (MQ=255)

                                                                                                                                                                              cccTGACCGAGCATCATGCCAAAACGGCGGCTTAGCCGCTGGTTGT‑CGGGAAAGGTAAACCCCA‑AAACGCCAAACCCCGCCCTTCCCCTAACAGGG‑GGCGGGGCCG‑GC‑CCCAG‑CGCCGCCACCAGACGCGACCTTTCATCCAACCCCCAGGGGAACACCGCCAGAACCGCCATCCCACCAAAACACAC‑ACCGGCCGCCAAACCCGCACCACCGTGGATAACGTATTTCACCCcgccgc                                                              >  2:157676/1‑238 (MQ=255)

                                                                                                                                                                               ccTGCCCGAGCATCAGGCCAAACCGGCGGTTGCGCGACTGTTTGG‑CGGTACGGGTAAGCACAA‑GCCCGCCAAGCCCCGCCATGCCCATAA‑AGGT‑GGCAGGGTCG‑GCACCCAG‑CGCCGCACCAAGACGCGACATTTCAGCCAGCCCACGGGTGATCAGCGCCGTACGCGCATTCGCACCAAAACCGAT‑ACCGTCGGACATCCCCGCACCAATGGCAATAACGTTTTTCACCGCGCCGCCa                                                            <  2:851479/239‑1 (MQ=255)

                                                                                                                                                                                 tGACCGAGCATAATGCCAAACCGGCGTTGCCGCGACTGGTTGT‑CGGTACAGGAAAGCCCCA‑GACCGCCAAGCCCCGCCATGCCCATAA‑AGGT‑GGCAGGGTCG‑GCACCCAG‑CGCCGCCCCAAGACGCGACATTTCAGCCAGCCCACGGGTGATCAGCGCCGTACGCGCATTCGCACCAAAACCGAT‑CCCGTCGGACATCCCCGCACCAATGGCAATAACGTTTTTCACCGCGCCGCCAAg                                                          <  1:842522/239‑1 (MQ=255)

                                                                                                                                                                                   aCCGAGCATCATGCCAAAACGGCGGTTACGCGACTGGTTTT‑CGGGACAGGGAAGCACCA‑AAACGCCCAACCCCCCCACGCCCCTAA‑AAGG‑GGGCGGGTCG‑GCCCCCCG‑CGCCGCACCCAGACGCGACATTTCAGCCCGCCCACGGGGGATCAGCGCCGGTCGCGCATTCGCCCCCAAACCGGT‑ACCGCCGGGCATCCCCCCCCCCAAGGCCATAAAGTTTTTCTCCCCgccgcccaccg                                                        >  2:572207/1‑234 (MQ=255)

                                                                                                                                                                                    gcGAGCACCAGGCCAAACCGGCGGTCACGCGGTTGGTTGT‑GGGTCCGGGAAGGCACAA‑GACCGCCAGCCCCCGCCATGCCCATAA‑AGGT‑GGCAGGGTCG‑GCACCCAG‑CGCCGCACCAAGACGCGACATTTCAGCCAGCCCACGGGTGATCAGCGCCGTACGCGCATTCGCACCAAAACCGAT‑ACCGTCGGACATCCCCGCACCAATGGCAATAACGTTTTTCACCGCGCCGCCAAGCTg                                                       <  2:831939/238‑1 (MQ=255)

                                                                                                                                                                                      gacaaccatGCCAAAACGGCGGTTACGCGACTGGTTGT‑CGGTACAGGTAAGCACCA‑GATCGCCAAGCCCCGCCATGCCCATAA‑AGGT‑GGCAGGGTCG‑GCACCCAG‑CGCCGCACCAAGACGCGACATTTCAGCCAGCCCACGGGTGATCAGCGCCGTACGCGCATTCGCACCAAAACCGAT‑ACCGTCGGACATCCCCGCACCAATGGCAATAACGTTTTTCACCGCGCCGCCAAGCTGCa                                                     <  1:1190638/233‑1 (MQ=255)

                                                                                                                                                                                      gAGCATCATGCCAAAACGGCGTTTACGCGACTGGTTGT‑CGGTACAGGTAAGCACCA‑GATCGCCAAGCCCCGCCATGCCCATAA‑AGGT‑GGCAGGGTCG‑GCACCCAG‑CGCCGCACCAAGACGCGACATTTCAGCCAGCCCACGGGTGATCAGCGCCGTACGCGCATTCGCACCAAAACCGAT‑ACCGTCGGACATCCCCGCACCAATGGCAATAACGTTTTTCACCGCGCCGCCAAGCTGCa                                                     <  1:143559/239‑1 (MQ=255)

                                                                                                                                                                                         catcatGCCAAACCGGCGGTTACGCGACTGGTTGG‑CGGTACAGGTAAGCACCA‑GATCGCCAAGCCCCGCCATGCCCATAA‑AGGT‑GGCAGGGTCG‑GCACCCAG‑CGCCGCACCAAGACGCGACATTTCAGCCAGCCCACGGGTGATCAGCGCCGTACGCGCATTCGCACCAAAACCGAT‑ACCGTCGGa                                                                                                       <  1:331642/186‑1 (MQ=255)

                                                                                                                                                                                         catcatGCCAAAACGGCGGTTACGCGGCTGGTTGT‑CGGTACAGGTAAGCACCA‑GATCGCCAAGCCCCGCCATGCCCATAA‑AGGT‑GGCAGGGTCG‑GCACCCAG‑CGCCGCACCAAGACGCGACATTTCAGCCAGCCCACGGGTGATCAGCGCCGTACGCGCATTCGCACCAAAACCGAT‑ACCGTCGGACATCCCCGCACCAATGGCAATAACGTTTTTCACCGCGCCGCCAAGCTGCACGc                                                  <  1:681111/239‑1 (MQ=255)

                                                                                                                                                                                         caccaggCCAAAACGGGGGTCCCGCGATGGGTTGT‑CGGTACGGGTAAGCCCCA‑GATCGCCAGCCCCCGCCATGCCCATAA‑AGGT‑GGCAGGGTCG‑GCACCCAG‑CGCCGCACCAAGACGCGACATTTCAGCCAGCCCACGGGTGATCAGCGCCGTACGCGCATTCGCACCAAAACCGAT‑ACCGTCGGACATCCCCGCACCAATGGCAATAACGTTTTTCACCGCGCCGCCAAGCTGCACGc                                                  <  2:172493/233‑1 (MQ=255)

                                                                                                                                                                                                ccAAAACGGGGGTTACGCGACTGGTGGT‑CGGTACAGGTAAGCACCA‑GATCGCCAAGCCCCGCCATGCCCATAA‑AGGT‑GGCAGGGTCG‑GCACCCAG‑CGCCGCACCAAGACGCGACATTTCAGCCAGCCCACGGGTGATCAGCGCCGTACGCGCATTCGCACCAAAACCGAT‑ACCGTCGGACATCCCCGCACCAATGGCAATAACGTTTTTCACCGCGCCGCCAAGCTGCACGCCAATg                                             <  1:1044119/237‑1 (MQ=255)

                                                                                                                                                                                                         cggTTACGCGGCTGGTTGT‑CGGTACAAGGAAGCACCA‑AAACGCCAAGCCCCCCCATGCCCCTAA‑AAGG‑GGGAGGGTCG‑GCCCCCAG‑CGCCCCCCCAAGACGCGACATTTCAGCCAGCCCACGGGGGATCAACGCCGTACGCCCATTCGCCCCAAAACCGAT‑ACCGTCGGGCAACCCCCCCCCAATGGCAATAACGTTTTTCACCCCCCCGCCAAGCCGCCCGCCACAGCAAACCGGAtt                                  >  2:824376/1‑239 (MQ=255)

                                                                                                                                                                                                         cggTTACGCGACTGGTGGT‑CGGTACAGGTAAGCCCCA‑GATCGCCAAGCCCCGCCATGCCCATAA‑AGGT‑GGCAGGGTCG‑GCACCCAG‑CGCCGCACCAAGACGCGACATTTCAGCCAGCCCACGGGTGATCAGCGCCGTACGCGCATTCGCACCAAAACCGAT‑ACCGTCGGACATCCCCGCACCAATGGCAATAACGTTTTTCACCGCGCCGCCAAGCTGCACGCCAATGAAATCCGGAt                                   <  1:824376/238‑1 (MQ=255)

                                                                                                                                                                                                                          tgccGGTAAAGATAAGCCCCA‑GCCCGCCCGCCCCCGCCATGCCCATAA‑GGGG‑GGCAGGGTGT‑GCGCCCAG‑CGCCGCACCAACACGCGACATGTCAGCCAGCCCACGGGTGATCAGCTCCGTACGCGCATTCGCACCAAAACCGAT‑ACCGTCGGACATCCCCGCACCAATGGCAATAACGTTTTTCACCGCGCCGCCAAGCTGCACGCCAATGAAATCCGGATTGCTGTAAACGCGGaa                   <  2:1043258/235‑1 (MQ=255)

                                                                                                                                                                                                                               gTACAGGTAAGCACCA‑GATCGCCAAGCCCCGCCATGCCCATAA‑AGGT‑GGCAGGGTCG‑GCACCCAG‑CGCCGCACCAAGACGCGACATTTCAGCCAGCCCACGGGTGATCAGCGCCGTACGCGCATTCGCACCAAAACCGAT‑ACCGTCGGACATCCCCGCACCAATGGCAATAACGTTTTTCACCGCGCCGCCAAGCTGCACGCCAATGAAATCCGGATTGCTGTAAACGCGGAAACtttt             >  1:563985/1‑239 (MQ=255)

                                                                                                                                                                                                                               gTACAGGTAAGCACCA‑GATCGCCAAGCCCCGCCATGCCCATAA‑AGGT‑GGCAGGGTCG‑GCACCCAG‑CGCCGCACCAAGACGCGACATTTCAGCCAGCCCACGGGTGATCAGCGCCGTACGCGCATTCGCACCAAAACCGAT‑ACCGTCGGACATCCCCGCACCAATGGCAATAACGTTTTTCACCGC‑CCGCCAAGCTGCACGCCAATGAAATCCGGATTGCTGTAAACGCGGAAACtttt             >  1:1077633/1‑238 (MQ=255)

                                                                                                                                                                                                                                          cACCA‑GATCGCCAAGCCCCGCCATGCCCATAA‑AGGT‑GGCAGGGTCG‑GCACCCAG‑CGCCGCACCAAGACGCGACATTTCAGCCAGCCCACGGGTGATCAGCGCCGTACGCGCATTCGCACCAAAACCGAT‑ACCGTCGGACATCCCCGCACCAATGGCAATAACGTTTTTCACCGCGCCGCCAAGCTGCACGCCAATGAAATCCGGATTGCTGTAAACGCGGAAACTTTTGCCGCAGTgca  >  1:613472/1‑239 (MQ=255)

AGTAAAGTCAATGCTGCCTCGCGCGCGTTTTTTCCGCAATATAATACTTGATAAATTTCCTCGGTTATTGGCATTTCAACGCCGAAGCGATGCGCCAGTTCGCGGACTTCTTTCGTATTGCGGTAGCCTTCCACCACCTGACCAATCTTCTCCTGCGCGCTTTGTACATCCATGCCCTGACCGAGCATCATGCCAAAACGGCGGTTACGCGACTGGTTGT‑CGGTACAGGTAAGCACCA‑GATCGCCAAGCCCCGCCATGCCCATAA‑AGGT‑GGCAGGGTCG‑GCACCCAG‑CGCCGCACCAAGACGCGACATTTCAGCCAGCCCACGGGTGATCAGCGCCGTACGCGCATTCGCACCAAAACCGAT‑ACCGTCGGACATCCCCGCACCAATGGCAATAACGTTTTTCACCGCGCCGCCAAGCTGCACGCCAATGAAATCCGGATTGCTGTAAACGCGGAAACTTTTGCCGCAGTGCA  >  NC_000913/3782679‑3783150

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 13 ≤` `ATCG/ATCG` `< 24 ≤` `ATCG/ATCG` `< 39 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A