Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A2 F36 I0 R1
|
80 |
95.4 |
3476014 |
97.7% |
3396065 |
133.8 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NC_000913 |
756,303 |
C→A |
92.4% |
R133S (CGC→AGC) |
sdhA → |
succinate dehydrogenase, flavoprotein subunit |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 756,303 | 0 | C | A | 92.4%
| 228.6
/ 10.6
| 79 | R133S (CGC→AGC) | sdhA | succinate dehydrogenase, flavoprotein subunit |
| Reads supporting (aligned to +/- strand): ref base C (3/3); new base A (35/38); total (38/41) |
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.10e-01 |
TATGTGTAAAACCGGGCCGGAAGCGATTCTGGAACTCGAACACATGGGCCTGCCGTTCTCGCGTCTCGATGATGGTCGTATCTATCAACGTCCGTTTGGCGGTCAGTCGAAAAACTTCGGCGGCGAGCAGGCGGCACGCACTGCGGCAGCAGCTGACCGTACCGGTCACGCACTGTTGCACACGCTTTATCAGCAGAACCTGAAAAACCACACCACCATTTTCTCCGAGTGGTATGCGCTGGATCTGGTGAAAAACCAGGATGGCGCGGTGGTGGGTTGTA > NC_000913/756167‑756447
|
tatGTGTAAAACCGGGCCGGAAGCGATTCTGGAACTCGAACACATGGGCCTGCCGTTCTCGCGTCTCGATGATGGTCGTATCTATCAACGTCCGTTTGGCGGTCAGTCGAAAAACTTCGGCGGCGAGCAGGCGGCAAGCACTGCgg > 3:389617/1‑146 (MQ=255)
tatGTGTAAAACCGGGCCGGAAGCGATTCTGGAACTCGAACACATGGGCCTGCCGTTCTCGCGTCTCGATGATGGTCGTATCTATCAACGTCCGTTTGGCGGTCAGTCGAAAAACTTCGGCGGCGAGCAGGCGGCAAGCACTGCGgc < 8:142509/147‑1 (MQ=255)
tgtgTAAAACCGGGCCGGAAGCGATTCTGGAACTCGAACACATGGGCCTGCCGTTCTCGCGTCTCGATGATGGTCGTATCTATCAACGTCCGTTTGGCGGTCAGTCGAAAAACTTCGGCGGCGAGCAGGCGGCAAGCACTGCGgcagc < 6:45706/148‑1 (MQ=255)
tgtgTAAAACCGGGCCGGAAGCGATTCTGGAACTCGAACACATGGGCCTGCCGTTCTCGCGTCTCGATGATGGTCGTATCTATCAACGTCCGTTTGGCGGTCAGTCGAAAAACTTCGGCGGCGAGCAGGCGGCAAGCACTGCGgcag > 3:254749/1‑147 (MQ=255)
gtAAAACCGGGCCGGAAGCGATTCTGGAACTCGAACACATGGGCCTGCCGTTCTCGCGTCTCGATGATGGTCGTATCTATCAACGTCCGTTTGGCGGTCAGTCGAAAAACTTCGGCGGCGAGCAGGCGGCAAGCACTGCGGCagcagc > 1:230980/1‑148 (MQ=255)
gtAAAACCGGGCCGGAAGCGATTCTGGAACTCGAACACATGGGCCTGCCGTTCTCGCGTCTCGATGATGGTCGTATCTATCAACGTCCGTTTGGCGGTCAGTCGAAAAACTTCGGCGGCGAGCAGGCGGCAAGCACTGCGGCagcagc > 4:324849/1‑148 (MQ=255)
aaaCCGGGCCGGAAGCGATTCTGGAACTCGAACACATGGGCCTGCCGTTCTCGCGTCTCGATGATGGTCGTATCTATCAACGTCCGTTTGGCGGTCAGTCGAAAAACTTCGGCGGCGAGCAGGCGGCAAGCACTGCGGCAGCAGCTGa > 8:235544/1‑148 (MQ=255)
aaCCGGGCCGGAAGCGATTCTGGAACTCGAACACATGGGCCTGCCGTTCTCGCGTCTCGATGATGGTCGTATCTATCAACGTCCGTTTTGCGGTCAGTCGAAAAACTTCGGCGGCGAGCAGGCGGCAAGCACTGCGGcagcag < 7:300627/143‑1 (MQ=255)
aaCCGGGCCGGAAGCGATTCTGGAACTCGAACACATGGGCCTGCCGTTCTCGCGTCTCGATGATGGTCGTATCTATCAACGTCCGTTTTGCGGTCAGTCGAAAAACTTCGGCGGCGAGCAGGCGGCAAGCACTGCGGcagcag > 8:300627/1‑143 (MQ=255)
aaCCGGGCCGGAAGCGATTCTGGAACTCGAACACATGGGCCTGCCGTTCTCGCGTCTCGATGATGGTCGTATCTATCAACGTCCGTTTGGCGGTCAGTCGAAAAACTTCGGCGGCGAGCAGGCGGCACGCACTGCGGCAGCAGCTGAc > 1:94689/1‑148 (MQ=255)
aaCCGGGCCGGAAGCGATTCTGGAACTCGAACACATGGGCCTGCCGTTCTCGCGTCTCGATGATGGTCGTATCTATCAACGTCCGTTTGGCGGTCAGTCGAAAAACTTCGGCGGCGAGCAGGCGGCAAGCACTGCGGCAGCAGCTGAc > 1:125773/1‑148 (MQ=255)
aCCGGGCCGGAAGCGATTCTGGAACTCGAACACATGGGCCTGCCGTTCTCGCGTCTCGATGATGGTCGTATCTATCAACGTCCGTTTGGCGGTCAGTCGAAAAACTTCGGCGGCGAGCAGGCGGCAAGCACTGCGGCAGCAGCTGAcc > 1:239767/1‑148 (MQ=255)
cGGGCCGGAAGCGATTCTGGAACTCGAACACATGGGCCTGCCGTTCTCGCGTCTCGATGATGGTCGTATCTATCAACGTCCGTTTGGCGGTCAGTCGAAAAACTTCGGCGGCGAGCAGGCGGCACGCACTGCGGCAGCAGCTGACCGt < 2:94689/148‑1 (MQ=255)
gggCCGGAAGCGATTCTGGAACTCGAACACATGGGCCTGCCGTTCTCGCGTCTCGATGATGGTCGTATCTATCAACGTCCGTTTGGCGGTCAGTCGAAAAACTTCGGCGGCGAGCAGGCGGCAAGCACTGCGGCAGCAGCTGACCGTa < 6:111101/148‑1 (MQ=255)
gggCCGGAAGCGATTCTGGAACTCGAACACATGGGCCTGCCGTTCTCGCGTCTCGATGATGGTCGTATCTATCAACGTCCGTTTGGCGGTCAGTCGAAAAACTTCGGCGGCGAGCAGGCGGCAAGCACTGCGGCAGCAGCTGACCGTa < 4:254749/148‑1 (MQ=255)
ccGGAAGCGATTCTGGAACTCGAACACATGGGCCTGCCGTTCTCGCGTCTCGATGATGGTCGTATCTATCAACGTCCGTTTGGCGGTCAGTCGAAAAACTTCGGCGGCGAGCAGGCGGCAAGCACTGCGGCAGCAGCTGACCGTACCg < 8:293772/148‑1 (MQ=255)
gAAGCGATTCTGGAACTCGAACACATGGGCCTGCCGTTCTCGCGTCTCGATGATGGTCGTATCTATCAACGTCCGTTTGGCGGTCAGTCGAAAAACTTCGGCGGCGAGCAGGCGGCAAGCACTGCGGCAGCAGCTGACCGTACCGGTc < 3:74407/148‑1 (MQ=255)
aaGCGATTCTGGAACTCGAACACATGGGCCTGCCGTTCTCGCGTCTCGATGATGGTCGTATCTATCAACGTCCGTTTGGCGGTCAGTCGAAAAACTTCGGCGGCGAGCAGGCGGCAAGCACTGCGGCAGCAGCTGACCGTACCGGTCa > 5:403364/1‑148 (MQ=255)
aaGCGATTCTGGAACTCGAACACATGGGCCTGCCGTTCTCGCGTCTCGATGATGGTCGTATCTATCAACGTCCGTTTGGCGGTCAGTCGAAAAACTTCGGCGGCGAGCAGGCGGCAAGCACTGCGGCAGCAGCTGACCGTACCGGTCa < 7:236387/148‑1 (MQ=255)
aTTCTGGAACTCGAACACATGGGCCTGCCGTTCTCGCGTCTCGATGATGGTCGTATCTATCAACGTCCGTTTGGCGGTCAGTCGAAAAACTTCGGCGGCGAGCAGGCGGCAAGCACTGCGGCAGCAGCTGACCGTACCGGTCACGCAc > 2:11359/1‑148 (MQ=255)
tCTGGAACTCGAACACATGGGCCTGCCGTTCTCGCGTCTCGATGATGGTCGTATCTATCAACGTCCGTTTGGCGGTCAGTCGAAAAACTTCGGCGGCGAGCAGGCGGCAAGCACTGCGGCAGCAGCTGACCGTACCGGTCACGCACTg > 8:357201/1‑148 (MQ=255)
gAACTCGAACACATGGGCCTGCCGTTCTCGCGTCTCGATGATGGTCGTATCTATCAACGTCCGTTTGGCGGTCAGTCGAAAAACTTCGGCGGCGAGCAGGCGGCAAGCACTGCGGCAGCAGCTGACCGTACCGGTCACGCACTGt < 5:321433/145‑1 (MQ=255)
gAACTCGAACACATGGGCCTGCCGTTCTCGCGTCTCGATGATGGTCGTATCTATCAACGTCCGTTTGGCGGTCAGTCGAAAAACTTCGGCGGCGAGCAGGCGGCAAGCACTGCGGCAGCAGCTGACCGTACCGGTCACGCACTGTTg < 3:324849/147‑1 (MQ=255)
aCTCGAACACATGGGCCTGCCGTTCTCGCGTCTCGATGATGGTCGTATCTATCAACGTCCGTTTGGCGGTCAGTCGAAAAACTTCGGCGTCGAGCAGGCGGCAAGCACTGCGGCAGCAGCTGACCGTACCGGTCACGCACTGTTGcac < 8:317009/148‑1 (MQ=255)
cGAACACATGGGCCTGCCGTTCTCGCGTCTCGATGATGGTCGTATCTATCAACGTCCGTTTGGCGGTCAGTCGAAAAACTTCGGCGGCGAGCAGGCGGCAAGCACTGCGGCAGCAGCTGACCGTACCGGTCACGCACTGTTGCACACg > 3:268392/1‑148 (MQ=255)
cGAACACATGGGCCTGCCGTTCTCGCGTCTCGATGATGGTCGTATCTATCAACGTCCGTTTGGCGGTCAGTCGAAAAACTTCGGCGGCGAGCAGGCGGCAAGCACTGCGGCAGCAGCTGACCGTACCGGTCACGCACTGTTGCACACg > 4:272709/1‑148 (MQ=255)
cacaTGGGCCTGCCGTTCTCGCGTCTCGATGATGGTCGTATCTATCAACGTCCGTTTGGCGGTCAGTCGAAAAACTTCGGCGGCGAGCAGGCGGCAAGCACTGCGGCAGCAGCTGACCGTACCGGTCACGCACTGTTGCACACGCttt < 4:268392/148‑1 (MQ=255)
tGGGCCTGCCGTTCTCGCGTCTCGATGATGGTCGTATCTATCAACGTCCGTTTGGCGGTCAGTCGAAAAACTTCGGCGGCGAGCAGGCGGCAAGCACTGCGGCAGCAGCTGACCGTACCGGTCACGCACTGTTGCACACGCTTTAt > 1:359144/1‑146 (MQ=255)
gggCCTGCCGTTCTCGCGTCTCGATGATGGTCGTATCTATCAACGTCCGTTTGGCGGTCAGTCGAAAAACTTCGGCGGCGAGCAGGCGGCAAGCACTGCGGCAGCAGCTGACCGTACCGGTCACGCACTGTTGCACACGCTTTATcag > 1:396148/1‑148 (MQ=255)
gggCCTGCCGTTCTCGCGTCTCGATGATGGTCGTATCTATCAACGTCCGTTTGGCGGTCAGTCGAAAAACTTCGGCGGCGAGCAGGCGGCAAGCACTGCGGCAGCAGCTGACCGTACCGGTCACGCACTGTTGCACACGCTTTATcag > 6:356193/1‑148 (MQ=255)
gccggccgTTCTCGCGTCTCGATGATGGGCGTATCTATCCACGTCCGTTTGGCGGTCAGTCGAAAAACTTCGGCGGCGAGCAGGCGGCAAGCACTGCGGCAGCAGCTGACCGTACCGGTCACGCACTGTTGCACACGCTTTATcagca < 8:331074/148‑1 (MQ=255)
gCCGTTCTCGCGTCTCGATGATGGTCGTATCTATCAACGTCCGTTTGGCGGTCAGTCGAAAAACTTCGGCGGCGAGCAGGCGgcaagca > 7:251656/1‑89 (MQ=255)
gCCGTTCTCGCGTCTCGATGATGGTCGTATCTATCAACGTCCGTTTGGCGGTCAGTCGAAAAACTTCGGCGGCGAGCAGGCGgcaagca < 8:251656/89‑1 (MQ=255)
gCCGTTCTCGCGTCTCGATGATGGTCGTATCTATCAACGTCCGTTTGGCGGTCAGTCGAAAAACTTCGGCGGCGAGCAGGCGGCACGCACTGCGGCAGCAGCTGACCGTACCGGTc > 6:386536/1‑116 (MQ=255)
gCCGTTCTCGCGTCTCGATGATGGTCGTATCTATCAACGTCCGTTTGGCGGTCAGTCGAAAAACTTCGGCGGCGAGCAGGCGGCACGCACTGCGGCAGCAGCTGACCGTACCGGTc < 5:386536/116‑1 (MQ=255)
gCCGTTCTCGCGTCTCGATGATGGTCGTATCTATCAACGTCCGTTTGGCGGTCAGTCGAAAAACTTCGGCGGCGAGCAGGCGGCAAGCACTGCGGCAGCAGCTGACCGTACCGGTCACGCACTGTTGCACACGCTTTATCAGCAGAAc > 6:386181/1‑148 (MQ=255)
gCCGTTCTCGCGTCTCGATGATGGTCGTATCTATCAACGTCCGTTTGGCGGTCAGTCGAAAAACTTCGGCGGCGAGCAGGCGGCAAGCACTGCGGCAGCAGCTGACCGTACCGGTCACGCACTGTTGCACACGCTTTATCAGCAGAAc > 7:359152/1‑148 (MQ=255)
tctcGCGTCTCGATGATGGTCGTATCTATCAACGTCCGTTTGGCGGTCAGTCGAAAAACTTCGGCGGCGAGCAGGCGGCAAGCACTGCGGCAGCAGCTGACCGTACCGGTCACGCACTGTTGCACACGCTTTATCAGCAGAACCTGa > 4:43796/1‑147 (MQ=255)
cgcgTCTCGATGATGGTCGTATCTATCAACGTCCGTTTGGCGGTCAGTCGAAAAACTTCGGCGGCGAGCAGGCGGCAAGCACTGCGGCAGCAGCTGACCGTACCGGTCACGCACTGTTGCACACGCTTTATCAGCAGAACCTGaaaaa > 8:215836/1‑148 (MQ=255)
cgcgTCTCGATGATGGTCGTATCTATCAACGTCCGTTTGGCGGTCAGTCGAAAAACTTCGGCGGCGAGCAGGCGGCAAGCACTGCGGCAGCAGCTGACCGTACCGGTCACGCACTGTTGCACACGCTTTATCAGCAGAACCTGaaaaa > 7:66280/1‑148 (MQ=255)
gcgTCTCGGTGATGGTCGTATCTATCAACGTCCGTTTGGCGGTCAGTCGAAAAACTTCGGCGGCGAGCAGGCGGCAAGCACTGCGGCAGCAGCTGACCGTACCGGTCACGCACTGTTGCACACGCTTTATCAGCAGAACCTGaaaa < 4:79052/146‑1 (MQ=255)
cgTCTCGATGATGGTCGTATCTATCAACGTCCGTTTGGCGGTCAGTCGAAAAACTTCGGCGGCGAGCAGGCGGCACGCACTGCGGCAGCAGCTGACCGTACCGGTCACGCACTGTTGCACACGCTTTATCAGCAGAACCTGAAAAacc < 7:395946/148‑1 (MQ=255)
cgTCTCGATGATGGTCGTATCTATCAACGTCCGTTTGGCGGTCAGTCGAAAAACTTCGGCGGCGAGCAGGCGGCAAGCACTGCGGCAGCAGCTGACCGTACCGGTCACGCACTGTTGCACACGCTTTATCAGCAGAACCTGAAAAacc < 1:11359/148‑1 (MQ=255)
cgTCTCGATGATGGTCGTATCTATCAACGTCCGTTTGGCGGTCAGTCGAAAAACTTCGGCGGCGAGCAGGCGGCAAGCACTGCGGCAGCAGCTGACCGTACCGGTCACGCACTGTTGCACACGCTTTATCAGCAGAACCTGAAAAac > 7:394950/1‑147 (MQ=255)
gTCTCGATGATGGTCGTATCTATCAACGTCCGTTTGGCGGTCAGTCGAAAAACTTCGGCGGCGAGCAGGCGGCAAGCACTGCGGCAGCAGCTGACCGTACCGGTCACGCACTGTTGCACACGCTTTATCAGCAGAACCTGAAAAacca < 3:43796/148‑1 (MQ=255)
gTCTCGATGATGGTCGTATCTATCAACGTCCGTTTGGCGGTCAGTCGAAAAACTTCGGCGGCGAGCAGGCGGCAAGCACTGCGGCAGCAGCTGACCGTACCGGTCACGCACTGTTGCACACGCTTTATCAGCAGAACCTGAAAAacca < 1:86196/148‑1 (MQ=255)
ctcGATGATGGGCGTATCTATCAACGTCCGTTTGGCGGTCAGTCGAAAAACTTCGGCGGCGAGCAGGCGGCAAGCACTGCGGCAGCAGCTGACCGTACCGGTCACGCACTGTTGCACACGCTTTATCAGCAGAACCTGAAAAaccacc < 4:33897/148‑2 (MQ=255)
atgatgGTCGTATCTATCAACGTCCGTTTGGCGGTCAGTCGAAAAACTTCGGCGGCGAGCAGGCGGCAAGCACTGCGGCAGCAGCTGACCGTACCGGTCACGCACTGTTGCACACGCTTTATCAGCAGAACCTGAAAAaccacaccac > 2:328934/1‑148 (MQ=255)
atgGTCGTATCTATCAACGTCCGTTTGGCGGTCAGTCGAAAAACTTCGGCGGCGAGCAGGCGGCAAGCACTGCGGCAGCAGCTGACCGTACCGGGCACGCACTGTTGCACACGCTTTATCAGCAGAACCTGAAAAACCACACCACCAt < 7:235544/148‑1 (MQ=255)
atctatcAACGTCCGTTTGGCGGTCAGTCGAAAAACTTCGGCGGCGAGCAGGCGgcaagc > 6:148165/1‑60 (MQ=255)
atctatcAACGTCCGTTTGGCGGTCAGTCGAAAAACTTCGGCGGCGAGCAGGCGgcaagc < 5:148165/60‑1 (MQ=255)
atctatcAACGTCCGTTTGGCGGTCAGTCGAAAAACTTCGGCGGCGAGCAGGCGGCAAGCACTGCGGCAGCAGCTGACCGTACCGGTCACGCACTGTTGCACACGCTTTATcagc < 1:292493/115‑1 (MQ=255)
atctatcAACGTCCGTTTGGCGGTCAGTCGAAAAACTTCGGCGGCGAGCAGGCGGCAAGCACTGCGGCAGCAGCTGACCGTACCGGTCACGCACTGTTGCACACGCTTTATcagc > 2:292493/1‑115 (MQ=255)
ctatcAACGTCCGTTTGGCGGTCAGTCGAAAAACTTCGGCGGCGAGCAGGCGGCAAGCACTGCGGCAGCAGCTGACCGTACCGGTCACGCACTGTTGc > 8:313723/1‑98 (MQ=255)
ctatcAACGTCCGTTTGGCGGTCAGTCGAAAAACTTCGGCGGCGAGCAGGCGGCAAGCACTGCGGCAGCAGCTGACCGTACCGGTCACGCACTGTTGc < 7:313723/98‑1 (MQ=255)
atcAACGTCCGTTTGGCGGTCAGTCGAAAAACTTCGGCGGCGAGCAGGCGGCAAGCACTGCGGCAGCAGCTGACCGTACCGGTCACGCACTGTTGCACACGCTTTATCAGCAGAACCTGAAAAACCACACCACCATTTTCTCCGAGTg > 4:67086/1‑148 (MQ=255)
tcAACGTCCGTTTGGCGGTCAGTCGAAAAACTTCGGCGGCGAGCAGGCGGCAAGCACTGCGGCAGCAGCTGACCGTACCGGTCACGCACTg > 1:36616/1‑91 (MQ=255)
tcAACGTCCGTTTGGCGGTCAGTCGAAAAACTTCGGCGGCGAGCAGGCGGCAAGCACTGCGGCAGCAGCTGACCGTACCGGTCACGCACTg < 2:36616/91‑1 (MQ=255)
tcAACGTCCGTTTGGCGGTCAGTCGAAAAACTTCGGCGGCGAGCAGGCGGCAAGCACTGCGGCAGCAGCTGACCGTACCGGTCACGCACTGTTGCACACGCTTTATCAGCAGAACCTGAAAAACCACCCCTCCATTTTCTCCGAGTg < 5:356193/147‑1 (MQ=255)
tcAACGTCCGTTTGGCGGTCAGTCGAAAAACTTCGGCGGCGAGCAGGCGGCAAGCACTGCGGCAGCAGCTGACCGTACCGGTCACGCACTGTTGCACACGCTTTATCAGCAGAACCTGAAAAACCACACCACCCTTTTCTCCgcg < 2:239767/145‑3 (MQ=255)
tcAACGTCCGTTTGGCGGTCAGTCGAAAAACTTCGGCGGCGAGCAGGCGGCAAGCACTGCGGCAGCAGCTGACCGTACCGGTCACGCACTGTTGCACACGCTTTATCAGCAGAACCTGAAAAACCACACCACCATTTTCTCCGa < 5:386181/144‑1 (MQ=255)
tcAACGTCCGTTTGGCGGTCAGTCGAAAAACTTCGGCGGCGAGCAGGCGGCAAGCACTGCGGCAGCAGCTGACCGGACCGGTCACGCACTGTTGCACACGCTTTATCAGCAGAACCTGAAAAACCACACCACCATTTTCTCCGAGTgg < 2:230980/148‑1 (MQ=255)
cGTCCGTTTGGCGGTCAGTCGAAAAACTTCGGCGGCGAGCAGGCGGCAAGCACTGCGGCAGCAGCTGACCGTACCGGTCACGCACTg > 6:328982/1‑87 (MQ=255)
cGTCCGTTTGGCGGTCAGTCGAAAAACTTCGGCGGCGAGCAGGCGGCAAGCACTGCGGCAGCAGCTGACCGTACCGGTCACGCACTg < 5:328982/87‑1 (MQ=255)
cGTTTGGCGGTCAGTCGAAAAACTTCGGCGGCGAGCAGGCGGCAAGCACTGCGGCAGCAGCTGACCGTACCGGTCACGCACTGTTGCACACGCTTTATCAGCAGAACCTGAAAAACCACACCACCATTTTCTCCGAGTGGTATGCGCt < 2:359144/148‑1 (MQ=255)
cGTTTGGCGGTCAGTCGAAAAACTTCGGCGGCGAGCAGGCGGCAAGCACTGCGGCAGCAGCTGACCGTACCGGTCACGCACTGTTGCACACGCTTTATCAGCAGAACCTGAAAAACCACACCACCATTTTCTCCGAGTGGTATGCGCt < 2:396148/148‑1 (MQ=255)
ggCGGTCAGTCGAAAAACTTCGGCGGCGAGCAGGCGGCACGCACTGCGGCAGCAGCTGACCGTACCGGTCACGCACTGTTGCACACGCTTTATCAGCAGAACCTGAAAAACCACACCACCATTTTCTCCGAGTGGTATGCGCTGGATc > 1:442776/1‑148 (MQ=255)
gTCAGTCGAAAAACTTCGGCGGCGAGCAGGCGGCAAGCACTGCGGCAGCAGCTGACCGTACCGGTCACGCACTGTTGCACACGCTTTATCAGCAGAACCTGAAAAACCACACCACCATTTTCTCCGAGTGGTATGCGCTGGATCTGGt < 3:67086/148‑1 (MQ=255)
tCGAAAAACTTCGGCGGCGAGCAGGCGGCAAGCACTGCGGCAGCAGCTGACCGTACCGGTCACGCACTGTTGCACACGCTTTATCAGCAGAACCTGAAAAACCACACCACCATTTTCTCCGAGTGGTATGCGCTGGATCTGGTGaaa > 7:114864/1‑147 (MQ=255)
aaaaaCTTCGGCGGCGAGCAGGCGGCAAGCACTGCGGCAGCAGCTGACCGTACCGGTCACGCACTGTTGCACACGCTTTATCAGCAGAACCTGAAAAACCACACCACCATTTTCTCCGAGTgg > 3:324539/1‑123 (MQ=255)
aaaaaCTTCGGCGGCGAGCAGGCGGCAAGCACTGCGGCAGCAGCTGACCGTACCGGTCACGCACTGTTGCACACGCTTTATCAGCAGAACCTGAAAAACCACACCACCATTTTCTCCGAGTgg < 4:324539/123‑1 (MQ=255)
aaaaaCTTCGGCGGCGACCAGGCGGCAAGCACTGCGGCAGAACCTGACCGTACAGGTCACGCACTCATGCACACGCTTTATCAGCAGAACCTCAAAAACCACACCACCATTTTATCCGAGAGGTAAGCGCTGGATCTGGTGAAAAAc > 3:37437/1‑147 (MQ=255)
aaaaCTTCGGCGGCGAGCAGGCGGCAAGCACTGCGGCAGCAGCTGACCGTACCGGTCACGCACTGTTGCACACGCTTTATCAGCAGAACCTGAAAAACCACACCACCATTTTCTCCGAGTGGTATGCGCTGGATCTGGTGAAAAACCa < 3:119308/148‑1 (MQ=255)
aaaCTTCGGCGGCGAGCAGGCGGCAAGCACTGCGGCAGCAGCTGACCGTACCGGTCACGCACTGTTGCACACGCTTTATCAGCAGAACCTGAAAACCCACACCCCCATTTTCTCCGAGTGGTATGCGCTGGATCTGGTGAAAAACCAg > 2:307381/1‑148 (MQ=255)
aaaCTTCGGCGGCGAGCAGGCGGCAAGCACTGCGGCAGCAGCTGACCGTACCGGTCACGCACTGTTGCACACGCTTTATCAGCAGAACCTGAAAAACCACACCACCATTTTCTCCGAGTGGTATGCGCTGGATCTGGTGAAAAACCAg > 4:41090/1‑148 (MQ=255)
aaCTTCGGCGGCGAGCAGGCGGCAAGCACTGCGGCAGCAGCTGACCGTACCGGTCACGCACTGTTGCACACGCTTTATCAGCAGAACCTGAAAAACCACACCACCATTTTCTCCGAGTGGTATGCGCTGGATCTGGTGAAAAACCAgg < 7:215836/148‑1 (MQ=255)
cTTCGGCGGCGAGCAGGCGGCAAGCACTGCGGCAGCAGCTGACCGTACCGGTCACGCACTGTTGCACACGCTTTATCAGCAGAACCTGAAAAACCACACCACCATTTTCTCCGAGTGGTATGCGCTGGATCTGGTGAAAAACCAGGAt < 6:403364/148‑1 (MQ=255)
gcggcgAGCAGGCGGCAAGCACTGCGGCAGCAGCTGACCGTACCGGTCACGCACTGTTGCACACGCTTTATCAGCAGAACCTGAAAAACCACACCACCATTTTCTCCGAGTGGTATGCGCTGGATCTGGTGAAAAACCAGGATGgcgc < 3:272709/148‑1 (MQ=255)
ggcgAGCAGGCGGCAAGCACTGCGGCAGCAGCTGACCGTACCGTTCACGCACTGTTGCACACGCTTTATCAGCAGAACCTGAAAAACCACACCACCATTTTCTCCGAGTGGTATGCGCTGGATCTGGTGAAAAACCAGGATGGCGCgg < 8:359152/148‑1 (MQ=255)
cgAGCAGGCGGCAAGCACTGCGGCAGCAGCTGACCGTACCGGTCACGCACTGTTGCACACGCTTTATCAGCAGAACCTGAAAAACCACACCACCATTTTCTCCGAGTGGTATGCGCTGGATCTGGTGAAAAACCAGGATGGCGCggtg > 8:49084/1‑148 (MQ=255)
cgAGCAGGCGGCAAGCACTGCGGCAGCAGCTGACCGTACCGGTCACGCACTGTTGCACACGCTTTATCAGCAGAACCTGAAAAACCACACCACCATTTTCTCCGAGTGGTATGCGCTGGATCTGGTGAAAAACCAGGATGGCGCggtg < 8:66280/148‑1 (MQ=255)
aGGCGGCAAGCACTGCGGCAGCAGCTGACCGTACCGGTCACGCACTGTTGCACACGCTTTATCAGCAGAACCTGAAAAACCACACCACCATTTTCTCCGAGTGGTATGCGCTGGATCTGGTGAAAAACCAGGATGGCGCGGTGGTggg > 1:99946/1‑148 (MQ=255)
ggcggcAAGCACTGCGGCAGCAGCTGACCGTACCGGTCACGCACTGTTGCACACGCTTTATCAGCAGAACCTGAAAAACCACACCACCATTTTCTCCGAGTGGTATGCGCTGGATCTGGTGAAAAACCAGGATGGCGCGGTGGTGGGt < 7:357201/148‑1 (MQ=255)
gcaagcacTGCGGCAGCAGCTGACCGTACCGGTCACGCACTGTTGCACACGCTTTATCAGCAGAACCTGAAAAACCACACCACCATTTTCTCCGAGTGGTATGCGCTGGATCTGGTGAAAAACCAGGATGGCGCGGTGGTGGGTTGTa < 8:394950/148‑1 (MQ=255)
cgcacTGCGGCAGCAGCTGACCGTACCGGTCACGCACTGTTGCACACGCTTTATCAGCAGAACCTGAAAAACCACACCACCATTTTCTCCGAGTGGTATgc < 8:141519/101‑1 (MQ=255)
cgcacTGCGGCAGCAGCTGACCGTACCGGTCACGCACTGTTGCACACGCTTTATCAGCAGAACCTGAAAAACCACACCACCATTTTCTCCGAGTGGTATgc > 7:141519/1‑101 (MQ=255)
|
TATGTGTAAAACCGGGCCGGAAGCGATTCTGGAACTCGAACACATGGGCCTGCCGTTCTCGCGTCTCGATGATGGTCGTATCTATCAACGTCCGTTTGGCGGTCAGTCGAAAAACTTCGGCGGCGAGCAGGCGGCACGCACTGCGGCAGCAGCTGACCGTACCGGTCACGCACTGTTGCACACGCTTTATCAGCAGAACCTGAAAAACCACACCACCATTTTCTCCGAGTGGTATGCGCTGGATCTGGTGAAAAACCAGGATGGCGCGGTGGTGGGTTGTA > NC_000913/756167‑756447
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
TATATGTGTAAAACCGGGCCGGAAGCGATTCTGGAACTCGAACACATGGGCCTGCCGTTCTCGCGTCTCGATGATGGTCGTATCTATCAACGTCCGTTTGGCGGTCAGTCGAAAAACTTCGGCGGCGAGCAGGCGGCACGCACTGCGGCAGCAGCTGACCGTACCGGTCACGCACTGTTGCACACGCTTTATCAGCAGAACCTGAAAAACCACACCACCATTTTCTCCGAGTGGTATGCGCTGGATCTGGTGAAAAACCAGGATGGCGCGGTGGTGGGTTGTACCGCA > NC_000913/756165‑756452
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TATATGTGTAAAACCGGGCCGGAAGCGATTCTGGAACTCGAACACATGGGCCTGCCGTTCTCGCGTCTCGATGATGGTCGTATCTATCAACGTCCGTTTGGCGGTCAGTCGAAAAACTTCGGCGGCGAGCAGGCGGCAAGCACTGCGGC > NB501016:230:HFVJLAFXY:2:21308:14713:20376/1‑149 (MQ=60)
TATGTGTAAAACCGGGCCGGAAGCGATTCTGGAACTCGAACACATGGGCCTGCCGTTCTCGCGTCTCGATGATGGTCGTATCTATCAACGTCCGTTTGGCGGTCAGTCGAAAAACTTCGGCGGCGAGCAGGCGGCAAGCACTGCGGCAGC > NB501016:230:HFVJLAFXY:2:21109:18427:7701/1‑150 (MQ=60)
GTGTAAAACCGGGCCGGAAGCGATTCTGGAACTCGAACACATGGGCCTGCCGTTCTCGCGTCTCGATGATGGTCGTATCTATCAACGTCCGTTTGGCGGTCAGTCGAAAAACTTCGGCGGCGAGCAGGCGGCAAGCACTGCGGCAGCAGCT > NB501016:230:HFVJLAFXY:1:21102:14619:3541/1‑151 (MQ=60)
AAAACCGGGCCGGAAGCGATTCTGGAACTCGAACACATGGGCCTGCCGTTCTCGCGTCTCGATGATGGTCGTATCTATCAACGTCCGTTTTGCGGTCAGTCGAAAAACTTCGGCGGCGAGCAGGCGGCAAGCACTGCGGCAGCAGCT < NB501016:230:HFVJLAFXY:4:21412:21453:7484/147‑1 (MQ=60)
AAAACCGGGCCGGAAGCGATTCTGGAACTCGAACACATGGGCCTGCCGTTCTCGCGTCTCGATGATGGTCGTATCTATCAACGTCCGTTTGGCGGTCAGTCGAAAAACTTCGGCGGCGAGCAGGCGGCACGCACTGCGGCAGCAGCTGACC > NB501016:230:HFVJLAFXY:1:11203:12612:12974/1‑151 (MQ=60)
AAAACCGGGCCGGAAGCGATTCTGGAACTCGAACACATGGGCCTGCCGTTCTCGCGTCTCGATGATGGTCGTATCTATCAACGTCCGTTTGGCGGTCAGTCGAAAAACTTCGGCGGCGAGCAGGCGGCAAGCACTGCGGCAGCAGCTGACC > NB501016:230:HFVJLAFXY:1:11208:9747:18682/1‑151 (MQ=60)
AAACCGGGCCGGAAGCGATTCTGGAACTCGAACACATGGGCCTGCCGTTCTCGCGTCTCGATGATGGTCGTATCTATCAACGTCCGTTTGGCGGTCAGTCGAAAAACTTCGGCGGCGAGCAGGCGGCAAGCACTGCGGCAGCCGCTGACCG > NB501016:230:HFVJLAFXY:1:21103:8721:8646/1‑151 (MQ=60)
GGAAGCGATTCTGGAACTCGAACACATGGGCCTGCCGTTCTCGCGTCTCGATGATGGTCGTATCTATCAACGTCCGTTTGGCGGTCAGTCGAAAAACTTCGGCGGCGAGCAGGCGGCAAGCACTGCGGCAGCAGCTGACCGTACCGGTCAC < NB501016:230:HFVJLAFXY:2:11202:20989:7860/151‑1 (MQ=60)
GGAAGCGATTCTGGAACTCGAACACATGGGCCTGCCGTTCTCGCGTCTCGATGATGGTCGTATCTATCAACGTCCGTTTGGCGGTCAGTCGAAAAACTTCGGCGGCGAGCAGGCGGCAAGCACTGCGGCAGCAGCTGACCGTACCGGTCAC > NB501016:230:HFVJLAFXY:3:21608:10897:10278/1‑151 (MQ=60)
GAAGCGATTCTGGAACTCGAACACATGGGCCTGCCGTTCTCGCGTCTCGATGATGGTCGTATCTATCAACGTCCGTTTGGCGGTCAGTCGAAAAACTTCGGCGGCGAGCAGGCGGCAAGCACTGCGGCAGCAGCTGACCGTACCGGTCACG < NB501016:230:HFVJLAFXY:4:21402:24348:11375/151‑1 (MQ=60)
GGAACTCGAACACATGGGCCTGCCGTTCTCGCGTCTCGATGATGGTCGTATCTATCAACGTCCGTTTGGCGGTCAGTCGAAAAACTTCGGCGGCGAGCAGGCGGCAAGCACTGCGGCAGCAGCTGACCGTACCGGTCACGCACTGTTGCA < NB501016:230:HFVJLAFXY:2:21210:24411:2292/150‑1 (MQ=60)
GGAACTCGAACACATGGGCCTGCCGTTCTCGCGTCTCGATGATGGTCGTATCTATCAACGTCCGTTTGGCGGTCAGTCGAAAAACTTCGGCGGCGAGCAGGCGGCAAGCACTGCGGCAGCAGCTGACCGTACCGGTCACGCACTGTTG < NB501016:230:HFVJLAFXY:3:21507:12492:6317/148‑1 (MQ=60)
CTCGAACACATGGGCCTGCCGTTCTCGCGTCTCGATGATGGTCGTATCTATCAACGTCCGTTTGGCGGTCAGTCGAAAAACTTCGGCGGCGAGCAGGCGGCAAGCACTGCGGCAGCAGCTGACCGTACCGGTCACGCACTGTTGCACACGC > NB501016:230:HFVJLAFXY:2:21111:4717:16465/1‑151 (MQ=60)
CATGGGCCTGCCGTTCTCGCGTCTCGATGATGGTCGTATCTATCAACGTCCGTTTGGCGGTCAGTCGAAAAACTTCGGCGGCGAGCAGGCGGCAAGCACTGCGGCAGCAGCTGACCGTACCGGTCACGCACTGTTGCACACGCTTTATC > NB501016:230:HFVJLAFXY:1:21210:5661:15134/1‑149 (MQ=60)
ATGGGCCTGCCGTTCTCGCGTCTCGATGATGGTCGTATCTATCAACGTCCGTTTGGCGGTCAGTCGAAAAACTTCGGCGGCGAGCAGGCGGCAAGCACTGCGGCAGCAGCTGACCGTACCGGTCACGCACTGTTGCACACGCTTTATCAGC > NB501016:230:HFVJLAFXY:1:21304:15929:18414/1‑151 (MQ=60)
CTGCCGTTCTCGCGTCTCGATGATGGTCGTATCTATCAACGTCCGTTTGGCGGTCAGTCGAAAAACTTCGGCGGCGAGCAGGCGGCACGCACTGCGGCAGCAGCTGACCGTACCGGTCAC < NB501016:230:HFVJLAFXY:3:21605:26426:16545/120‑1 (MQ=60)
CTGCCGTTCTCGCGTCTCGATGATGGTCGTATCTATCAACGTCCGTTTGGCGGTCAGTCGAAAAACTTCGGCGGCGAGCAGGCGGCAAGCACTGCGGCAGCAGCTGACCGTACCGGTCACGCACTGTTGCACACGCTTTATCAGCAGAACC > NB501016:230:HFVJLAFXY:4:21510:26150:13412/1‑151 (MQ=60)
CTGCCGTTCTCGCGTCTCGATGATGGTCGTATCTATCAACGTCCGTTTGGCGGTCAGTCGAAAAACTTCGGCGGCGAGCAGGCGGCAAGCACT > NB501016:230:HFVJLAFXY:4:21404:7680:19770/1‑93 (MQ=60)
CTCGCGTCTCGATGATGGTCGTATCTATCAACGTCCGTTTGGCGGTCAGTCGAAAAACTTCGGCGGCGAGCAGGCGGCAAGCACTGCGGCAGCAGCTGACCGTACCGGTCACGCACTGTTGCACACGCTTTATCAGCAGAACCTGAAAAAC > NB501016:230:HFVJLAFXY:4:11411:17686:2267/1‑151 (MQ=60)
CGCGTCTCGATGATGGTCGTATCTATCAACGTCCGTTTGGCGGTCAGTCGAAAAACTTCGGCGGCGAGCAGGCGGCAAGCACTGCGGCAGCAGCTGACCGTACCGGTCACGCACTGTTGCACACGCTTTATCAGCAGAACCTGAAAAACC > NB501016:230:HFVJLAFXY:4:21604:4947:10944/1‑150 (MQ=60)
GCGTCTCGATGATGGTCGTATCTATCAACGTCCGTTTGGCGGTCAGTCGAAAAACTTCGGCGGCGAGCAGGCGGCACGCACTGCGGCAGCAGCTGACCGTACCGGTCACGCACTGTTGCACACGCTTTATCAGCAGAACCTGAAAAACCAC < NB501016:230:HFVJLAFXY:4:21604:7964:14141/151‑1 (MQ=60)
GCGTCTCGATGATGGTCGTATCTATCAACGTCCGTTTGGCGGTCAGTCGAAAAACTTCGGCGGCGAGCAGGCGGCAAGCACTGCGGCAGCAGCTGACCGTACCGGTCACGCACTGTTGCACACGCTTTATCAGCAGAACCTGAAAAACCAC < NB501016:230:HFVJLAFXY:1:11102:21951:12723/151‑1 (MQ=60)
CGTCTCGATGATGGTCGTATCTATCAACGTCCGTTTGGCGGTCAGTCGAAAAACTTCGGCGGCGAGCAGGCGGCAAGCACTGCGGCAGCAGCTGACCGTACCGGTCACGCACTGTTGCACACGCTTTATCAGCAGAACCTGAAAAACCACA < NB501016:230:HFVJLAFXY:2:11108:4004:15421/151‑1 (MQ=60)
CGTCTCGATGATGGTCGTATCTATCAACGTCCGTTTGGCGGTCAGTCGAAAAACTTCGGCGGCGAGCAGGCGGCAAGCACTGCGGCAGCAGCTGACCGTACCGGTCACGCACTGTTGCACACGCTTTATCAGCAGAACCTGAAAAACCACA < NB501016:230:HFVJLAFXY:1:11202:18719:5200/151‑1 (MQ=60)
GATGGTCGTATCTATCAACGTCCGTTTGGCGGTCAGTCGAAAAACTTCGGCGGCGAGCAGGCGGCAAGCACTGCGGCAGCAGCTGACCGTACCGGGCACGCACTGTTGCACACGCTTTATCAGCAGAACCTGAAAAACCACACCACCATTT < NB501016:230:HFVJLAFXY:4:21402:23237:8624/151‑1 (MQ=60)
GTATCTATCAACGTCCGTTTGGCGGTCAGTCGAAAAACTTCGGCGGCGAGCAGGCGGCAAGCACTGCGGCAGCAGCTGACCGTACCGGTCACGCACTGTTGCACACGCTTTATCAGCAG < NB501016:230:HFVJLAFXY:1:21111:10266:12994/119‑1 (MQ=60)
GTATCTATCAACGTCCGTTTGGCGGTCAGTCGAAAAACTTCGGCGGCGAGCAGGCGGCAAGCAC < NB501016:230:HFVJLAFXY:3:11602:6565:2327/64‑1 (MQ=60)
ATCTATCAACGTCCGTTTGGCGGTCAGTCGAAAAACTTCGGCGGCGAGCAGGCGGCAAGCACTGCGGCAGCAGCTGACCGTACCGGTCACGCACTGTTGCAC < NB501016:230:HFVJLAFXY:4:21503:18048:3744/102‑1 (MQ=60)
TATCAACGTCCGTTTGGCGGTCAGTCGAAAAACTTCGGCGGCGAGCAGGCGGCAAGCACTGCGGCAGCAGCTGACCGTACCGGTCACGCACTGTT > NB501016:230:HFVJLAFXY:1:11106:6533:7463/1‑95 (MQ=60)
ATCAACGTCCGTTTGGCGGTCAGTCGAAAAACTTCGGCGGCGAGCAGGCGGCAAGCACTGCGGCAGCAGCTGACCGTACCGGTCACGCACTGTTGCACACGCTTTATCAGCAGAACCTGAAAAACCACCCCTCCATTTTCTCCGAGTGGT < NB501016:230:HFVJLAFXY:3:21601:19359:3516/150‑1 (MQ=60)
ATCAACGTCCGTTTGGCGGTCAGTCGAAAAACTTCGGCGGCGAGCAGGCGGCAAGCACTGCGGCAGCAGCTGACCGTACCGGTCACGCACTGTTGCACACGCTTTATCAGCAGAACCTGAAAAACCACACCACCATTTTCTCCGAGT < NB501016:230:HFVJLAFXY:3:21605:19988:15416/147‑1 (MQ=60)
AACGTCCGTTTGGCGGTCAGTCGAAAAACTTCGGCGGCGAGCAGGCGGCAAGCACTGCGGCAGCAGCTGACCGTACCGGTCACGCACTGTT < NB501016:230:HFVJLAFXY:3:21508:5596:10873/91‑1 (MQ=60)
TTGGCGGTCAGTCGAAAAACTTCGGCGGCGAGCAGGCGGCACGCACTGCGGCAGCAGCTGACCGTACCGGTCACGCACTGTTGCACACGCTTTATCAGCAGAACCTGAAAAACCACACCACCATTTTCTCCGAGTGGTATGCGCTGGATCT > NB501016:230:HFVJLAFXY:1:21312:20846:12707/1‑151 (MQ=60)
GGTCAGTCGAAAAACTTCGGCGGCGAGCAGGCGGCAAGCACTGCGGCAGCAGCTGACCGTACCGGTCACGCACTGTTGCACACGCTTTATCAGCAGAACCTGAAAAACCACACCACCATTTTCTCCGAGTGGTATGCGCTGGATCTGGTGA < NB501016:230:HFVJLAFXY:2:11201:21103:1605/151‑1 (MQ=60)
AGTCGAAAAACTTCGGCGGCGAGCAGGCGGCAAGCACTGCGGCAGCAGCTGACCGTACCGGTCACGCACTGTTGCACACGCTTTATCAGCAGAACCTGAAAAACCACACCACCATTTTCTCCGAGTGGTATGCGCTGGATCTGGTGAAAA > NB501016:230:HFVJLAFXY:4:11506:18077:14407/1‑150 (MQ=60)
GTCGAAAAACTTCGGCGGCGAGCAGGCGGCAAGCACTGCGGCAGCAGCTGACCGTACCGGTCACGCACTGTTGCACACGCgttttgagggtctgctgataaagcgtgtgcaacagtgcgtgaccgggtcggtcagcgggtgccagatcggt > NB501016:230:HFVJLAFXY:4:11512:8151:8791/1‑80 (MQ=60)
CGAAAAACTTCGGCGGCGAGCAGGCGGCAAGCACTGCGGCAGCAGCTGACCGTACCGGTCACGCACTGTTGCACACGCTTTATCAGCAGAACCTGAAAAACCACACCACCActcggagaaaatggtggtgtggttttt < NB501016:230:HFVJLAFXY:1:11311:25432:9079/138‑28 (MQ=60)
CGAAAAACTTCGGCGGCGAGCAGGCGGCAAGCACTGCGGCAGCAGCTGACCGTACCGGTCACGCACTGTTGCACACGCTTTATCAGCAGAACCTGAAAAACCACACCACCATTTTCTCCGAGTGGTA > NB501016:230:HFVJLAFXY:2:21209:22077:20277/1‑127 (MQ=60)
CGAAAAACTTCGGCGGCGACCAGGCGGCAAGCACTGCGGCAGAACCTGACCGTACAGGTCACGCACTCATGCACACGCTTTATCAGCAGAACCTCAAAAACCACACCACCATTTTATCCGAGAGGTAAGCGCTGGATCTGGTGAAAAACC > NB501016:230:HFVJLAFXY:2:11107:25111:13023/1‑150 (MQ=60)
AAAAACTTCGGCGGCGAGCAGGCGGCAAGCACTGCGGCAGCAGCTGACCGTACCGGTCACGCACTGTTGCACACGCTTTATCAGCAGAACCTGAAAAACCACACCACCATTTTCTCCGAGTGGTATGCGCTGGATCTGGTGAAAAACCAGG < NB501016:230:HFVJLAFXY:2:11210:23360:8615/151‑1 (MQ=60)
AAACTTCGGCGGCGAGCAGGCGGCAAGCACTGCGGCAGCAGCTGACCGTACCGGTCACGCACTGTTGCACACGCTTTATCAGCAGAACCTGAAAAACCACACCACCATTTTCTCCGAGTGGTATGCGCTGGATCTGGTGAAAAACCAGGAT < NB501016:230:HFVJLAFXY:4:11611:20890:3567/151‑1 (MQ=60)
GGCGGCGAGCAGGCGGCAAGCACTGCGGCAGCAGCTGACCGTACCGGTCACGCACTGTTGCACACGCTTTATCAGCAGAACCTGAAAAACCACACCACCATTTTCTCCGAGTGGTATGCGCTGGATCTGGTGAAAAACCAGGATGGCGCGG < NB501016:230:HFVJLAFXY:2:21112:16721:12710/151‑1 (MQ=60)
GCAGGCGGCAAGCACTGCGGCAGCAGCTGACCGTACCGGTCACGCACTGTTGCACACGCTTTATCAGCAGAACCTGAAAAACCACACCACCATTTTCTCCGAGTGGTATGCGCTGGATCTGGTGAAAAACCAGGATGGCGCGGTGGTGGGT > NB501016:230:HFVJLAFXY:1:11204:3877:10723/1‑151 (MQ=60)
AGGCGGCAAGCACTGCGGCAGCAGCTGACCGTACCGGTCACGCACTGTTGCACACGCTTTATCAGCAGAACCTGAAAAACCACACCACCATTTTCTCCGAGTGGTATGCGCTGGATCTGGTGAAAAACCAGGATGGCGCGGTGGTGGGTTG < NB501016:230:HFVJLAFXY:4:21510:24295:7282/151‑1 (MQ=60)
CACGCACTGCGGCAGCAGCTGACCGTACCGGTCACGCACTGTTGCACACGCTTTATCAGCAGAACCTGAAAAACCACACCACCATTTTCTCCGAGTGGTATGCGC > NB501016:230:HFVJLAFXY:4:11510:24510:19339/1‑105 (MQ=60)
CAAGCACTGCGGCAGCAGCTGACCGTACCGGTCACGCACTGTTGCACACGCTTTATCAGCAGAACCTGAAAAACCACACCACCATTTTCTCCGAGTGGTATGCGCTGGATCT < NB501016:230:HFVJLAFXY:4:11501:24572:5533/112‑1 (MQ=60)
AAGCACTGCGGCAGCAGCTGACCGTACCGGTCACGCACTGTTGCACACGCTTTATCAGCAGAACCTGAAAAACCACACCACCATTTTCTCCGAGTGGTATGCGCTGGATCTGGTGAAAAACCAGGATGGCGCGGTGGTGGGTTGTACCGCC > NB501016:230:HFVJLAFXY:1:11105:19071:18842/1‑151 (MQ=60)
AAGCACTGCGGCAGCAGCTGACCGTACCGGTCACGCACTGTTGCACACGCTTTATCAGCAGAACCTGAAAAACCACACCACCATTTTCTCCGAGTGGTATGCGCTGGATCTGGTGAAAAACCAGGATGGCGCGGTGGTGGGTTGTACCGC > NB501016:230:HFVJLAFXY:3:11406:16563:12297/1‑150 (MQ=60)
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TATATGTGTAAAACCGGGCCGGAAGCGATTCTGGAACTCGAACACATGGGCCTGCCGTTCTCGCGTCTCGATGATGGTCGTATCTATCAACGTCCGTTTGGCGGTCAGTCGAAAAACTTCGGCGGCGAGCAGGCGGCACGCACTGCGGCAGCAGCTGACCGTACCGGTCACGCACTGTTGCACACGCTTTATCAGCAGAACCTGAAAAACCACACCACCATTTTCTCCGAGTGGTATGCGCTGGATCTGGTGAAAAACCAGGATGGCGCGGTGGTGGGTTGTACCGCA > NC_000913/756165‑756452
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
