Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I1 R1	1696	279.3	15874187	97.8%	15524954	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	1,847,298	A→G	K146K (AAA→AAG)	sppA →	protease IV

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	1,847,298	0	A	G	100.0%	573.6 / NA	184	K146K (AAA→AAG)	sppA	protease IV
Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (98/86); total (98/86)

Only 100 of 191 total aligned reads displayed.

TGTGATGGATCTGAAAAACTTCGCAGGCGGCGACCAACCGTCTATGCAGTACATCGGCAAAGCTCTGAAAGAGTTTCGTGACAGCGGGAAACCGGTTTATGCCGTTGGCGAGAACTACAGCCAGGGGCAATATTATCTCGCCAGTTTCGCCAATAAAATTTGGCTGTCTCCGCAAGGCGT  >  NC_000913/1847208‑1847387

tgtgATGGATCTGAAAAACTTCGCAGGCGGCGACCAACCGTCTATGCAGTACATCGGCAAAGCTCTGAAAGAGTTTCGTGACAGCGGGAAGcc                                                                                         >  2:6976457/1‑93 (MQ=255)

 gtgATGGATCTGAAAAACTTCGCAGGCGGCGACCAACCGTCTATGCAGTACATCGGCAAAGCTCTGAAAGAGTTTCGTGACAGCGGGAAGCCg                                                                                        >  2:3323596/1‑93 (MQ=255)

  tgATGGATCTGAAAAACTTCGCAGGCGGCGACCAACCGTCTATGCAGTACATCGGCAAAGCTCTGAAAGAGTTTCGTGACAGCGGGAAGCCgg                                                                                       >  2:4553316/1‑93 (MQ=255)

    aTGGATCTGAAAAACTTCGCAGGCGGCGACCAACCGTCTATGCAGTACATCGGCAAAGCTCTGAAAGAGTTTCGTGACAGCGGGAAGCCGGtt                                                                                     <  1:2263577/93‑1 (MQ=255)

    aTGGATCTGAAAAACTTCGCAGGCGGCGACCAACCGTCTATGCAGTACATCGGCAAAGCTCTGAAAGAGTTTCGTGACAGCGGGAAGCCGGtt                                                                                     >  1:7481347/1‑93 (MQ=255)

      gtaNCTGAAAAACTTCGCAGGCGCNNCCCAACCGTCTATGCAGTACATCGGCAAAGCTCTGAAAGAGTGTCGTGACAGCGGGAAGCCGGNTTa                                                                                   <  2:7547633/91‑1 (MQ=255)

      ggATCTGAAAAGCTTCGCAGGCGGCGACCAACCGTCTATGCAGTACATCGGCAAAGCTCTGAAAGAGTTTCGTGACAGCGGGAAGCCGGTTTa                                                                                   <  1:6572965/93‑1 (MQ=255)

      ggATCTGAAAAACTTCGCAGGCGGCGACCAACCGTCTATGCAGTACATCGGCAAAGCTCTGAAAGAGTTTCGTGACAGCGGGAAGCCGGTTTa                                                                                   <  1:3639649/93‑1 (MQ=255)

      ggATCTGAAAAACTTCGCAGGCGGCGACCAACCGTCTATGCAGTACATCGGCAAAGCTCTGAAAGAGTTTCGTGACAGCGGGAAGCCGGTTTa                                                                                   <  1:7176076/93‑1 (MQ=255)

      ggATCTGAAAAACTTCGCAGGCGGCGACCAACCGTCTATGCAGTACATCGGCAAAGCTCTGAAAGAGTTTCGTGACAGCGGGAAGCCGGTTTa                                                                                   >  1:844519/1‑93 (MQ=255)

       gATCTGAAAAACTTCGCAGGCGGCGACCAACCGTCTATGCAGTACATCGGCAAAGCTCTGAAAGAGTTTCGTGACAGCGGGAAGCCGGTTTAt                                                                                  <  1:5915862/93‑1 (MQ=255)

         tCTGAAAAACTTCGCAGGCGGCGACCAACCGTCTATGCAGTACATCGGCAAAGCTCTGAAAGAGTTTCGTGACAGCGGGAAGCCGGTTTATGc                                                                                >  1:7830429/1‑93 (MQ=255)

           tGAAAAACTTCGCAGGCGGCGACCAACCGTCTATGCAGTACATCGGCAAAGCTCTGAAAGAGTTTCGTGACAGCGGGAAGCCGGTTTATGCCg                                                                              <  1:4364892/93‑1 (MQ=255)

            gAAAAACTTCGCAGGCGGCGACCAACCGTCTATGCAGTACATCGGCAAAGCTCTGAAAGAGTTTCGTGACAGCGGGAAGCCGGTTTATGCCGt                                                                             <  2:221745/93‑1 (MQ=255)

               aaaCTTCGCAGGCGGCGACCAACCGTCTATGCAGTACATCGGCAAAGCTCTGAAAGAGTTTCGTGACAGCGGGAAGCCGGTTTATGCCGTTgg                                                                          >  2:1660307/1‑93 (MQ=255)

                 aCTTCGCAGGCGGCGACCAACCGTCTATGCAGTACATCGGCAAAGCTCTGAAAGAGTTTCGTGACAGCGGGAAGCCGGTTTATGCCGTTGGCg                                                                        >  2:7287230/1‑93 (MQ=255)

                  cTTCGCAGGCGGCGACCAACCGTCTATGCAGTACATCGGCAAAGCTCTGAAAGAGTTTCGGGACAGCGGGAAGCCGGTTTATGCCGTTCGCga                                                                       >  1:1254239/1‑93 (MQ=255)

                    tCGCAGGCGGCGACCAACCGTCTATGCAGTACATCGGCAAAGCTCTGAAAGAGTTTCGTGACAGCGGGAAGCCGGTTTATGCCGTTGGCgaga                                                                     >  2:3653274/1‑93 (MQ=255)

                     cGCAGGCGGCGACCAACCGTCTATGCAGTACATCGGCAAAGCTCTGAAAGAGTTTCGTGACAGCGGGAAGCCGGTTTATGCCGTTGGCGAGaa                                                                    <  2:823349/93‑1 (MQ=255)

                     cGCAGGCGGCGACCAACCGTCTATGCAGTACATCGGCAAAGCTCTGAAAGAGTTTCGTGACAGCGGGAAGCCGGTTTATGCCGTTGGCGAGaa                                                                    <  2:5404245/93‑1 (MQ=255)

                      gCAGGCGGCGACCAACCGTCTATGCAGTACATCGGCAAAGCTCTGAAACAGTTTCGTGACAGCGGGAAGCCGGTTTATGCCGTTGGCGAGAAc                                                                   >  2:7226868/1‑93 (MQ=255)

                        aGGCGGCGACCAACCGTCTATGCAGTACATCGGCAAAGCTCTGAAAGAGTTTCGTGACAGCGGGAAGCCGGTTTATGCCGTTGGCGAGAACTa                                                                 <  2:4448027/93‑1 (MQ=255)

                         ggcggcGACCAACCGTCTATGCAGTACATCGGCAAAGCTCTGAAAGAGTTTCGTGACAGCGGGAAGCCGGTTTATGCCGTTGGCGAGAACTAc                                                                >  2:939273/1‑93 (MQ=255)

                         ggcggcGACCAACCGTCTATGCAGTACATCGGCAAAGCTCTGAAAGAGTTTCGTGACAGCGGGAAGCCGGTTTATGCCGTTGGCGAGAACTAc                                                                >  1:5730843/1‑93 (MQ=255)

                         ggcggcGACCAACCGTCTATGCAGTACATCGGCAAAGCTCTGAAAGAGTTTCGTGACAGCGGGAAGCCGGTTTATGCCGTTGGCGAGAACTAc                                                                <  1:3164033/93‑1 (MQ=255)

                          gcggcgACCAACCGTCTATGCAGTACATCGGCAAAGCTCTGAAAGAGTTTCGTGACAGCGGGAAGCCGGTTTATGCCGTTGGCGAGAACTACa                                                               <  2:4721023/93‑1 (MQ=255)

                          gcggcgACCAACCGTCTATGCAGTACATCGGCAAAGCTCTGAAAGAGTTTCGTGACAGCGGGAAGCCGGTTTATGCCGTTGGCGAGAACTACa                                                               <  2:3518350/93‑1 (MQ=255)

                          gcggcgACCAACCGTCTATGCAGTACATCGGCAAAGCTCTGAAAGAGTTTCGTGACAGCGGGAAGCCGGTTTATGCCGTTGGCGAGAACTACa                                                               <  1:2379030/93‑1 (MQ=255)

                             gcgACCAACCGTCTATGCAGTACATCGGCAAAGCTCTGAAAGAGTTTCGTGACAGCGGGCACCCGGTTTATGCCGTTGGCGAGAACTACAGcc                                                            >  1:3130445/1‑93 (MQ=255)

                             gcgACCAACCGTCTATGCAGTACATCGGCAAAGCTCTGAAAGAGTTTCGTGACAGCGGGAAGCCGGTTTATGCCGTTGGCGAGAACTACAGcc                                                            >  1:2063556/1‑93 (MQ=255)

                             gcgACCAACCGTCTATGCAGTACATCGGCAAAGCTATGAAAGAGTTTCGTGACAGCGGGAAGCCGGTTTATGCCGTTGGCGAGAACTACAGcc                                                            >  2:7798687/1‑93 (MQ=255)

                              cgACCAACCGTCTATGCAGTACATCGGCAAAGCTCTGAAAGAGTTTCGTGACAGCGGGAAGCCGGTTTATGCCGTTGGCGAGAACTACAGCCa                                                           <  2:1011749/93‑1 (MQ=255)

                               gaccgaccGTCTATGCAGTACATCGGCAAAGCTCTGAAAGAGTTTCGTGACAGCGGGAAGCCGGTTTATGCCGTTGGCGAGAACTACAGCCAg                                                          >  1:873248/1‑93 (MQ=255)

                               gACCAACCGTCTATGCAGTACATCGGCAAAGCTCTGAAAGAGTTTCGTGACAGCGGGAAGCCGGTTTATGCCGTTGGCGAGAACTACAGCCAg                                                          >  1:1108982/1‑93 (MQ=255)

                               gACCAACCGTCTATGCAGTACATCGGCAAAGCTCTGAAAGAGTTTCGTGACAGCGGGAAGCCGGTTTATGCCGTTGGCGAGAACTACAGCCAg                                                          >  1:2444874/1‑93 (MQ=255)

                               gACCAACCGTCTATGCAGTACATCGGCAAAGCTCTGAAAGAGTTTCGTGACAGCGGGAAGCCGGTTTATGCCGTTGGCGAGAACTACAGCCAg                                                          <  1:6725716/93‑1 (MQ=255)

                                aCCAACCGTCTATGCAGTACATCGGCAAAGCTCTGAAAGAGTTTCGTGACAGCGGGAAGCCGGTTTATGCCGTTGGCGAGAACTACAGCCAgg                                                         >  1:6756817/1‑93 (MQ=255)

                                  cAACCGTCTATGCAGTACATCGGCAAAGCTCTGAAAGAGTTTCGTGACAGCGGGAAGCCGGTTTATGCCGTTGGCGAGAACTACAGCCAgggg                                                       >  1:1980952/1‑93 (MQ=255)

                                   aaCCGTCTATGCAGTACATCGGCAAAGCTCTGAAAGAGTTTCGTGACAGCGGGAAGCCGGTTTATGCCGTTGGCGAGAACTACAGCCAGGGGc                                                      <  1:1437451/93‑1 (MQ=255)

                                    aCCGTCTATGCAGTACATCGGCAAAGCTCTGAAAGAGTTTCGTGACAGCGGGAAGCCGGTTTATGCCGTTGGCGAGAACTACAGCCAGGGGCa                                                     >  1:3234813/1‑93 (MQ=255)

                                     ccGTCTATGCAGTACATCGGCAAAGCTCTGAAAGAGTTTCGTGACAGCGGGAAGCCGGTTTATGCCGTTGGCGAGAACTACAGCCAGGGGCaa                                                    >  1:3776899/1‑93 (MQ=255)

                                      cGTCTATGCAGTACATCGGCAAAGCTCTGAAAGAGTTTCGTGACAGCGGGAAGCCGGTTTATGCCGTTGGCGAGAACTACAGCCAGGGGCAat                                                   <  2:4088693/93‑1 (MQ=255)

                                       gTCTATGCAGTACATCGGCAAAGCTCTGAAAGAGTTTCGTGACAGCGGGAAGCCGGTTTATGCCGTTGGCGAGAACTACAGCCAGGGGCAata                                                  >  1:7474143/1‑93 (MQ=255)

                                        tCTATGCAGTACATCGGCAAAGCTCTGAAAGAGTTTCGTGACAGCGGGAAGCCGGTTTATGCCGTTGGCGAGAACTACAGCCAGGGGCAatat                                                 >  1:5205293/1‑93 (MQ=255)

                                        tCTATGCAGTACATCGGCAAAGCTCTGAAAGAGTTTCGTGACAGCGGGAAGCCGGTTTATGCCGTTGGCGAGAACTACAGCCAGGGGCAatat                                                 >  1:341677/1‑93 (MQ=255)

                                        tCTATGCAGTACATCGGCAAAGCTCTGAAAGAGTTTCGTGACAGCGGGAAGCCGGTTTATGCCGTTGGCGAGAACTACAGCCAGGGGCAatat                                                 >  1:6180688/1‑93 (MQ=255)

                                        tCTATGCAGTACATCGGCAAAGCTCTGAAAGAGTTTCGTGACAGCGGGAAGCCGGTTTATGCCGTTGGCGAGAACTACAGCCAGGGGCAatat                                                 >  1:2778324/1‑93 (MQ=255)

                                         cTATGCAGTACATCGGCAAAGCTCTGAAAGAGTTTCGTGACAGCGGGAAGCCGGTTTATGCCGTTGGCGAGAACTACAGCCAGGGGCAAtatt                                                <  1:4282167/93‑1 (MQ=255)

                                          tATGCAGTACATCGGCAAAGCTCTGAAAGAGTTTCGTGACAGCGGGAAGCCGGTTTATGCCGTTGGCGAGAACTACAGCCAGGGGCAAtatta                                               >  1:7679013/1‑93 (MQ=255)

                                          tATGCAGTACATCGGCAAAGCTCTGAAAGAGTTTCGTGACAGCGGGAAGCCGGTTTATGCCGTTGGCGAGAACTACAGCCAGGGGCAAtatta                                               <  2:2719005/93‑1 (MQ=255)

                                          tATGCAGTACATCGGCAAAGCTCTGAAAGAGTTTCGTGACAGCGGGAAGCCGGTTTATGCCGTTGGCGAGAACTACAGCCAGGGGCAAtatta                                               <  1:6118802/93‑1 (MQ=255)

                                           aTGCAGTACATCGGCAAAGCTCTGAAAGAGTTTCGTGACAGCGGGAAGCCGGTTTATGCCGTTGGCGAGAACTACAGCCAGGGGCAAtattat                                              <  2:1364945/93‑1 (MQ=255)

                                           aTGCAGTACATCGGCAAAGCTCTGAAAGAGTTTCGTGACAGCGGGAAGCCGGTTTATGCCGTTGGCGAGAACTACAGCCAGGGGCAAtattat                                              <  2:1364944/93‑1 (MQ=255)

                                            tGCAGTACATCGGCAAAGCTCTGAAAGAGTTTCGTGACAGCGGGAAGCCGGTTTATGCCGTTGGCGAGAACTACAGCCAGGGGCAATATTAtc                                             <  2:3252005/93‑1 (MQ=255)

                                             gCAGTACATCGGCAAAGCTCTGAAAGAGTTTCGTGACAGCGGGAAGCCGGTTTATGCCGTTGGCGAGAACTACAGCCAGGGGCAATATTAtct                                            <  2:6833583/93‑1 (MQ=255)

                                             gCAGTACATCGGCAAAGCTCTGAAAGAGTTTCGTGACAGCGGGAAGCCGGTTTATGCCGTTGGCGAGAACTACAGCCAGGGGCAATATTAtct                                            <  1:5845685/93‑1 (MQ=255)

                                              cAGTACATCGGCAAAGCTCTGAAAGAGTTTCGTGACAGCGGGAAGCCGGTTTATGCCGTTGGCGAGAACTACAGCCAGGGGCAATATTAtctc                                           <  1:7510588/93‑1 (MQ=255)

                                              cAGTACATCGGCAAAGCTCTGAAAGAGTTTCGTGACAGCGGGAAGCCGGTTTATGCCGTTGGCGAGAACTACAGCCAGGGGCAATATTAtctc                                           <  1:4000243/93‑1 (MQ=255)

                                                gTACATCGGCAAAGCTCTGAAAGAGTTTCGTGACAGCGGGAAGCCGGTTTATGCCGTTGGCGAGAACTACAGCCAGGGGCAATATTATCTCGc                                         >  1:2525062/1‑93 (MQ=255)

                                                 tACATCGGCAAAGCTCTGAAAGAGTTTCGTGACAGCGGGAAGCCGGTTTATGCCGTTGGCGAGAACTACAGCCAGGGGCAATATTATCTCGcc                                        <  1:3860747/93‑1 (MQ=255)

                                                  gcATCGGCAAAGCTCTGAAAGAGTTTCGTGACAGCGGGAAGCCGGTTTATGCCGTTGGCGAGAACTACAGCCAGGGGCAATATTATCTCGCCa                                       <  2:1920283/92‑1 (MQ=255)

                                                     tCGGCAAAGCTCTGAAAGAGTTTCGTGACAGCGGGAAGCCGGTTTATGCCGTTGGCGAGAACTACAGCCAGGGGCAATATTATCTCGCCAggt                                    >  2:919730/1‑91 (MQ=255)

                                                     tCGGCAAAGCTCTGAAAGAGTTTCGTGACAGCGGGAAGCCGGGTTATGCCGTTGGCGAGAACTACAGCCAGGGGCAATATTATCTCGCCAGtt                                    >  1:5353818/1‑93 (MQ=255)

                                                       ggCAAAGCTCTGAAAGAGTTTCGTGACAGCGGGAAGCCGGTTTATGCCGTTGGCGAGAACTACAGCCAGGGGCAATATTATCTCGCCAGTTTc                                  >  2:1274932/1‑93 (MQ=255)

                                                       ggCAAAGCTCTGAAAGAGTTTCGTGACAGCGGGAAGCCGGTTTATGCCGTTGGCGAGAACTACAGCCAGGGGCAATATTATCTCGCCAGTTTc                                  <  2:7497932/93‑1 (MQ=255)

                                                          aaaGCTCTGAAAGAGTTTCGTGACAGCGGGAAGCCGGTTTATGCCGTTGGCGAGAACTACAGCCAGGGGCAATATTATCTCGCCAGTTTCGcc                               >  2:2906886/1‑93 (MQ=255)

                                                          aaaGCTCTGAAAGAGTTTCGTGACAGCGGGAAGCCGGTTTATGCCGTTGGCGAGAACTACAGCCAGGGGCAATATTATCTCGCCAGTTTCGcc                               >  2:6255073/1‑93 (MQ=255)

                                                              ctctGAAAGAGTTTCGTGACAGCGGGAAGCCGGTTTATGCCGTTGGCGAGAACTACAGCCAGGGGCAATATTATCTCGCCAGTTTCGCCAATa                           <  2:5080790/93‑1 (MQ=255)

                                                               tctGAAAGAGTTTCGTGACAGCGGGAAGCCGGTTTATGCCGTTGGCGATAACTAGAGCCAGGGGCAGTGTTATCTCGCCGGTTTCGCGGATaa                          >  2:2437705/1‑93 (MQ=255)

                                                               tctGAAAGAGTTTCGTGACAGCGGGAAGCCGGTTTATGCCGTTGGCGAGAACTACAGCCAGGGGCAATATTATCTCGCCAGTTTCGCCAATaa                          >  2:3300490/1‑93 (MQ=255)

                                                               tctGAAAGAGTTTCGTGACAGCGGGAAGCCGGTTTATGCCGTTGGCGAGAACTACAGCCAGGGGCAATATTATCTCGCCAGTTTCGCCAATaa                          >  1:7704663/1‑93 (MQ=255)

                                                                ctGAAAGAGTTTCGTGACAGCGGGAAGCCGGTTTATGCCGTTGGCGAGAACTACAGCCAGGGGCAATATTATCTCGCCAGTTTCGCCAATaaa                         <  2:7714227/93‑1 (MQ=255)

                                                                 tGAAAGAGTTTCGTGACAGCGGGAAGCCGGTTTATGCCGTTGGCGAGAACTACAGCCAGGGGCAATATTATCTCGCCAGTTTCGCCAATaaaa                        <  2:5731381/93‑1 (MQ=255)

                                                                 tGAAAGAGTTTCGTGACAGCGGGAAGCCGGTTTATGCCGTTGGCGAGAACTACAGCCAGGGGCAATATTATCTCGCCAGTTTCGCCAATaaaa                        >  2:4868564/1‑93 (MQ=255)

                                                                  gAAAGAGTTTCGTGACAGCGGGAAGCCGGTTTATGCCGTTGGCGAGAACTACAGCCAGGGGCAATATTATCTCGCCAGTTTCGCCAATAAAAt                       <  2:3360886/93‑1 (MQ=255)

                                                                   aaaGAGTTTCGTGACAGCGGGAAGCCGGTTTATGCCGTTGGCGAGAACTACAGCCAGGGGCAATATTATCTCGCCAGTTTCGCCAATAAAAtt                      <  1:2121371/93‑1 (MQ=255)

                                                                    aaGAGTTTCGTGACAGCGGGAAGCCGGTTTATGCCGTTGGCGAGAACTACAGCCAGGGGCAATATTATCTCGCCAGTTTCGCCAATAAAAttt                     <  1:5129243/93‑1 (MQ=255)

                                                                    aaGAGTTTCGTGACAGCGGGAAGCCGGTTTATGCCGTTGGCGAGAACTACAGCCAGGGGCAATATTATCTCGCCAGTTTCGCCAATAAAAttt                     >  1:432323/1‑93 (MQ=255)

                                                                      gagTTTCGTGACAGCGGGAAGCCGGTTTATGCCGTTGGCGAGAACTACAGCCAGGGGCAATATTATCTCGCCAGTTTCGCCAATAAAATTTgg                   <  2:4650479/93‑1 (MQ=255)

                                                                      gagTTTCGTGACAGCGGGAAGCCGGTTTATGCCGTTGGCGAGAACTACAGCCAGGGGCAATATTATCTCGCCAGTTTCGCCAATAAAATTTgg                   >  1:4459226/1‑93 (MQ=255)

                                                                      gagTTTCGTGACAGCGGGAAGCCGGTTTATGCCGTTGGCGAGAACTACAGCCAGGGGCAATATTATCTCGCCAGTTTCGCCAATAAAATTTgg                   <  2:7432263/93‑1 (MQ=255)

                                                                        gTTTCGTGACAGCGGGAAGCCGGTTTATGCCGTTGGCGAGAACTACAGCCAGGGGCAATATTATCTCGCCAGTTTCGCCAATAAAATTTGGCt                 <  1:3894052/93‑1 (MQ=255)

                                                                          ttCGTGACAGCGGGAAGCCGGTTTATGCCGTTGGCGAGAACTACAGCCAGGGGCAATATTATCTCGCCAGTTTCGCCAATAAAATTTGGCTGt               >  1:5832084/1‑93 (MQ=255)

                                                                           tCGTGACAGCGGGAAGCCGGTTTATGCCGTTGGCGAGAACTACAGCCAGGGGCAATATTATCTCGCCAGTTTCGCCAATAAAATTTGGCTGtc              <  1:290675/93‑1 (MQ=255)

                                                                           tCGTGACAGCGGGAAGCCGGTTTATGCCGTTGGCGAGAACTACAGCCAGGGGCAATATTATCTCGCCAGTTTCGCCAATAAAATTTGGCTGtc              <  2:6508529/93‑1 (MQ=255)

                                                                             gTGACAGCGGGAAGCCGGTTTATGCCGTTGGCGAGAACTACAGCCAGGGGCAATATTATCTCGCCAGTTTCGCCAATAAAATTTGGCTGtctc            >  2:3161638/1‑93 (MQ=255)

                                                                             gTGACAGCGGGAAGCCGGTTTATGCCGTTGGCGAGAACTACAGCCAGGGGCAATATTATCTCGCCAGTTTCGCCAATAAAATTTGGCTGtctc            >  2:2931624/1‑93 (MQ=255)

                                                                             gTGACAGCGGGAAGCCGGTTTATGCCGTTGGCGAGAACTACAGCCAGGGGCAATATTATCTCGCCAGTTTCGCCAATAAAATTTGGCTGtctc            <  1:1646186/93‑1 (MQ=255)

                                                                              tGACAGCGGGAAGCCGGTTTATGCCGTTGGCGAGAACTACAGCCAGGGGCAATATTATCTCGCCAGTTTCGCCAATAAAATTTGGCTGTCTcc           <  2:3873978/93‑1 (MQ=255)

                                                                               gACAGCGGGAAGCCGGTTTATGCCGTTGGCGAGAACTACAGCCAGGGGCAATATTATCTCGCCAGTTTCGCCAATAAAATTTGGCTGTCTCCg          <  2:5963451/93‑1 (MQ=255)

                                                                                  aGCGGGAAGCCGGTTTATGCCGTTGGCGAGAACTACAGCCAGGGGCAATATTATCTCGCCAGTTTCGCCGATAAAATTTGGCTGTCTCCGCaa       >  2:4299182/1‑93 (MQ=255)

                                                                                  aGCGGGAAGCCGGTTTATGCCGTTGGCGAGAACTACAGCCAGGGGCAATATTATCTCGCCAGTTTCGCCAATAAAATTTGGCTGTCTCCGCaa       <  1:6462089/93‑1 (MQ=255)

                                                                                   gCGGGAAGCCGGTTTATGCCGTTGGCGAGAACTACAGCCAGGGGCAATATTATCTCGCCAGTTTCGCCAATAAAATTTGGCTGTCTCCGCAAg      <  1:3023584/93‑1 (MQ=255)

                                                                                   gCGGGAAGCCGGTTTATGCCGTTGGCGAGAACTACAGCCAGGGGCAATATTATCTCGCCAGTTTCGCCAATAAAATTTGGCTGTCTCCGCAAg      >  1:776889/1‑93 (MQ=255)

                                                                                    cGGGAAGCCGGTTTATGCCGTTGGCGAGAACTACAGCCAGGGGCAATATTATCTCGCCAGTTTCGCCAATAAAATTTGGCTGTCTCCGCAAgg     >  2:2118613/1‑93 (MQ=255)

                                                                                     gggAAGCCGGTTTATGCCGTTGGCGAGAACTACAGCCAGGGGCAATATTATCTCGCCAGTTTCGCCAATAAAATTTGGCTGTCTCCGCAAGGc    >  1:475532/1‑93 (MQ=255)

                                                                                     gggAAGCCGGTTTATGCCGTTGGCGAGAACTACAGCCAGGGGCAATATTATCTCGCCAGTTTCGCCAATAAAATTTGGCTGTCTCCGCAAGGc    <  1:6347954/93‑1 (MQ=255)

                                                                                      ggAAGCCGGTTTATGCCGTTGGCGAGAACTACAGCCAGGGGCAATATTATCTCGCCAGTTTCGCCAATAAAATTTGGCTGTCTCCGCAAGGCg   >  1:4186133/1‑93 (MQ=255)

                                                                                       gAAGCCGGTTTATGCCGTTGGCGAGAACTACAGCCAGGGGCAATATTATCTCGCCAGTTTCGCCAATAAAATTTGGCTGTCTCCGCAAGGCGt  <  2:6071576/93‑1 (MQ=255)

                                                                                       gAAGCCGGTTTATGCCGTTGGCGAGAACTACAGCCAGGGGCAATATTATCTCGCCAGTTTCGCCAATAAAATTTGGCTGTCTCCGCAAGGCGt  >  2:3547357/1‑93 (MQ=255)

TGTGATGGATCTGAAAAACTTCGCAGGCGGCGACCAACCGTCTATGCAGTACATCGGCAAAGCTCTGAAAGAGTTTCGTGACAGCGGGAAACCGGTTTATGCCGTTGGCGAGAACTACAGCCAGGGGCAATATTATCTCGCCAGTTTCGCCAATAAAATTTGGCTGTCTCCGCAAGGCGT  >  NC_000913/1847208‑1847387

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 23 ≤` `ATCG/ATCG` `< 30 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

TATTGTGATGGATCTGAAAAACTTCGCAGGCGGCGACCAACCGTCTATGCAGTACATCGGCAAAGCTCTGAAAGAGTTTCGTGACAGCGGGAAACCGGTTTATGCCGTTGGCGAGAACTACAGCCAGGGGCAATATTATCTCGCCAGTTTCGCCAATAAAATTTGGCTGTCTCCGCAAGGCGTGGTT  >  NC_000913/1847205‑1847391

TATTGTGATGGATCTGAAAAACTTCGCAGGCGGCGACCAACCGTCTATGCAGTACATCGGCAAAGCTCTGAAAGAGTTTCGTGACAGCGGGAAG                                                                                               <  SRR4302543.6682454/94‑1 (MQ=60)

TATTGTGATGGATCTGAAAAACTTCGCAGGCGGCGACCAACCGTCTATGCAGTACATCGGCAAAGCTCTGAAAGAGTTTCGTGACAGCGGGAAG                                                                                               >  SRR4302543.4477594/1‑94 (MQ=60)

TATTGTGATGGATCTGAAAAACTTCGCAGGCGGCGACCAACCGTCTATGCAGTACATCGGCAAAGCTCTGAAAGAGTTTCGTGACAGCGGGAAG                                                                                               <  SRR4302543.7491910/94‑1 (MQ=60)

TATTGTGATGGATCTGAAAAACTTCGCAGGCGGCGACCAACCGTCTATGCAGTACATCGGCAAAGCTCTGAAAGAGTTTCGTGACAGCGGGAAG                                                                                               <  SRR4302543.4254252/94‑1 (MQ=60)

      GATGGATCTGAAAAACTTCGCAGGCGGCGACCAACCGTCTATGCAGTACATCGGCAAAGCTCTGAAAGAGTTTCGTGACAGCGGGAAGCCGGTT                                                                                         >  SRR4302543.3710741/1‑94 (MQ=60)

      GATGGATCTGAAAAACTTCGCAGGCGGCGACCAACCGTCTATGCAGTACATCGGCAAAGCTCTGAAAGAGTTTCGTGACAGCGGGAAGCCGGTT                                                                                         >  SRR4302543.1369851/1‑94 (MQ=60)

      GATGGATCTGAAAAACTTCGCAGGCGGCGACCAACCGTCTATGCAGTACATCGGCAAAGCTCTGAAAGAGTTTCGTGACAGCGGGAAGCCGGTT                                                                                         >  SRR4302543.7552961/1‑94 (MQ=60)

       ATGGATCTGAAAAACTTCGCAGGCGGCGACCAACCGTCTATGCAGTACATCGGCAAAGCTCTGAAAGAGTTTCGTGACAGCGGGAAGCCGGTTT                                                                                        >  SRR4302543.7557620/1‑94 (MQ=60)

       ATGGATCTGAAAAACTTCGCAGGCGGCGACCAACCGTCTATGCAGTACATCGGCAAAGCTCTGAAAGAGTTTCGTGACAGCGGGAAGCCGGTTT                                                                                        <  SRR4302543.2284232/94‑1 (MQ=60)

       ATGGATCTGAAAAACTTCGCAGGCGGCGACCAACCGTCTATGCAGTACATCGGCAAAGCTCTGAAAGAGTTTCGTGACAGCGGGAAGCCGGTTT                                                                                        <  SRR4302543.2284231/94‑1 (MQ=60)

        TGGATCTGAAAAACTTCGCAGGCGGCGACCAACCGTCTATGCAGTACATCGGCAAAGCTCTGAAAGAGTTTCGTGACAGCGGGAAGCCGGTTTA                                                                                       >  SRR4302543.852000/1‑94 (MQ=60)

        TGGATCTGAAAAACTTCGCAGGCGGCGACCAACCGTCTATGCAGTACATCGGCAAAGCTCTGAAAGAGTTTCGTGACAGCGGGAAGCCGGTTTA                                                                                       >  SRR4302543.851999/1‑94 (MQ=60)

         GGATCTGAAAAGCTTCGCAGGCGGCGACCAACCGTCTATGCAGTACATCGGCAAAGCTCTGAAAGAGTTTCGTGACAGCGGGAAGCCGGTTTAT                                                                                      <  SRR4302543.6634847/94‑1 (MQ=60)

         GGATCTGAAAAACTTCGCAGGCGGCGACCAACCGTCTATGCAGTACATCGGCAAAGCTCTGAAAGAGTTTCGTGACAGCGGGAAGCCGGTTTAT                                                                                      <  SRR4302543.7245741/94‑1 (MQ=60)

         GGATCTGAAAAACTTCGCAGGCGGCGACCAACCGTCTATGCAGTACATCGGCAAAGCTCTGAAAGAGTTTCGTGACAGCGGGAAGCCGGTTTAT                                                                                      <  SRR4302543.3671677/94‑1 (MQ=60)

         GGATCTGAAAAACTTCGCAGGCGGCGACCAACCGTCTATGCAGTACATCGGCAAAGCTCTGAAAGAGTTTCGTGACAGCGGGAAGCCGGTTTAT                                                                                      <  SRR4302543.3053223/94‑1 (MQ=60)

          GATCTGAAAAACTTCGCAGGCGGCGACCAACCGTCTATGCAGTACATCGGCAAAGCTCTGAAAGAGTTTCGTGACAGCGGGAAGCCGGTTTATG                                                                                     <  SRR4302543.5969888/94‑1 (MQ=60)

          GATCTGAAAAACTTCGCAGGCGGCGACCAACCGTCTATGCAGTACATCGGCAAAGCTCTGAAAGAGTTTCGTGACAGCGGGAAGCCGGTTTATG                                                                                     <  SRR4302543.3159629/94‑1 (MQ=60)

           ATCTGAAAAACTTCGCAGGCGGCGACCAACCGTCTATGCAGTACATCGGCAAAGCTCTGAAAGAGTTTCGTGACAGCGGGAAGCCGGTTTATGC                                                                                    >  SRR4302543.7904162/1‑94 (MQ=60)

              TGAAAAACTTCGCAGGCGGCGACCAACCGTCTATGCAGTACATCGGCAAAGCTCTGAAAGAGTTTCGTGACAGCGGGAAGCCGGTTTATGCCGT                                                                                 <  SRR4302543.4404431/94‑1 (MQ=60)

                 AAAACTTCGCAGGCGGCGACCAACCGTCTATGCAGTACATCGGCAAAGCTCTGAAAGAGTTTCGTGACAGCGGGAAGCCGGTTTATGCCGTTGG                                                                              <  SRR4302543.7942709/94‑1 (MQ=60)

                  AAACTTCGCAGGCGGCGACCAACCGTCTATGCAGTACATCGGCAAAGCTCTGAAAGAGTTTCGTGACAGCGGGAAGCCGGTTTATGCCGTTGGC                                                                             <  SRR4302543.7772943/94‑1 (MQ=60)

                    ACTTCGCAGGCGGCGACCAACCGTCTATGCAGTACATCGGCAAAGCTCTGAAAGAGTTTCGGGACAGCGGGAAGCCGGTTTATGCCGTTCGCGA                                                                           >  SRR4302543.1265479/1‑94 (MQ=60)

                     CTTCGCAGGCGGCGACCAACCGTCTATGCAGTACATCGGCAAAGCTCTGAAAGAGTTTCGTGACAGCGGGAAGCCGGTTTATGCCGTTGGCGAG                                                                          <  SRR4302543.5200791/94‑1 (MQ=60)

                         cgagggcgccgccaaccggtcttggcgttaatcggcaaaagcttggaaggggTTCGTGACAGCGGGAAGCCGGTTTATGCCGTTGGCGAGAACT                                                                      <  SRR4302543.2001310/42‑1 (MQ=60)

                         GCAGGCGGCGACCAACCGTCTATGCAGTACATCGGCAAAGCTCTGAAAGAGTTTCGTGACAGCGGGAAGCCGGTTTATGCCGTTGGCGAGAACT                                                                      <  SRR4302543.2111755/94‑1 (MQ=60)

                         GCAGGCGGCGACCAACCGTCTATGCAGTACATCGGCAAAGCTCTGAAAGAGATTCGTGACAGCGGGAAGCCGGTTTATGCCGTTGGCGAGAACT                                                                      >  SRR4302543.7695859/1‑94 (MQ=60)

                           AGGCGGCGACCAACCGTCTATGCAGTACATCGGCAAAGCTCTGAAAGAGTTTCGTGACAGCGGGAAGCCGGTTTATGCCGTTGGCGAGAACTAC                                                                    >  SRR4302543.6980149/1‑94 (MQ=60)

                           AGGCGGCGACCAACCGTCTATGCAGTACATCGGCAAAGCTCTGAAAGAGTTTCGTGACAGCGGGAAGCCGGTTTATGCCGTTGGCGAGAACTAC                                                                    >  SRR4302543.5783133/1‑94 (MQ=60)

                            GGCGGCGACCAACCGTCTATGCAGTACATCGGCAAAGCTCTGAAAGAGTTTCGTGACAGCGGGAAGCCGGTTTATGCCGTTGGCGAGAACTACA                                                                   <  SRR4302543.7289292/94‑1 (MQ=60)

                            GGCGGCGACCAACCGTCTATGCAGTACATCGGCAAAGCTCTGAAAGAGTTTCGTGACAGCGGGAAGCCGGTTTATGCCGTTGGCGAGAACTACA                                                                   <  SRR4302543.3192519/94‑1 (MQ=60)

                             GCGGCGACCAACCGTCTATGCAGTACATCGGCAAAGCTCTGAAAGAGTTTCGTGACAGCGGGAAGCCGGTTTATGCCGTTGGCGAGAACTACAG                                                                  <  SRR4302543.2973544/94‑1 (MQ=60)

                             GCGGCGACCAACCGTCTATGCAGTACATCGGCAAAGCTCTGAAAGAGTTTCGTGACAGCGGGAAGCCGGTTTATGCCGTTGGCGAGAACTACAG                                                                  <  SRR4302543.2400578/94‑1 (MQ=60)

                               GGCGACCAACCGTCTATGCAGTACATCGGCAAAGCTCTGAAAGAGTTTCGTGACAGCGGGCACCCGGTTTATGCCGTTGGCGAGAACTACAGCC                                                                >  SRR4302543.3158601/1‑94 (MQ=60)

                               GGCGACCAACCGTCTATGCAGTACATCGGCAAAGCTCTGAAAGAGTTTCGTGACAGCGGGAAGCCGGTTTATGCCGTTGGCGAGAACTACAGCC                                                                >  SRR4302543.2082011/1‑94 (MQ=60)

                                GCGACCAACCGTCTATGCAGTACATCGGCAAAGCTCTGAAAGAGTTTCGTGACAGCGGGAAGCCGGTTTATGCCGTTGGCGAGAACTACAGCCA                                                               <  SRR4302543.5665137/94‑1 (MQ=60)

                                 CGACCGACCGTCTATGCAGTACATCGGCAAAGCTCTGAAAGAGTTTCGTGACAGCGGGAAGCCGGTTTATGCCGTTGGCGAGAACTACAGCCAG                                                              >  SRR4302543.881028/1‑94 (MQ=60)

                                 CGACCAACCGTCTATGCAGTACATCGGCAAAGCTCTGAAAGAGTTTCGTGACAGCGGGAAGCCGGTTTATGCCGTTGGCGAGAACTACAGCCAG                                                              >  SRR4302543.1118988/1‑94 (MQ=60)

                                 CGACCAACCGTCTATGCAGTACATCGGCAAAGCTCTGAAAGAGTTTCGTGACAGCGGGAAGCCGGTTTATGCCGTTGGCGAGAACTACAGCCAG                                                              >  SRR4302543.389849/1‑94 (MQ=60)

                                 CGACCAACCGTCTATGCAGTACATCGGCAAAGCTCTGAAAGAGTTTCGTGACAGCGGGAAGCCGGTTTATGCCGTTGGCGAGAACTACAGCCAG                                                              >  SRR4302543.2466910/1‑94 (MQ=60)

                                  GACCAACCGTCTATGCAGTACATCGGCAAAGCTCTGAAAGAGTTTCGTGACAGCGGGAAGCCGGTTTATGCCGTTGGCGAGAACTACAGCCAGG                                                             >  SRR4302543.6820631/1‑94 (MQ=60)

                                  GACCAACCGTCTATGCAGTACATCGGCAAAGCTCTGAAAGAGTTTCGTGACAGCGGGAAGCCGGTTTATGCCGTTGGCGAGAACTACAGCCAGG                                                             <  SRR4302543.4814215/94‑1 (MQ=60)

                                  GACCAACCGTCTATGCAGTACATCGGCAAAGCTCTGAAAGAGTTTCGTGACAGCGGGAAGCCGGTTTATGCCGTTGGCGAGAACTACAGCCAGG                                                             >  SRR4302543.6820630/1‑94 (MQ=60)

                                  GACCAACCGTCTATGCAGTACATCGGCAAAGCTCTGAAAGAGTTTCGTGACAGCGGGAAGCCGGTTTATGCCGTTGGCGAGAACTACAGCCAGG                                                             <  SRR4302543.6789264/94‑1 (MQ=60)

                                  GACCAACCGTCTATGCAGTACATCGGCAAAGCTCTGAAAGAGTTTCGTGACAGCGGGAAGCCGGTTTATGCCGTTGGCGAGAACTACAGCCAGG                                                             <  SRR4302543.3280079/94‑1 (MQ=60)

                                   ACCAACCGTCTATGCAGTACATCGGCAAAGCTCTGAAAGAGTTTCGTGACAGCGGGAAGCCGGTTTATGCCGTTGGCGAGAACTACAGCCAGGG                                                            <  SRR4302543.5983460/94‑1 (MQ=60)

                                    CCAACCGTCTATGCAGTACATCGGCAAAGCTCTGAAAGAGTTTCGTGACAGCGGGAAGCCGGTTTATGCCGTTGGCGAGAACTACAGCCAGGGG                                                           >  SRR4302543.2362505/1‑94 (MQ=60)

                                    CCAACCGTCTATGCAGTACATCGGCAAAGCTCTGAAAGAGTTTCGTGACAGCGGGAAGCCGGTTTATGCCGTTGGCGAGAACTACAGCCAGGGG                                                           >  SRR4302543.1998710/1‑94 (MQ=60)

                                     CAACCGTCTATGCAGTACATTGGCAAAGCTCTGAAAGAGTTTCGTGACAGCGGGAAGCCGGTTTATGCCGTTGGCGAGAACTACAGCCAGGGGC                                                          >  SRR4302543.7734838/1‑94 (MQ=60)

                                      AACCGTCTATGCAGTACATCGGCAAAGCTCTGAAAGAGTTTCGTGACAGCGGGAAGCCGGTTTATGCCGTTGGCGAGAACTACAGCCAGGGGCA                                                         >  SRR4302543.165654/1‑94 (MQ=60)

                                      AACCGTCTATGCAGTACATCGGCAAAGCTCTGAAAGAGTTTCGTGACAGCGGGAAGCCGGTTTATGCCGTTGGCGAGAACTACAGCCAGGGGCA                                                         >  SRR4302543.3264073/1‑94 (MQ=60)

                                      AACCGTCTATGCAGTACATCGGCAAAGCTCTGAAAGAGTTTCGTGACAGCGGGAAGCCGGTTTATGCCGTTGGCGAGAACTACAGCCAGGGGCA                                                         >  SRR4302543.3264069/1‑94 (MQ=60)

                                      AACCGTCTATGCAGTACATCGGCAAAGCTCTGAAAGAGTTTCGTGACAGCGGGAAGCCGGTTTATGCCGTTGGCGAGAACTACAGCCAGGGGCA                                                         <  SRR4302543.1450443/94‑1 (MQ=60)

                                      AACCGTCTATGCAGTACATCGGCAAAGCTCTGAAAGAGTTTCGTGACAGCGGGAAGCCGGTTTATGCCGTTGGCGAGAACTACAGCCAGGGGCA                                                         >  SRR4302543.6637272/1‑94 (MQ=60)

                                       ACCGTCTATGCAGTACATCGGCAAAGCTCTGAAAGAGTTTCGTGACAGCGGGAAGCCGGTTTATGCCGTTGGCGAGAACTACAGCCAGGGGCAA                                                        >  SRR4302543.3810153/1‑94 (MQ=60)

                                         CGTCTATGCAGTACATCGGCAAAGCTCTGAAAGAGTTTCGTGACAGCGGGAAGCCGGTTTATGCCGTTGGCGAGAACTACAGCCAGGGGCAATA                                                      >  SRR4302543.7545707/1‑94 (MQ=60)

                                         CGTCTATGCAGTACATCGGCAAAGCTCTGAAAGAGTTTCGTGACAGCGGGAAGCCGGTTTATGCCGTGGGCGAGAACTACAacacgggtcaata                                                      >  SRR4302543.6199382/1‑81 (MQ=60)

                                          GTCTATGCAGTACATCGGCAAAGCTCTGAAAGAGTTTCGTGACAGCGGGAAGCCGGTTTATGCCGTTGGCGAGAACTACAGCCAGGGGCAATAT                                                     >  SRR4302543.2803633/1‑94 (MQ=60)

                                          GTCTATGCAGTACATCGGCAAAGCTCTGAAAGAGTTTCGTGACAGCGGGAAGCCGGTTTATGCCGTTGGCGAGAACTACAGCCAGGGGCAATAT                                                     >  SRR4302543.4280935/1‑94 (MQ=60)

                                          GTCTATGCAGTACATCGGCAAAGCTCTGAAAGAGTTTCGTGACAGCGGGAAGCCGGTTTATGCCGTTGGCGAGAACTACAGCCAGGGGCAATAT                                                     >  SRR4302543.5252211/1‑94 (MQ=60)

                                          GTCTATGCAGTACATCGGCAAAGCTCTGAAAGAGTTTCGTGACAGCGGGAAGCCGGTTTATGCCGTTGGCGAGAACTACAGCCAGGGGCAATAT                                                     >  SRR4302543.6239108/1‑94 (MQ=60)

                                          GTCTATGCAGTACATCGGCAAAGCTCTGAAAGAGTTTCGTGACAGCGGGAAGCCGGTTTATGCCGTTGGCGAGAACTACAGCCAGGGGCAATAT                                                     <  SRR4302543.3828522/94‑1 (MQ=60)

                                          GTCTATGCAGTACATCGGCAAAGCTCTGAAAGAGTTTCGTGACAGCGGGAAGCCGGTTTATGCCGTTGGCGAGAACTACAGCCAGGGGCAATAT                                                     >  SRR4302543.344824/1‑94 (MQ=60)

                                          GTCTATGCAGTACATCGGCAAAGCTCTGAAAGAGTTTCGTGACAGCGGGAAGCCGGTTTATGCCGTTGGCGAGAACTACAGCCAGGGGCAATAT                                                     >  SRR4302543.5930841/1‑94 (MQ=60)

                                            CTATGCAGTACATCGGCAAAGCTCTGAAAGAGTTTCGTGACAGCGGGAAGCCGGTTTATGCCGTTGGCGAGAACTACAGCCAGGGGCAATATTA                                                   >  SRR4302543.7751755/1‑94 (MQ=60)

                                            CTATGCAGTACATCGGCAAAGCTCTGAAAGAGTTTCGTGACAGCGGGAAGCCGGTTTATGCCGTTGGCGAGAACTACAGCCAGGGGCAATATTA                                                   <  SRR4302543.4321087/94‑1 (MQ=60)

                                             TATGCAGTACATCGGCAAAGCTCTGAAAGAGTTTCGTGACAGCGGGAAGCCGGTTTATGCCGTTGGCGAGAACTACAGCCAGGGGCAATATTAT                                                  <  SRR4302543.6176757/94‑1 (MQ=60)

                                              ATGCAGTACATCGGCAAAGCTATGAAAGAGTTTCGTGACAGCGGGAAGCCGGTTTATGCCGTTGGCGAGAACTACAGCCAGGGGCAATATTATC                                                 <  SRR4302543.4016263/94‑1 (MQ=60)

                                                GCAGTACATCGGCAAAGCTCTGAAAGAGTTTCGTGACAGCGGGAAGCCGGTTTATGCCGTTGGCGAGAACTACAGCCAGGGGCAATATTATCTC                                               <  SRR4302543.6306674/94‑1 (MQ=60)

                                                GCAGTACATCGGCAAAGCTCTGAAAGAGTTTCGTGACAGCGGGAAGCCGGTTTATGCCGTTGGCGAGAACTACAGCCAGGGGCAATATTATCTC                                               <  SRR4302543.5898872/94‑1 (MQ=60)

                                                 CAGTAGATCGGCAAAGCGCTGAATGAGTTTCGGGACAGCGGGAAGCCGGTTTATGCCGTGGGCGAGAACTACTGCCAGGGGCAATATTATCTCG                                              <  SRR4302543.3766414/94‑1 (MQ=60)

                                                 CAGTACATCGGCAAAGCTCTGAAAGAGTTTCGTGACAGCGGGAAGCCGGTTTATGCCGTTGGCGAGAACTACAGCCAGGGGCAATATTATCTCG                                              <  SRR4302543.4035919/94‑1 (MQ=60)

                                                 CAGTACATCGGCAAAGCTCTGAAAGAGTTTCGTGACAGCGGGAAGCCGGTTTATGCCGTTGGCGAGAACTACAGCCAGGGGCAATATTATCTCG                                              <  SRR4302543.7582343/94‑1 (MQ=60)

                                                  AGTACATCGGCAAAGCTCTGAAAGAGTTTCGTGACAGCGGGAAGCCGGTTTATGCCGTTGGCGAGAACTACAGCCAGGGGCAATATTATCTCGC                                             >  SRR4302543.3559238/1‑94 (MQ=60)

                                                  AGTACATCGGCAAAGCTCTGAAAGAGTTTCGTGACAGCGGGAAGCCGGTTTATGCCGTTGGCGAGAACTACAGCCAGGGGCAATATTATCTCGC                                             >  SRR4302543.1760462/1‑94 (MQ=60)

                                                  AGTACATCGGCAAAGCTCTGAAAGAGTTTCGTGACAGCGGGAAGCCGGTTTATGCCGTTGGCGAGAACTACAGCCAGGGGCAATATTATCTCGC                                             >  SRR4302543.2548027/1‑94 (MQ=60)

                                                  AGTACATCGGCAAAGCTCTGAAAGAGTTTCGTGACAGCGGGAAGCCGGTTTATGCCGTTGGCGAGAACTACAGCCAGGGGCAATATTATCTCGC                                             >  SRR4302543.4360675/1‑94 (MQ=60)

                                                    TACATCGGCAAAGCTCTGAAAGAGTTTCGTGACAGCGGGAAGCCGGTTTATGCCGTTGGCGAGAACTACAGCCAGGGGCAATATTATCTCGCCA                                           <  SRR4302543.3894851/94‑1 (MQ=60)

                                                    TACATCGGCAAAGCTCTGAAAGAGTTTCGTGACAGCGGGAAGCCGGTTTATGCCGTTGGCGAGAACTACAGCCAGGGGCAATATTATCTCGCCA                                           <  SRR4302543.5255888/94‑1 (MQ=60)

                                                       ATCGGCAAAGCTCTGAAAGAGTTTCGTGACAGCGGGAAGCCGGGTTATGCCGTTGGCGAGAACTACAGCCAGGGGCAATATTATCTCGCCAGTT                                        >  SRR4302543.5402270/1‑94 (MQ=60)

                                                             AAAGCTCTGAAAGAGTTTCGTGACAGCGGGAAGCCGGTTTATGCCGTTGGCGAGAACTACAGCCAGGGGCAATATTATCTCGCCAGTTTCGCCA                                  >  SRR4302543.4444116/1‑94 (MQ=60)

                                                             AAAGCTCTGAAAGAGTTTCGTGACAGCGGGAAGCCGGTTTATGCCGTTGGCGAGAACTACAGCCAGGGGCAATATTATCTCGCCAGTTTCGCCA                                  >  SRR4302543.6468756/1‑94 (MQ=60)

                                                               AGCTCTGAAAGAGTTTCGTGACAGCGGGAAGCCGGTTTATGCCGTTGGCGAGAACTACAGCCAGGGGCAATATTATCTCGCCAGTTTCGCCAAT                                >  SRR4302543.944287/1‑94 (MQ=60)

                                                                 CTCTGAAAGAGTTTCGTGACAGCGGGAAGCCGGTTTATGCCGTTGGCGAGAACTACAGCCAGGGGCAATATTATCTCGCCAGTTTCGCCAATAA                              >  SRR4302543.7777561/1‑94 (MQ=60)

                                                                 CTCTGAAAGAGTTTCGTGACAGCGGGAAGCCGGTTTATGCCGTTGGCGAGAACTACAGCCAGGGGCAATATTATCTCGCCAGTTTCGCCAATAA                              >  SRR4302543.7777562/1‑94 (MQ=60)

                                                                   CTGAAAGGGTTTCGTGACAGCGGGAAGCCGGTTTATGCCGTTGTCGAGAACTACAGCCAGGGGCAATATTATCTCGCCAGTTTCGCCAATAAAA                            >  SRR4302543.2409836/1‑94 (MQ=60)

                                                                   CTGAAAGAGTTTCGTGACAGCGGGAAGCCGGTTTATGCCGTTGGCGAGAACTACAGCCAGGGGCAATATTATCTCGCCAGTTTCGCCAATAAAA                            >  SRR4302543.2536155/1‑94 (MQ=60)

                                                                    TGAAAGAGTTTCGTGACAGCGGGAAGCCGGTTTATGCCGTTGGCGAGAACTACAGCCAGGGGCAATATTATCTCGCCCGTTTCGCCCATAAAAT                           >  SRR4302543.2074077/1‑94 (MQ=60)

                                                                      AAAGAGTTTCGTGACAGCGGGAAGCCGGTTTATGCCGTTGGCGAGAACTACAGCCAGGGGCAATATTATCTCGCCAGTTTCGCCAATAAAATTT                         <  SRR4302543.2140365/94‑1 (MQ=60)

                                                                      AAAGAGTTTCGTGACAGCGGGAAGCCGGTTTATGCCGTTGGCGAGAACTACAGCCAGGGGCAATATTATCTCGCCAGTTTCGCCAATAAAATTT                         >  SRR4302543.436373/1‑94 (MQ=60)

                                                                       AAGAGTTTCGTGACAGCGGGAAGCCGGTTTATGCCGTTGGCGAGAACTACAGCCAGGGGCAATATTATCTCGCCAGTTTCGCCAATAAAATTTG                        <  SRR4302543.5175601/94‑1 (MQ=60)

                                                                        AGAGTTTCGTGACAGCGGGAAGCCGGTTTATGCCGTTGGCGAGAACTACAGCCAGGGGCAATATTATCTCGCCAGTTTCGCCAATAAAATTTGG                       >  SRR4302543.4499631/1‑94 (MQ=60)

                                                                           GTTTCGTGACAGCGGGAAGCCGGTTTATGCCGTTGGCGAGAACTACAGCCAGGGGCAATATTATCTCGCCAGTTTCGCCAATAAAATTTGGCTG                    <  SRR4302543.584045/94‑1 (MQ=60)

                                                                           GTTTCGTGACAGCGGGAAGCCGGTTTATGCCGTTGGCGAGAACTACAGCCAGGGGCAATATTATCTCGCCAGTTTCGCCAATAAAATTTGGCTG                    <  SRR4302543.3928433/94‑1 (MQ=60)

                                                                            TTTCGTGACAGCGGGAAGCCGGTTTATGCCGTTGGCGAGAACTACAGCCAGGGGCAATATTATCTCGCCAGTTTCGCCAATAAAATTTGGCTGT                   >  SRR4302543.5885126/1‑94 (MQ=60)

                                                                              TCGTGACAGCGGGAAGCCGGTTTATGCCGTTGGCGAGAACTACAGCCAGGGGCAATATTATCTCGCCAGTTTCGCCAATAAAATTTGGCTGTCT                 <  SRR4302543.293269/94‑1 (MQ=60)

                                                                               CGTGACAGCGGGAAGCCGGTTTATGCCGTTGGCGAGAACTACAGCCAGGGGCAATATTATCTCGCCAGTTTCGCCAATAAAATTTGGCTGTCTC                >  SRR4302543.262419/1‑94 (MQ=60)

                                                                                GTGACAGCGGGAAGCCGGTTTATGCCGTTGGCGAGAACTACAGCCAGGGGCAATATTATCTCGCCAGTTTCGCCAATAAAATTTGGCTGTCTCC               <  SRR4302543.4703819/94‑1 (MQ=60)

                                                                                GTGACAGCGGGAAGCCGGTTTATGCCGTTGGCGAGAACTACAGCCAGGGGCAATATTATCTCGCCAGTTTCGCCAATAAAATTTGGCTGTCTCC               <  SRR4302543.1660901/94‑1 (MQ=60)

                                                                                     AGCGGGAAGCCGGTTTATGCCGTTGGCGAGAACTACAGCCAGGGGCAATATTATCTCGCCAGTTTCGCCAATAAAATTTGGCTGTCTCCGCAAG          >  SRR4302543.783718/1‑94 (MQ=60)

                                                                                     AGCGGGAAGCCGGTTTATGCCGTTGGCGAGAACTACAGCCAGGGGCAATATTATCTCGCCAGTTTCGCCAATAAAATTTGGCTGTCTCCGCAAG          <  SRR4302543.6522978/94‑1 (MQ=60)

                                                                                     AGCGGGAAGCCGGTTTATGCCGTTGGCGAGAACTACAGCCAGGGGCAATATTATCTCGCCAGTTTCGCCAATAAAATTTGGCTGTCTCCGCAAG          <  SRR4302543.659746/94‑1 (MQ=60)

                                                                                      GCGGGAAGCCGGTTTATGCCGTTGGCGAGAACTACAGCCAGGGGCAATATTATCTCGCCAGTTTCGCCAATAAAATTTGGCTGTCTCCGCAAGG         <  SRR4302543.3050914/94‑1 (MQ=60)

                                                                                      GCGGGAAGCCGGTTTATGCCGTTGGCGAGAACTACAGCCAGGGGCAATATTATCTCGCCAGTTTCGCCAATAAAATTTGGCTGTCTCCGCAAGG         <  SRR4302543.4402011/94‑1 (MQ=60)

                                                                                       CGGGAAGCCGGTTTATGCCGTTGGCGAGAACTACAGCCAGGGGCAATATTATCTCGCCAGTTTCGCCAATAAAATTTGGCTGTCTCCGCAAGGC        <  SRR4302543.7873316/94‑1 (MQ=60)

                                                                                       CGGGAAGCCGGTTTATGCCGTTGGCGAGAACTACAGCCAGGGGCAATATTATCTCGCCAGTTTCGCCAATAAAATTTGGCTGTCTCCGCAAGGC        >  SRR4302543.479932/1‑94 (MQ=60)

                                                                                        GGGAAGCCGGTTTATGCCGTTGGCGAGAACTACAGCCAGGGGCAATATTATCTCGCCAGTTTCGCCAATAAAATTTGGCTGTCTCCGCAAGGCG       >  SRR4302543.4224086/1‑94 (MQ=60)

                                                                                        GGGAAGCCGGTTTATGCCGTTGGCGAGAACTACAGCCAGGGGCAATATTATCTCGCCAGTTTCGCCAATAAAATTTGGCTGTCTCCGCAAGGCG       <  SRR4302543.6407641/94‑1 (MQ=60)

                                                                                           AAGCCGGTTTATGCCGTTGGCGAGAACTACAGCCAGGGGCAATATTATCTCGCCAGTTTCGCCAATAAAATTTGGCTGTCTCCGCAAGGCGTGG    >  SRR4302543.2992682/1‑94 (MQ=60)

                                                                                             GCCGGTTTATGCCGTTGGCGAGAACTACAGCCAGGGGCAATATTATCTCGCCAGTTTCGCCAATAAAATTTGGCTGTCTCCGCAAGGCGTGGTT  <  SRR4302543.1943584/94‑1 (MQ=60)

TATTGTGATGGATCTGAAAAACTTCGCAGGCGGCGACCAACCGTCTATGCAGTACATCGGCAAAGCTCTGAAAGAGTTTCGTGACAGCGGGAAACCGGTTTATGCCGTTGGCGAGAACTACAGCCAGGGGCAATATTATCTCGCCAGTTTCGCCAATAAAATTTGGCTGTCTCCGCAAGGCGTGGTT  >  NC_000913/1847205‑1847391

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 2 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`