Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I1 R1 1696 279.3 15874187 97.8% 15524954 93.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 1,919,873 G→A D24N (GAT→AAT)  b1836 → hypothetical protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009131,919,8730GA100.0% 730.6 / NA 204D24N (GAT→AAT) b1836hypothetical protein
Reads supporting (aligned to +/- strand):  ref base G (0/0);  new base A (106/98);  total (106/98)

Only 100 of 207 total aligned reads displayed.

AGCTAAATGGAGAGCACGAAGATGAAAACCAGTGTGCGCATAGGCGCTTTTGAAATCGACGACGGCGAATTACACGGTGAATCGCCAGGTGATCGAACGTTAACCATTCCTTGTAAATCTGACCCCGATTTATGTATGCAACTGGATGCCTGGGATGCTGAAACCAGTATCCCTGCCCTG  >  NC_000913/1919783‑1919962
                                                                                          |                                                                                         
aGCTAAATGGAGAGCACGAAGATGAAAACCAGTGTGCGCATAGGCGCTTTTGAAATCGACGACGGCGAATTACACGGTGAATCGCCAGGTAAt                                                                                         >  1:1707595/1‑93 (MQ=255)
 gCTAAATGGAGAGCACGAAGATGAAAACCAGTGTGCGCATAGGCGCTTTTGAAATCGACGACGGCGAATTACACGGTGAATCGCCAGGTAATc                                                                                        >  2:5479063/1‑93 (MQ=255)
 gCTAAATGGAGAGCACGAAGATGAAAACCAGTGTGCGCATAGGCGCTTTTGAAATCGACGACGGCGAATTACACGGTGAATCGCCAGGTAATc                                                                                        <  2:54463/93‑1 (MQ=255)
 gCTAAATGGAGAGCACGAAGATGAAAACCAGTGTGCGCATAGGCGCTTTTGAAATCGACGACGGCGAATTACACGGTGAATCGCCAGGTAATc                                                                                        >  2:2455264/1‑93 (MQ=255)
  cTAAATGGAGAGCACGAAGATGAAAACCAGTGTGCGCATAGGCGCTTTTGAAATCGACGACGGCGAATTACACGGTGAATCGCCAGGTAATCg                                                                                       >  2:1131249/1‑93 (MQ=255)
   tAAATGGAGAGCACGAAGATGAAAACCAGTGTGCGCATAGGCGCTTTTGAAATCGACGACGGCGAATTACACGGTGAATCGCCAGGTAATCGa                                                                                      >  2:5117451/1‑93 (MQ=255)
    aaaTGGAGAGCACGAAGATGAAAACCAGTGTGCGCATAGGCGCTTTTGAAATCGACGACGGCGAATTACACGGTGAATCGCCAGGTAATCGaa                                                                                     <  2:76915/93‑1 (MQ=255)
    aaaTGGAGAGCACGAAGATGAAAACCAGTGTGCGCATAGGCGCTTTTGAAATCGACGACGGCGAATTACACGGTGAATCGCCAGGTAATCGaa                                                                                     <  2:6778169/93‑1 (MQ=255)
     aaTGGAGAGCACGAAGATGAAAACCAGGGTGCGCATAGGCGCTTTTGAAATCGACGACGGCGAATTACACGGTGAATCGCCAGGTAATCGAAc                                                                                    >  2:1761689/1‑93 (MQ=255)
      aTGGAGAGCACGAAGATGAAAACCAGTGTGCGCATAGGCGCTTTTGAAATCGACGACGGCGAATTACACGGTGAATCGCCAGGTAATCGAACg                                                                                   <  2:638424/93‑1 (MQ=255)
          agagCACGAAGATGAAAACCAGTGTGCGCATAGGCGCTTTTGAAATCGACGACGGCGAATTACACGGTGAATCGCCAGGTAATCGAACGTTaa                                                                               <  1:6267152/93‑1 (MQ=255)
           gagCACGAAGATGAAAACCAGTGTGCGCATAGGCGCTTTTGAAATCGACGACGGCGAATTACACGGTGAATCGCCAGGTAATCGAACGTTAAc                                                                              >  2:4651799/1‑93 (MQ=255)
           gagCACGAAGATGAAAACCAGTGTGCGCATAGGCGCTTTTGAAATCGACGACGGCGAATTACACGGTGAATCGCCAGGTAATCGAACGTTAAc                                                                              <  1:4941595/93‑1 (MQ=255)
           gagCACGAAGATGAAAACCAGTGTGCGCATAGGCGCTTTTGAAATCGACGACGGCGAATTACACGGTGAATCGCCAGGAAATCGAACGTTAAc                                                                              >  2:6647282/1‑93 (MQ=255)
            agCACGAAGATGAAAACCAGTGTGCGCATAGGCGCTTTTGAAATCGACGACGGCGAATTACACGGTGAATCGCCAGGTAATCGAACGTTAAcc                                                                             >  2:7454271/1‑93 (MQ=255)
            agCACGAAGATGAAAACCAGTGTGCGCATAGGCGCTTTTGAAATCGACGACGGCGAATTACACGGTGAATCGCCAGGTAATCGAACGTTAAcc                                                                             >  1:3073135/1‑93 (MQ=255)
               aCGAAGATGAAAACCAGTGTGCGCATAGGCGCTTTTGAAATCGACGACGGCGAGTTACACGGTGAATCGCCAGGTAATCGAACGTTAACCAtt                                                                          >  2:563508/1‑93 (MQ=255)
               aCGAAGATGAAAACCAGTGTGCGCATAGGCGCTTTTGAAATCGACGACGGCGAATTACACGGTGAATCGCCAGGTAATCGAACGTTAACCAtt                                                                          >  1:5729809/1‑93 (MQ=255)
                cGAAGATGAAAACCAGTGTGCGCATAGGCGCTTTTGAAATCGACGACGGCGAATTACACGGTGAATCGCCAGGTAATCGAACGTTAACCATTc                                                                         <  1:1471884/93‑1 (MQ=255)
                cGAAGATGAAAACCAGTGTGCGCATAGGCGCTTTTGAAACCGCCGACGGCGAATTACACGGTGAATCGCAAGGTAATCGAACGTTAACCATTc                                                                         <  1:1351660/93‑1 (MQ=255)
                 gAAGATGAAAACCAGTGTGCGCATAGGCGCTTTTGAAATCGACGACGGCGAATTACACGGTGAATCGCCAGGTAATCGAACGTTAACCATTcc                                                                        <  1:6336727/93‑1 (MQ=255)
                  aaGATGAAAACCAGTGTGCGCATAGGCGCTTTTGAAATCGACGACGGCGAATTACACGGTGAATCGCCAGGTAATCGAACGTTAACCATTCCt                                                                       <  2:3453202/93‑1 (MQ=255)
                   aGATGAAAACCAGTGTGCGCATAGGCGCTTTTGAAATCGACGACGGCGAATTACACGGTGAATCGCCAGGTAATCGAACGTTAACCATTCCtt                                                                      <  1:7127920/93‑1 (MQ=255)
                   aGATGAAAACCAGTGTGCGCATAGGCGCTTTTGAAATCGACGACGGCGAATTACACGGTGAATCGCCAGGTAATCGAACGTTAACCATTCCtt                                                                      <  2:7218336/93‑1 (MQ=255)
                    gATGAAAACCAGTGTGCGCATAGGCGCTTTTGAAATCGACGACGGCGAATTACACGGTGAATCGCCAGGTAATCGAACGTTAACCATTCCttt                                                                     >  2:4712462/1‑92 (MQ=255)
                    gATGAAAACCAGTGTGCGCATAGGCGCTTTTGAAATCGACGACGGCGAATTACACGGTGAATCGCCAGGTAATCGAACGTTAACCATTCCTTg                                                                     >  2:6595057/1‑93 (MQ=255)
                      tGAAAACCAGTGTGCGCATAGGCGCTTTTGAAATCGGCGACGGCGAATTACACGGTGAATCGCCAGGTAATCGAACGTTAACCATTCCTTGTa                                                                   <  2:4969724/93‑1 (MQ=255)
                      tGAAAACCAGTGTGCGCATAGGCGCTTTTGAAATCGACGACGGCGAATTACACGGTGAATCGCCAGGTAATCGAACGTTAACCATTCCTTGTa                                                                   >  2:136071/1‑93 (MQ=255)
                      tGAAAACCAGTGTGCGCATAGGCGCTTTTGAAATCGACGACGGCGAATTACACGGTGAATCGCCAGGCAATCGAACGTTAACCATTCCTTGTa                                                                   >  1:4740533/1‑93 (MQ=255)
                       gAAAACCAGTGTGCGCATAGGCGCTTTTGAAATCGACGACGGCGAATTACACGGTGAATCGCCAGGTAATCGAACGTTAACCATTCCTTGTaa                                                                  >  1:5255948/1‑93 (MQ=255)
                        aaaaCCAGTGTGCGCATAGGCGCTTTTGAAATCGACGACGGCGAATTACACGGTGAATCGCCAGGTAATCGAACGTTAACCATTCCTTGTaaa                                                                 >  1:6375367/1‑93 (MQ=255)
                        aaaaCCAGTGTGCGCATAGGCGCTTTTGAAATCGACGACGGCGAATTACACGGTGAATCGCCAGGTAATCGAACGTTAACCATTCCTTGTaaa                                                                 <  2:5948888/93‑1 (MQ=255)
                        aaaaCCAGTGTGCGCATAGGCGCTTTTGAAATCGACGACGGCGAATTACACGGTGAATCGCCAGGTAATCGAACGTTAACCATTCCTTGTaaa                                                                 <  1:2687644/93‑1 (MQ=255)
                          aaCCAGTGTGCGCATAGGCGCTTTTGAAATCGACGACGGCGAATTACACGGTGAATCGCCAGGTAATCGAACGTTAACCATTCCTTGTAAATc                                                               <  2:4082557/93‑1 (MQ=255)
                           aCCAGTGTGCGCATAGGCGCTTTTGAAATCGACGACGGCGAATTACACGGTGAATCGCCAGGTAATCGAACGTTAACCATTCCTTGTAAATCt                                                              <  1:1693836/93‑1 (MQ=255)
                              aGTGTGCGCATAGGCGCTTTTGAAATCGACGACGGCGAATTACACGGTGAATCGCCAGGTAATCGAACGTTAACCATTCCTTGTAAATCTGAc                                                           >  2:2081240/1‑93 (MQ=255)
                              aGTGTGCGCATAGGCGCTTTTGAAATCGACGACGGCGAATTACACGGTGAATCGCCAGGTAATCGAACGTTAACCATTCCTTGTAAATCTGAc                                                           <  2:577001/93‑1 (MQ=255)
                                tgtgCGCATAGGCGCTTTTGAAATCGACGACGGCGAATTACACGGTGAATCGCCCGGTAATCGAACGTTAACCATTCCTTGTAAATCTGAccc                                                         >  1:3403614/1‑93 (MQ=255)
                                tgtcCGCATAGGCGCTTTTGAAATAGACGACGGCGAATTACACGGTGAATCGCCAGGTAATCGAACGTTAACCATTCCTTGTAAATCTGAccc                                                         <  2:5223383/93‑1 (MQ=255)
                                  tgCGCATAGGCGCTTTTGAAATCGACGACGGCGAATTACACGGTGAATCGCCAGGTAATCGAACGTTAACCATTCCTTGTAAATCTGACCCCg                                                       >  1:3527105/1‑93 (MQ=255)
                                   gcgcATAGGCGCTTTTGAAATCGACGACGGCGAATTACACGGTGAATCGCCAGGTAATCGAACGTTAACCATTCCTTGTAAATCTGACCCCGa                                                      >  2:3237775/1‑93 (MQ=255)
                                      cATAGGCGCTTTTGAAATCGACGACGGCGAATTACACGGTGAATCGCCAGGTAATCGAACGTTAACCATTCCTTGTAAATCTGACCCCGAttt                                                   <  1:5017209/93‑1 (MQ=255)
                                       aTAGGCGCTTTTGAAATCGACGACGGCGAATTACACGGTGAATCGCCAGGTAATCGAACGTTAACCATTCCTTGTAAATCTGACCCCGATTta                                                  >  1:2618563/1‑93 (MQ=255)
                                       aTAGGCGCTTTTGAAATCGACGACGGCGAATTACACGGTGAATCGCCAGGTAATCGAACGTTAACCATTCCTTGTAAATCTGACCCCGATTta                                                  >  1:2043234/1‑93 (MQ=255)
                                        tAGGCGCTTTTGAAATCGACGACGGCGAATTACACGGTGAATCGCCAGGTAATCGAACGTTAACCATTCCTTGTAAATCTGACCCCGATTtat                                                 >  2:3935185/1‑93 (MQ=255)
                                        tAGGCGCTTTTGAAATCGACGACGGCGAATTACACGGTGAATCGCCAGGTAATCGAACGTTAACCATTCCTTGTAAATCTGACCCCGATTtat                                                 >  1:3809709/1‑93 (MQ=255)
                                        tAGGCGCTTTTGAAATCGACGACGGCGAATTACACGGTGAATCGCCAGGTAATCGAACGTTAACCATTCCTTGTAAATCTGACCCCGATTtat                                                 >  2:7401585/1‑93 (MQ=255)
                                         aGGCGCTTTTGAAATCGACGACGGCGAATTACACGGTGAATCGCCAGGTAATCGAACGTTAACCATTCCTTGTAAATCTGACCCCGATTtatg                                                <  2:7480436/93‑1 (MQ=255)
                                          ggCGCTTTTGAAATCGACGACGGCGAATTACACGGTGAATCGCCAGGTAATCGAACGTTAACCATTCCTTGTAAATCTGACCCCGATTtatgt                                               <  1:7255901/93‑1 (MQ=255)
                                           gcgcTTTTGAAATCGACGACGGCGAATTACACGGTGAATCGCCAGGTAATCGAACGTTAACCATTCCTTGTAAATCTGACCCCGATTtatgta                                              <  2:3747671/93‑1 (MQ=255)
                                           gcgcTTTTGAAATCGACGACGGCGAATTACACGGTGAATCGCCAGGTAATCGAACGTTAACCATTCCTTGTAAATCTGACCCCGATTtatgta                                              <  1:7658486/93‑1 (MQ=255)
                                           gcgcTTTTGAAATCGACGACGGCGAATTACACGGTGAATCGCCAGGTAATCGAACGTTAACCATTCCTTGTAAATCTGACCCCGATTtatgta                                              >  1:5302052/1‑93 (MQ=255)
                                               ttttGAAATCGACGACGGCGAATTACACGGTGAATCGCCAGGTAATCGAACGTTAACCATTCCTTGTAAATCTGACCCCGATTTATGTATGCa                                          >  2:1536100/1‑93 (MQ=255)
                                               ttttGAAATCGACGACGGCGAATTACACGGTGAATCGCCAGGTAATCGAACGTTAACCATTCCTTGTAAATCTGACCCCGATTTATGTATGCa                                          <  2:4440499/93‑1 (MQ=255)
                                               ttttGAAATCGACGACGGCGAATTACACGGTGAATCGCCAGGTAATCGAACGTTAACCATTCCTTGTAAATCTGACCCCGATTTATGTATGCa                                          >  2:2221565/1‑93 (MQ=255)
                                               ttttGAAATCGACGACGGCGAATTACACGGTGAATCGCCAGGTAATCGAACGTTAACCATTCCTTGTAAATCTGACCCCGATTTATGTATGCa                                          <  2:6070749/93‑1 (MQ=255)
                                               ttttGAAATCGACGACGGCGAATTACACGGTGAATCGCCAGGTAATCGAACGTTAACCATTCCTTGTAAATCTGACCCCGATTTATGTATGCa                                          >  1:3255147/1‑93 (MQ=255)
                                               ttttGAAATCGACGACGGCGAATTACACGGTGAATCGCCAGGTAATCGAACGTTAACCATTCCTTGTAAATCTGACCCCGATTTATGTATGCa                                          >  1:2255759/1‑93 (MQ=255)
                                                tttGAAATCGACGACGGCGAATTACACGGTGAATCGCCAGGTAATCGAACGTTAACCATTCCTTGTAAATCTGACCCCGATTTATGTATGCaa                                         >  1:993929/1‑93 (MQ=255)
                                                tttGAAATCGACGACGGCGAATTACACGGTGAATCGCCAGGTAATCGAACGTTAACCATTCCTTGTAAATCTGACCCCGATTTATGTATGCaa                                         <  1:6703333/93‑1 (MQ=255)
                                                tttGAAATCGACGACGGCGAATTACACGGGGAATCGCCAGGTAATCGAACGTTAACCATTCCTTGTAAATCTGACCCCGATTTATGTATGCaa                                         >  1:4425929/1‑93 (MQ=255)
                                                 ttGAAATCGACGACGGCGAATTACACGGTGAATCGCCAGGTAATCGAACGTTAACCATTCCTTGTAAATCTGACCCCGATTTATGTATGCAAc                                        <  2:5031482/93‑1 (MQ=255)
                                                  tGAAATCGACGACGGCGAATTACACGGTGAATCGCCAGGTAATCGAACGTTAACCATTCCTTGTAAATCTGACCCCGATTTATGTATGCAACt                                       <  1:778684/93‑1 (MQ=255)
                                                   gAAATCGACGACGGCGAATTACACGGTGAATCGCCAGGTAATCGAACGTTAACCATTCCTTGTAAATCTGACCCCGATTTATGTATGCAACTg                                      <  1:2395627/93‑1 (MQ=255)
                                                     aaTCGACGACGGCGAATTACACGGTGAATCGCCAGGTAATCGAACGTTAACCATTCCTTGTAAATCTGACCCCGATTTATGTATGCAACTGGa                                    <  2:7767973/93‑1 (MQ=255)
                                                     aaTCGACGACGGCGAATTACACGGTGAATCGCCAGGTAATCGAACGTTAACCATTCCTTGTAAATCTGACCCCGATTTATGTATGCAACTGGa                                    <  2:4358551/93‑1 (MQ=255)
                                                     aaTCGACGACGGCGAATTACACGGTGAATCGCCAGGTAATCGAACGTTAACCATTCCTTGTAAATCTGACCCCGATTTATGTATGCAACTGGa                                    >  2:2918/1‑93 (MQ=255)
                                                      aTCGACGACGGCGAATTACACGGTGAATCGCCAGGTAATCGAACGTTAACCATTCCTTGTAAATCTGACCCCGATTTATGTATGCAACTGGAt                                   >  2:7590627/1‑93 (MQ=255)
                                                      aTCGACGACGGCGAATTACACGGTGAATCGCCAGGTAATCGAACGTTAACCATTCCTTGTAAATCTGACCCCGATTTATGTATGCAACTGGAt                                   <  1:3008473/93‑1 (MQ=255)
                                                      aTCGACGACGGCGAATTACACGGTGAATCGCCAGGTAATCGAACGTTAACCATTCCTTGTAAATCTGACCCCGATTTATGTATGCAACTGGAt                                   <  2:7179200/93‑1 (MQ=255)
                                                           cgacgGCGAATTACACGGTGAATCGGCAGGTAATCGAACGTTAACCATTCCTTGTAAATCTGACCCCGATTTATGTATGCAACTGGATGCCTg                              <  1:6463388/93‑1 (MQ=255)
                                                            gacgGCGAATTACACGGTGAATCGCCAGGTAATCGAACGTTAACCATTCCTTGTAAATCTGACCCCGATTTATGTATGCAACTGGATGCCTgg                             <  1:3594492/93‑1 (MQ=255)
                                                             acgGCGAATTACACGGTGAATCGCCAGGTAATCGAACGTTAACCATTCCTTGTAAATCTGACCCCGATTTATGTATGCAACTGGATGCCTggg                            <  1:7558053/93‑1 (MQ=255)
                                                             acgGCGAATTACACGGTGAATCGCCAGGTAATCGAACGTTAACCATTCCTTGTAAATCTGACCCCGATTTATGTATGCAACTGGATGCCTggg                            >  1:7455216/1‑93 (MQ=255)
                                                              cgGCGAATTACACGGTGAATCGCCAGGTAATCGAACGTTAACCATTCCTTGTAAATCTGACCCCGATTTATGTATGCAACTGGATGCCTGGGa                           <  2:6739709/93‑1 (MQ=255)
                                                               ggCGAATTACACGGTGAATCGCCAGGTAATCGAACGTTAACCATTCCTTGTAAATCTGACCCCGATTTATGTATGCAACTGGATGCCTGGGAt                          >  2:3082043/1‑93 (MQ=255)
                                                               ggCGAATTACACGGTGAATCGCCAGGTAATCGAACGTTAACCATTCCTTGTAAATCTGACCCCGATTTATGTATGCAACTGGATGCCTGGGAt                          <  2:3363161/93‑1 (MQ=255)
                                                                gCGAATTACACGGTGAATCGCCAGGTAATCGAACGTTAACCATTCCTTGTAAATCTGCCCCCGATTTATGTATGCAACTGGATGCCTGGGATg                         >  1:6729066/1‑93 (MQ=255)
                                                                gCGAATTACACGGTGAATCGCCAGGTAATCGAACGTTAACCATTCCTTGTAAATCTGACCCCGATTTATGTATGCAACTGGATGCCTGGGATg                         >  1:101572/1‑93 (MQ=255)
                                                                 cGAATTACACGGTGAATCGCCAGGTAATCGAACGTTAACCATTCCTTGTAAATCTGACCCCGATTTATGTATGCAACTGGATGCCTGGGATGc                        <  1:7841681/93‑1 (MQ=255)
                                                                  gAATTACACGGTGAATCGCCAGGTAATCGAACGTTAACCATTCCTTGTAAATCTGACCCCGATTTATGTATGCAACTGGATGCCTGGGATGCt                       <  1:4667437/93‑1 (MQ=255)
                                                                   aaTTACACGGTGAATCGCCAGGTAATCGAACGTTAACCATTCCTTGTAAATCTGACCCCGATTTATGTATGCAACTGGATGCCTGGGATGCTg                      >  1:1774394/1‑93 (MQ=255)
                                                                     ttACACGGTGAATCGCCAGGTAATCGAACGTTAACCATTCCTTGTAAATCTGACCCCGATTTATGTATGCAACTGGATGCCTGGGATGCTGaa                    >  1:1282917/1‑93 (MQ=255)
                                                                         acGGTGAATCGCCAGGTAATCGAACGTTAACCATTCCTTGTAAATCTGACCCCGATTTATGTATGCAACTGGATGCCTGGGATGCTGAAACCa                >  2:6423746/1‑93 (MQ=255)
                                                                           ggTGAATCGCCAGGTAATCGAACGTTAACCATTCCTTGTAAATCTGACCCCGATTTATGTATGCAACTGGATGCCTGGGATGCTGAAACCAGt              <  2:2634760/93‑1 (MQ=255)
                                                                             tGAATCGCCAGGTAATCGAACGTTAACCATTCCTTGTAAATCTGACCCCGATTTATGTATGCAACTGGATGCCTGGGATGCTGAAACCAGTAt            <  1:70323/93‑1 (MQ=255)
                                                                             tGAATCGCCAGGTAATCGAACGTTAACCATTCCTTGTAAATCTGACCCCGATTTATGTATGCAACTGGATGCCTGGGATGCTGAAACCAGTAt            >  1:3848015/1‑93 (MQ=255)
                                                                              gAATCGCCAGGTAATCGAACGTTAACCATTCCTTGTAAATCTGACCACGATTTATGTATGCAACTGGATGCCTGGGATGCTGAAACCAGTATc           >  1:6597201/1‑93 (MQ=255)
                                                                               aaTCGCCAGGTAATCGAACGTTAACCATTCCTTGTAAATCTGACCCCGATTTATGTATGCAACTGGATGCCTGGGATGCTGAAACCAGTATcc          >  1:7658333/1‑93 (MQ=255)
                                                                               aaTCGCCAGGTAATCGAACGTTAACCATTCCTTGTAAATCTGACCCCGATTTATGTATGCAACTGGATGCCTGGGATGCTGAAACCAGTATcc          >  1:3588838/1‑93 (MQ=255)
                                                                               aaTCGCCAGGTAATCGAACGTTAACCATTCCTTGTAAATCTGACCCCGATTTATGTATGCAACTGGATGCCTGGGATGCTGAAACCAGTATcc          >  1:4168081/1‑93 (MQ=255)
                                                                               aaTCGCCAGGTAATCGAACGTTAACCATTCCTTGTAAATCTGACCCCGATTTATGTATGCAACTGGATGCCTGGGATGCTGAAACCAGTATcc          >  2:5230916/1‑93 (MQ=255)
                                                                                aTCGCCAGGTAATCGAACGTTAACCATTCCTTGTAAATCTGACCCCGATTTATGTATGCAACTGGATGCCTGGGATGCTGAAACCAGTATccc         <  1:813827/93‑1 (MQ=255)
                                                                                aTCGCCAGGTAATCGAACGTTAACCATTCCTTGTAAATCTGACCCCGATTTATGTATGCAACTGGATGCCTGGGATGCTGAAACCAGTATccc         <  2:6531662/93‑1 (MQ=255)
                                                                                aTCGCCAGGTAATCGAACGTTAACCATTCCTTGTAAATCTGACCCCGATTTATGTATGCAACTGGATGCCTGGGATGCTGAAACCAGTATccc         <  2:4427408/93‑1 (MQ=255)
                                                                                 acGCCAGGTAATCGAACGTTAACCATTCCTTGTAAATCTGACCCCGATTTATGTATGCAACTGGATGCCTGGGATGCTGAAACCAGTATccct        <  2:1805673/92‑1 (MQ=255)
                                                                                    ccAGGTAATCGAACGTTAACCATTCCTTGTAAATCTGACCCCGATTTATGTATGCAACTGGATGCCTGGGATGCTGAAACCAGTATccctgcc     <  2:5603670/93‑1 (MQ=255)
                                                                                    ccAGGTAATCGAACGTTAACCATTCCTTGTAAATCTGACCCCGATTTATGTATGCAACTGGATGCCTGGGATGCTGAAACCAGTATccctgcc     >  1:1930494/1‑93 (MQ=255)
                                                                                     cAGGTAATCGAACGTTAACCATTCCTTGTAAATCTGACCCCGATTTATGTATGCAACTGGATGCCTGGGATGCTGAAACCAGTATccctgccc    <  1:550324/93‑1 (MQ=255)
                                                                                       ggTAATCGAACGTTAACCATTCCTTGTAAATCTGACCCCGATTTATGTATGCAACTGGATGCCTGGGATGCTGAAACCAGTATccctgccctg  >  2:6830409/1‑93 (MQ=255)
                                                                                          |                                                                                         
AGCTAAATGGAGAGCACGAAGATGAAAACCAGTGTGCGCATAGGCGCTTTTGAAATCGACGACGGCGAATTACACGGTGAATCGCCAGGTGATCGAACGTTAACCATTCCTTGTAAATCTGACCCCGATTTATGTATGCAACTGGATGCCTGGGATGCTGAAACCAGTATCCCTGCCCTG  >  NC_000913/1919783‑1919962

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

BRESEQ :: bam2aln output
CAGCTAAATGGAGAGCACGAAGATGAAAACCAGTGTGCGCATAGGCGCTTTTGAAATCGACGACGGCGAATTACACGGTGAATCGCCAGGTGATCGAACGTTAACCATTCCTTGTAAATCTGACCCCGATTTATGTATGCAACTGGATGCCTGGGATGCTGAAACCAGTATCCCTGCCCTGCTAA  >  NC_000913/1919782‑1919966
                                                                                           |                                                                                             
CAGCTAAATGGAGAGCACGAAGATGAAAACCAGTGTGCGCATAGGCGCTTTTGAAATCGACGACGGCGAATTACACGGTGAATCGCCAGGTAAT                                                                                             >  SRR4302543.1722880/1‑94 (MQ=60)
 AGCTAAATGGAGAGCACGAAGATGAAAACCAGTGTGCGCATAGGCGCTTTTGAAATCGACGACGGCGAATTACACGGTGAATCGCCAGGTAATC                                                                                            <  SRR4302543.6560394/94‑1 (MQ=60)
  GCTAAATGGAGAGCACGAAGATGAAAACCAGTGTGCGCATAGGCGCTTTTGAAATCGACGACGGCGAATTACACGGTGAATCGCCAGGTAATCG                                                                                           >  SRR4302543.754283/1‑94 (MQ=60)
  GCTAAATGGAGAGCACGAAGATGAAAACCAGTGTGCGAATAGGCACTTTTGAAATCGACGACGGCGAATTACACGGTGAATCGCCAGGTAATCG                                                                                           <  SRR4302543.4244369/94‑1 (MQ=60)
     AAATGGAGAGCACGAAGATGAAAACCAGTGTGCGCATAGGCGCTTTTGAAATCGACGACGGCGAATTACACGGTGAATCGCCAGGTAATCGAAC                                                                                        <  SRR4302543.1764426/94‑1 (MQ=60)
        TGGAGAGCACGAAGATGAAAACCAGTGTGCGCATAGGCGCTTTTGAAATCGACGACGGCGAATTACACGGTGAATCGCCAGGTAATCGAACGTT                                                                                     >  SRR4302543.6729326/1‑94 (MQ=60)
           AGAGCACGAAGATGAAAACCAGTGTGCGCATAGGCGCTTTTGAAATCGACGACGGCGAATTACACGGTGAATCGCCAGGTAATCGAACGTTAAC                                                                                  >  SRR4302543.6893594/1‑94 (MQ=60)
           AGAGCACGAAGATGAAAACCAGTGTGCGCATAGGCGCTTTTGAAATCGACGACGGCGAATTACACGGTGAATCGCCAGGTAATCGAACGTTAAC                                                                                  <  SRR4302543.6326246/94‑1 (MQ=60)
            GAGCACGAAGATGAAAACCAGTGTGCGCATAGGCGCTTTTGAAATCGACGACGGCGAATTACACGGTGAATCGCCAGGTAATCGAACGTTAACC                                                                                 <  SRR4302543.3725622/94‑1 (MQ=60)
            GAGCACGAAGATGAAAACCAGTGTGCGCATAGGCGCTTTTGAAATCGACGACGGCGAATTACACGGTGAATCGCCAGGTAATCGAACGTTAACC                                                                                 <  SRR4302543.4986591/94‑1 (MQ=60)
            GAGCACGAAGATGAAAACCAGTGTGCGCATAGGCGCTTTTGAAATCGACGACGGCGAATTACACGGTGAATCGCCAGGTAATCGAACGTTAACC                                                                                 >  SRR4302543.3100771/1‑94 (MQ=60)
              GCACGAAGATGAAAACCAGTGTGCGCATAGGCGCTTTTGAAATCGACGACGGCGAATTACACGGTGAATCGCCAGGTAATCGAACGTTAACCAT                                                                               >  SRR4302543.1418227/1‑94 (MQ=60)
              GCACGAAGATGAAAACCAGTGTGCGCATAGGCGCTTTTGAAATCGACGACGGCGAATTACACGGTGAATCGCCAGGTAATCGAACGTTAACCAT                                                                               <  SRR4302543.5059262/94‑1 (MQ=60)
               CACGAAGATGAAAACCAGTGTGCGCATAGGCGCTTTTGAAATCGACGACGGCGAATTACACGGTGAATCGCCAGGTAATCGAACGTTAACCATT                                                                              >  SRR4302543.5782092/1‑94 (MQ=60)
                 CGAAGATGAAAACCAGTGTGCGCATAGGCGCTTTTGAAATCGACGACGGCGAATTACACGGTGAATCGCCAGGTAATCGAACGTTAACCATTCC                                                                            <  SRR4302543.1485142/94‑1 (MQ=60)
                 CGAAGATGAAAACCAGTGTGCGCATAGGCGCTTTTGAAACCGCCGACGGCGAATTACACGGTGAATCGCAAGGTAATCGAACGTTAACCATTCC                                                                            <  SRR4302543.1363753/94‑1 (MQ=60)
                  GAAGATGAAAACCAGTGTGCGCATAGGCGCTTTTGAAATCGACGACGGCGAATTACACGGTGAATCGCCAGGTAATCGAACGTTAACCATTCCT                                                                           <  SRR4302543.6396318/94‑1 (MQ=60)
                  GAAGATGAAAACCAGTGTGCGCATAGGCGCTTTTGAAATCGACGACGGCGAATTACACGGTGAATCGCCAGGTAATCGAACGTTAACCATTCCT                                                                           <  SRR4302543.3386228/94‑1 (MQ=60)
                  GAAGATGAAAACCAGTGTGCGCATAGGCGCTTTTGAAATCGACGACGGCGAATTACACGGTGAATCGCCAGGTAATCGAACGTTAACCATTCCT                                                                           >  SRR4302543.7113360/1‑94 (MQ=60)
                  GAAGATGAAAACCAGTGTGCGCATAGGCGCTTTTGAAATCGACGACGGCGAATTACACGGTGAATCGCCAGGTAATCGAACGTTAACCATTCCT                                                                           <  SRR4302543.4737149/94‑1 (MQ=60)
                    AGATGAAAACCAGTGTGCGCATAGGCGCTTTTGAAATCGACGACGGCGAATTACACGGTGAATCGCCAGGTAATCGAACGTTAACCATTCCTTG                                                                         <  SRR4302543.7197179/94‑1 (MQ=60)
                     GATGAAAACCAGTGTGCGCATAGGCGCTTTTGAAATCGACGACGGCGAATTACACGGTGAATCGCCAGGTAATCGAACGTTAACCATTCCTTGT                                                                        <  SRR4302543.1719751/94‑1 (MQ=60)
                      ATGAAAACCAGTGTGCGCATAGGCGCTTTTGAAATCGACGACGGCGAATTACACGGTGAATCGCCAGGTAATCGAACGTTAACCATTCCTTGTA                                                                       >  SRR4302543.5552057/1‑94 (MQ=60)
                      ATGAAAACCAGTGTGCGCATAGGCGCTTTTGAAATCGACGACGGCGAATTACACGGTGAATCGCCAGGCAATCGAACGTTAACCATTCCTTGTA                                                                       >  SRR4302543.4783847/1‑94 (MQ=60)
                       TGAAAACCAGTGTGCGCATAGGCGCTTTTGAAATCGACGACGGCGAATTACACGGTGAATCGCCAGGTAATCGAACGTTAACCATTCCTTGTAA                                                                      >  SRR4302543.5303353/1‑94 (MQ=60)
                        GAAAACCAGTGTGCGCATAGGCGCTTTTGAAATCGACGACGGCGAATTACACGGTGAATCGCCAGGTAATCGAACGTTAACCATTCCTTGTAAA                                                                     <  SRR4302543.7480700/94‑1 (MQ=60)
                        GAAAACCAGTGTGCGCATAGGCGCTTTTGAAATCGACGACGGCGAATTACACGGTGAATCGCCAGGTAATCGAACGTTAACCATTCCTTGTAAA                                                                     >  SRR4302543.6435341/1‑94 (MQ=60)
                         AAAACCAGTGTGCGCATAGGCGCTTTTGAAATCGACGACGGCGAATTACACGGTGAATCGCCAGGTAATCGAACGTTAACCATTCCTTGTAAAT                                                                    <  SRR4302543.5325641/94‑1 (MQ=60)
                         AAAACCAGTGTGCGCATAGGCGCTTTTGAAATCGACGACGGCGAATTACACGGTGAATCGCCAGGTAATCGAACGTTAACCATTCCTTGTAAAT                                                                    <  SRR4302543.2712013/94‑1 (MQ=60)
                          AAACCAGTGTGCGCATAGGCGCTTTTGAAATCGACGACGGCGAATTACACGGTGAATCGCCAGGTAATCGAACGTTAACCATTCCTTGTAAATC                                                                   <  SRR4302543.3179076/94‑1 (MQ=60)
                            ACCAGTGTGCGCATAGGCGCTTTTGAAATCGACGACGGCGAATTACACGGTGAATCGCCAGGTAATCGAACGTTAACCATTCCTTGTAAATCTG                                                                 <  SRR4302543.1709030/94‑1 (MQ=60)
                             CCAGTGTGCGCATAGGCGCTTTTGAAATCGACGACGGCGAATTACACGGTGAATCGCCAGGTAATCGAACGTTAACCATTCCTTGTAAATCTGA                                                                <  SRR4302543.948540/94‑1 (MQ=60)
                              CAGTGTGCGCATAGGCGCTTTTGAAATCGACGACGGCGAATTACACGGTGAATCGCCAGGTAATCGAACGTTAACCATTCCTTGTAAATCTGAC                                                               >  SRR4302543.2075126/1‑94 (MQ=60)
                               AGTGTGCGCATAGGCGCTTTTGAAATCGACGACGGCGAATTACACGGTGAATCGCCAGGTAATCGAACGTTAACCATTCCTTGTAAATCTGACC                                                              >  SRR4302543.3561598/1‑94 (MQ=60)
                                GTGTGCGCATAGGCGCTTTTGAAATCGACGACGGCGAATTACACGGTGAATCGCCCGGTAATCGAACGTTAACCATTCCTTGTAAATCTGACCC                                                             >  SRR4302543.3434098/1‑94 (MQ=60)
                                GTGTGCGCATAGGCGCTTTTGAAATCGACGACGGCGAATTACACGGTGAATCGCCAGGTAATCGAACGTTAACCATTCCTTGTAAATCTGACCC                                                             >  SRR4302543.1825994/1‑94 (MQ=60)
                                  GTGCGCATAGGCGCTTTTGAAATCGACGACGGCGAATTACACGGTGAATCGCCAGGTAATCGAACGTTAACCATTCCTTGTAAATCTGACCCCG                                                           <  SRR4302543.4077047/94‑1 (MQ=60)
                                  GTGCGCATAGGCGCTTTTGAAATCGACGACGGCGAATTACACGGTGAATCGCCAGGTAATCGAACGTTAACCATTCCTTGTAAATCTGACCCCG                                                           >  SRR4302543.3558543/1‑94 (MQ=60)
                                     CGCATAGGCGCTTTTGAAATCGACGACGGCGAATTACACGGTGAATCGCCAGGTAATCGAACGTTAACCATTCCTTGTAAATCTGACCCCGATT                                                        >  SRR4302543.812318/1‑94 (MQ=60)
                                       CATAGGCGCTTTTGAAATCGACGACGGCGAATTACACGGTGAATCGCCAGGTAATCGAACGTTAACCATTCCTTGTAAATCTGACCCCGATTTA                                                      >  SRR4302543.343997/1‑94 (MQ=60)
                                       CATAGGCGCTTTTGAAATCGACGACGGCGAATTACACGGTGAATCGCCAGGTAATCGAACGTTAACCATTCCTTGTAAATCTGACCCCGATTTA                                                      <  SRR4302543.5062857/94‑1 (MQ=60)
                                       CATAGGCGCTTTTGAAATCGACGACGGCGAATTACACGGTGAATCGCCAGGTAATCGAACGTTAACCATTCCTTGTAAATCTGACCCCGATTTA                                                      >  SRR4302543.2642300/1‑94 (MQ=60)
                                       CATAGGCGCTTTTGAAATCGACGACGGCGAATTACACGGTGAATCGCCAGGTAATCGAACGTTAACCATTCCTTGTAAATCTGACCCCGATTTA                                                      >  SRR4302543.2061557/1‑94 (MQ=60)
                                       CATAGGCGCTTTTGAAATCGACGACGGCGAATTACACGGTGAATCGCCAGGTAATCGAACGTTAACCATTCCTTATAAATCTGACCCCGATTTA                                                      <  SRR4302543.3058984/94‑1 (MQ=60)
                                        ATAGGCGCTTTTGAAATCGACGACGGCGAATTACACGGTGAATCGCCAGGTAATCGAACGTTAACCATTCCTTGTAAATCTGACCCCGATTTAT                                                     >  SRR4302543.3843292/1‑94 (MQ=60)
                                        ATAGGCGCTTTTGAAATCGACGACGGCGAATTACACGGTGAATCGCCAGGTAATCGAACGTTAACCATTCCTTGTAAATCTGACCCCGATTTAT                                                     >  SRR4302543.6410327/1‑94 (MQ=60)
                                        ATAGGCGCTTTTGAAATCGACGACGGCGAATTACACGGTGAATCGCCAGGTAATCGAACGTTAACCATTCCTTGTAAATCTGACCCCGATTTAT                                                     >  SRR4302543.5681223/1‑94 (MQ=60)
                                          AGGCGCTTTTGAAATCGACGACGGCGAATTACACGGTGAATCGCCAGGTAATCGAACGTTAACCATTCCTTGTAAATCTGACCCCGATTTATGT                                                   <  SRR4302543.6517246/94‑1 (MQ=60)
                                           GGCGCTTTTGAAATCGACGACGGCGAATTACACGGTGAATCGCCAGGTAATCGAACGTTAACCATTCCTTGTAAATCTGACCCCGATTTATGTA                                                  >  SRR4302543.5349921/1‑94 (MQ=60)
                                           GGCGCTTTTGAAATCGACGACGGCGAATTACACGGTGAATCGCCAGGTAATCGAACGTTAACCATTCCTTGTAAATCTGACCCCGATTTATGTA                                                  >  SRR4302543.5349920/1‑94 (MQ=60)
                                           GGCGCTTTTGAAATCGACGACGGCGAATTACACGGTGAATCGCCAGGTAATCGAACGTTAACCATTCCTTGTAAATCTGACCCCGATTTATGTA                                                  >  SRR4302543.2003196/1‑94 (MQ=60)
                                           GGCGCTTTTGAAATCGACGACGGCGAATTACACGGTGAATCGCCAGGTAATCGAACGTTAACCATTCCTTGTAAATCTGACCCCGATTTATGTA                                                  <  SRR4302543.7326044/94‑1 (MQ=60)
                                            GCGCTTTTGAAATCGACGACGGCGAATTACACGGTGAATCGCCAGGTAATCGAACGTTAACCATTCCTTGTAAATCTGACCCCGATTTATGTAT                                                 <  SRR4302543.7731083/94‑1 (MQ=60)
                                               CTTTTGAAATCGACGACGGCGAATTACACGGTGAATCGCCAGGTAATCGAACGTTAACCATTCCTTGTAAATCTGACCCCGATTTATGTATGCA                                              >  SRR4302543.3848959/1‑94 (MQ=60)
                                               CTTTTGAAATCGACGACGGCGAATTACACGGTGAATCGCCAGGTAATCGAACGTTAACCATTCCTTGTAAATCTGACCCCGATTTATGTATGCA                                              >  SRR4302543.3284578/1‑94 (MQ=60)
                                               CTTTTGAAATCGACGACGGCGAATTACACGGTGAATCGCCAGGTAATCGAACGTTAACCATTCCTTGTAAATCTGACCCCGATTTATGTATGCA                                              >  SRR4302543.2276285/1‑94 (MQ=60)
                                                TTTTGAAATCGACGACGGCGAATTACACGGTGAATCGCCAGGTAATCGAACGTTAACCATTCCTTGTAAATCTGACCCCGATTTATGTATGCAA                                             >  SRR4302543.1002708/1‑94 (MQ=60)
                                                TTTTGAAATCGACGACGGCGAATTACACGGGGAATCGCCAGGTAATCGAACGTTAACCATTCCTTGTAAATCTGACCCCGATTTATGTATGCAA                                             >  SRR4302543.4466032/1‑94 (MQ=60)
                                                 TTTGAAATCGACGACGGCGAATTACACGGTGAATCGCCAGGTAATCGAACGTTAACCATTCCTTGTAAATCTGACCCCGATTTATGTATGCAAC                                            <  SRR4302543.6766601/94‑1 (MQ=60)
                                                 TTTGAAATCGACGACGGCGAATTACACGGTGAATCGCCAGGTAATCGAACGTTAACCATTCCTTGTAAATCTGACCCCGATTTATGTATGCAAC                                            <  SRR4302543.3000592/94‑1 (MQ=60)
                                                  TTGAAATCGACGACGGCGAATTACACGGTGAATCGCCAGGTAATCGAACGTTAACCATTCCTTGTAAATCTGACCCCGATTTATGTATGCAACT                                           >  SRR4302543.79053/1‑94 (MQ=60)
                                                   TGAAATCGACGACGGCGAATTACACGGTGAATCGCCAGGTAATCGAACGTTAACCATTCCTTGTAAATCTGACCCCGATTTATGTATGCAACTG                                          <  SRR4302543.785527/94‑1 (MQ=60)
                                                    GAAATCGACGACGGCGAATTACACGGTGAATCGCCAGGTAATCGAACGTTAACCATTCCTTGTAAATCTGACCCCGATTTATGTATGCAACTGG                                         <  SRR4302543.2417297/94‑1 (MQ=60)
                                                    GAAATCGACGACGGCGAATTACACGGTGAATCGCCAGGTAATCGAACGTTAACCATTCCTTGTAAATCTGACCCCGATTTATGTATGCAACTGG                                         >  SRR4302543.6387264/1‑94 (MQ=60)
                                                     AAATCGACGACGGCGAATTACACGGTGAATCGCCAGGTAATCGAACGTTAACCATTCCTTGTAAATCTGACCCCGATTTATGTATGCAACTGGA                                        >  SRR4302543.6280961/1‑94 (MQ=60)
                                                      AATCGACGACGGCGAATTACACGGTGAATCGCCAGGTAATCGAACGTTAACCATTCCTTGTAAATCTGACCCCGATTTATGTATGCAACTGGAT                                       <  SRR4302543.781924/94‑1 (MQ=60)
                                                      AATCGACGACGGCGAATTACACGGTGAATCGCCAGGTAATCGAACGTTAACCATTCCTTGTAAATCTGACCCCGATTTATGTATGCAACTGGAT                                       <  SRR4302543.1323976/94‑1 (MQ=60)
                                                       ATCGACGACGGCGAATTACACGGTGAATCGCCAGGTAATCGAACGTTAACCATTCCTTGTAAATCTGACCCCGATTTATGTATGCAACTGGATG                                      <  SRR4302543.2519585/94‑1 (MQ=60)
                                                       ATCGACGACGGCGAATTACACGGTGAATCGCCAGGTAATCGAACGTTAACCATTCCTTGTAAATCTGACCCCGATTTATGTATGCAACTGGATG                                      <  SRR4302543.3035723/94‑1 (MQ=60)
                                                       ATCGACGACGGCGAATTACACGGTGAATCGCCAGGTAATCGAACGTTAACCATTCCTTGTAAATCTGACCCCGATTTATGTATGCAACTGGATG                                      <  SRR4302543.7213569/94‑1 (MQ=60)
                                                            CGACGGCGAATTACACGGTGAATCGGCAGGTAATCGAACGTTAACCATTCCTTGTAAATCTGACCCCGATTTATGTATGCAACTGGATGCCTGG                                 <  SRR4302543.6524286/94‑1 (MQ=60)
                                                             GACGGGGAAGTACACGGTGAATCGCCAGGTAATCGAACGTTAACCATTCCTTGTAAATCTGACCCCGATTTATGTATGCAACTGGATGCCTGGG                                <  SRR4302543.3625981/94‑1 (MQ=60)
                                                             GACGGCGAATTACACGGTGAATCGCCAGGTAATCGAACGTTAACCATTCCTTGTAAATCTGACCCCGATTTATGTATGCAACTGGATGCCTGGG                                >  SRR4302543.7526637/1‑94 (MQ=60)
                                                             GACGGCGAATTACACGGTGAATCGCCAGGTAATCGAACGTTAACCATTCCTTGTAAATCTGACCCCGATTTATGTATGCAACTGGATGCCTGGG                                <  SRR4302543.3626221/94‑1 (MQ=60)
                                                              ACGGCGAATTACACGGTGAATCGCCAGGTAATCGAACGTTAACCATTCCTTGTAAATCTGACCCCGATTTATGTATGCAACTGGATGCCTGGGA                               <  SRR4302543.7630011/94‑1 (MQ=60)
                                                               CGGCGAATTACACGGTGAATCGCCAGGTAATCGAACGTTAACCATTCCTTGTAAATCTGACCCCGATTTATGTATGCAACTGGATGCCTGGGAT                              <  SRR4302543.3257351/94‑1 (MQ=60)
                                                                GGCGAATTACACGGTGAATCGCCAGGTAATCGAACGTTAACCATTCCTTGTAAATCTGCCCCCGATTTATGTATGCAACTGGATGCCTGGGATG                             >  SRR4302543.6792633/1‑94 (MQ=60)
                                                                GGCGAATTACACGGTGAATCGCCAGGTAATCGAACGTTAACCATTCCTTGTAAATCTGACCCCGCTTTATGTATGCAACTGGATGCCTGGGATG                             >  SRR4302543.6792632/1‑94 (MQ=60)
                                                                GGCGAATTACACGGTGAATCGCCAGGTAATCGAACGTTAACCATTCCTTGTAAATCTGACCCCGATTTATGTATGCAACTGGATGCCTGGGATG                             >  SRR4302543.102511/1‑94 (MQ=60)
                                                                 GCGAATTACAGGGTGAATCGCCAGGTAATCGAACGTTAACCATTCCTTGTAAATCTGCCCCCGATTTATGTATGCAACTGGATGCCTGGGATGC                            <  SRR4302543.2370862/94‑1 (MQ=60)
                                                                  CGAATTACACGGTGAATCGCCAGGTAATCGAACGTTAACCATTCCTTGTAAATCTGACCCCGATTTATGTATGCAACTGGATGCCTGGGATGCT                           <  SRR4302543.7915601/94‑1 (MQ=60)
                                                                  CGAATTACACGGTGAATCGCCAGGTAATCGAACGTTAACCATTCCTTGTAAATCTGACCCCGATTTATGTATGCAACTGGATGCCTGGGATGCT                           >  SRR4302543.7670893/1‑94 (MQ=60)
                                                                   GAATTACACGGTGAATCGCCAGGTAATCGAACGTTAACCATTCCTTGTAAATCTGACCCCGATTTATGTATGCAACTGGATGCCTGGGATGCTG                          >  SRR4302543.1790254/1‑94 (MQ=60)
                                                                   GAATTACACGGTGAATCGCCAGGTAATCGAACGTTAACCATTCCTTGTAAATCTGACCCCGATTTATGTATGCAACTGGATGCCTGGGATGCTG                          <  SRR4302543.4709972/94‑1 (MQ=60)
                                                                     ATTACACGGTGAATCGCCAGGTAATCGAACGTTAACCATTCCTTGTAAATCTGACCCCGATTTATGTATGCAACTGGATGCCTGGGATGCTGAA                        >  SRR4302543.4937726/1‑94 (MQ=60)
                                                                     ATTACACGGTGAATCGCCAGGTAATCGAACGTTAACCATTCCTTGTAAATCTGACCCCGATTTATGTATGCAACTGGATGCCTGGGATGCTGAA                        >  SRR4302543.1294357/1‑94 (MQ=60)
                                                                         CACGGTGAATCGCCAGGTAATCGAACGTTAACCATTCCTTGTAAATCTGACCCCGATTTATGTATGCAACTGGATGCCTGGGATGCTGAAACCA                    >  SRR4302543.2695258/1‑94 (MQ=60)
                                                                            GGTGAATCGCCAGGTAATCGAACGTTAACCATTCCTTGTAAATCTGACCCCGATTTATGTATGCAACTGGATGCCTGGGATGCTGAAACCAGTA                 >  SRR4302543.463366/1‑94 (MQ=60)
                                                                             GTGAATCGCCAGGTAATCGAACGTTAACCATTCCTTGTAAATCTGACCCCGATTTATGTATGCAACTGGATGCCTGGGATGCTGAAACCAGTAT                >  SRR4302543.3882004/1‑94 (MQ=60)
                                                                              TGAATCGCCAGGTAATCGAACGTTAACCATTCCTTGTAAATCTGACCCCGATTTATGTATGCAACTGGATGCCTGGGATGCTGAAACCAGTATC               <  SRR4302543.70962/94‑1 (MQ=60)
                                                                              TGAATCGCCAGGTAATCGAACGTTAACCATTCCTTGTAAATCTGACCACGATTTATGTATGCAACTGGATGCCTGGGATGCTGAAACCAGTATC               >  SRR4302543.6659374/1‑94 (MQ=60)
                                                                               GAATCGCCAGGTAATCGAACGTTAACCATTCCTTGTAAATCTGACCCCGATTTATGTATGCAACTGGATGCCTGGGATGCTGAAACCAGTATCC              >  SRR4302543.1586981/1‑94 (MQ=60)
                                                                               GAATCGCCAGGTAATCGAACGTTAACCATTCCTTGTAAATCTGACCCCGATTTATGTATGCAACTGGATGCCTGGGATGCTGAAACCAGTATCC              >  SRR4302543.7730929/1‑94 (MQ=60)
                                                                               GAATCGCCAGGTAATCGAACGTTAACCATTCCTTGTAAATCTGACCCCGATTTATGTATGCAACTGGATGCCTGGGATGCTGAAACCAGTATCC              >  SRR4302543.7730928/1‑94 (MQ=60)
                                                                               GAATCGCCAGGTAATCGAACGTTAACCATTCCTTGTAAATCTGACCCCGATTTATGTATGCAACTGGATGCCTGGGATGCTGAAACCAGTATCC              >  SRR4302543.3620528/1‑94 (MQ=60)
                                                                               GAATCGCCAGGTAATCGAACGTTAACCATTCCTTGTAAATCTGACCCCGATTTATGTATGCAACTGGATGCCTGGGATGCTGAAACCAGTATCC              >  SRR4302543.4205828/1‑94 (MQ=60)
                                                                                 ATCGCCAGGTAATCGAACGTTAACCATTCCTTGTAAATCTGACCCCGATTTATGTATGCAACTGGATGCCTGGGATGCTGAAACCAGTATCCCT            <  SRR4302543.820991/94‑1 (MQ=60)
                                                                                 ATCGCCAGGTAATCGAACGTTAACCATTCCTTGTAAATCTGACCCCGATTTATGTATGCAACTGGATGCCTGGGATGCTGAAACCAGTATCCCT            <  SRR4302543.5192662/94‑1 (MQ=60)
                                                                                   CGCCAGGTAATCGAACGTTAACCATTCCTTGTAAATCTGACCCCGATTTATGTATGCAACTGGATGCCTGGGATGCTGAAACCAGTATCCCTGC          >  SRR4302543.1251745/1‑94 (MQ=60)
                                                                                    GCCAGGTAATCGAACGTTAACCATTCCTTGTAAATCTGACCCCGATTTATGTATGCAACTGGATGCCTGGGATGCTGAAACCAGTATCCCTGCC         >  SRR4302543.1947866/1‑94 (MQ=60)
                                                                                      CAGGTAATCGAACGTTAACCATTCCTTGTAAATCTGACCCCGATTTATGTATGCAACTGGATGCCTGGGATGCTGAAACCAGTATCCCTGCCCT       >  SRR4302543.7570087/1‑94 (MQ=60)
                                                                                      CAGGTAATCGAACGTTAACCATTCCTTGTAAATCTGACCCCGATTTATGTATGCAACTGGATGCCTGGGATGCTGAAACCAGTATCCCTGCCCT       <  SRR4302543.555390/94‑1 (MQ=60)
                                                                                         GTAATCGAACGTTAACCATTCCTTGTAAATCTGACCCCGATTTATGTATGCAACTGGATGCCTGGGATGCTGAAACCAGTATCCCTGCCCTGCT    >  SRR4302543.1976187/1‑94 (MQ=60)
                                                                                           AATCGAACGTTAACCATTCCTTGTAAATCTGACCCCGATTTATGTATGCAACTGGATGCCTGGGATGCTGAAACCAGTATCCCTGCCCTGCTAA  >  SRR4302543.2167315/1‑94 (MQ=60)
                                                                                           AATCGAACGTTAACCATTCCTTGTAAATCTGACCCCGATTTATGTATGCAACTGGATGCCTGGGATGCTGAAACCAGTATCCCTGCCCTGCTAA  <  SRR4302543.3263276/94‑1 (MQ=60)
                                                                                           |                                                                                             
CAGCTAAATGGAGAGCACGAAGATGAAAACCAGTGTGCGCATAGGCGCTTTTGAAATCGACGACGGCGAATTACACGGTGAATCGCCAGGTGATCGAACGTTAACCATTCCTTGTAAATCTGACCCCGATTTATGTATGCAACTGGATGCCTGGGATGCTGAAACCAGTATCCCTGCCCTGCTAA  >  NC_000913/1919782‑1919966

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 10 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑