Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I1 R1	1696	279.3	15874187	97.8%	15524954	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	1,920,485	T→C	E170G (GAA→GGA)	b1838 ←	protein phosphatase 1

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	1,920,485	0	T	C	100.0%	684.4 / NA	218	E170G (GAA→GGA)	b1838	protein phosphatase 1
Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (107/111); total (107/111)

Only 100 of 224 total aligned reads displayed.

TGCAGGTTGCCAATATCCACGCGATGTCGCAACGGTGTATGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTTCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTCATAAACATCATCTGGATAATCGGCATGAGCA  >  NC_000913/1920395‑1920574

 gCAGGTTGCCAATATCCACGCGATGTCGCAACGGTGTATGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCAc                                                                                        <  1:6543240/93‑1 (MQ=255)

  cAGGTTGCCAATATCCACGCGATGTCGCAACGGTGTATGACCAAACCAGAAATGATCAGCCCCTGTAATTCCCTGCCCTTTTTGGCGTCCAcc                                                                                       <  1:162462/93‑1 (MQ=255)

  cAGGTTGCCAATATCCACGCGATGTCGCAACGGTGTATGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCAcc                                                                                       <  1:7513897/93‑1 (MQ=255)

  cAGGTTGCCAATATCCACGCGATGTCGCAACGGTGTATGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCAcc                                                                                       <  1:7695304/93‑1 (MQ=255)

   aGGTTGCCAATATCCACGCGATGTCGCAACGGTGTATGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCt                                                                                      >  2:7869775/1‑93 (MQ=255)

   aGGTTGCCAATATCCACGCGATGTCGCAACGGTGTATGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCt                                                                                      >  1:485111/1‑93 (MQ=255)

     gTTGCCAATATCCACGCGATGTCGCAACGGTGTATGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTaa                                                                                    >  1:5675112/1‑93 (MQ=255)

      ttGCCAATATCCACGCGATGTCGCAACGGTGTATGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAAt                                                                                   >  1:3753902/1‑93 (MQ=255)

       tGCCAATATCCACGCGATGTCGCAACGGTGTATGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATc                                                                                  <  1:7640058/93‑1 (MQ=255)

         ccAATATCCACGCGATGTCGCAACGGTGTATGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATcgc                                                                                <  1:2485188/93‑1 (MQ=255)

         ccAATATCCACGCGATGTCGCAACGGTGTATGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATcgc                                                                                >  1:3107826/1‑93 (MQ=255)

          cAATATCCACGCGATGTCGCAACGGTGTATGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATcgcg                                                                               >  2:4166640/1‑93 (MQ=255)

           aaTATCCACGCGATGTCGCAACGGTGTATGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGa                                                                              >  2:2554627/1‑93 (MQ=255)

           aaTATCCACGCGATGTCGCAACGGTGTATGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGa                                                                              >  2:6534363/1‑93 (MQ=255)

            atatCCACGCGATGTCGCAACGGTGTATGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAg                                                                             >  2:1690786/1‑93 (MQ=255)

            atatCCACGCGATGTCGCAACGGTGTATGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAg                                                                             >  1:3475748/1‑93 (MQ=255)

            atatCCACGCGATGTCGCAACGGTGTATGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAg                                                                             <  1:4388121/93‑1 (MQ=255)

             tatCCACGCGATGTCGCAACGGTGTATGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGc                                                                            <  1:3069113/93‑1 (MQ=255)

             tatCCACGCGATGTCGCAACGGTGTATGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGc                                                                            >  2:5048352/1‑93 (MQ=255)

              atCCACGCGATGTCGCAACGGTGTATGACCAAATCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCg                                                                           <  1:7602481/93‑1 (MQ=255)

                ccACGCGATGTCGCAACGGTGTATGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGc                                                                         >  2:593390/1‑93 (MQ=255)

                ccACGCGATGTCGCAACGGTGTATGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGc                                                                         <  1:4795602/93‑1 (MQ=255)

                ccACGCGATGTCGCAACGGTGTATGACCAAACCAGAAATGATCAGCACCTGTAATTCACTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGc                                                                         >  2:1140241/1‑93 (MQ=255)

                 cACGCGATGTCGCAACGGTGTATGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCt                                                                        >  2:792746/1‑93 (MQ=255)

                  ccgcgATGTCGCAACGGTGTATGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTc                                                                       <  2:4346265/92‑1 (MQ=255)

                  aCGCGATGTCGCAACGGTGTATGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCCCCTAATCGCGAGCGGCTc                                                                       <  2:3652112/93‑1 (MQ=255)

                  aCGCGATGTCGCAACGGTGTATGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTc                                                                       >  1:3975065/1‑93 (MQ=255)

                  aCGCGATGTCGCAACGGTGTATGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTc                                                                       >  2:6311267/1‑93 (MQ=255)

                  aCGCGATGTCGCAACGGTGTATGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTc                                                                       <  2:4129404/93‑1 (MQ=255)

                       aTGTCGCAACGGTGTATGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACaa                                                                  <  1:2226532/93‑1 (MQ=255)

                        tGTCGCAACGGTGTATGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAg                                                                 >  1:5508711/1‑93 (MQ=255)

                           cGCAACGGTGTATGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGAcc                                                              <  2:2041821/93‑1 (MQ=255)

                            gCAACGGTGTATGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCt                                                             >  1:806672/1‑93 (MQ=255)

                             cAACGGTGTATGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTg                                                            >  2:3568276/1‑93 (MQ=255)

                              aaCGGTGTATGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGa                                                           >  1:2034970/1‑93 (MQ=255)

                               aCGGTGTATGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGAt                                                          <  1:5552573/93‑1 (MQ=255)

                                cGGTGTATGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATg                                                         <  1:972530/93‑1 (MQ=255)

                                 ggTGTATGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGc                                                        <  2:4635158/93‑1 (MQ=255)

                                  gtgtATGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCa                                                       >  2:382171/1‑93 (MQ=255)

                                   tgtATGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCaa                                                      >  2:4078972/1‑93 (MQ=255)

                                    gtATGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCaaa                                                     <  2:2323778/93‑1 (MQ=255)

                                     tATGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAAt                                                    >  1:7033191/1‑93 (MQ=255)

                                     tATGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAAt                                                    <  2:3355759/93‑1 (MQ=255)

                                      aTGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATc                                                   <  2:1558856/93‑1 (MQ=255)

                                      aTGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATc                                                   >  2:3934981/1‑93 (MQ=255)

                                      aTGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATc                                                   >  1:2785622/1‑93 (MQ=255)

                                       tGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCa                                                  >  1:2865867/1‑93 (MQ=255)

                                         aCCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAAc                                                <  1:515734/93‑1 (MQ=255)

                                         aCCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAAc                                                >  1:6211052/1‑93 (MQ=255)

                                           cAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGt                                              <  2:2205994/93‑1 (MQ=255)

                                            aaaCCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTc                                             >  1:2624685/1‑93 (MQ=255)

                                            aaaCCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTc                                             >  1:667882/1‑93 (MQ=255)

                                             aaCCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTcc                                            <  1:5972689/93‑1 (MQ=255)

                                              aCCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCt                                           <  2:6064762/93‑1 (MQ=255)

                                               ccAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCtt                                          >  1:1901249/1‑93 (MQ=255)

                                                cAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCttt                                         <  2:5861965/93‑1 (MQ=255)

                                                cAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCttt                                         <  1:4041649/93‑1 (MQ=255)

                                                cAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCttt                                         <  1:6288601/93‑1 (MQ=255)

                                                 aGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCtttt                                        <  2:5781583/93‑1 (MQ=255)

                                                 aGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCtttt                                        <  1:7131493/93‑1 (MQ=255)

                                                 aGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCtttt                                        <  2:4418822/93‑1 (MQ=255)

                                                 aGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCtttt                                        >  2:7317112/1‑93 (MQ=255)

                                                 aGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCtttt                                        >  2:7614018/1‑93 (MQ=255)

                                                    aaTGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGcc                                     <  2:28448/93‑1 (MQ=255)

                                                      tGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCAt                                   >  1:1242282/1‑93 (MQ=255)

                                                      tGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCAt                                   <  2:3144599/93‑1 (MQ=255)

                                                       gATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCAtt                                  <  2:1795008/93‑1 (MQ=255)

                                                          taGCACCTGTAATTCCCTGCCCTTTTTGGCCTCCACCCTATCGCGAGCGGCTCCACAAGACCTGGTGCAAATCAACGTCCTTTTGCCATTCAt                               <  1:1647912/92‑1 (MQ=255)

                                                          cAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTCAt                               >  2:482746/1‑93 (MQ=255)

                                                           aGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCAGAAGACCTGATGCAAATCAACGTCCTTTTGCCATTCATa                              <  1:7852779/93‑1 (MQ=255)

                                                           aGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTCATa                              >  2:3829482/1‑93 (MQ=255)

                                                            gCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTCATaa                             >  2:211162/1‑93 (MQ=255)

                                                            gCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTCATaa                             >  2:5637795/1‑93 (MQ=255)

                                                            gCACCTATAATTGCCTGCCCTTTTAGGCTTTCAGCTAATCGCGAGCGGCTCCAAAAGGCCTGATGCAAATCAACGTCCTTTTGCCATTCATaa                             <  2:5523851/93‑1 (MQ=255)

                                                             cACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTCATaaa                            <  1:885874/93‑1 (MQ=255)

                                                                cTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTCATACAcat                         >  1:7082866/1‑93 (MQ=255)

                                                                 tGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCCCAAGACCTGATGCAAATCAACCTCCTTTTTCCATTCATAAAaatc                        >  2:7176200/1‑93 (MQ=255)

                                                                 tGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTCATAAAcatc                        >  2:3110919/1‑93 (MQ=255)

                                                                    aaTTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTCATAAACatcatc                     >  1:1158828/1‑93 (MQ=255)

                                                                     aTTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTCATAAACATCATCt                    >  1:6723947/1‑93 (MQ=255)

                                                                      ttCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTCATAAACATCATCTg                   >  2:3578058/1‑93 (MQ=255)

                                                                         ccTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTCATAAACATCATCTGGAt                >  2:5431887/1‑93 (MQ=255)

                                                                         ccTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTCATAAACATCATCTGGAt                >  1:6023709/1‑93 (MQ=255)

                                                                          cTGCCCTTTTTCGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTCATAAACATCATCTGGATa               >  2:4566742/1‑93 (MQ=255)

                                                                           tGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTCATAAACATCATCTGGATaa              <  2:4000612/93‑1 (MQ=255)

                                                                           tGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTCATAAACATCATCTGGATaa              >  1:1912101/1‑93 (MQ=255)

                                                                           tGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTCATAAACATCATCTGGATaa              <  1:3368800/93‑1 (MQ=255)

                                                                            gCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTCATAAACATCATCTGGATAAt             >  2:6779271/1‑93 (MQ=255)

                                                                            gCCCTGTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTCATAAACATCATCTGGATAAt             <  2:7103731/93‑1 (MQ=255)

                                                                             cccTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTCATAAACATCATCTGGATAATc            <  2:6658574/93‑1 (MQ=255)

                                                                             cccTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTCATAAACATCATCTGGATAATc            <  1:4668074/93‑1 (MQ=255)

                                                                             cccTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTCATAAACATCATCTGGATAATc            >  2:7748754/1‑93 (MQ=255)

                                                                                 ttttGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTCATAAACATCATCTGGATAATCGGCa        <  1:4160029/93‑1 (MQ=255)

                                                                                   ttGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTCATAAACATCATCTGGATAATCGGCacg      <  1:6408313/93‑3 (MQ=255)

                                                                                    tGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTCATAAACATCATCTGGATAATCGGCATGa     <  2:402609/93‑1 (MQ=255)

                                                                                    tGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTCATAAACATCATCTGGATAATCGGCATGa     >  1:5745937/1‑93 (MQ=255)

                                                                                      gCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTCATAAACATCATCTGGATAATCGGCATGAGc   <  1:6912522/93‑1 (MQ=255)

                                                                                      gCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTCATAAACATCATCTGGATAATCGGCATGAGc   <  1:1774046/93‑1 (MQ=255)

                                                                                      gCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTCATAAACATCATCTGGATAATCGGCATGAGc   <  2:6977460/93‑1 (MQ=255)

                                                                                       cGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTCATAAACATCATCTGGATAATCGGCATGAGCa  >  2:1199865/1‑93 (MQ=255)

TGCAGGTTGCCAATATCCACGCGATGTCGCAACGGTGTATGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTTCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTCATAAACATCATCTGGATAATCGGCATGAGCA  >  NC_000913/1920395‑1920574

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 21 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

AATGCAGGTTGCCAATATCCACGCGATGTCGCAACGGTGTATGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTTCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTCATAAACATCATCTGGATAATCGGCATGAGCAATAA  >  NC_000913/1920393‑1920578

AATGCAGGTTGCCAATATCCACGCGATGTCGCAACGGTGTATGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCC                                                                                              <  SRR4302543.5024638/94‑1 (MQ=60)

AATGCAGGTTGCCAATATCCACGCGATGTCGCAACGGTGTATGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCC                                                                                              >  SRR4302543.3439955/1‑94 (MQ=60)

 ATGCAGGTTGCCAATATCCACGCGATGTCGCAACGGTGTATGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCA                                                                                             >  SRR4302543.3126599/1‑94 (MQ=60)

 ATGCAGGTTGCCAATATCCACGCGATGTCGCAACGGTGTATGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCA                                                                                             <  SRR4302543.4523180/94‑1 (MQ=60)

   GCAGGTTGCCAATATCCACGCGATGTCGCAACGGTGTATGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACC                                                                                           <  SRR4302543.6604824/94‑1 (MQ=60)

    CAGGTTGCCAATATCCACGCGATGTCGCAACGGTGTATGACCAAACCAGAAATGATCAGCCCCTGTAATTCCCTGCCCTTTTTGGCGTCCACCT                                                                                          <  SRR4302543.163859/94‑1 (MQ=60)

    CAGGTTGCCAATATCCACGCGATGTCGCAACGGTGTATGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCT                                                                                          >  SRR4302543.489598/1‑94 (MQ=60)

    CAGGTTGCCAATATCCACGCGATGTCGCAACGGTGTATGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCT                                                                                          >  SRR4302543.5747866/1‑94 (MQ=60)

    CAGGTTGCCAATATCCACGCGATGTCGCAACGGTGTATGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCT                                                                                          <  SRR4302543.7768147/94‑1 (MQ=60)

    CAGGTTGCCAATATCCACGCGATGTCGCAACGGTGTATGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCT                                                                                          <  SRR4302543.7585658/94‑1 (MQ=60)

     AGGTTGCCAATATCCACGCGATGTCGCAACGGGGTATGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTA                                                                                         >  SRR4302543.4548638/1‑94 (MQ=60)

      GGTTGCCAATATCCACGCGATGTCGCAACGGTGTATGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAA                                                                                        >  SRR4302543.5726915/1‑94 (MQ=60)

       GTTGCCAATATCCACGCGATGTCGCAACGGTGTATGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAAT                                                                                       >  SRR4302543.7586753/1‑94 (MQ=60)

       GTTGCCAATATCCACGCGATGTCGCAACGGTGTATGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAAT                                                                                       >  SRR4302543.3786928/1‑94 (MQ=60)

       GTTGCCAATATCCACGCGATGTCGCAACGGTGTATGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAAT                                                                                       <  SRR4302543.6042525/94‑1 (MQ=60)

        TTGCGAATATCCACGCGATGTCGCAACGGTGTATGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATC                                                                                      <  SRR4302543.7682161/94‑1 (MQ=60)

         TGCCAATATCCACGCGATGTCGCAACGGTGTATGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCG                                                                                     <  SRR4302543.7712531/94‑1 (MQ=60)

          GCCAATATCCACGCGATGTCGCAACGGTGTATGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGC                                                                                    >  SRR4302543.3135781/1‑94 (MQ=60)

           CCAATATCCACGCGATGTCGCAACGGTGTATGACCAAACCAGAAATGATCAGCACCTGTACTTCCCTGCCCTTTTTGGCGTCCACCTAATCGCG                                                                                   >  SRR4302543.1918110/1‑94 (MQ=60)

           CCAATATCCACGCGATGTCGCAACGGTGTATGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCG                                                                                   <  SRR4302543.2507701/94‑1 (MQ=60)

           CCAATATCCACGCGATGTCGCAACGGTGTATGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCG                                                                                   <  SRR4302543.2507702/94‑1 (MQ=60)

            CAATATCCACGCGATGTCGCAACGGTGTATGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGA                                                                                  >  SRR4302543.3967372/1‑94 (MQ=60)

            CAATATCCACGCGATGTCGCAACGGTGTATGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGA                                                                                  >  SRR4302543.1824108/1‑94 (MQ=60)

             AATATCCACGCGATGTCGCAACGGTGTATGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAG                                                                                 >  SRR4302543.3506879/1‑94 (MQ=60)

              ATATCCACGCGATGTCGCAACGGTGTATGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGC                                                                                <  SRR4302543.4427906/94‑1 (MQ=60)

              ATATCCACGCGATGTCGCAACGGTGTATGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGC                                                                                >  SRR4302543.2729741/1‑94 (MQ=60)

               TATCCACGCGATGTCGCAACGGTGTATGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCG                                                                               <  SRR4302543.3096717/94‑1 (MQ=60)

                ATCCACGCGATGTCGCAACGGTGTATGACCAAATCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGG                                                                              <  SRR4302543.7674683/94‑1 (MQ=60)

                  CCACGCGATGTCGCAACGGTGTATGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCT                                                                            <  SRR4302543.4839434/94‑1 (MQ=60)

                   CACGCGATGTCGCAACGGTGTATGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTC                                                                           >  SRR4302543.4010304/1‑94 (MQ=60)

                    ACGCGATGTCGCAACGGTGTATGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCC                                                                          >  SRR4302543.2089403/1‑94 (MQ=60)

                     CGCGATGTCGCAACGTTGTATGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCA                                                                         <  SRR4302543.3164015/94‑1 (MQ=60)

                        GATGTCGCAACGGTGTATGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAA                                                                      >  SRR4302543.4990390/1‑94 (MQ=60)

                         ATGTCGCAACGGTGTATGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAG                                                                     <  SRR4302543.3571250/94‑1 (MQ=60)

                         ATGTCGCAACGGTGTATGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAG                                                                     >  SRR4302543.5558724/1‑94 (MQ=60)

                         ATGTCGCAACGGTGTATGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAG                                                                     <  SRR4302543.2246633/94‑1 (MQ=60)

                         ATGTCGCAACGGTGTATGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAG                                                                     <  SRR4302543.6114966/94‑1 (MQ=60)

                         ATGTCGCAACGGTGTATGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAG                                                                     <  SRR4302543.6863654/94‑1 (MQ=60)

                           GTCGCAACGGTGTATGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGAC                                                                   <  SRR4302543.7584269/94‑1 (MQ=60)

                           GCCGCAACGGTGTATGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGAC                                                                   <  SRR4302543.3154293/94‑1 (MQ=60)

                             CGCAACGGTGTATGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCT                                                                 >  SRR4302543.2401759/1‑94 (MQ=60)

                             CGCAACGGTGTATGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCT                                                                 >  SRR4302543.813777/1‑94 (MQ=60)

                              GCAACGGTGTATGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTG                                                                <  SRR4302543.370056/94‑1 (MQ=60)

                               CAACGGTGTATGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGA                                                               >  SRR4302543.1202568/1‑94 (MQ=60)

                               CAACGGTGTATGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGA                                                               >  SRR4302543.148281/1‑94 (MQ=60)

                               CAACGGTGTATGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGA                                                               >  SRR4302543.2053243/1‑94 (MQ=60)

                                AACGGTGTATGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGAT                                                              <  SRR4302543.7754687/94‑1 (MQ=60)

                                AACGGTGTATGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGAT                                                              <  SRR4302543.5019676/94‑1 (MQ=60)

                                 ACGGTGTATGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATG                                                             <  SRR4302543.5603075/94‑1 (MQ=60)

                                  CGGTGTATGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGC                                                            <  SRR4302543.981092/94‑1 (MQ=60)

                                  CGGTGTATGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGC                                                            <  SRR4302543.5598105/94‑1 (MQ=60)

                                      GTATGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAAT                                                        >  SRR4302543.7100845/1‑94 (MQ=60)

                                       TATGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATC                                                       >  SRR4302543.7069425/1‑94 (MQ=60)

                                       TATGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATC                                                       >  SRR4302543.2811035/1‑94 (MQ=60)

                                        ATGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCA                                                      >  SRR4302543.473750/1‑94 (MQ=60)

                                        ATGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCA                                                      >  SRR4302543.2891991/1‑94 (MQ=60)

                                          GACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAAC                                                    >  SRR4302543.6269698/1‑94 (MQ=60)

                                           ACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACG                                                   <  SRR4302543.5888030/94‑1 (MQ=60)

                                           ACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACG                                                   <  SRR4302543.520526/94‑1 (MQ=60)

                                             CAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTC                                                 <  SRR4302543.1924674/94‑1 (MQ=60)

                                             CAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTC                                                 <  SRR4302543.1639109/94‑1 (MQ=60)

                                             CAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTC                                                 >  SRR4302543.2648446/1‑94 (MQ=60)

                                             CAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTC                                                 >  SRR4302543.674031/1‑94 (MQ=60)

                                               AACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCT                                               <  SRR4302543.6027395/94‑1 (MQ=60)

                                                ACCAGAAATGATCAGCCCCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTT                                              <  SRR4302543.5312679/94‑1 (MQ=60)

                                                ACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTT                                              >  SRR4302543.1918357/1‑94 (MQ=60)

                                                 CCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTT                                             <  SRR4302543.6767848/94‑1 (MQ=60)

                                                  CAGAAATGATCAGCGCCAGTAATTCCCTGCCCTTTTTGGCGGCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTT                                            <  SRR4302543.6891582/94‑1 (MQ=60)

                                                  CAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTT                                            <  SRR4302543.7949063/94‑1 (MQ=60)

                                                  CAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTT                                            <  SRR4302543.6347828/94‑1 (MQ=60)

                                                  CAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTT                                            <  SRR4302543.4077816/94‑1 (MQ=60)

                                                   AGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTG                                           >  SRR4302543.718661/1‑94 (MQ=60)

                                                   AGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTG                                           <  SRR4302543.7200794/94‑1 (MQ=60)

                                                       ATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCAT                                       <  SRR4302543.4041660/94‑1 (MQ=60)

                                                       ATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCAT                                       >  SRR4302543.1253444/1‑94 (MQ=60)

                                                       ATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCAT                                       <  SRR4302543.2442275/94‑1 (MQ=60)

                                                            TAGCACCTGTAATTCCCTGCCCTTTTTGGCCTCCACCCTATCGCGAGCGGCTCCACAAGACCTGGTGCAAATCAACGTCCTTTTGCCATTCATA                                  <  SRR4302543.1662649/94‑1 (MQ=60)

                                                             AGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCAGAAGACCTGATGCAAATCAACGTCCTTTTGCCATTCATAA                                 <  SRR4302543.7926768/94‑1 (MQ=60)

                                                             AGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTCATAA                                 >  SRR4302543.4862202/1‑94 (MQ=60)

                                                             AGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTCATAA                                 <  SRR4302543.7926767/94‑1 (MQ=60)

                                                             AGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTCATAA                                 >  SRR4302543.6325428/1‑94 (MQ=60)

                                                              GCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTCATAAA                                >  SRR4302543.3094485/1‑94 (MQ=60)

                                                               CACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTCATAAAC                               <  SRR4302543.893723/94‑1 (MQ=60)

                                                               CACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTCATAAAC                               <  SRR4302543.875943/94‑1 (MQ=60)

                                                               CACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTCATAAAC                               <  SRR4302543.893725/94‑1 (MQ=60)

                                                                 CCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTCATACACAT                             >  SRR4302543.7151651/1‑94 (MQ=60)

                                                                  CTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTCATAAACATC                            >  SRR4302543.1774860/1‑94 (MQ=60)

                                                                  CTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTCATAAACATC                            >  SRR4302543.5806031/1‑94 (MQ=60)

                                                                   TGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTCATAAACATCA                           >  SRR4302543.3031203/1‑94 (MQ=60)

                                                                     TAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCACCGTCCTTTTGCCATTCATAAACATCATC                         >  SRR4302543.7803628/1‑94 (MQ=60)

                                                                     TAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTCATAAACATCATC                         >  SRR4302543.1169382/1‑94 (MQ=60)

                                                                      AATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTCATAAACATCATCT                        >  SRR4302543.6787483/1‑94 (MQ=60)

                                                                        TTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTCATAAACATCATCTGG                      <  SRR4302543.6371664/94‑1 (MQ=60)

                                                                        TTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTCATAAACATCATCTGG                      <  SRR4302543.6371663/94‑1 (MQ=60)

                                                                         TCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTCATAAACATCATCTGGA                     <  SRR4302543.3429912/94‑1 (MQ=60)

                                                                          CCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTCATAAACATCATCTGGAT                    >  SRR4302543.6079695/1‑94 (MQ=60)

                                                                            CTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTCATAAACATCATCTGGATAA                  >  SRR4302543.1929335/1‑94 (MQ=60)

                                                                            CTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTCATAAACATCATCTGGATAA                  <  SRR4302543.198432/94‑1 (MQ=60)

                                                                             TGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTCATAAACATCATCTGGATAAT                 <  SRR4302543.3399064/94‑1 (MQ=60)

                                                                             TGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTCATAAACATCATCTGGATAAT                 <  SRR4302543.4095533/94‑1 (MQ=60)

                                                                               CCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTCATAAACATCATCTGGATAATCG               <  SRR4302543.4710619/94‑1 (MQ=60)

                                                                                CCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTCATAAACATCATCTGGATAATCGG              >  SRR4302543.6471969/1‑94 (MQ=60)

                                                                                 CTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTCATAAACATCATCTGGATAATCGGC             >  SRR4302543.2841103/1‑94 (MQ=60)

                                                                                 CTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTCATAAACATCATCTGGATAATCGGC             >  SRR4302543.4268276/1‑94 (MQ=60)

                                                                                   TTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTCATAAACATCATCTGGATAATCGGCAT           <  SRR4302543.5648077/94‑1 (MQ=60)

                                                                                   TTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTCATAAACATCATCTGGATAATCGGCAT           <  SRR4302543.4197673/94‑1 (MQ=60)

                                                                                   TTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTCATAAACATCATCTGGATAATCGGCAT           <  SRR4302543.670531/94‑1 (MQ=60)

                                                                                    TTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTCATAAACATCATCTGGATAATCGGCATG          <  SRR4302543.7344626/94‑1 (MQ=60)

                                                                                     TTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTCATAAACATCATCTGGATAATCGGCATGA         >  SRR4302543.5798310/1‑94 (MQ=60)

                                                                                     TTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTCATAAACATCATCTGGATAATCGGCACGA         <  SRR4302543.6468666/94‑1 (MQ=60)

                                                                                       GGCGTCCACCTAATCGCGAGCGTCTCCACAAGATCTGATGCAAATCAACGTCCTTTTGCCATTCATAAACATCATCTGGATAATCGGCATGAGC       <  SRR4302543.7125514/94‑1 (MQ=60)

                                                                                        GCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTCATAAACATCATCTGGATAATCGGCATGAGCA      <  SRR4302543.1789903/94‑1 (MQ=60)

                                                                                        GCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTCATAAACATCATCTGGATAATCGGCATGAGCA      <  SRR4302543.4421718/94‑1 (MQ=60)

                                                                                        GCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTCATAAACATCATCTGGATAATCGGCATGAGCA      <  SRR4302543.6977502/94‑1 (MQ=60)

                                                                                         CGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTCATAAACATCATCTGGATAATCGGCATGAGCAA     >  SRR4302543.5506247/1‑94 (MQ=60)

                                                                                          GTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTCATAAACATCATCTGGATCATCGGCATGAGCCAT    >  SRR4302543.2740205/1‑94 (MQ=60)

                                                                                          GTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTCATAAACATCATCTGGATAATCGGCATGAGCAAT    >  SRR4302543.1553000/1‑94 (MQ=60)

                                                                                          GTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTCATAAACATCATCTGGATAATCGGCATGAGCAAT    >  SRR4302543.2740206/1‑94 (MQ=60)

                                                                                           TCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTCATAAACATCATCTGGATAATCGGCATGAGCAATA   >  SRR4302543.3243946/1‑94 (MQ=60)

                                                                                           TCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTCATAAACATCATCTGGATAATCGGCATGAGCAATA   <  SRR4302543.4482132/94‑1 (MQ=60)

                                                                                            CCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTCATAAACATCATCTGGATAATCGGCATGAGCAATAA  >  SRR4302543.3004051/1‑94 (MQ=60)

AATGCAGGTTGCCAATATCCACGCGATGTCGCAACGGTGTATGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTTCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTCATAAACATCATCTGGATAATCGGCATGAGCAATAA  >  NC_000913/1920393‑1920578

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 2 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`