Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I1 R1	1696	279.3	15874187	97.8%	15524954	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	1,920,902	T→C	Q31R (CAG→CGG)	b1838 ←	protein phosphatase 1

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	1,920,902	0	T	C	100.0%	793.3 / NA	252	Q31R (CAG→CGG)	b1838	protein phosphatase 1
Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (106/146); total (106/146)

Only 100 of 254 total aligned reads displayed.

CTTTGCGGCCCACGATCGATAACGTCTCCCACTGAGATAAGTAAATCTCGCCACGGATCAAAACGACAATGCCATAATTTGCGGCGCAACTGCTCAAGACAACCGTGTATATCGCCAGAAAGCCAGATATGTCGCCATTGATGACCCGCAATTCTCTGATAAACGGGCGCAGGCTGTTTC  >  NC_000913/1920812‑1920991

cTTTGCGGCCCACGATCGATAACGTCTCCCACTGAGATAAGTAAATCTCGCCACGGATCAAAACGACAATGCCATAATTTGCGGCGCAACCGc                                                                                         >  1:1885387/1‑93 (MQ=255)

    gCGGCCCACGATCGATAACGTCTCCCACTGAGATAAGTAAATCTCGCCACGGATCAAAACGACAATGCCATAATTTGCGGCGCAACCGCTCaa                                                                                     <  1:5011857/93‑1 (MQ=255)

    gCGGCCCACGATCGATAACGTCTCCCACTGAGATAAGTAAATCTCGCCACGGATCAAAACGACAATGCCATAATTTGCGGCGCAACCGCTCaa                                                                                     <  2:2728439/93‑1 (MQ=255)

      ggCCCACGATCGATAACGTCTCCCACTGAGATAAGTAAATCTCGCCACGGATCAAAACGACAATGCCATAATTTGCGGCGCAACCGCTCAAGa                                                                                   >  2:2642144/1‑93 (MQ=255)

          cACGATCGATAACGTCTCCCACTGAGATAAGTAAATCTCGCCACGGATCAAAACGACAATGCCATAATTTGCGGCGCAACCGCTCAAGACAAc                                                                               >  1:4368805/1‑93 (MQ=255)

          cACGATCGATAACGTCTCCCACTGAGATAAGTAAATCTCGCCACGGATCAAAACGACAATGCCATAATTTGCGGCGCAACCGCTCAAGACAAc                                                                               <  2:3764268/93‑1 (MQ=255)

          cACGATCGATAACGTCTCCCACTGAGATAAGTAAATCTCGCCACGGATCAAAACGACAATGCCATAATTTGCGGCGCAACCGCTCAAGACAAc                                                                               >  2:1090419/1‑93 (MQ=255)

          cACGATCGATAACGTCTCCCACTGAGATAAGTAAATCTCGCCACGGATCAAAACGACAATGCCATAATTTGCGGCGCAACCGCTCAAGACAAc                                                                               >  1:7423922/1‑93 (MQ=255)

           aCGATCGATAACGTCTCCCACTGAGATAAGTAAATCTCGCCACGGATCAAAACGACAATGCGATAATTTGCGGCGCAACCGCTCAAGACAAcc                                                                              >  1:560872/1‑93 (MQ=255)

           aCGATCGATAACGTCTCCCACTGAGATAAGTAAATCTCGCCACGGATCAAAACGACAATGCCATAATTTGCGGCGCAACCGCTCAAGACAAcc                                                                              >  1:6512603/1‑93 (MQ=255)

            cgatcgatAACGTCTCCAACTGAGATAAGTAAATCTCGCCACGGATCAAAACGACAATGCCATAATTTGCGGCGCAACCGCTCAAGACAACCg                                                                             <  2:356873/93‑1 (MQ=255)

             gatcgatAACGTCTCCCACTGAGATAAGTAAATCTCGCCACGGATCAAAACGACAATGCCATAATTTGCGGCGCAACCGCTCAAGACAACCgt                                                                            <  2:7914730/93‑1 (MQ=255)

              atcgatAACGTCTCCCACTGAGATCAGTCAATCTCGCCACGGATCAAAACGACAATGCCATAATTTGCGGCGCAACCGCTCAAGACAACCgtg                                                                           <  1:7044457/93‑1 (MQ=255)

              atcgatAACGTCTCCCACTGAGATAAGTAAATCTCGCCACGGATCAAAACGACAATGCCATAATTTGCGGCGCAACCGCTCAAGACAACCgtg                                                                           >  2:6041505/1‑93 (MQ=255)

              atcgagAACGTCTCCCACTGAGATAAGTAAATCTCGCCACGGATCAAAACGACAATGCCATAATTTGCGGCGCAACCGCTCAAGACAACCgtg                                                                           <  2:686090/93‑1 (MQ=255)

               tcgatAACGTCTCCCACTGAGATAAGTAAATCTCGCCACGGATCAAAACGACAATGCCATAATTTGCGGCGCAACCGCTCAAGACAACCgtgt                                                                          >  1:1130694/1‑93 (MQ=255)

               tcgatAACGTCTCCCACTGAGATAAGTAAATCTCGCCACGGATCAAAACGACAATGCCATAATTTGCGGCGCAACCGCTCAAGACAACCgtgt                                                                          <  1:3458465/93‑1 (MQ=255)

               tcgatAACGTCTCCCACTGAGATAAGTAAATCTCGCCACGGATCAAAACGACAATG‑CATAATTTGCGGCGCAACCGCTCAAGACAACCGTGta                                                                         >  1:159497/1‑93 (MQ=255)

                cgatAACGTCTCCCACTGAGATAAGTAAATCTCGCCACGGATCAAAACGACAATGCCATAATTTGCGGCGCAACCGCTCAAGTGCACCGTGta                                                                         >  2:65517/1‑93 (MQ=255)

                cgatAACGTCTCCCACTGAGATAAGTAAATCTCGCCACGGATCAAAACGACAATGCCATAATTTGCGGCGCAACCGCTCAAGACAACCGTGta                                                                         <  2:6180295/93‑1 (MQ=255)

                cgatAACGTCTCCCACTGAGATAAGTAAATCTCGCCACGGATCAAAACGACAATGCCATAATTTGCGGCGCAACCGCTCAAGACAACCGTGta                                                                         <  2:6354668/93‑1 (MQ=255)

                cgatAACGTCTCCCACTGAGATAAGTAAATCTCGCCACGGATCAAAACGACAATGCCATAATTTGCGGCGCAACCGCTCAAGACAACCGTGta                                                                         <  2:6671857/93‑1 (MQ=255)

                 gatAACGTCTCCCACTGAGATAAGTAAATCTCGCCACGGATCAAAACGACAATGCCATAATTTGCGGCGCAACCGCTCAAGACAACCGTGtat                                                                        >  2:4275027/1‑93 (MQ=255)

                  atAACGTCTCCCACTGAGATAAGTAAATCTCGCCACGGATCAAAACGACAATGCCATAATTTGCGGCGCAACCGCTCAAGACAACCGTGtata                                                                       <  2:5185053/93‑1 (MQ=255)

                   tAACGTCTCCCACTGAGATAAGTAAATCTCGCCACGGATCAAAACGACAATGCCATAATTTGCGGCGCAACCGCTCAAGACAACCGTGTatat                                                                      >  1:2053968/1‑93 (MQ=255)

                   tAACGTCTCCCACTGAGATAAGTAAATCTCGCCACGGATCAAAACGACAATGCCATAATTTGCGGCGCAACCGCTCAAGACAACCGTGTatat                                                                      >  2:5341642/1‑93 (MQ=255)

                   tAACGTCTCCCACTGAGATAAGTAAATCTCGCCACGGATCAAAACGACAATGCCATAATTTGCGGCGCAACCGCTCAAGACAACCGTGTatat                                                                      <  1:5934533/93‑1 (MQ=255)

                   tAACGTCTCCCACTGAGATAAGTAAATCTCGCCACGGATCAAAACGACAATGCCATAATTTGCGGCGCAACCGCTCAAGACAACCGTGTatat                                                                      <  1:2557998/93‑1 (MQ=255)

                   tAACGTCTCCCACTGAGATAAGTAAATCTCGCCACGGATCAAAACGACAATGCCATAATTTGCGGCGCAACCGCTCAAGACAACCGTGTatat                                                                      <  1:5106644/93‑1 (MQ=255)

                     aCGTCTCCCACTGAGATAAGTAAATCTCGCCACGGATCAAAACGACAATGCCATAATTTGCGGCGCAACCGCTCAAGACAACCGTGTATATCg                                                                    >  2:7672989/1‑93 (MQ=255)

                      cGTCTCCCACTGAGATAAGTAAATCTCGCCACGGATCAAAACGACAATGCCATAATTTGCGGCGCAACCGCTCAAGACAACCGTGTATATCGc                                                                   <  2:4774463/93‑1 (MQ=255)

                      cGTCTCCCACTGAGATAAGTAAATCTCGCCACGGATCAAAACGACAATGCCATAATTTGCGGCGCAACCGCTCAAGACAACCGTGTATATCGc                                                                   <  2:7754186/93‑1 (MQ=255)

                      cGTCTCCCACTGAGATAAGTAAATCTCGCCACGGATCAAAACGACAATGCCATAATTTGCGGCGCAACCGCTCAAGACAACCGTGTATATCGc                                                                   <  2:4213850/93‑1 (MQ=255)

                       gTCTCCCACTGAGATAAGTAAATCTCGGCACGGATCAAAACGACCATGCCATAATTTGTGGCGCAACCGCTCAAGACAACCGTGTATATCGcc                                                                  >  2:5444412/1‑93 (MQ=255)

                       gTCTCCCACTGAGATAAGTAAATCTCGCCACGGATCAAAACGACAATGCCATAATTTGCGGCGCAACCGCTCAAGACAACCGTGTATATCGca                                                                  >  1:6873758/1‑92 (MQ=255)

                           cccACTGAGATAAGTAAATCTCGCCACGGATCAAAACGACAATGCCATAATTTGCGGCGCAACCGCTCAAGACAACCGTGTATATCGCCAGaa                                                              <  2:6123608/93‑1 (MQ=255)

                            ccACTGAGATAAGTAAATCTCGCCACGGATCAAAACGACAATGCCATAATTTGCGGCGCAACCGCTCAAGACAACCGTGTATATCGCCAGaaa                                                             <  1:277612/93‑1 (MQ=255)

                              aCTGAGATAAGTAAATCTCGCCACGGATCAAAACGACAATGCCATAATTTGCGGCGCAACCGCTCAAGACAACCGTGTATATCGCCAGAAAGc                                                           >  1:4819020/1‑93 (MQ=255)

                               cTGAGATAAGTAAATCTCGCCACGGATCAAAACGACAATGCCATAATTTGCGGCGCAACCGCTCAAGACAACCGTGTATATCGCCAGAAAGcc                                                          <  2:5497295/93‑1 (MQ=255)

                                tGAGATAAGTAAATCTCGCCACGGATCAAAACGACAATGCCATAATTTGCGGCGCAACCGCTCAAGACAACCGTGTATATCGCCAGAAAGCCa                                                         <  2:561754/93‑1 (MQ=255)

                                tGAGATAAGTAAATCTCGCCACGGATCAAAACGACAATGCCATAATTTGCGGCGCAACCGCTCAAGACAACCGTGTATATCGCCAGAAAGCCa                                                         >  2:3060947/1‑93 (MQ=255)

                                tGAGATAAGTAAATCTCGCCACGGATCAAAACGACAATGCCATAATTTGCGGCGCAACCGCTCAAGACAACCGTGTATATCGCCAGAAAGCCa                                                         >  1:6213949/1‑93 (MQ=255)

                                tGAGATAAGTAAATCTCGCCACGGATCAAAACGACAATGCCATAATTTGCGGCGCAACCGCTCAAGACAACCGTGTATATCGCCAGAAAGCCa                                                         >  1:3612090/1‑93 (MQ=255)

                                 gagaTAAGTAAATTTCGCCACGGATCAAAACGACAATGCCATAATTTGCGGCGCAACCGCTCAAGACAACCGTGTATATCGCCAGAAAGCCAg                                                        >  2:3483179/1‑93 (MQ=255)

                                   gaTAAGTAAATCTCGCCACGGATCAAAACGACAATGCCATAATTTGCGGCGCAACCGCTCAAGACAACCGTGTATATCGCCAGAAAGCCAGat                                                      <  2:1052708/93‑1 (MQ=255)

                                    aTAAGTAAATCTCGCCACGGATCAAAACGACAATGCCATAATTTTCGGCGCAACCGCTCAAGACAACCGTGTATATCGCCAGAAAGCCAGata                                                     <  2:2425608/93‑1 (MQ=255)

                                    aTAAGTAAATCTCGCCACGGATCAAAACGACAATGCCATAATTTGCGGCGCAACCGCTCAAGACAACCGTGTATATCGCCAGAAAGCCAGata                                                     <  2:1545236/93‑1 (MQ=255)

                                      aaGTATATCTCGCCGCGGATCAAAACGATAATGCCATAATTTGCGGCGCAACCGCTCAAGACAACCGTGTATATCGCCAGAAAGCCAGATATg                                                   <  2:7479829/93‑1 (MQ=255)

                                      aaGTAAATCTCGCCACGGATCAAAACGACAATGCCATAATTTGCGGCGCAACCGCTCAAGACAACCGTGTATATCGCCAGAAAGCCAGATATg                                                   >  1:7625858/1‑93 (MQ=255)

                                        gTAAATCTCGCCACGGATCAAAACGACAATGCCATAATTTGCGGCGCAACCGCTCAAGACAACCGTGTATATCGCCAGAAAGCCAGATATGTc                                                 >  1:3827135/1‑93 (MQ=255)

                                        gTAAATCTCGCCACGGATCAAAACGACAATGCCATAATTTGCGGCGCAACCGCTCAAGACAACCGTGTATATCGCCAGAAAGCCAGATATGTc                                                 >  1:2817078/1‑93 (MQ=255)

                                          aaaTCTCGCCACGGATCAAAACGACAATGCCATAATTTGCGGCGCAACCGCTCAAGACAACCGTGTATATCGCCAGAAAGCCAGATATGTCGc                                               >  2:3780180/1‑93 (MQ=255)

                                               tcGCCACGGATCAAAACGACAATGCCATAATTTGCGGCGCAACCGCTCAAGACAACCGTGTATATCGCCAGAAAGCCAGATATGTCGCCATtg                                          >  1:7181729/1‑93 (MQ=255)

                                               tcGCCACGGATCAAAACGACAATGCCATAATTTGCGGCGCAACCGCTCAAGACAACCGTGTATATCGCCAGAAAGCCAGATATGTCGCCATtg                                          <  2:7200596/93‑1 (MQ=255)

                                               tcGCCACGGATCAAAACGACAATGCCATAATTTGCGGCGCAACCGCTCAAGACAACCGTGTATATCGCCAGAAAGCCAGATATGTCGCCATtg                                          >  2:7318310/1‑93 (MQ=255)

                                                cGCCACGGATCAAAACGACACTGCCATAATTTGCGGCGCAACCGCTCAAGACAACCGTGTATATCGCCAGAAAGCCAGATATGTCGCCATtga                                         <  1:7824758/93‑1 (MQ=255)

                                                 gCCACGGATCAAAACGACAATGCCATAATTTGCGGCGCAACCGCTCAAGACAACCGTGTATATCGCCAGAAAGCCAGATATGTCGCCATtgat                                        <  2:448885/93‑1 (MQ=255)

                                                     cGGATCAAAACGACAATGCCATAATTTGCGGCGCAACCGCTCAAGACAACCGTGTATATCGCCAGAAAGCCAGATATGTCGCCATTGATGAcc                                    <  2:4816833/93‑1 (MQ=255)

                                                       gATCAAAACGACAATGCCATAATTTGCGGCGCAACCGCTCAAGACAACCGTGTATATCGCCAGAAAGCCAGATATGTCGCCATTGATGACCCg                                  <  2:2012011/93‑1 (MQ=255)

                                                        aTCAAAACGACAATGCCATAATTTGCGGCGCAACCGCTCAAGACAACCGTGTATATCGCCAGAAAGCCAGATATGTCGCCATTGATGACCCGc                                 <  2:1522534/93‑1 (MQ=255)

                                                         tCAAAACGACAATGCCATAATTTGCGGCGCAACCGCTCAAGACAACCGTGTATATCGCCAGAAAGCCAGATATGTCGCCATTGATGACCCGCa                                >  1:864951/1‑93 (MQ=255)

                                                          cAAAACGACAATGCCATAATTTGCGGCGCAACCGCTCAAGACAACCGTGTATATCGCCAGAAAGCCAGATATGTCGCCATTGATGACCCGCaa                               <  1:1392796/93‑1 (MQ=255)

                                                            aaaCGACAATGCCATAATTTGCGGCGCAACCGCTCAAGACAACCGTGTATATCGCCAGAAAGCCAGATATGTCGCCATTGATGACCCGCAAtt                             <  2:2106498/93‑1 (MQ=255)

                                                             aaCGACAATGCCATAATTTGCGGCGCAACCGCTCAAGACAACCGTGTATATCGCCAGAAAGCCAGATATGTCGCCATTGATGACCCGCAATtc                            <  2:4668557/93‑1 (MQ=255)

                                                              aCGACAATGCCATAATTTGCGGCGCAACCGCTCAAGACAACCGTGTATATCGCCAGAAAGCCAGATATGTCGCCATTGATGACCCGCAATtct                           >  1:1991553/1‑93 (MQ=255)

                                                              aCGACAATGCCATAATTTGCGGCGCAACCGCTCAAGACAACCGTGTATATCGCCAGAAAGCCAGATATGTCGCCATTGATGACCCGCAATtct                           <  2:4946294/93‑1 (MQ=255)

                                                               cGACAATGCGATAATTTGCGGCGCAACCGCTCAAGACAACCGTGTATATCGCCAGAAAGCCAGATATGTCGCCATTGATGACCCGCAATtctc                          <  1:3284104/93‑1 (MQ=255)

                                                               cGACAATGCCATAATTTGCGGCGCAACCGCTCAAGACAACCGTGTATATCGCCAGAAAGCCAGATATGTCGCCATTGATGACCCGCACTtctc                          >  1:4068567/1‑93 (MQ=255)

                                                                gACAATGCCATAATTTGCGGCGCAACCGCTCAAGACAACCGTGTATATCGCCAGAAAGCCAGATATGTCGCCATTGATGACCCGCAATTctct                         <  2:6633206/93‑1 (MQ=255)

                                                                  ccaTGCCATAATTTGCGGCCCAACCACTCAAGACAACCGTGTATATCGCCAGAAAGCCAGATATGTCGCCATGGATGACCCGCAATTCTCTGa                       <  1:6090153/91‑1 (MQ=255)

                                                                  cAATGCCATAATTTGCGGCGCAACCGCTCAAGACAACCGTGTATATCGCCAGAAAGCCAGATATGTCGCCATTGATGACCCGCAATTCTCTGa                       <  1:5863562/93‑1 (MQ=255)

                                                                   aaTGCCATAATTTGCGGCGCAACCGCTCAAGACAACCGTGTATATCGCCAGAAAGCCAGATATGTCGCCATTGATGACCCGCAATTCTCTGAt                      <  2:3150587/93‑1 (MQ=255)

                                                                    aTGCCATAATTTGCGGCGCAACCGCTCAAGACAACCGTGTATATCGCCAGAAAGCCAGATATGTCGCCATTGATGACCCGCAATTCTCTGATa                     >  1:4917164/1‑93 (MQ=255)

                                                                     tGCCATAATTTGCGGCGCAACCGCTCAAGACAACCGTGTATATCGCCAGAAAGCCAGATATGTCGCCATTGATGACCCGCAATTCTCTGATaa                    <  1:5311513/93‑1 (MQ=255)

                                                                      gCCATAATTTGCGGCGCAACCGCTCAAGACAACCGTGTATATCGCCAGAAAGCCAGATATGTCGCCATTGATGACCCGCAATTCTCTGATaaa                   <  1:6775821/93‑1 (MQ=255)

                                                                      gCCATAATTTGCGGCGCAACCGCTCAAGACAACCGTGTATATCGCCAGAAAGCCAGATATGTCGCCATTGATGACCCGCAATTCTCTGATaaa                   >  1:7053943/1‑93 (MQ=255)

                                                                      gCCATAATTTGCGGCGCAACCGCTCAAGACAACCGTGTATATCGCCAGAAAGCCAGATATGTCGCCATTGATGACCCGCAATTCTCTGATaaa                   <  1:568306/93‑1 (MQ=255)

                                                                      gCCATAATTTGCGGCGCAACCGCTCAAGACAACCGTGTATATCGCCAGAAAGCCAGATATGTCGCCATTGATGACCCGCAATTCTCTGATaaa                   <  2:2892443/93‑1 (MQ=255)

                                                                       ccATAATTTGCGGCGCAACCGCTCAAGACAACCGTGTATATCGCCAGAAAGCCAGATATGTCGCCATTGATGACCCGCAATTCTCTGATAAAc                  <  1:1047089/93‑1 (MQ=255)

                                                                       ccATAATTTGCGGCGCAACCGCTCAAGACAACCGTGTATATCGCCAGAAAGCCAGATATGTCGCCATTGATGACCCGCAATTCTCTGATAAAc                  >  1:3987677/1‑93 (MQ=255)

                                                                       ccAGAATTTGCGGCGCAACCTCTCAAGACAACCGTGTATATCGCCAGAAAGCCAGATATGTCGCCATTGATGACCCGCAATTCTCTGATAAAc                  <  2:5690350/93‑1 (MQ=255)

                                                                        cATAATTTGCGGCGCAACCGCTCAAGACAACCGTGTATATCGCCAGAAAGCCAGATATGTCGCCATTGATGACCCGCAATTCTCTGATAAACg                 <  1:3876502/93‑1 (MQ=255)

                                                                        cATAATTTGCGGCGCAACCGCTCAAGACAACCGTGTATATCGCCAGAAAGCCAGATATGTCGCCATTGATGACCCGCAATTCTCTGATAAACg                 <  2:1674091/93‑1 (MQ=255)

                                                                          tAATTTGCGGCGCAACCGCTCAAGACAACCGTGTATATCGCCAGAAAGCCAGATATGTCGCCATTGATGACCCGCAATTCTCTGATAAACggg               >  1:1673829/1‑93 (MQ=255)

                                                                          tAATTTGCGGCGCAACCGCTCAAGACAACCGTGTATATCGCCAGAAAGCCAGATATGTCGCCATTGATGACCCGCAATTCTCTGATAAACggg               >  1:7533561/1‑93 (MQ=255)

                                                                            aTTTGCGGCGCAACCGCTCAAGACAACCGTGTATATCGCCAGAAAGCCAGATATGTCGCCATTGATGACCCGCAATTCTCTGATAAACGGgcg             >  1:215807/1‑93 (MQ=255)

                                                                             tttGCGGCGCAACCGCTCAAGACAACCGTGTATATCGCCAGAAAGCCAGATATGTCGCCATTGATGACCCGCAATTCTCTGATAAACGGgcgc            <  1:1719498/93‑1 (MQ=255)

                                                                              ttGCGGCGCAACCGCTCAAGACAACCGTGTATATCGCCAGAAAGCCAGATATGTCGCCATTGATGACCCGCAATTCTCTGATAAACGGGCGCa           <  1:7239607/93‑1 (MQ=255)

                                                                               tGCGGCGCAACCGCTCAAGACAACCGTGTATATCGCCAGAAAGCCAGATATGTCGCCATTGATGACCCGCAATTCTCTGATAAACGGGCGCAg          >  1:1434566/1‑93 (MQ=255)

                                                                               tGCGGCGCAACCGCTCAAGACAACCGTGTATATCGCCAGAAAGCCAGATATGTCGCCATTGATGACCCGCAATTCTCTGATAAACGGGCGCAg          <  2:7089164/93‑1 (MQ=255)

                                                                                gcggcgCAACCGCTCAAGACAACCGTGTATATCGCCAGAAAGCCAGATATGTCGCCATTGATGACCCGCAATTCTCTGATAAACGGGCGCAgg         >  1:3031954/1‑93 (MQ=255)

                                                                                 cggcgCAACCGCTCAAGACAACCGTGTATATCGCCAGAAAGCCAGATATGTCGCCATTGATGACCCGCAATTCTCTGATAAACGGGCGCAGGc        <  1:6858796/93‑1 (MQ=255)

                                                                                 cggcgCAACCGCTCAAGACAACCGTGTATATCGCCAGAAAGCCAGATATGTCGCCATTGATGACCCGCAATTCTCTGATAAACGGGCGCAGGc        <  2:7575659/93‑1 (MQ=255)

                                                                                  ggcgCAACCGCTCAAGACAACCGTGTATATCGCCAGAAAGCCAGATATGTCGCCATTGATGACCCGCAATTCTCTGATAAACGGGCGCAGGCt       <  2:2298228/93‑1 (MQ=255)

                                                                                   gcgcAACCGCTCAAGACAACCGTGTATATCGCCAGAAAGCCAGATATGTCGCCATTGATGACCCGCAATTCTCTGATAAACGGGCGCAGGCTg      <  1:3651242/93‑1 (MQ=255)

                                                                                    cgcAACCGCTCAAGACAACCGTGTATATCGCCAGAAAGCCAGATATGTCGCCATTGATGACCCGCAATTCTCTGATAAACGGGCGCAGGCTGt     <  1:5365433/93‑1 (MQ=255)

                                                                                     gcAACCGCTCAAGACAACCGTGTATATCGCCAGAAAGCCAGATATGTCGCCATTGATGACCCGCAATTCTCTGATAAACGGGCGCAGGCTGtt    <  1:2246476/93‑1 (MQ=255)

                                                                                      cAACCGCTCAAGACAACCGTGTATATCGCCAGAAAGCCAGATATGTCGCCATTGATGACCCGCAATTCTCTGATAAACGGGCGCAGGCTGttt   <  2:3247493/93‑1 (MQ=255)

                                                                                      cAACCGCTCAAGACAACCGTGTATATCGCCAGAAAGCCAGATATGTCGCCATTGATGACCCGCAATTCTCTGATAAACGGGCGCAGGCTGttt   >  1:1542143/1‑93 (MQ=255)

                                                                                       aaCCGCTCAAGACAACCGTGTATATCGCCAGAAAGCCAGATATGTCGCCATTGATGACCCGCAATTCTCTGATAAACGGGCGCAGGCTGTTtc  >  1:6005069/1‑93 (MQ=255)

CTTTGCGGCCCACGATCGATAACGTCTCCCACTGAGATAAGTAAATCTCGCCACGGATCAAAACGACAATGCCATAATTTGCGGCGCAACTGCTCAAGACAACCGTGTATATCGCCAGAAAGCCAGATATGTCGCCATTGATGACCCGCAATTCTCTGATAAACGGGCGCAGGCTGTTTC  >  NC_000913/1920812‑1920991

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 20 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

AAACTTTGCGGCCCACGATCGATAACGTCTCCCACTGAGATAAGTAAATCTCGCCACGGATCAAAACGACAATGCCATAATTTGCGGCGCAACTGCTCAAGACAACCGTGTATATCGCCAGAAAGCCAGATATGTCGCCATTGATGACCCGCAATTCTCTGATAAACGGGCGCAGGCTGTTTCATCA  >  NC_000913/1920809‑1920995

AAACTTTGCGGCCCACGATCGATAACGTCTCCCACTGAGATAAGTAAATCTCGCCACGGATCAAAACGACAATGCCATAATTTGCGGCGCAACC                                                                                               <  SRR4302543.5869073/94‑1 (MQ=60)

AAACTTTGCGGCCCACGATCGATAACGTCTCCCACTGAGATAAGTAAATCTCGCCACGGATCAAAACGACAATGCCATAATTTGCGGCGCAACC                                                                                               >  SRR4302543.3639349/1‑94 (MQ=60)

 AACTTTGCGGCCCACGATCGATAACGTCTCCCACTGAGATAAGTAAATCTCGCCACGGATCAAAACGACAATGCCATAATTTGCGGCGCAACCG                                                                                              <  SRR4302543.3543043/94‑1 (MQ=60)

  ACTTTGCGGCCCACGATCGATAACGTCTCCCACTGAGATAAGTAAATCTCGCCACGGATCAAAACGACAATGCCATAATTTGCGGCGCAACCGC                                                                                             >  SRR4302543.1902331/1‑94 (MQ=60)

    TTTGCGGCCCACGATCGATAACGTCTCCCACTGAGATAAGTAAATCTCGCCACGGATCAAAACGACAATGCCATAATTTGCGGCGCAACCGCTC                                                                                           <  SRR4302543.1624400/94‑1 (MQ=60)

       GCGGCCCACGATCGATAACGTCTCCCACTGAGATAAGTAAATCTCGCCACGGATCAAAACGACAATGCCATAATTTGCGGCGCAACCGCTCAAG                                                                                        <  SRR4302543.2040810/94‑1 (MQ=60)

       GCGGCCCACGATCGATAACGTCTCCCACTGAGATAAGTAAATCTCGCCACGGATCAAAACGACAATGCCATAATTTGCGGCGCAACCGCTCAAG                                                                                        <  SRR4302543.5057471/94‑1 (MQ=60)

         GGCCCACGATCGATAACGTCTCCCACTGAGATAAGTAAATCTCGCCACGGATCAAAACGACAATGCCATAATTTGCGGCGCAACCGCTCAAGAC                                                                                      <  SRR4302543.231099/94‑1 (MQ=60)

            CCACGATCGATAACGTCTCCCACTGAGATAAGTAAATCTCGCCACGGATCAAAACGACAATGCCATAATTTGCGGCGCAACCGCTCAAGACAAC                                                                                   >  SRR4302543.4408376/1‑94 (MQ=60)

            CCACGATCGATAACGTCTCCCACTGAGATAAGTAAATCTCGCCACGGATCAAAACGACAATGCCATAATTTGCGGCGCAACCGCTCAAGACAAC                                                                                   >  SRR4302543.7495120/1‑94 (MQ=60)

            CCACGATCGATAACGTCTCCCACTGAGATAAGTAAATCTCGCCACGGATCAAAACGACAATGCCATAATTTGCGGCGCAACCGCTCAAGACAAC                                                                                   >  SRR4302543.1441068/1‑94 (MQ=60)

            CCACGATCGATAACGTCTCCCACTGAGATAAGTAAATCTCGCCACGGATCAAAACGACAATGCCATAATTTGCGGCGCAACCGCTCAAGACAAC                                                                                   >  SRR4302543.6374649/1‑94 (MQ=60)

             CACGATCGATAACGTCTCCCACTGAGATAAGTAAATCTCGCCACGGATCAAAACGACAATGCGATAATTTGCGGCGCAACCGCTCAAGACAACC                                                                                  >  SRR4302543.566010/1‑94 (MQ=60)

             CACGATCGATAACGTCTCCCACTGAGATAAGTAAATCTCGCCACGGATCAAAACGACAATGCCATAATTTGCGGCGCAACCGCTCAAGACAACC                                                                                  <  SRR4302543.6105687/94‑1 (MQ=60)

             CACGATCGATAACGTCTCCCACTGAGATAAGTAAATCTCGCCACGGATCAAAACGACAATGCCATAATTTGCGGCGCAACCGCTCAAGACAACC                                                                                  >  SRR4302543.2683726/1‑94 (MQ=60)

             CACGATCGATAACGTCTCCCACTGAGATAAGTAAATCTCGCCACGGATCAAAACGACAATGCCATAATTTGCGGCGCAACCGCTCAAGACAACC                                                                                  <  SRR4302543.3289807/94‑1 (MQ=60)

             CACGATCGATAACGTCTCCCACTGAGATAAGTAAATCTCGCCACGGATCAAAACGACAATGCCATAATTTGCGGCGCAACCGCTCAAGACAACC                                                                                  >  SRR4302543.6573946/1‑94 (MQ=60)

             CACGATCGATAACGTCTCCCACTGAGATAAGTAAATCTCGCCACGGATCAAAACGACAATGCCATAATTTGCGGCGCAACCGCTCAAGACAACC                                                                                  <  SRR4302543.5284470/94‑1 (MQ=60)

               CGATCGATAACGTCTCCCACTGAGATAAGTAAATCTCGCCACGGATCAAAACGACAATGCCATAATTTGCGGCGCAACCGCTCAAGACAACCGT                                                                                >  SRR4302543.4933415/1‑94 (MQ=60)

                GATCGATAACGTCTCCCACTGAGATAAGTAAATCTCGCCACGGATCAAAACGACAATGCCATAATTTGCGGCGCAACCGCTCAAGACAACCGTG                                                                               <  SRR4302543.4334175/94‑1 (MQ=60)

                GATCGATAACGTCTCCCACTGAGATAAGTAAATCTCGCCACGGATCAAAACGACAATGCCATAATTTGCGGCGCAACCGCTCAAGACAACCGTG                                                                               >  SRR4302543.1160829/1‑94 (MQ=60)

                GATCGATAACGTCTCCCACTGAGATAAGTAAATCTCGCCACGGATCAAAACGACAATGCCATAATTTGCGGCGCAACCGCTCAAGACAACCGTG                                                                               >  SRR4302543.5581486/1‑94 (MQ=60)

                 ATCGATAACGTCTCCCACTGAGATCAGTCAATCTCGCCACGGATCAAAACGACAATGCCATAATTTGCGGCGCAACCGCTCAAGACAACCGTGT                                                                              <  SRR4302543.7112621/94‑1 (MQ=60)

                 ATCGATAACGTCTCCCACTGAGATAAGTAAATCTCGCCACGGATCAAAACGACAATGCCATAATTTGCGGCGCAACCGCTCAAGACAACCGTGT                                                                              >  SRR4302543.1140958/1‑94 (MQ=60)

                 ATCGATAACGTCTCCCACTGAGATAAGTAAATCTCGCCACGGATCAAAACGACAATG‑CATAATTTGCGGCGCAACCGCTCAAGACAACCGTGTA                                                                             >  SRR4302543.160864/1‑94 (MQ=60)

                  TCGATAACGTCTCCCACTGAGATAAGTAAATCTCGCCACGGATCAAAACGACAATGCCATAATTTGCGGCGCAACCGCTCAAGACAACCGTGTA                                                                             >  SRR4302543.7290340/1‑94 (MQ=60)

                  TCGATAACGTCTCCCACTGAGATAAGTAAATCTCGCCACGGATCAAAACGACAATGCCATAATTTGCGGCGCAACCGCTCAAGACAACCGTGTA                                                                             <  SRR4302543.3489445/94‑1 (MQ=60)

                   CGATAACGTCTCCCACTGAGATAAGTAAATCTCGCCACGGATCAAAACGACAATGCCATAATTTGCGGCGCAACCGCTCAAGACAACCGTGTAT                                                                            >  SRR4302543.5997787/1‑94 (MQ=60)

                   CGATAACGTCTCCCACTGAGATAAGTAAATCTCGCCACGGATCAAAACGACAATGCCATAATTTGCGGCGCAACCGCTCAAGACAACCGTGTAT                                                                            <  SRR4302543.3968287/94‑1 (MQ=60)

                   CGATAACGTCTCCCACTGAGATAAGTAAATCTCGCCACGGATCAAAACGACAATGCCATAATTTGCGGCGCAACCGCTCAAGACAACCGTGTAT                                                                            <  SRR4302543.3968286/94‑1 (MQ=60)

                   CGATAACGTCTCCCACTGAGATAAGTAAATCTCGCCACGGATCAAAACGACAATGCCATAATTTGCGGCGCAACCGCTCAAGACAACCGTGTAT                                                                            >  SRR4302543.1518254/1‑94 (MQ=60)

                   CGATAACGTCTCCCACTGAGATAAGTAAATCTCGCCACGGATCAAAACGACAATGCCATAATTTGCGGCGCAACCGCTCAAGACAACCGTGTAT                                                                            <  SRR4302543.5767448/94‑1 (MQ=60)

                    GATAACGTCTCCCACTGAGATAAGTAAATCTCGCCACGGATCAAAACGACAATGCCATAATTTGCGGCGCAACCGCTCAAGACAACCGTGTATA                                                                           >  SRR4302543.6929010/1‑94 (MQ=60)

                     ATAACGTCTCCCACTGAGATAAGTAAATCTCGCCACGGATCAAAACGACAATGCCATAATTTGCGGCGCAACCGCTCAAGACAACCGTGTATAT                                                                          >  SRR4302543.1603464/1‑94 (MQ=60)

                     ATAACGTCTCCCACTGAGATAAGTAAATCTCGCCACGGATCAAAACGACAATGCCATAATTTGCGGCGCAACCGCTCAAGACAACCGTGTATAT                                                                          <  SRR4302543.2807740/94‑1 (MQ=60)

                     ATAACGTCTCCCACTGAGATAAGTAAATCTCGCCACGGATCAAAACGACAATGCCATAATTTGCGGCGCAACCGCTCAAGACAACCGTGTATAT                                                                          >  SRR4302543.2072354/1‑94 (MQ=60)

                     ATAACGTATCCCACTGAGATAAGTAAACATCACCACGGATCAATACGACAATGCCATAATTTGCAGCGCAACCGCTCAAGACAACCGTGTATAT                                                                          <  SRR4302543.2807967/94‑1 (MQ=60)

                      TAACGTCTCCCACTGAGATAAGTAAATCTCGCCACGGATCAAAACGACAATGCCATAATTTGCGGCGCAACCGCTCAAGACAACCGTGTATATC                                                                         <  SRR4302543.2581378/94‑1 (MQ=60)

                      TAACGTCTCCCACTGAGATAAGTAAATCTCGCCACGGATCAAAACGACAATGCCATAATTTGCGGCGCAACCGCTCAAGACAACCGTGTATATC                                                                         <  SRR4302543.5152855/94‑1 (MQ=60)

                      TAACGTCTCCCACTGAGATAAGTAAATCTCGCCACGGATCAAAACGACAATGCCATAATTTGCGGCGCAACCGCTCAAGACAACCGTGTATATC                                                                         <  SRR4302543.5988812/94‑1 (MQ=60)

                       AACGTCTCCCACTGAGATAAGTAAATCTCGCCACGGATCAAAACGACAATGCCATAATTTGCGGCGCAACCGCTCAAGACAACCGTGTATATCG                                                                        <  SRR4302543.1792220/94‑1 (MQ=60)

                       AACGTCTCCCACTGAGATAAGTAAATCTCGCCACGGATCAAAACGACAATGCCATAATTTGCGGCGCAACCGCTCAAGACAACCGTGTATATCG                                                                        <  SRR4302543.5069552/94‑1 (MQ=60)

                         CGTCTCCCACTGAGATAAGTAAATCTCGCCACGGATCAAAACGACAATGCCATAATTTGCGGCGCAACCGCTCAAGACAACCGTGTATATCGCC                                                                      >  SRR4302543.1133110/1‑94 (MQ=60)

                         CGTCTCCCACTGAGATAAGTAAATCTCGCCACGGATCAAAACGACAATGCCATAATTTGCGGCGCAACCGCTCAAGACAACCGTGTATATCGCA                                                                      >  SRR4302543.6938480/1‑94 (MQ=60)

                          GTCTCCCACTGAGATAAGTAAATCTCGCCACGGATCAAAACGACAATGCCATAATTTGCGGCGCAACCGCTCAAGACAACCGTGTATATCGCCA                                                                     >  SRR4302543.6835070/1‑94 (MQ=60)

                              CCCACTGAGATAAGTAAATCTCGCCACGGATCAAAACGACAATGCCATAATTTGCGGCGCAACCGCTCAAGACAACCGTGTATATCGCCAGAAA                                                                 <  SRR4302543.7992817/94‑1 (MQ=60)

                               CCACTGAGATAAGTAAATCTCGCCACGGATCAAAACGACAATGCCATAATTTGCGGCGCAACCGCTCAAGACAACCGTGTATATCGCCAGAAAG                                                                <  SRR4302543.6215556/94‑1 (MQ=60)

                               CCACTGAGATAAGTAAATCTCGCCACGGATCAAAACGACAATGCCATAATTTGCGGCGCAACCGCTCAAGACAACCGTGTATATCGCCAGAAAG                                                                <  SRR4302543.5890064/94‑1 (MQ=60)

                               CCACTGAGATAAGTAAATCTCGCCACGGATCAAAACGACAATGCCATAATTTGCGGCGCAACCGCTCAAGACAACCGTGTATATCGCCAGAAAG                                                                <  SRR4302543.5730019/94‑1 (MQ=60)

                               CCACTGAGATAAGTAAATCTCGCCACGGATCAAAACGACAATGCCATAATTTGCGGCGCAACCGCTCAAGACAACCGTGTATATCGCCAGAAAG                                                                <  SRR4302543.280067/94‑1 (MQ=60)

                                CACTGAGATAAGTAAATCTCGCCACGGATCAAAACGACAATGCCATAATTTGCGGCGCAACCGCTCAAGACAACCGTGTATATCGCCAGAAAGC                                                               >  SRR4302543.4863020/1‑94 (MQ=60)

                                 ACTGAGATAAGTAAATCTCGCCACGGATCAAAACGACAATGCCATAATTTGCGGCGCAACCGCTCAAGACAACCGTGTATATCGCCAGAAAGCC                                                              >  SRR4302543.7498730/1‑94 (MQ=60)

                                 ACTGAGATAAGTAAATCTCGCCACGGATCAAAACGACAATGCCATAATTTGCGGCGCAACCGCTCAAGACAACCGTGTATATCGCCAGAAAGCC                                                              >  SRR4302543.1256817/1‑94 (MQ=60)

                                  CTGAGATAAGTAAATCTCGCCACGGATCAAAACGACAATGCCATAATTTGCGGCGCAACCGCTCAAGACAACCGTGTATATCGCCAGAAAGCCA                                                             >  SRR4302543.3643939/1‑94 (MQ=60)

                                  CTGAGATAAGTAAATCTCGCCACGGATCAAAACGACAATGCCATAATTTGCGGCGCAACCGCTCAAGACAACCGTGTATATCGCCAGAAAGCCA                                                             >  SRR4302543.6272614/1‑94 (MQ=60)

                                   TGAGATAAGTAAATCTCGCCACGGATCAAAACGACAATGCCATAATTTGCGGCGCAACCGCTCAAGACAACCGTGTATATCGCCAGAAAGCCAG                                                            <  SRR4302543.3327170/94‑1 (MQ=60)

                                   TGAGATAAGTAAATCTCGCCACGGATCAAAACGACAATGCCATAATTTGCGGCGCAACCGCTCAAGACAACCGTGTATATCGCCAGAAAGCCAG                                                            <  SRR4302543.3510098/94‑1 (MQ=60)

                                     AGATAAGTAAATCTCGCCACGGATCAAAACGACAATGCCATAATTTGCGGCGCAACCGCTCAAGACAACCGTGTATATCGCCAGAAAGCCAGAT                                                          <  SRR4302543.6157888/94‑1 (MQ=60)

                                     AGATAAGTAAATCTCGCCACGGATCAAAACGACAATGCCATAATTTGCGGCGCAACCGCTCAAGACAACCGTGTATATCGCCAGAAAGCCAGAT                                                          <  SRR4302543.2270356/94‑1 (MQ=60)

                                       ATAAGTAAATCTCGCCACGGATCAAAACGACAATGCCATAATTTGCGGCGCAACCGCTCAAGACAACCGTGTATATCGCCAGAAAGCCAGATAT                                                        >  SRR4302543.6287765/1‑94 (MQ=60)

                                       ATAAGTAAATCTCGCCACGGATCAAAACGACAATGCCATAATTTGCGGCGCAACCGCTCAAGACAACCGTGTATATCGCCAGAAAGCCAGATAT                                                        >  SRR4302543.7483310/1‑94 (MQ=60)

                                        TAAGTAAATCTCGCCACGGATCAAAACGACAATGCCATAATTTGCGGCGCAACCGCTCAAGACAACCGTGTATATCGCCAGAAAGCCAGATATG                                                       >  SRR4302543.7698222/1‑94 (MQ=60)

                                          AGTAAATCTCGCCACGGATCAAAACGACAATGCCATAATTTGCGGCGCAACCGCTCAAGACAACCGTGTATATCGCCAGAAAGCCAGATATGTC                                                     >  SRR4302543.3860897/1‑94 (MQ=60)

                                          AGTAAATCTCGCCACGGATCAAAACGACAATGCCATAATTTGCGGCGCAACCGCTCAAGACAACCGTGTATATCGCCAGAAAGCCAGATATGTC                                                     <  SRR4302543.2149845/94‑1 (MQ=60)

                                          AGTAAATCTCGCCACGGATCAAAACGACAATGCCATAATTTGCGGCGCAACCGCTCAAGACAACCGTGTATATCGCCAGAAAGCCAGATATGTC                                                     >  SRR4302543.6020840/1‑94 (MQ=60)

                                          AGTAAATCTCGCCACGGATCAAAACGACAATGCCATAATTTGCGGCGCAACCGCTCAAGACAACCGTGTATATCGCCAGAAAGCCAGATATGTC                                                     >  SRR4302543.2842870/1‑94 (MQ=60)

                                             AAATCTCGCCACGGATCAAAACGACAATGCCATAATTTGCGGCGCAACCGCTCAAGACAACCGTGTATATCGCCAGAAAGCCAGATATGTCGCC                                                  >  SRR4302543.3677493/1‑94 (MQ=60)

                                              AATCTCGCCACGGATCAAAACGACAATGCCATAATTTGCGGCGCAACCGCTCAAGACAACCGTGTATATCGCCAGAAAGCCAGATATGTCGCCA                                                 <  SRR4302543.4080976/94‑1 (MQ=60)

                                              AATCTCGCCACGGATCAAAACGACAATGCCATAATTTGCGGCGCAACCGCTCAAGACAACCGTGTATATCGCCAGAAAGCCAGATATGTCGCCA                                                 >  SRR4302543.4966990/1‑94 (MQ=60)

                                                TCTCGCCACGGATCAAAACGACAATGCCATAATTTGCGGCGCAACCGCTCAAGACAACCGTGTATATCGCCAGAAAGCCAGATATGTCGCCATT                                               <  SRR4302543.7226530/94‑1 (MQ=60)

                                                TCTCGCCACGGATCAAAACGACAATGCCATAATTTGCGGCGCAACCGCTCAAGACAACCGTGTATATCGCCAGAAAGCCAGATATGTCGCCATT                                               <  SRR4302543.3501784/94‑1 (MQ=60)

                                                 CTCGCCACGGATCAAAACGACAATGCCATAATTTGCGGCGCAACCGCTCAAGACAACCGTGTATATCGCCAGAAAGCCAGATATGTCGCCATTG                                              >  SRR4302543.7251425/1‑94 (MQ=60)

                                                  TCGCCACGGATCAGATCGACAATGCCATCATTTGCGGCGCATCCGCTCAAGACAACCGTGAATATCGCCAGAAAGCCAGATATGTCGCCATAGA                                             <  SRR4302543.7095057/94‑1 (MQ=60)

                                                   CGCCACGGATCAAAACGACACTGCCATAATTTGCGGCGCAACCGCTCAAGACAACCGTGTATATCGCCAGAAAGCCAGATATGTCGCCATTGAT                                            <  SRR4302543.7898459/94‑1 (MQ=60)

                                                   CGCCACGGATCAAAACGACAATGCCATAATTTGCGGCGCAACCGCTCAAGACAACCGTGTATATCGCCAGAAAGCCAGATATGTCGCCATTGAT                                            <  SRR4302543.4645016/94‑1 (MQ=60)

                                                    NCNACGGNTCAAAACGANAATNCNATAATTTGCGGCGCAACCGCTCAAGACAACCGTGTATATCGCCAGAAAGCCAGATATGTCGCCATTGATG                                           <  SRR4302543.6681555/94‑1 (MQ=60)

                                                    GCCACGGATCAAAACGACAATGCCATAATTTGCGGCGCAACCGCTCAAGACAACCGTGTATATCGCCAGAAAGCCAGATATGTCGCCATTGATG                                           <  SRR4302543.4185853/94‑1 (MQ=60)

                                                    CCCACGGATGAAAACGACAATGCCATAATTTGCGGCGCAACCGCTCAAGACAACCGTGTATATCGCCAGAAAGCCAGATATGTCGCCATTGATG                                           <  SRR4302543.1693556/94‑1 (MQ=60)

                                                       ACGGATCAAAACGACAATGCCATAATTTGCGGCGCAACCGCTCAAGACAACCGTGTATATCGCCAGAAAGCCAGATATGTCGCCATTGATGACC                                        >  SRR4302543.1533832/1‑94 (MQ=60)

                                                         GGATCAAAACGACAATGCCATAATTTGCGGCGCAACCGCTCAAGACAACCGTGTATATCGCCAGAAAGCCAGATATGTCGCCATTGATGACCCG                                      <  SRR4302543.7770892/94‑1 (MQ=60)

                                                          GATCAAAACGACAATGCCATAATTTGCGGCGCAACCGCTCAAGACAACCGTGTATATCGCCAGAAAGCCAGATATGTCGCCATTGATGACCCGC                                     <  SRR4302543.181733/94‑1 (MQ=60)

                                                           ATCAAAACGACAATGCCATAATTTGCGGCGCAACCGCTCAAGACAACCGTGTATATCGCCAGAAAGCCAGATATGTCGCCATTGATGACCCGCA                                    >  SRR4302543.872684/1‑94 (MQ=60)

                                                           ATCAAAACGACAATGCCATAATTTGCGGCGCAACCGCTCAAGACAACCGTGTATATCGCCAGAAAGCCAGATATGTCGCCATTGATGACCCGCA                                    >  SRR4302543.872685/1‑94 (MQ=60)

                                                           ATCAAAACGACAATGCCATAATTTGCGGCGCAACCGCTCAAGACAACCGTGTATATCGCCAGAAAGCCAGATATGTCGCCATTGATGACCCGCA                                    >  SRR4302543.2252148/1‑94 (MQ=60)

                                                           ATCAAAACGACAATGCCATAATTTGCGGCGCAACCGCTCAAGACAACCGTGTATATCGCCAGAAAGCCAGATATGTCGCCATTGATGACCCGCA                                    >  SRR4302543.305977/1‑94 (MQ=60)

                                                           ATCAAAACGACAATACCATAATTTGCGGCGCAACCGCTCAAGACAACCGTGTATATCGCCAGAAAGCCAGATATGTCGCCATTGATGACCCGCA                                    >  SRR4302543.3900435/1‑94 (MQ=60)

                                                             CAAAACGACAATGCCATAATTTGCGGCGCAACCGCTCAAGACAACCGTGTATATCGCCAGAAAGCCAGATATGTCGCCATTGATGACCCGCAAT                                  <  SRR4302543.1405338/94‑1 (MQ=60)

                                                             CAAAACGACAATGCCATAATTTGCGGCGCAACCGCTCAAGACAACCGTGTATATCGCCAGAAAGCCAGATATGTCGCCATTGATGACCCGCAAT                                  >  SRR4302543.457980/1‑94 (MQ=60)

                                                              AAAACGACAATGCCATAATTTGCGGCGCAACCGCTCAAGACAACCGTGTATATCGCCAGAAAGCCAGATATGTCGCCATTGATGACCCGCAATT                                 >  SRR4302543.6886286/1‑94 (MQ=60)

                                                                AACGACAATGCCATAATTTGCGGCGCAACCGCTCAAGACAACCGTGTATATCGCCAGAAAGCCAGATATGTCGCCATTGATGACCCGCAATTCT                               <  SRR4302543.2858793/94‑1 (MQ=60)

                                                                AACGACAATGCCATAATTTGCGGCGCAACCGCTCAAGACAACCGTGTATATCGCCAGAAAGCCAGATATGTCGCCATTGATGACCCGCAATTCT                               <  SRR4302543.7343438/94‑1 (MQ=60)

                                                                AACGACAATGCCATAATTTGCGGCGCAACCGCTCAAGACAACCGTGTATATCGCCAGAAAGCCAGATATGTCGCCATTGATGACCCGCAATTCT                               >  SRR4302543.2009409/1‑94 (MQ=60)

                                                                 ACGACAATGCCATAATTTGCGGCGCAACCGCTCAAGACAACCGTGTATATCGCCAGAAAGCCAGATATGTCGCCATTGATGACCCGCACTTCTC                              >  SRR4302543.4105006/1‑94 (MQ=60)

                                                                  CGACAATGCGATAATTTGCGGCGCAACCGCTCAAGACAACCGTGTATATCGCCAGAAAGCCAGATATGTCGCCATTGATGACCCGCAATTCTCT                             <  SRR4302543.3313745/94‑1 (MQ=60)

                                                                  CGACAATGCCATAATTTGCGGCGCAACCGCTCAAGACAACCGTGTATATCGCCAGAAAGCCAGATATGTCGCCATTGATGACCCGCAATTCTCT                             <  SRR4302543.7833274/94‑1 (MQ=60)

                                                                   GACAATGCCATAATTTGCGGCGCAACCGCTCAAGACAACCGTGTATATCGCCAGAAAGCCAGATATGTCGCCATTGATGACCCGCAATTCTCTG                            <  SRR4302543.3708847/94‑1 (MQ=60)

                                                                   GACAATGCCATAATTTGCGGCGCAACCGCTCAAGACAACCGTGTATATCGCCAGAAAGCCAGATATGTCGCCATTGATGACCCGCAATTCTCTG                            >  SRR4302543.70815/1‑94 (MQ=60)

                                                                   GACAATGCCATAATTTGCGGCGCAACCGCTCAAGACAACCGTGTATATCGCCAGAAAGCCAGATATGTCGCCATTGATGACCCGCAATTCTCTG                            <  SRR4302543.7632770/94‑1 (MQ=60)

                                                                     CCATGCCATAATTTGCGGCCCAACCACTCAAGACAACCGTGTATATCGCCAGAAAGCCAGATATGTCGCCATGGATGACCCGCAATTCTCTGAT                          <  SRR4302543.6147875/94‑1 (MQ=60)

                                                                     CAATGCCATAATTTGCGGCGCAACCGCTCAAGACAACCGTGTATATCGCCAGAAAGCCAGATATGTCGCCATTGATGACCCGCAATTCTCTGAT                          <  SRR4302543.5916931/94‑1 (MQ=60)

                                                                     CAATACCATAATTTGCGGCGCAACCGCTCAAGACAACCGTGTATATCGCCAGAAAGCCAGATATGTCGCCATTGATGACCCGCAATTCTCTGAT                          <  SRR4302543.1666394/94‑1 (MQ=60)

                                                                      AATGCCATAATTTGCGGCGCAACCGCTCAAGACAACCGTGTATATCGCCAGAAAGCCAGATATGTCGCCATTGATGACCCGCAATTCTCTGATA                         >  SRR4302543.4961963/1‑94 (MQ=60)

                                                                       ATGCCATAATTTGCGGCGCAACCGCTCAAGACAACCGTGTATATCGCCAGAAAGCCAGATATGTCGCCATTGATGACCCGCAATTCTCTGATAA                        >  SRR4302543.6873166/1‑94 (MQ=60)

                                                                        TGCCATAATTTGCGGCGCAACCGCTCAAGACAACCGTGTATATCGCCAGAAAGCCAGATATGTCGCCATTGATGACCCGCAATTCTCTGATAAA                       >  SRR4302543.7122391/1‑94 (MQ=60)

                                                                        TGCCATAATTTGCGGCGCAACCGCTCAAGACAACCGTGTATATCGCCAGAAAGCCAGATATGTCGCCATTGATGACCCGCAATTCTCTGATAAA                       >  SRR4302543.7122393/1‑94 (MQ=60)

                                                                        TGCCATAATTTGCGGCGCAACCGCTCAAGACAACCGTGTATATCGCCAGAAAGCCAGATATGTCGCCATTGATGACCCGCAATTCTCTGATAAA                       <  SRR4302543.5359490/94‑1 (MQ=60)

                                                                         GCCATAATTTGCGGCGCAACCGCTCAAGACAACCGTGTATATCGCCAGAAAGCCAGATATGTCGCCATTGATGACCCGCAATTCTCTGATAAAC                      <  SRR4302543.3749906/94‑1 (MQ=60)

                                                                         GCCATAATTTGCGGCGCAACCGCTCAAGACAACCGTGTATATCGCCAGAAAGCCAGATATGTCGCCATTGATGACCCGCAATTCTCTGATAAAC                      >  SRR4302543.4023103/1‑94 (MQ=60)

                                                                         GCCATAATTTGCGGCGCAACCGCTCAAGACAACCGTGTATATCGCCAGAAAGCCAGATATGTCGCCATTGATGACCCGCAATTCTCTGATAAAC                      <  SRR4302543.573504/94‑1 (MQ=60)

                                                                         GCCATAATTTGCGGCGCAACCGCTCAAGACAACCGTGTATATCGCCAGAAAGCCAGATATGTCGCCATTGATGACCCGCAATTCTCTGATAAAC                      <  SRR4302543.6839825/94‑1 (MQ=60)

                                                                          CCATAATTTGCGGCGCAACCGCTCAAGACAACCGTGTATATCGCCAGAAAGCCAGATATGTCGCCATTGATGACCCGCAATTCTCTGATAAACG                     <  SRR4302543.1056465/94‑1 (MQ=60)

                                                                           CATAATTTGCGGCGCAACCGCTCAAGACAACCGTGTATATCGCCAGAAAGCCAGATATGTCGCCATTGATGACCCGCAATTCTCTGATAAACGG                    <  SRR4302543.3910729/94‑1 (MQ=60)

                                                                            ATAATTTGCGGCGCAACCGCTCAAGACAACCGTGTATATCGCCAGAAAGCCAGATATGTCGCCATTGATGACCCGCAATTCTCTGATAAACGGG                   >  SRR4302543.7605396/1‑94 (MQ=60)

                                                                            ATAATTTGCGGCGCAACCGCTCAAGACAACCGTGTATATCGCCAGAAAGCCAGATATGTCGCCATTGATGACCCGCAATTCTCTGATAAACGGG                   >  SRR4302543.193893/1‑94 (MQ=60)

                                                                            ATAATTTGCGGCGCAACCGCTCAAGACAACCGTGTATATCGCCAGAAAGCCAGATATGTCGCCATTGATGACCCGCAATTCTCTGATAAACGGG                   <  SRR4302543.505044/94‑1 (MQ=60)

                                                                            ATAATTTGCGGCGCAACCGCTCAAGACAACCGTGTATATCGCCAGAAAGCCAGATATGTCGCCATTGATGACCCGCAATTCTCTGATAAACGGG                   >  SRR4302543.1688829/1‑94 (MQ=60)

                                                                            ATAATTTGCGGCGCAACCGCTCAAGACAACCGTGTATATCGCCAGAAAGCCAGATATGTCGCCATTGATGACCCGCAATTCTCTGATAAACGGG                   <  SRR4302543.5394447/94‑1 (MQ=60)

                                                                             TAATTTGCGGCGCAACCGCTCAAGACAACCGTGTATATCGCCAGAAAGCCAGATATGTCGCCATTGATGACCCGCAATTCTCTGATAAACGGGC                  <  SRR4302543.7178328/94‑1 (MQ=60)

                                                                              AATTTGCGGCGCAACCGCTCAAGACAACCGTGTATATCGCCAGAAAGCCAGATATGTCGCCATTGATGACCCGCAATTCTCTGATAAACGGGCG                 >  SRR4302543.5194930/1‑94 (MQ=60)

                                                                              AATTTGCGGCGCAACCGCTCAAGACAACCGTGTATATCGCCAGAAAGCCAGATATGTCGCCATTGATGACCCGCAATTCTCTGATAAACGGGCG                 >  SRR4302543.217662/1‑94 (MQ=60)

                                                                               ATTTGCGGCGCAACCGCTCAAGACAACCGTGTATATCGCCAGAAAGCCAGATATGTCGCCATTGATGACCCGCAATTCTCTGATAAACGGGCGC                >  SRR4302543.7624483/1‑94 (MQ=60)

                                                                                TTTGCGGCGCAACCGCTCAAGACAACCGTGTATATCGCCAGAAAGCCAGATATGTCGCCATTGATGACCCGCAATTCTCTGATAAACGGGCGCA               <  SRR4302543.1734848/94‑1 (MQ=60)

                                                                                 TTGCGGCGCAACCGCTCAAGACAACCGTGTATATCGCCAGAAAGCCAGATATGTCGCCATTGATGACCCGCAATTCTCTGATAAACGGGCGCAG              <  SRR4302543.7309686/94‑1 (MQ=60)

                                                                                 TTGCGGCGCAACCGCTCAAGACAACCGTGTATATCGCCAGAAAGCCAGATATGTCGCCATTGATGACCCGCAATTCTCTGATAAACGGGCGCAG              >  SRR4302543.1447532/1‑94 (MQ=60)

                                                                                  TGCGGCGCAACCGCTCAAGACAACCGTGTATATCGCCAGAAAGCCAGATATGTCGCCATTGATGACCCGCAATTCTCTGATAAACGGGCGCAGG             >  SRR4302543.3059331/1‑94 (MQ=60)

                                                                                    CGGCGCAACCGCTCAAGACAACCGTGTATATCGCCAGAAAGCCAGATATGTCGCCATTGATGACCCGCAATTCTCTGATAAACGGGCGCAGGCT           <  SRR4302543.6923451/94‑1 (MQ=60)

                                                                                     GGCGCAACCGCTCAAGACAACCGTGTATATCGCCAGAAAGCCAGATATGTCGCCATTGATGACCCGCAATTCTCTGATAAACGGGCGCAGGCTG          <  SRR4302543.2255611/94‑1 (MQ=60)

                                                                                      GCGCAACCGCTCAAGACAACCGTGTATATCGCCAGAAAGCCAGATATGTCGCCATTGATGACCCGCAATTCTCTGATAAACGGGCGCAGGCTGT         <  SRR4302543.3683325/94‑1 (MQ=60)

                                                                                      GCGCAACCGCTCAAGACAACCGTGTATATCGCCAGAAAGCCAGATATGTCGCCATTGATGACCCGCAATTCTCTGATAAACGGGCGCAGGCTGT         <  SRR4302543.5966653/94‑1 (MQ=60)

                                                                                       CGCAACCGCTCAAGACAACCGTGTATATCGCCAGAAAGCCAGATATGTCGCCATTGATGACCCGCAATTCTCTGATAAACGGGCGCAGGCTGTT        <  SRR4302543.5414002/94‑1 (MQ=60)

                                                                                        GCAACCGCTCAAGACAACCGTGTATATCGCCAGAAAGCCAGATATGTCGCCATTGATGACCCGCAATTCTCTGATAAACGGGCGCAGGCTGTTT       <  SRR4302543.2042438/94‑1 (MQ=60)

                                                                                        GCAACCGCTCAAGACAACCGTGTATATCGCCAGAAAGCCAGATATGTCGCCATTGATGACCCGCAATTCTCTGATAAACGGGCGCAGGCTGTTT       >  SRR4302543.1555956/1‑94 (MQ=60)

                                                                                        GCAACCGCTCAAGACAACCGTGTATATCGCCAGAAAGCCAGATATGTCGCCATTGATGACCCGCAATTCTCTGATAAACGGGCGCAGGCTGTTT       <  SRR4302543.2266866/94‑1 (MQ=60)

                                                                                        GCAACCGCTCAAGACAACCGTGTATATCGCCAGAAAGCCAGATATGTCGCCATTGATGACCCGCAATTCTCTGATAAACGGGCGCAGGCTGTTT       <  SRR4302543.5520820/94‑1 (MQ=60)

                                                                                         CAACCGCTCAAGACAACCGTGTATATCGCCAGAAAGCCAGATATGTCGCCATTGATGACCCGCAATTCTCTGATAAACGGGCGCAGGCTGTTTC      >  SRR4302543.6060310/1‑94 (MQ=60)

                                                                                          AACCGCTCAAGACAACCGTGTATATCGCCAGAAAGCCAGATATGTCGCCATTGATGACCCGCAATTCTCTGATAAACGGGCGCAGGCTGTTTCA     >  SRR4302543.2470184/1‑94 (MQ=60)

                                                                                           ACCGCTCAAGACAACCGTGTATATCGCCAGAAAGCCAGATATGTCGCCATTGATGACCCGCAATTCTCTGATAAACGGGCGCAGGCTGTTTCAT    <  SRR4302543.1865200/94‑1 (MQ=60)

                                                                                            CCGCTCAAGACAACCGTGTATATCGCCAGAAAGCCAGATATGTCGCCATTGATGACCCGCAATTCTCTGATAAACGGGCGCAGGCTGTTTCATC   <  SRR4302543.5773317/94‑1 (MQ=60)

                                                                                             CGCTCAAGACAACCGTGTATATCGCCAGAAAGCCAGATATGTCGCCATTGATGACCCGCAATTCTCTGATAAACGGGCGCAGGCTGTTTCATCA  <  SRR4302543.4263319/94‑1 (MQ=60)

AAACTTTGCGGCCCACGATCGATAACGTCTCCCACTGAGATAAGTAAATCTCGCCACGGATCAAAACGACAATGCCATAATTTGCGGCGCAACTGCTCAAGACAACCGTGTATATCGCCAGAAAGCCAGATATGTCGCCATTGATGACCCGCAATTCTCTGATAAACGGGCGCAGGCTGTTTCATCA  >  NC_000913/1920809‑1920995

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 20 ≤` `ATCG/ATCG` `< 30 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`