Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I1 R1
|
1696 |
279.3 |
15874187 |
97.8% |
15524954 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
1,923,118 |
T→C |
intergenic (‑125/‑14) |
b1841 ← / → holE |
hypothetical protein/DNA polymerase III theta subunit |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 1,923,118 | 0 | T | C | 99.5%
| 665.3
/ NA
| 208 | intergenic (‑125/‑14) | b1841/holE | hypothetical protein/DNA polymerase III theta subunit |
| Reads supporting (aligned to +/- strand): ref base T (1/0); new base C (78/129); total (79/129) |
| Fisher's exact test for biased strand distribution p-value = 3.80e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 218 total aligned reads displayed.
GAGCATAACCTTGTCTAATGTCTGAGTCGAGGATCATCAATTCCGGCTTGCCATCCTGGCTCACTCTTAGTAACTTTTGCCCGCGAATGATGAGGAGATTAAGAATGCTGAAGAATCTGGCTAAACTGGATCAAACAGAAATGGATAAAGTGAATGTCGATTTGGCGGCGGCCGGGGTGG > NC_000913/1923028‑1923207
|
gagCATAACCTTGTCTAATGTCTGAGTCGAGGATCATCAATTCCGGCTTGCCATCCTGGCTCACTCTTAGTAACTTTTGCCCGCGAAtgacga > 1:6071845/1‑93 (MQ=255)
gagCATAACCTTGTCTAATGTCTGAGTCGAGGATCATCAATTCCGGCTTGCCATCCTGGCTCACTCTTAGTAACTTTTGCCCGCGAAtgacga < 2:2898528/93‑1 (MQ=255)
agCATAACCTTGTCTAATGTCTGAGTCGAGGATCATCAATTCCGGCTTGCCATCCTGGCTCACTCTTAGTAACTTTTGCCCGCGAATGACgag < 2:7844201/93‑1 (MQ=255)
agCATAACCTTGTCTAATGTCTGAGTCGAGGATCATCAATTCCGGCTTGCCATCCTGGCTCACTCTTAGTAACTTTTGCCCGCGAATGACgag < 2:532993/93‑1 (MQ=255)
gCATAACCTTGTCTAATGTCTGAGTCGAGGATCATCAATTCCGGCTTGCCATCCTGGCTCACTCTTAGTAACTTTTGCCCGCGAATGACgagg < 1:2557576/93‑1 (MQ=255)
cATAACCTTGTCTAATGTCTGAGTCGAGGATCATCAATTCCGGCTTGCCATCCTGGCTCACTCTTAGTAACTTTTGCCCGCGAATGACgagga > 2:2799158/1‑93 (MQ=255)
cATAACCTTGTCTAATGTCTGAGTCGAGGATCATCAATTCCGGCTTGCCATCCTGGCTCACTCTTAGTAACTTTTGCCCGCGAATGACgagga < 2:6628330/93‑1 (MQ=255)
tAACCTTGTCTAATGTCTGAGTCGAGGATCATCAATTCCGGCTTGCCATCCTGGCTCACTCTTAGTAACTTTTGCCCGCGAATGACGAGgaga < 2:932365/93‑1 (MQ=255)
tAACCTTGTCTAATGTCTGAGTCGAGGATCATCAATTCCGGCTTGCCATCCTGGCTCACTCTTAGTAACCTTTGCCCGCGAATGACGAGgaga > 1:54863/1‑93 (MQ=255)
aCCTTGTCTAATGTCTGGGTCGAGGATCATCAATTCCGGCTTGCCATCCTGGCTCACTCTTAGTAACTTTTGCCCGCGAATGACGAGGAGAtt > 1:6513924/1‑93 (MQ=255)
aCCTTGTCTAATGTCTGAGTCGAGGATCATCAATTCCGGCTTGCCATCCTGGCTCACTCTTAGTAACTTTTGCCCGCGAATGACGAGGAGAtt > 2:1251666/1‑93 (MQ=255)
aCCTTGTCTAATGTCTGAGTCGAGGATCATCAATTCCGGCTTGCCATCCTGGCTCACTCTTAGTAACTTTTGCCCGCGAATGACGAGGAGAtt < 1:2453909/93‑1 (MQ=255)
ccTTGTCTAATGTCTGAGTCGAGGATCATCAATTCCGGCTTGCCATCCTGGCTCACTCTTAGTAACTTTTGCCCGCGAATGACGAGGAGATTa < 2:6167775/93‑1 (MQ=255)
cTTGTCTAATGTCTGAGTCGAGGATCATCAATTCCGGCTTGCCATCCTGGCTCACTCTTAGTAACTTTTGCCCGCGAATGACGAGGAGATTaa < 1:6998196/93‑1 (MQ=255)
ttGTCTAATGTCTGAGTCGAGGATCATCAATTCCGGCTTGCCATCCTGGCTCACTCTTAGTAACTTTTGCCCGCGAATGACGAGGCGATTacg > 1:3656965/1‑91 (MQ=255)
ttGTCTAATGTCTGAGTCGAGGATCATCAATTCCGGCTTGCCATCCTGGCTCACTCTTAGTAACTTTTGCCCGCGAATGACGAGGAGATTaaa > 1:1496563/1‑92 (MQ=255)
ttGTCTAATGTCTGAGTCGAGGATCATCAATTCCGGCTTGCCATCCTGGCTCACTCTTAGTAACTTTTGCCCGCGAATGACGAGGAGATTAAg > 1:3966075/1‑93 (MQ=255)
tGTCTAATGTCTGAGTCGAGGATCATCAATTCCGGCTTGCCATCCTGGCTCACTCTTAGTAACTTTTGCCCGCGAATGACGAGGAGATTAAGa < 1:2052730/93‑1 (MQ=255)
gTCTAATGTCTGAGTCGAGGATCATCAATTCCGGCTTGCCATCCTGGCTCACTCTTAGTAACTTTTGCCCGCGAATGACGAGGAGATTAAGaa < 1:1415768/93‑1 (MQ=255)
gTCTAATGTCTGAGTCGAGGATCATCAATTCCGGCTTGCCATCCTGGCTCACTCTTAGTAACTTTTGCCCGCGAATGACGAGGAGATTAAGaa < 1:2754329/93‑1 (MQ=255)
tCTAATGTCTGAGTCGAGGATCATCAATTCCGGCTTGCCATCCTGGCTCACTCTTAGTAACTTTTGCCCGCGAATGACGAGGAGATTAAGAAt < 2:6739961/93‑1 (MQ=255)
tCTAATGTCTGAGTCGAGGATCATCAATTCCGGCTTGCCATCCTGGCTCACTCTTAGTAACTTTTGCCCGCGAATGACGAGGAGATTAAGAAt > 2:1691595/1‑93 (MQ=255)
cTAATGTCTGAGTCGAGGATCATCAATTCCGGCTTGCCATCCTGGCTCACTCTTAGTAACTTTTGCCCGCGAATGACGAGGAGATTAAGAATg > 1:1179903/1‑93 (MQ=255)
tAATGTCTGAGTCGAGGATCATCAATTCCGGCTTGCCATCCTGGCTCACTCTTAGTAACTTTTGCCCGCGAATGACGAGGAGATTAAGAATGc < 1:2362165/93‑1 (MQ=255)
aaTGTCTGAGTCGAGGATCATCAATTCCGGCTTGCCATCCTGGCTCACTCTTAGTAACTTTTGCCCGCGAATGACGAGGAGATTAAGAATGCt > 2:1478989/1‑93 (MQ=255)
aaTGTCTGAGTCGAGGATCATCAATTCCGGCTTGCCATCCTGGCTCACTCTTAGTAACTTTTGCCCGCGAATGACGAGGAGATTAAGAATGCt > 2:6347327/1‑93 (MQ=255)
aaTGTCTGAGTCGAGGATCATCAATTCCGGCTTGCCATCCTGGCTCACTCTTAGTAACTTTTGCCCGCGAATGACGAGGAGATTAAGAATGCt < 2:3777915/93‑1 (MQ=255)
tGTCTGAGTCGAGGATCATCAATTCCGGCTTGCCATCCTGGCTCACTCTTAGTAACTTTTGCCCGCGAATGACGAGGAGATTAAGAATGCTga > 2:4049170/1‑93 (MQ=255)
tGAGTCGAGGATCATCAATTCCGGCTTGCCATCCTGGCTCACTCTTAGTAACTTTTGCCCGCGAATGATGAGGAGATTAAGAATGCTgaagaa > 1:7033102/1‑93 (MQ=255)
aGTCGAGGATCATCAATTCCGGCTTGCCATCCTGGCTCACTCTTAGTAACTTTTGCCCGCGAATGACGAGGAGATTAAGAATGCTGAAGAATc < 1:1261009/93‑1 (MQ=255)
aGTCGAGGATCATCAATTCCGGCTTGCCATCCTGGCTCACTCTTAGTAACTTTTGCCCGCGAATGACGAGGAGATTAAGAATGCTGAAGAATc < 1:3338189/93‑1 (MQ=255)
gTCGAGGATCATCAATTCCGGCTTGCCATCCTGGCTCACTCTTAGTAACTTTTGCCCGCGAATGACGAGGAGATTAAGAATGCTGAAGAATCt < 2:449656/93‑1 (MQ=255)
gTCGAGGATCATCAATTCCGGCTTGCCATCCTGGCTCACTCTTAGTAACTTTTGCCCGCGAATGACGAGGAGATTAAGAATGCTGAAGAATCt < 1:2097288/93‑1 (MQ=255)
gTCGAGGATCATCAATTCCGGCTTGCCATCCTGGCTCACTCTTAGTAACTTTTGCCCGCGAATGACGAGGAGATTAAGAATGCTGAAGAATCt < 2:2178401/93‑1 (MQ=255)
tCGAGGATCATCAATTCCGGCTTGCCATCCTGGCTCACTCTTAGTAACTTTTGCCCGCGAATGACGAGGAGATTAAGAATGCTGAAGAATCTg < 2:1368605/93‑1 (MQ=255)
gAGGATCATCAATTCCGGCTTGCCATCCTGGCTCACTCTTAGTAACTTTTGCCCGCGAATGACGAGGAGATTAAGAATGCTGAAGAATCTGGc < 2:2939093/93‑1 (MQ=255)
gAGGATCATCAATTCCGGCTTGCCATCCTGGCTCACTCTTAGTAACTTTTGCCCGCGAATGACGAGGAGATTAAGAATGCTGAAGAATCTGGc > 2:5676288/1‑93 (MQ=255)
aGGATCATCAATTCCGGCTTGCCATCCTGGCTCACTCTTAGTAACTTTTGCCCGCGAATGACGAGGAGATTAAGAATGCTGAAGAATCTGGCt < 2:562445/93‑1 (MQ=255)
ggATCATCAATTCCGGCTTGCCATCCTGGCTCACTCTTAGTAACTTTTGCCCGCGAATGACGAGGAGATTAAGAATGCTGAAGAATCTGGCTa > 1:4816235/1‑93 (MQ=255)
ggATCATCAATTCCGGCTTGCCATCCTGGCTCACTCTTAGTAACTTTTGCCCGCGAATGACGAGGAGATTAAGAATGCTGAAGAATCTGGCTa > 2:1797470/1‑93 (MQ=255)
catcaATTCCGGCTTGCCATCCTGGCTCACTCTTAGTAACTTTTGCCCGCGAATGACGAGGAGATTAAGAATGCTGAAGAATCTGGCTAAACt > 2:481969/1‑93 (MQ=255)
catcaATTCCGGCTTGCCATCCTGGCTCACTCTTAGTAACTTTTGCCCGCGAATGACGAGGAGATTAAGAATGCTGAAGAATCTGGCTAAACt < 1:3639448/93‑1 (MQ=255)
tcaATTCCGGCTTGCCATCCTGGCTCACTCTTAGTAACTTTTGCCCGCGAATGACGAGGAGATTAAGAATGCTGAAGAATCTGGCTAAACTgg > 2:6075228/1‑93 (MQ=255)
tcaATTCCGGCTTGCCATCCTGGCTCACTCTTAGTAACTTTTGCCCGCGAATGACGAGGAGATTAAGAATGCTGAAGAATCTGGCTAAACTgg > 1:7410564/1‑93 (MQ=255)
caATTCCGGCTTGCCATCCTGGCTCACTCTTAGTAACTTTTGCCCGCGAATGACGAGGAGATTAAGAATGCTGAAGAATCTGGCTAAACTGGa > 1:3116923/1‑93 (MQ=255)
caATTCCGGCTTGCCATCCTGGCTCACTCTTAGTAACTTTTGCCCGCGAATGACGAGGAGATTAAGAATGCTGAAGAATCTGGCTAAACTGGa < 1:52180/93‑1 (MQ=255)
tCCGGCTTGCCATCCTGGCTCACTCTTAGTAACTTTTGCCCGCGAATGACGAGGAGATTAAGAATGCTGAAGAATCTGGCTAAACTGGATCaa < 2:7423545/93‑1 (MQ=255)
ccGGCTTGCCATCCTGGCTCACTCTTAGTAACTTTTGCCCGCGAATGACGAGGAGATTAAGAATGCTGAAGAATCTGGCTAAACTGGATCaaa < 2:4937730/93‑1 (MQ=255)
ccGGCTTGCCATCCTGGCTCACTCTTAGTAACTTTTGCCCGCGAATGACGAGGAGATTAAGAATGCTGAAGAATCTGGCTAAACTGGATCaaa < 1:856351/93‑1 (MQ=255)
ccGGCTTGCCATCCTGGCTCACTCTTAGTAACTTTTGCCCGCGAATGACGAGGAGATTAAGAATGCTGAAGAATCTGGCTAAACTGGATCaaa < 1:5998447/93‑1 (MQ=255)
ggCTTGCCATCCTGGCTCACTCTTAGTAACTTTTGCCCGCGAATGACGAGGAGATTAAGAATGCTGAAGAATCTGGCTAAACTGGATCAAACa < 2:3518484/93‑1 (MQ=255)
ttGCCATCCTGGCTCACTCTTAGTAACTTTTGCCCGCGAATGACGAGGAGATTAAGAATGCTGAAGAATCTGGCTAAACTGGATCAAACAGaa < 1:667066/93‑1 (MQ=255)
tGCCATCCTGGCTCACTCTTAGTAACTTTTGCCCGCGAATGACGAGGAGATTAAGAATGCTGAAGAATCTGGCTAAACTGGATCAAACAGaaa < 1:6709332/93‑1 (MQ=255)
tGCCATCCTGGCTCACTCTTAGTAACTTTTGCCCGCGAATGACGAGGAGATTAAGAATGCTGAAGAATCTGGCTAAACTGGATCAAACAGaaa < 2:5955755/93‑1 (MQ=255)
tGCCATCCTGGCTCACTCTTAGTAACTTTTGCCCGCGAATGACGAGGAGATTAAGAATGCTGAAGAATCTGGCTAAACTGGATCAAACAGaaa < 2:1541266/93‑1 (MQ=255)
tGCCATCCTGGCTCACTCTTAGTAACTTTTGCCCGCGAATGACGAGGAGATTAAGAATGCTGAAGAATCTGGCTAAACTGGATCAAACAGaaa > 1:6619493/1‑93 (MQ=255)
ccATCCTGGCTCACTCTTAGTAACTTTTGCCCGCGAATGACGAGGAGATTAAGAATGCTGAAGAATCTGGCAAAACTGGATCAAACAGAAATg < 1:6178891/93‑1 (MQ=255)
cATCCTGGCTCACTCTTAGTAACTTTTGCCCGCGAATGACGAGGAGATTAAGAATGCTGAAGAATCTGGCTAAACTGGATCAAACAGAAATgg > 2:5049867/1‑93 (MQ=255)
aTCCTGGCTCACTCTTAGTAACTTTTGCCCGCGAATGACGAGGAGATTAAGAATGCTGAAGAATCTGGCTAAACTGGATCAAACAGAAATGGa < 2:4439872/93‑1 (MQ=255)
aTCCTGGCTCACTCTTAGTAACTTTTGCCCGCGAATGACGAGGAGATTAAGAATGCTGAAGAATCTGGCTAAACTGGATCAAACAGAAATGGa > 2:6487876/1‑93 (MQ=255)
aTCCTGGCTCACTCTTAGTAACTTTTGCCCGCGAATGACGAGGAGATTAAGAATGCTGAAGAATCTGGCTAAACTGGATCAAACAGAAATGGa < 2:5275536/93‑1 (MQ=255)
tCCTGGCTCACTCTTAGTAACTTTTGCCCGCGAATGACGAGGAGATTAAGAATGCTGAAGAATCTGGCTAAACTGGATCAAACAGAAATGGAt > 2:7291619/1‑93 (MQ=255)
tCCTGGCTCACTCTTAGTAACTTTTGCCCGCGAATGACGAGGAGATTAAGAATGCTGAAGAATCTGGCTAAACTGGATCAAACAGAAATGGAt > 2:3986444/1‑93 (MQ=255)
ccTGGCTCTCTCTTAGTAACTTTTGCCCTCGAATGACGAGGAGATTAAGAATGCTGAAGAATCTGGCTAAACTGGATCAAACAGAAATGGATa < 1:6372526/93‑1 (MQ=255)
ggCTCACTCTTAGTAACTTTTGCCCGCGAATGACGAGGAGATTAAGAATGCTGAAGAATCTGGCTAAACTGGATCAAACAGAAATGGATAAAg < 1:3872684/93‑1 (MQ=255)
gCTCACTCTTAGTAACTTTTGCCCGCGAATGACGAGGAGATTAAGAATGCTGAAGAATCTGGCTAAACTGGATCAAACAGAAATGGATAAAGt < 2:6966168/93‑1 (MQ=255)
gCTCACTCTTAGTAACTTTTGCCCGCGAATGACGAGGAGATTAAGAATGCTGAAGAATCTGGCTAAACTGGATCAAACAGAAATGGATAAAGt > 2:371766/1‑93 (MQ=255)
tCACTCTTAGTAACTTTTGCCCGCGAATGACGAGGAGATTAAGAATGCTGAAGAATCTGGCTAAACTGGATCAAACAGAAATGGATAAAGTGa > 2:1068684/1‑93 (MQ=255)
tCACTCTTAGTAACTTTTGCCCGCGAATGACGAGGAGATTAAGAATGCTGAAGAATCTGGCTAAACTGGATCAAACAGAAATGGATAAAGTGa < 1:357646/93‑1 (MQ=255)
tCACTCTTAGTAACTTTTGCCCGCGAATGACGAGGAGATTAAGAATGCTGAAGAATCTGGCTAAACTGGATCAAACAGAAATGGATAAAGTGa > 1:2222138/1‑93 (MQ=255)
cACTCTTAGTAACTTTTGCCCGCGAATGACGAGGAGATTAAGAATGCTGAAGAATCTGGCTAAACTGGATCAAACAGAAATGGATAAAGTGaa < 1:168914/93‑1 (MQ=255)
cACTCTTAGTAACTTTTGCCCGCGAATGACGAGGAGATTAAGAATGCTGAAGAATCTGGCTAAACTGGATCAAACAGAAATGGATAAAGTGaa > 1:6036640/1‑93 (MQ=255)
cACTCTTAGTAACTTTTGCCCGCGAATGACGAGGAGATTAAGAATGCTGAAGAATCTGGCTAAACTGGATCAAACAGAAATGGATAAAGTGaa < 2:4309461/93‑1 (MQ=255)
cACTCGTAGTAACTTTTGCCCGCGAATGACGAGGAGATTAAGAATGCTGAAGAATCTGGCTAAACTGGATCAAACAGAAATGGATAAAGTGaa < 2:837977/93‑1 (MQ=255)
aCTCTTAGTAACTTTTGCCCGCGAATGACGAGGAGATTAAGAATGCTGAAGAATCTGGCTAAACTGGATCAAACAGAAATGGATAAAGTGAAt > 1:6533442/1‑93 (MQ=255)
aCTCTTAGTAACTTTTGCCCGCGAATGACGAGGAGATTAAGAATGCTGAAGAATCTGGCTAAACTGGATCAAACAGAAATGGATAAAGTGAAt > 1:7309440/1‑93 (MQ=255)
tctTAGTAACTTTTGCCCGCGAATGACGAGGAGATTAAGAATGCTGAAGAATCTGGCTAAACTGGATCAAACAGAAATGGATAAAGTGAATGt < 1:7725041/93‑1 (MQ=255)
tctTAGTAACTTTTGCCCGCGAATGACGAGGAGATTAAGAATGCTGAAGAATCTGGCTAAACTGGATCAAACAGAAATGGATAAAGTGAATGt > 1:5225249/1‑93 (MQ=255)
tctTAGTAACTTTTGCCCGCGAATGACGAGGAGATTAAGAATGCTGAAGAATCTGGCTAAACTGGATCAAACAGAAATGGATAAAGTGAATGt > 1:2405951/1‑93 (MQ=255)
ctTAGTAACTTTTGCCCGCGAATGACGAGGAGATTAAGAATGCTGAAGAATCTGGCTAAACTGGATCAAACAGAAATGGATAAAGTGAATGTc > 1:4151883/1‑93 (MQ=255)
ctTAGTAACTTTTGCCCGCGAATGACGAGGAGATTAAGAATGCTGAAGAATCTGGCTAAACTGGATCAAACAGAAATGGATAAAGTGAATGTc < 2:393546/93‑1 (MQ=255)
ttAGTAACTTTTGCCCGCGAATGACGAGGAGATTAAGAATGCTGAAGAATCTGGCTAAACTGGATCAAACAGAAATGGATAAAGTGAATGTCg < 1:5727137/93‑1 (MQ=255)
tAGTAACTTTTGCCCGCGAATGACGAGGAGATTAAGAATGCTGAAGAATCTGGCTAAACTGGATCAAACAGAAATGGATAAAGTGAATGTCGa > 1:4431128/1‑93 (MQ=255)
tAGTAACTTTTGCCCGCGAATGACGAGGAGATTAAGAATGCTGAAGAATCTGGCTAAACTGGATCAAACAGAAATGGATAAAGTGAATGTCGa < 2:2858818/93‑1 (MQ=255)
gTAACTTTTGCCCGCGAATGACGAGGAGATTAAGAATGCTGAAGAATCTGGCTAAACTGGATCAAACAGAAATGGATAAAGTGAATGTCGAtt < 1:1506222/93‑1 (MQ=255)
gTAACTTTTGCCCGCGAATGACGAGGAGATTAAGAATGCTGAAGAATCTGGCTAAACTGGATCAAACAGAAATGGATAAAGTGAATGTCGAtt > 2:2228813/1‑93 (MQ=255)
tAACTTTTGCCCGCGAATGACGAGGAGATTAAGAATGCTGAAGAATCTGGCTAAACTGGATCAAACAGAAATGGATAAAGTGAATGTCGAttt < 2:5721144/93‑1 (MQ=255)
aaCTTTTGCCCGCGAATGACGAGGAGATTAAGAATGCTGAAGAATCTGGCTAAACTGGATCAAACAGAAATGGATAAAGTGAATGTCGATTTg > 1:7849867/1‑93 (MQ=255)
aCTTTTGCCCGCGAATGACGAGGAGATTAAGAATGCTGAAGAATCTGGCTAAACTGGATCAAACAGAAATGGATAAAGTGAATGTCGATTTgg > 1:4024540/1‑93 (MQ=255)
ttGCCCGCGAATGACGAGGAGATTAAGAATGCTGAAGAATCTGGCTAAACTGGATCAAACAGAAATGGATAAAGTGAATGTCGATTTggcggc < 2:2543446/93‑1 (MQ=255)
ttGCCCGCGAATGACGAGGAGATTAAGAATGCTGAAGAATCTGGCTAAACTGGATCAAACAGAAATGGATAAAGTGAATGTCGATTTggcggc < 1:3399142/93‑1 (MQ=255)
ttGCCCGCGAATGACGAGGAGATTAAGAATGCTGAAGAAGCTGGCTAAACTGGATCAAACAGAAATGGATAAAGTGAATGTCGATTTggcggc < 1:1606947/93‑1 (MQ=255)
ccGCGAATGACGAGGAGATTAAGAATGCTGAAGAATCTGGCTAAACTGGATCAAACAGAAATGGATAAAGTGAATGTCGATTTGGCGGCGGcc > 1:5253956/1‑93 (MQ=255)
gcgAATGACGAGGAGATTAAGAATGCTGAAGAATCTGGCTAAACTGGATCAAACAGAAATGGATAAAGTGAATGTCGATTTGGCGGCGGCCgg > 1:1582055/1‑93 (MQ=255)
cgAATGACGAGGAGATTAAGAATGCTGAAGAATCTGGCTAAACTGGATCAAACAGAAATGGATAAAGTGAATGTCGATTTGGCGGCGGCCggg < 2:2041/93‑1 (MQ=255)
aaTGACGAGGAGATTAAGAATGCTGAAGAATCTGGCTAAACTGGATCAAACAGAAATGGATAAAGTGAATGTCGATTTGGCGGCGGCCGGGGt < 2:5528092/93‑1 (MQ=255)
aaTGACGAGGAGATTAAGAATGCTGAAGAATCTGGCTAAACTGGATCAAACAGAAATGGATAAAGTGAATGTCGATTTGGCGGCGGCCGGGGt < 2:5131287/93‑1 (MQ=255)
aaTGACGAGGAGATTAAGAATGCTGAAGAATCTGGCTAAACTGGATCAAACAGAAATGGATAAAGTGAATGTCGATTTGGCGGCGGCCGGGGt < 1:6762973/93‑1 (MQ=255)
aaTGACGAGGAGATTAAGAATGCTGAAGAATCTGGCTAAACTGGATCAAACAGAAATGGATAAAGTGAATGACGATTTGGCGGCGGCCggggg > 2:7734869/1‑92 (MQ=255)
atgacgAGGAGATTAAGAATGCTGAAGAATCTGGCTAAACTGGATCAAACAGAAATGGATAAAGTGAATGTCGATTTGGCGGCGGCCGGGGTg < 1:1052816/93‑1 (MQ=255)
|
GAGCATAACCTTGTCTAATGTCTGAGTCGAGGATCATCAATTCCGGCTTGCCATCCTGGCTCACTCTTAGTAACTTTTGCCCGCGAATGATGAGGAGATTAAGAATGCTGAAGAATCTGGCTAAACTGGATCAAACAGAAATGGATAAAGTGAATGTCGATTTGGCGGCGGCCGGGGTGG > NC_000913/1923028‑1923207
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
ACAGAGCATAACCTTGTCTAATGTCTGAGTCGAGGATCATCAATTCCGGCTTGCCATCCTGGCTCACTCTTAGTAACTTTTGCCCGCGAATGATGAGGAGATTAAGAATGCTGAAGAATCTGGCTAAACTGGATCAAACAGAAATGGATAAAGTGAATGTCGATTTGGCGGCGGCCGGGGTGGCATT > NC_000913/1923025‑1923211
|
ACAGAGCATAACCTTGTCTAATGTCTGAGTCGAGGATCATCAATTCCGGCTTGCCATCCTGGCTCACTCTTAGTAACTTTTGCCCGCGAATGAC < SRR4302543.4735909/94‑1 (MQ=60)
CAGAGCATAACCTTGTCTAATGTCTGAGTCGAGGATCATCAATTCCGGCTTGCCATCCTGGCTCACTCTTAGTAACTTTTGCCCGCGAATGACG < SRR4302543.2628324/94‑1 (MQ=60)
AGAGCATAACCTTGTCTAATGTCTGAGTCGAGGATCATCAATTCCGGCTTGCCATCCTGGCTCACTCTTAGTAACTTTTGCCCGCGAATGACGA < SRR4302543.4814036/94‑1 (MQ=60)
AGAGCATAACCTTGTCTAATGTCTGAGTCGAGGATCATCAATTCCGGCTTGCCATCCTGGCTCACTCTTAGTAACTTTTGCCCGCGAATGACGA > SRR4302543.6129389/1‑94 (MQ=60)
AGAGCATAACCTTGTCTAATGTCTGAGTCGAGGATCATCAATTCCGGCTTGCCATCCTGGCTCACTCTTAGTAACTTTTGCCCGCGAATGACGA > SRR4302543.6129390/1‑94 (MQ=60)
AGAGCATAACCTTGTCTAATGTCTGAGTCGAGGATCATCAATTCCGGCTTGCCATCCTGGCTCACTCTTAGTAACTTCTGCCCGCGAATGACGA > SRR4302543.6129388/1‑94 (MQ=60)
GAGCATAACCTTGTCTAATGTCTGAGTCGAGGATCATCAATTCCGGCTTGCCATCCTGGCTCACTCTTAGTAACTTTTGCCCGCGAATGACGAG < SRR4302543.2104173/94‑1 (MQ=60)
AGCATAACCTTGTCTAATGTCTGAGTCGAGGATCATCAATTCCGGCTTGCCATCCTGGCTCACTCTTAGTAACTTTTGCCCGCGAATGACGAGG > SRR4302543.7404618/1‑94 (MQ=60)
AGCATAACCTTGTCTAATGTCTGAGTCGAGGATCATCAATTCCGGCTTGCCATCCTGGCTCACTCTTAGTAACTTTTGCCCGCGAATGACGAGG < SRR4302543.6946989/94‑1 (MQ=60)
GCATAACCTTGTCTAATGTCTGAGTCGAGGATCATCAATTCCGGCTTGCCATCCTGGCTCACTCTTAGTAACTTTTGCCCGCGAATGACGAGGA < SRR4302543.2580953/94‑1 (MQ=60)
ATAACCTTGTCTAATGTCTGAGTCGAGGATCATCAATTCCGGCTTGCCATCCTGGCTCACTCTTAGTAACCTTTGCCCGCGAATGACGAGGAGA > SRR4302543.55350/1‑94 (MQ=60)
TAACCTTGTCTAATGTCTGAGTCGAGGATCATCAATTCCGGCTTGCCATCCTGGCTCACTCTTAGTAACTTTTGCCCGCGAATGACGAGGAGAT > SRR4302543.5283304/1‑94 (MQ=60)
AACCTTGTCTAATGTCTGGGTCGAGGATCATCAATTCCGGCTTGCCATCCTGGCTCACTCTTAGTAACTTTTGCCCGCGAATGACGAGGAGATT > SRR4302543.6575281/1‑94 (MQ=60)
ACCTTGTCTAATGTCTGAGTCGAGGATCATCAATTCCGGCTTGCCATCCTGGCTCACTCTTAGTAACTTTTGCCCGCGAATGACGAGGAGATTA < SRR4302543.2476039/94‑1 (MQ=60)
CTTGTCTAATGTCTGAGTCGAGGATCATCAATTCCGGCTTGCCATCCTGGCTCACTCTTAGTAACTTTTGCCCGCGAATGACGAGGCGATTACG > SRR4302543.3689083/1‑94 (MQ=60)
CTTGTCTAATGTCTGAGTCGAGGATCATCAATTCCGGCTTGCCATCCTGGCTCACTCTTAGTAACTTTTGCCCGCGAATGACGAGGAGATTAAG < SRR4302543.7064351/94‑1 (MQ=60)
CTTGTCTAATGTCTGAGTCGAGGATCATCAATTCCGGCTTGCCATCCTGGCTCACTCTTAGTAACTTTTGCCCGCGAATGACGAGGAGATTAAG > SRR4302543.4001209/1‑94 (MQ=60)
CTTGTCTAATGTCTGAGTCGAGGATCATCAATTCCGGCTTGCCATCCTGGCTCACTCTTAGTAACTTTTGCCCGCGAATGACGAGGAGATTAAG > SRR4302543.1510031/1‑94 (MQ=60)
CTTGTCTAATGTCTGAGTCGAGGATCATCAATTCCGGCTTGCCATCCTGGCTCACTCTTAGTAACTTTTGCCCGCGAATGACGAGGAGATTAAA > SRR4302543.1510030/1‑94 (MQ=60)
TGTCTAATGTCTGAGTCGAGGATCATCAATTCCGGCTTGCCATCCTGGCTCACTCTTAGTAACTTTTGCCCGCGAATGACGAGGAGATTAAGAA < SRR4302543.2071105/94‑1 (MQ=60)
GTCTAATGTCTGAGTCGAGGATCATCAATTCCGGCTTGCCATCCTGGCTCACTCTTAGTAACTTTTGCCCGCGAATGACGAGGAGATTAAGAAT < SRR4302543.2779386/94‑1 (MQ=60)
GTCTAATGTCTGAGTCGAGGATCATCAATTCCGGCTTGCCATCCTGGCTCACTCTTAGTAACTTTTGCCCGCGAATGACGAGGAGATTAAGAAT < SRR4302543.3108011/94‑1 (MQ=60)
GTCTAATGTCTGAGTCGAGGATCATCAATTCCGGCTTGCCATCCTGGCTCACTCTTAGTAACTTTTGCCCGCGAATGACGAGGAGATTAAGAAT < SRR4302543.1428585/94‑1 (MQ=60)
TCTAATGTCTGAGTCGAGGATCATCAATTCCGGCTTGCCATCCTGGCTCACTCTTAGTAACTTTTGCCCGCGAATGACGAGGAGATTAAGAATG > SRR4302543.1190579/1‑94 (MQ=60)
TAATGTCTGAGTCGAGGATCATCAATTCCGGCTTGCCATCCTGGCTCACTCTTAGTAACTTTTGCCCGCGAATGACGAGGAGATTAAGAATGCT < SRR4302543.2383587/94‑1 (MQ=60)
TAATGTCTGAGTCGAGGATCATCAATTCCGGCTTGCCATCCTGGCTCACTCTTAGTAACTTTTGCCCGCGAATGACGAGGAGATTAAGAATGCT < SRR4302543.1531866/94‑1 (MQ=60)
ATGTCTGAGTCGAGGATCATCAATTCCGGCTTGCCATCCTGGCTCACTCTTAGTAACTTTTGCCCGCGAATGACGAGGAGATTAAGAATGCTGA < SRR4302543.3566902/94‑1 (MQ=60)
TGTCTGAGTCGAGGATCATCAATTCCGGCTTGCCATCCTGGCTCACTCTTAGTAACTTTTGCCCGCGAATGACGAGGAGATTAAGAATGCTGAA < SRR4302543.8008144/94‑1 (MQ=60)
CTGAGTCGAGGATCATCAATTCCGGCTTGCCATCCTGGCTCACTCTTAGTAACTTTTGCCCGCGAATGATGAGGAGATTAAGAATGCTGAAGAA > SRR4302543.7100751/1‑94 (MQ=60)
nanaTCGNGGATCATCAATTNNGNCTTGCCATCCTGGCTCACTCTTAGTAACTTTTGCCCGCGAATGACGAGGAGATTAAGAATGCTGAAGAAT < SRR4302543.2679498/90‑1 (MQ=60)
AGTCGAGGATCATCAATTCCGGCTTGCCATCCTGGCTCACTCTTAGTAACTTTTGCCCGCGAATGACGAGGAGATTAAGAATGCTGAAGAATCT < SRR4302543.413114/94‑1 (MQ=60)
AGTCGAGGATCATCAATTCCGGCTTGCCATCCTGGCTCACTCTTAGTAACTTTTGCCCGCGAATGACGAGGAGATTAAGAATGCTGAAGAATCT < SRR4302543.3368263/94‑1 (MQ=60)
AGTCGAGGATCATCAATTCCGGCTTGCCATCCTGGCTCACTCTTAGTAACTTTTGCCCGCGAATGACGAGGAGATTAAGAATGCTGAAGAATCT < SRR4302543.1272290/94‑1 (MQ=60)
GTCGAGGATCATCAATTCCGGCTTGCCATCCTGGCTCACTCTTAGTAACTTTTGCCCGCGAATGACGAGGAGATTAAGAATGCTGAAGAATCTG < SRR4302543.2116037/94‑1 (MQ=60)
TCGAGGATCATCAATTCCGGCTTGCCATCCTGGCTCACTCTTAGTAACTTTTGCCCGCGAATGACGAGGAGATTAAGAATGCTGAAGAATCTGG < SRR4302543.7194733/94‑1 (MQ=60)
AGGATCATCAATTCCGGCTTGCCATCCTGGCTCACTCTTAGTAACTTTTGCCCGCGAATGACGAGGAGATTAAGAATGCTGAAGAATCTGGCTA > SRR4302543.596987/1‑94 (MQ=60)
AGGATCATCAATTCCGGCTTGCCATCCTGGCTCACTCTTAGTAACTTTTGCCCGCGAATGACGAGGAGATTAAGAATGCTGAAGAATCTGGCTA > SRR4302543.4860208/1‑94 (MQ=60)
AGGATCATCAATTCCGGCTTGCCATCCTGGCTCACTCTTAGTAACTTTTGCCCGCGAATGACGAGGAGATTAAGAATGCTGAAGAATCTGGCTA > SRR4302543.154460/1‑94 (MQ=60)
AGGATCATCAATTCCGGCTTGCCATCCTGGCTCACTCTTAGTAACTTTTGCCCGCGAATGACGAGGAGATTAAGAATGCTGAAGAATCTGGCTA < SRR4302543.2195755/94‑1 (MQ=60)
GATCATCAATCCCGGCTTGCCATCCTGGCTCACTCTTAGTAACTTTTGCCCGCGAATGACGAGGAGATTAAGAATGCTGAAGAATCTGGCTAAA < SRR4302543.3065731/94‑1 (MQ=60)
ATCATCAATTCCGGCTTGCCATCCTGGCTCACTCTTAGTAACTTTTGCCCGCGAATGACGAGGAGATTAAGAATGCTGAAGAATCTGGCTAAAC > SRR4302543.5359901/1‑94 (MQ=60)
TCATCAATTCCGGCTTGCCATCCTGGCTCACTCTTAGTAACTTTTGCCCGCGAATGACGAGGAGATTAAGAATGCTGAAGAATCTGGCTAAACT > SRR4302543.1506493/1‑94 (MQ=60)
TCATCAATTCCGGCTTGCCATCCTGGCTCACTCTTAGTAACTTTTGCCCGCGAATGACGAGGAGATTAAGAATGCTGAAGAATCTGGCTAAACT < SRR4302543.7500309/94‑1 (MQ=60)
CATCAATTCCGGCTTGCCATCCTGGCTCACTCTTAGTAACTTTTGCCCGCGAATGACGAGGAGATTAAGAATGCTGAAGAATCTGGCTAAACTG > SRR4302543.2317427/1‑94 (MQ=60)
CATCAATTCCGGCTTGCCATCCTGGCTCACTCTTAGTAACTTTTGCCCGCGAATGACGAGGAGATTAAGAATGCTGAAGAATCTGGCTAAACTG < SRR4302543.3671475/94‑1 (MQ=60)
ATCAATTCCGGCTTGCCATCCTGGCTCACTCTTAGTAACTTTTGCCCGCGAATGACGAGGAGATTAAGAATGCTGAAGAATCTGGCTAAACTGG > SRR4302543.7481670/1‑94 (MQ=60)
TCAATTCCGGCTTGCCATCCTGGCTCACTCTTAGTAACTTTTGCCCGCGAATGACGAGGAGATTAAGAATGCTGAAGAATCTGGCTAAACTGGA > SRR4302543.3144958/1‑94 (MQ=60)
TCAATTCCGGCTTGCCATCCTGGCTCACTCTTAGTAACTTTTGCCCGCGAATGACGAGGAGATTAAGAATGCTGAAGAATCTGGCTAAACTGGA < SRR4302543.42714/94‑1 (MQ=60)
CAATTCCGGCTTGCCATCCTGGCTCACTCTTAGTAACTTTTGCCCGCGAATGACGAGGAGATTAAGAATGCTGAAGAATCTGGCTAAACTGGAT < SRR4302543.6358491/94‑1 (MQ=60)
CAATTCCGGCTTGCCATCCTGGCTCACTCTTAGTAACTTTTGCCCGCGAATGACGAGGAGATTAAGAATGCTGAAGAATCTGGCTAAACTGGAT < SRR4302543.52645/94‑1 (MQ=60)
CAATTCCGGCTTGCCATCCTGGCTCACTCTTAGTAACTTTTGCCCGCGAATGACGAGGAGATTAAGAATGCTGAAGAATCTGGCTAAACTGGAT < SRR4302543.52644/94‑1 (MQ=60)
ATTCCGGCTTGCCATCCTGGCTCACTCTTAGTAACTTTTGCCCGCGAATGACGAGGAGATTAAGAATGCTGAAGAATCTGGCTAAACTGGATCA < SRR4302543.7064394/94‑1 (MQ=60)
CCGGCTTGCCATCCTGGCTCACTCTTAGTAACTTTTGCCCGCGAATGACGAGGAGATTAAGAATGCTGAAGAATCTGGCTAAACTGGATCAAAC < SRR4302543.607164/94‑1 (MQ=60)
CCGGCTTGCCATCCTGGCTCACTCTTAGTAACTTTTGCCCGCGAATGACGAGGAGATTAAGAATGCTGAAGAATCTGGCTAAACTGGATCAAAC < SRR4302543.6053510/94‑1 (MQ=60)
CCGGCTTGCCATCCTGGCTCACTCTTAGTAACTTTTGCCCGCGAATGACGAGGAGATTAAGAATGCTGAAGAATCTGGCTAAACTGGATCAAAC < SRR4302543.863977/94‑1 (MQ=60)
CGGCTTGCCATCCTGGCTCACTCTTAGTAACTTTTGCCCGCGAATGACGAGGAGATTAAGAATGCTGAAGAATCTGGCTAAACTGGATCAAACA > SRR4302543.661431/1‑94 (MQ=60)
CGGCTTGCCATCCTGGCTCACTCTTAGTAACTTTTGCCCGCGAATGACGAGGAGATTAAGAATGCTGAAGAATCTGGCTAAACTGGATCAAACA < SRR4302543.3684651/94‑1 (MQ=60)
CGGCTTGCCATCCTGGCTCACTCTTAGTAACTTTTGCCCGCGAATGACGAGGAGATTAAGAATGCTGAAGAATCTGGCTAAACTGGATCAAACA < SRR4302543.2423089/94‑1 (MQ=60)
GGCTTGCCATCCTGGCTCACTCTTAGTAACTTTTGCCCGCGAATGACGAGGAGATTAAGAATGCTGAAGAATCTGGCTAAACTGGATCAAACAG < SRR4302543.3783484/94‑1 (MQ=60)
CTTGCCATCCTGGCTCACTCTTAGTAACTTTTGCCCGCGAATGACGAGGAGATTAAGAATGCTGAAGAATCTGGCTAAACTGGATCAAACAGAA < SRR4302543.6698803/94‑1 (MQ=60)
TTGCCATCCTGGCTCACTCTTAGTAACTTTTGCCCGCGAATGACGAGGAGATTAAGAATGCTGAAGAATCTGGCTAAACTGGATCAAACAGAAA < SRR4302543.6559200/94‑1 (MQ=60)
TTGCCATCCTGGCTCACTCTTAGTAACTTTTGCCCGCGAATGACGAGGAGATTAAGAATGCTGAAGAATCTGGCTAAACTGGATCAAACAGAAA < SRR4302543.673204/94‑1 (MQ=60)
TTGCCATCCTGGCTCACTCTTAGTAACTTTTGCCCGCGAATGACGAGGAGATTAAGAATGCTGAAGAATCTGGCTAAACTGGATCAAACAGAAA > SRR4302543.6681917/1‑94 (MQ=60)
TGCCATCCTGGCTCACTCTTAGTAACTTTTGCCCGCGAATGACGAGGAGATTAAGAATGCTGAAGAATCTGGCTAAACTGGATCAAACAGAAAT < SRR4302543.6772694/94‑1 (MQ=60)
TGCCATCCTGGCTCACTCTTAGTAACTTTTGCCCGCGAATGACGAGGAGATTAAGAATGCTGAAGAATCTGGCTAAACTGGATCAAACAGAAAT < SRR4302543.1262369/94‑1 (MQ=60)
TGCCATCCTGGCTCACTCTTAGTAACTTTTGCCCGCGAATGACGAGGAGATTAAGAATGCTGAAGAATCTGGCTAAACTGGATCAAACAGAAAT < SRR4302543.6772693/94‑1 (MQ=60)
TGCCATCCTGGCTCACTCTTAGTAACTTTTGCCCGCGAATGACGAGGAGATTAAGAATGCTGAAGAATCTGGCTAAACTGGATCAAACAGAAAT < SRR4302543.6469161/94‑1 (MQ=60)
GCCATCCTGGCTCACTCTTAGTAACTTTTGCCCGCGAATGACGAGGAGATTAAGAATGCTGAAGAATCTGGCTAAACTGGATCAAACAGAAATG < SRR4302543.1173487/94‑1 (MQ=60)
CCATCCTGGCTCACTCTTAGTAACTTTTGCCCGCGAATGACGAGGAGATTAAGAATGCTGAAGAATCTGGCTAAACTGGATCAAACAGAAATGG < SRR4302543.6739259/94‑1 (MQ=60)
CCATCCTGGCTCACTCTTAGTAACTTTTGCCCGCGAATGACGAGGAGATTAAGAATGCTGAAGAATCTGGCAAAACTGGATCAAACAGAAATGG < SRR4302543.6237303/94‑1 (MQ=60)
CATCCTGGCTCACTCTTAGTAACTTTTGCCCGCGAATGACGAGGAGATTAAGAATGCTGAAGAATCTGGCTAAACTGGATCAAACAGAAATGGA > SRR4302543.3240514/1‑94 (MQ=60)
ATCCTGGCTCACTCTTAGTAACTTTTGCCCGCGAATGACGAGGAGATTAAGAATGCTGAAGAATCTGGCTAAACTGGATCAAACAGAAATGGAT > SRR4302543.4008906/1‑94 (MQ=60)
CCTGGCTCTCTCTTAGTAACTTTTGCCCTCGAATGACGAGGAGATTAAGAATGCTGAAGAATCTGGCTAAACTGGATCAAACAGAAATGGATAA < SRR4302543.6432468/94‑1 (MQ=60)
CCTGGCTCACTCTTAGTAACTTTTGCCCGCGAATGACGAGGAGATTAAGAATGCTGAAGAATCTGGCTAAACTGGATCAAACAGAAATGGATAA < SRR4302543.3843066/94‑1 (MQ=60)
CCTGGCTCACTCTTAGTAACTTTTGCCCGCGAATGACGAGGAGATTAAGAATGCTGAAGAATCTGGCTAAACTGGATCAAACAGAAATGGATAA < SRR4302543.3935353/94‑1 (MQ=60)
CCTGGCTCACTCTTAGTAACTTTTGCCCGCGAATGACGAGGAGATTAAGAATGCTGAAGAATCTGGCTAAACTGGATCAAACAGAAATGGATAA > SRR4302543.4740093/1‑94 (MQ=60)
CTGGCTCACTCTTAGTAACTTTTGCCCGCGAATGACGAGGAGATTAAGAATGCTGAAGAATCTGGCTAAACTGGATCAAACAGAAATGGATAAA < SRR4302543.966825/94‑1 (MQ=60)
GGCTCACTCTTAGTAACTTTTGCCCGCGAATGACGAGGAGATTAAGAATGCTGAAGAATCTGGCTAAACTGGATCAAACAGAAATGGATAAAGT < SRR4302543.3906877/94‑1 (MQ=60)
CTCACTCTTAGTAACTTTTGCCCGCGAATGACGAGGAGATTAAGAATGCTGAAGAATCTGGCTAAACTGGATCAAACAGAAATGGATAAAGTGA > SRR4302543.2242192/1‑94 (MQ=60)
TCACTCTTAGTAACTTTTGCCCGCGAATGACGAGGAGATTAAGAATGCTGAAGAATCTGGCTAAACTGGATCAAACAGAAATGGATAAAGTGAA < SRR4302543.2427846/94‑1 (MQ=60)
TCACTCTTAGTAACTTTTGCCCGCGAATGACGAGGAGATTAAGAATGCTGAAGAATCTGGCTAAACTGGATCAAACAGAAATGGATAAAGTGAA < SRR4302543.360952/94‑1 (MQ=60)
TCACTCTTAGTAACTTTTGCCCGCGAATGACGAGGAGATTAAGAATGCTGAAGAATCTGGCTAAACTGGATCAAACAGAAATGGATAAAGTGAA > SRR4302543.6093585/1‑94 (MQ=60)
CACTCTTAGTAACTTTTGCCCGCGAATGACGAGGAGATTAAGAATGCTGAAGAATCTGGCTAAACTGGATCAAACAGAAATGGATAAAGTGAAT > SRR4302543.6594949/1‑94 (MQ=60)
CACTCTTAGTAACTTTTGCCCGCGAATGACGAGGAGATTAAGAATGCTGAAGAATCTGGCTAAACTGGATCAAACAGAAATGGATAAAGTGAAT < SRR4302543.170364/94‑1 (MQ=60)
CACTCTTAGTAACTTTTGCCCGCGAATGACGAGGAGATTAAGAATGCTGAAGAATCTGGCTAAACTGGATCAAACAGAAATGGATAAAGTGAAT > SRR4302543.7379907/1‑94 (MQ=60)
CACTCTTAGTAACTTTTGCCCGCGAATGACGAGGAGATTAAGAATGCTGAAGAATCTGGCTAAACTGGATCAAACAGAAATGGATAAAGTGAAT > SRR4302543.6594950/1‑94 (MQ=60)
ACTCTTAGTAACTTTTGCCCGCGAATGACGAGGAGATTAAGAATGCTGAAGAATCTGGCTAAACTGGATCAAACAGAAATGGATAAAGTGAATG > SRR4302543.2526147/1‑94 (MQ=60)
CTCTTAGTAACTTTTGCCCGCGAATGACGAGGAGATTAAGAATGCTGAAGAATCTGGCTAAACTGGATCAAACAGAAATGGATAAAGTGAATGT < SRR4302543.1661817/94‑1 (MQ=60)
CTCTTAGTAACTTTTGCCCGCGAATGACGAGGAGATTAAGAATGCTGAAGAATCTGGCTAAACTGGATCAAACAGAAATGGATAAAGTGAATGT > SRR4302543.5272298/1‑94 (MQ=60)
CTCTTAGTAACTTTTGCCCGCGAATGACGAGGAGATTAAGAATGCTGAAGAATCTGGCTAAACTGGATCAAACAGAAATGGATAAAGTGAATGT > SRR4302543.2427703/1‑94 (MQ=60)
CTCTTAGTAACTTTTGCCCGCGAATGACGAGGAGATTAAGAATGCTGAAGAATCTGGCTAAACTGGATCAAACAGAAATGGATAAAGTGAATGT < SRR4302543.7850917/94‑1 (MQ=60)
TCTTAGTAACTTTTGCCCGCGAATGACGAGGAGATTAAGAATGCTGAAGAATCTGGCTAAACTGGATCAAACAGAAATGGATAAAGTGAATGTC < SRR4302543.7798070/94‑1 (MQ=60)
TCTTAGTAACTTTTGCCCGCGAATGACGAGGAGATTAAGAATGCTGAAGAATCTGGCTAAACTGGATCAAACAGAAATGGATAAAGTGAATGTC > SRR4302543.4189420/1‑94 (MQ=60)
TCTTAGTAACTTTTGCCCGCGAATGACGAGGAGATTAAGAATGCTGAAGAATCTGGCTAAACTGGATCAAACAGAAATGGATAAAGTGAATGTC > SRR4302543.5780320/1‑94 (MQ=60)
CTTAGTAACTTTTGCCCGCGAATGACGAGGAGATTAAGAATGCTGAAGAATCTGGCTAAACTGGATCAAACAGAAATGGATAAAGTGAATGTCG < SRR4302543.5156473/94‑1 (MQ=60)
CTTAGTAACTTTTGCCCGCGAATGACGAGGAGATTAAGAATGCTGAAGAATCTGGCTAAACTGGATCAAACAGAAATGGATAAAGTGAATGTCG > SRR4302543.3390484/1‑94 (MQ=60)
TTAGTAACTTTTGCCCGCGAATGACGAGGAGATTAAGAATGCTGAAGAATCTGGCTAAACTGGATCAAACAGAAATGGATAAAGTGAATGTCGA < SRR4302543.5779394/94‑1 (MQ=60)
TTAGTAACTTTTGCCCGCGAATGACGAGGAGATTAAGAATGCTGAAGAATCTGGCTAAACTGGATCAAACAGAAATGGATAAAGTGAATGTCGA > SRR4302543.4471268/1‑94 (MQ=60)
GTAACTTTTGCCCGCGAATGACGAGGAGATTAAGAATGCTGAAGAATCTGGCTAAACTGGATCAAACAGAAATGGATAAAGTGAATGTCGATTT < SRR4302543.4744394/94‑1 (MQ=60)
GTAACTTTTGCCCGCGAATGACGAGGAGATTAAGAATGCTGAAGAATCTGGCTAAACTGGATCAAACAGAAATGGATAAAGTGAATGTCGATTT < SRR4302543.1519750/94‑1 (MQ=60)
TAACTTTTGCCCGCGAATGACGAGGAGATTAAGAATGCTGAAGAATCTGGCTAAACTGGATCAAACAGAAATGGATAAAGTGAATGTCGATTTG > SRR4302543.7923840/1‑94 (MQ=60)
TAACTTTTGCCCGCGAATGACGAGGAGATTAAGAATGCTGAAGAATCTGGCTAAACTGGATCAAACAGAAATGGATAAAGTGAATGTCGATTTG < SRR4302543.233125/94‑1 (MQ=60)
TAACTTTTGCCCGCGAATGACGAGGAGATTAAGAATGCTGAAGAATCTGGCTAAACTGGATCAAACAGAAATGGATAAAGTGAATGTCGATTTG < SRR4302543.3655948/94‑1 (MQ=60)
AACTTTTGCCCGCGAATGACGAGGAGATTAAGAATGCTGAAGAATCTGGCTAAACTGGATCAAACAGAAATGGATAAAGTGAATGTCGATTTGG > SRR4302543.4060501/1‑94 (MQ=60)
TTGCCCGCGAATGACGAGGAGATTAAGAATGCTGAAGAATCTGGCTAAACTGGATCAAACAGAAATGGATAAAGTGAATGTCGATTTGGCGGCG < SRR4302543.1621276/94‑1 (MQ=60)
TTGCCCGCGAATGACGAGGAGATTAAGAATGCTGAAGAATCTGGCTAAACTGGATCAAACAGAAATGGATAAAGTGAATGTCGATTTGGCGGCG < SRR4302543.3429597/94‑1 (MQ=60)
TTGCCCGCGAATGACGAGGAGATTAAGAATGCTGAAGAAGCTGGCTAAACTGGATCAAACAGAAATGGATAAAGTGAATGTCGATTTGGCGGCG < SRR4302543.1621277/94‑1 (MQ=60)
GCCCGCGAATGACGAGGAGATTAAGAATGCTGAAGAATCTGGCTAAACTGGATCAAACAGAAATGGATAAAGTGAATGTCGATTTGGCGGCGGC < SRR4302543.1315253/94‑1 (MQ=60)
CCCGCGAATGACGAGGAGATTAAGAATGCTGAAGAATCTGGCTAAACTGGATCAAACAGAAATGGATAAAGTGAATGTCGATTTGGCGGCGGCC > SRR4302543.5301339/1‑94 (MQ=60)
CGCGAATGACGAGGAGATTAAGAATGCTGAAGAATCTGGCTAAACTGGATCAAACAGAAATGGATAAAGTGAATGTCGATTTGGCGGCGGCCGG > SRR4302543.1596171/1‑94 (MQ=60)
GCGAATGACGAGGAGATTAAGAATGCTGAAGAATCTGGCTAAACTGGATCAAACAGAAATGGATAAAGTGAATGTCGATTTGGCGGCGGCCGGG > SRR4302543.2048352/1‑94 (MQ=60)
CGAATGACGAGGAGATTAAGAATGCTGAAGAATCTGGCTAAACTGGATCAAACAGAAATGGATAAAGTGAATGTCGATTTGGCGGCGGCCGGGG < SRR4302543.6980915/94‑1 (MQ=60)
GAATGACGAGGAGATTAAGAATGCTGAAGAATCTGGCTAAACTGGATCAAACAGAAATGGATAAAGTGAATGTCGATTTGGCGGCGGCCGGGGT < SRR4302543.5774535/94‑1 (MQ=60)
AATGACGAGGAGATTAAGAATGCTGAAGAATCTGGCTAAACTGGATCAAACAGAAATGGATAAAGTGAATGTCGATTTGGCGGCGGCCGGGGTG < SRR4302543.6826844/94‑1 (MQ=60)
AATGACGAGGAGATTAAGAATGCTGAAGAATCTGGCTAAACTGGATCAAACAGAAATGGATAAAGTGAATGTCGATTTGGCGGCGGCCGGGGTG < SRR4302543.7863845/94‑1 (MQ=60)
ATGACGAGGAGATTAAGAATGCTGAAGAATCTGGCTAAACTGGATCAAACAGAAATGGATAAAGTGAATGTCGATTTGGCGGCGGCCGGGGTGG > SRR4302543.2684499/1‑94 (MQ=60)
ATGACGAGGAGATTAAGAATGCTGAAGAATCTGGCTAAACTGGATCAAACAGAAATGGATAAAGTGAATGTCGATTTGGCGGCGGCCGGGGTGG < SRR4302543.1062250/94‑1 (MQ=60)
GACGAGGAGATTAAGAATGCTGAAGAATCTGGCTAAACTGGATCAAACAGAAATGGATAAAGTGAATGTCGATTTGGCGGCGGCCGGGGTGGCA < SRR4302543.1689958/94‑1 (MQ=60)
CGAGGAGATTAAGAATGCTGAAGAATCTGGCTAAACTGGATCAAACAGAAATGGATAAAGTGAATGTCGATTTGGCGGCGGCCGGGGTGGCATT > SRR4302543.4546653/1‑94 (MQ=60)
CGAGGAGATTAAGAATGCTGAAGAATCTGGCTAAACTGGATCAAACAGAAATGGATAAAGTGAATGTCGATTTGGCGGCGGCCGGGGTGGCATT < SRR4302543.5668160/94‑1 (MQ=60)
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ACAGAGCATAACCTTGTCTAATGTCTGAGTCGAGGATCATCAATTCCGGCTTGCCATCCTGGCTCACTCTTAGTAACTTTTGCCCGCGAATGATGAGGAGATTAAGAATGCTGAAGAATCTGGCTAAACTGGATCAAACAGAAATGGATAAAGTGAATGTCGATTTGGCGGCGGCCGGGGTGGCATT > NC_000913/1923025‑1923211
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| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
