Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
1873 |
183.1 |
9376148 |
98.2% |
9207377 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
1,920,485 |
T→C |
E170G (GAA→GGA) |
b1838 ← |
protein phosphatase 1 |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 1,920,485 | 0 | T | C | 100.0%
| 384.5
/ NA
| 123 | E170G (GAA→GGA) | b1838 | protein phosphatase 1 |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (62/61); total (62/61) |
Only 100 of 125 total aligned reads displayed.
GCAGGTTGCCAATATCCACGCGATGTCGCAACGGTGTATGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTTCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTCATAAACATCATCTGGATAATCGGCATGAGC > NC_000913/1920396‑1920573
|
gCAGGTTGCCAATATCCACGCGATGTCGCAACGGTGTATGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCAc > 1:1202888/1‑93 (MQ=255)
gCAGGTTGCCAATATCCACGCGATGTCGCAACGGTGTATGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCAc < 1:2215339/93‑1 (MQ=255)
ttGCCAATATCCACGCGATGTCGCAACGGTGTATGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAAt < 2:392847/93‑1 (MQ=255)
tGCCAATATCCACGCGATGTCGCAACGGTGTATGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATc < 1:1432296/93‑1 (MQ=255)
tGCCAATATCCACGCGATGTCGCAACGGTGTATGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATc < 2:393849/93‑1 (MQ=255)
gCCAATATCCACGCGATGTCGCAACGGTGTATGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATcg < 1:368314/93‑1 (MQ=255)
gCCAATATCCACGCGATGTCGCAACGGTGTATGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATcg < 1:640226/93‑1 (MQ=255)
cAATATCCACGCGATGTCGCAACGGTGTATGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATcgcg > 2:405741/1‑93 (MQ=255)
cAATATCCACGCGATGTCGCAACGGTGTATGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATcgcg > 1:3971361/1‑93 (MQ=255)
cAATATCCACGCGATGTCGCAACGGTGTATGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATcgcg > 1:4522062/1‑93 (MQ=255)
aaTATCCACGCGATGTCGCAACGGTGTATGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGTCGTCCACCTAATCGCGa > 1:3600959/1‑93 (MQ=255)
aaTATCCACGCGATGTCGCAACGGTGTATGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGa < 2:3233249/93‑1 (MQ=255)
aaTATCCACGCGATGTCGCAACGGTGTATGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGa < 1:1192334/93‑1 (MQ=255)
aaTATCCACGCGATGTCGCAACGGTGTATGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGa > 2:3983353/1‑93 (MQ=255)
tatCCACGCGATGTCGCAACGGTGTATGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGc > 2:3946296/1‑93 (MQ=255)
tatCCACGCGATGTCGCAACGGTGTATGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGc < 1:2820469/93‑1 (MQ=255)
tatCCACGCGATGTCGCAACGGTGTATGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGc > 1:653844/1‑93 (MQ=255)
atCCACGCGATGTCGCAACGGTGTATGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCg < 1:3998253/93‑1 (MQ=255)
tCCACGCGATGTCGCAACGGTGTATGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCgg > 1:1017953/1‑93 (MQ=255)
cACGCGATGTCGCAACGGTGTATGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCt > 1:287342/1‑93 (MQ=255)
aCGCGATGTCGCAACGGTGTATGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTc > 1:4005207/1‑93 (MQ=255)
aCGCGATGTCGCAACGGTGTATGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTc < 2:549082/93‑1 (MQ=255)
aCGCGATGTCGCAACGGTGTATGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTc > 1:2495821/1‑93 (MQ=255)
aCGCGATGTCGCAACGGTGTATGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCACTTTTTGGCGTCCACCTAATCGCGAGCGGCta > 2:3008404/1‑92 (MQ=255)
gcgATGTCGCAACGGTGTATGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTccc > 1:2661033/1‑92 (MQ=255)
aTGTCGCAACGGTGTATGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACaa > 1:3473057/1‑93 (MQ=255)
aTGTCGCAACGGTGTATGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACaa < 2:1062094/93‑1 (MQ=255)
gTCGCAACGGTGTATGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGa < 2:1428189/93‑1 (MQ=255)
tCGCAACGGTGTATGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGAc > 1:3371942/1‑93 (MQ=255)
tCGCAACGGTGTATGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGAc > 1:2325808/1‑93 (MQ=255)
gCAACGGTGTATGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCt > 1:2392574/1‑93 (MQ=255)
aCGGTGTATGACCAAACCAGACGTGATCAGCTCCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGAt < 2:306460/93‑1 (MQ=255)
aCGGTGTATGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGAt < 1:1123013/93‑1 (MQ=255)
aCGGTGTATGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGAt < 2:58487/93‑1 (MQ=255)
gtgtATGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCa > 2:4027279/1‑93 (MQ=255)
gtgtATGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCa > 1:588691/1‑93 (MQ=255)
gtATGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCaaa > 1:309183/1‑93 (MQ=255)
aTGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATc < 2:3197863/93‑1 (MQ=255)
tGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCa > 1:214601/1‑93 (MQ=255)
tGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCa > 1:2188641/1‑93 (MQ=255)
gACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCaa > 2:3865612/1‑93 (MQ=255)
gACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCaa < 1:801658/93‑1 (MQ=255)
aCCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAAc < 1:3848570/93‑1 (MQ=255)
ccAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACg < 2:2704549/93‑1 (MQ=255)
cAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGt < 1:2410208/93‑1 (MQ=255)
cAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGt > 2:2095384/1‑93 (MQ=255)
cAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGt < 2:3176993/93‑1 (MQ=255)
aaaCCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTc < 2:4116191/93‑1 (MQ=255)
aaaCCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTc < 1:3108743/93‑1 (MQ=255)
aaCCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTcc < 2:320392/93‑1 (MQ=255)
aaCCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTcc > 1:3269028/1‑93 (MQ=255)
aCCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCt < 2:4610510/93‑1 (MQ=255)
ccAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCtt > 1:2813274/1‑93 (MQ=255)
cAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCttt < 1:2912890/93‑1 (MQ=255)
cgAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCtttt < 1:4619199/92‑1 (MQ=255)
aGACATAATCAGCACCTGTAATTCCCTGCCCTTTGTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCtttt < 2:4380881/93‑1 (MQ=255)
tGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCAt > 1:3807980/1‑93 (MQ=255)
cAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTCAt > 2:4287156/1‑93 (MQ=255)
cAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTCAt > 2:1284723/1‑93 (MQ=255)
aGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTCATa < 1:1233391/93‑1 (MQ=255)
gCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTCATaa < 1:2157030/93‑1 (MQ=255)
gCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTCATaa < 1:1534337/93‑1 (MQ=255)
ccTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTCATAAAca < 2:3402856/93‑1 (MQ=255)
ccTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTCATAAAca > 2:1386064/1‑93 (MQ=255)
cTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTCATAAAcat < 1:374499/93‑1 (MQ=255)
cTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTCATAAAcat > 2:2325815/1‑93 (MQ=255)
tGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTCATAAAcatc < 1:3704899/93‑1 (MQ=255)
tAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTCATAAAcatcat > 1:1621062/1‑93 (MQ=255)
taTTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTCATAAACatcatc < 1:3915313/92‑1 (MQ=255)
aaTTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTCATAAACatcatc < 2:2195981/93‑1 (MQ=255)
aTTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTCATAAACATCATCt > 2:1913360/1‑93 (MQ=255)
aTTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTCATAAACATCATCt < 1:4515125/93‑1 (MQ=255)
ttCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTCATAAACATCATCTg < 1:1240702/93‑1 (MQ=255)
ttCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTCATAAACATCATCTg < 1:3050388/93‑1 (MQ=255)
cccTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTCATAAACATCATCTGGa < 2:746736/93‑1 (MQ=255)
cccTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTCATAAACATCATCTGGa < 2:22890/93‑1 (MQ=255)
cccTGACCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTCATAAACATCATCTGGa < 2:1584924/93‑1 (MQ=255)
ccTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTCATAAACATCATCTGGAt > 2:1474367/1‑93 (MQ=255)
tGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTCATAAACATCATCTGGATaa < 2:2565113/93‑1 (MQ=255)
tGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTCATAAACATCATCTGGATaa > 1:987777/1‑93 (MQ=255)
tGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTCATAAACATCATCTGGATaa < 1:1868127/93‑1 (MQ=255)
tGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGACCTTTTGCCATTCATAAACATCATCTGGATaa > 1:836451/1‑93 (MQ=255)
cccTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTCATAAACATCATCTGGATAATc > 2:2538499/1‑93 (MQ=255)
cccTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTCATAAACATCATCTGGATAATc < 1:2457800/93‑1 (MQ=255)
ccTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTCATAAACATCATCTGGATAATCg < 2:2566768/93‑1 (MQ=255)
ccTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTCATAAACATCATCTGGATAATCg < 1:3155678/93‑1 (MQ=255)
cTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTCATAAACATCATCTGGATAATCgg > 2:2369801/1‑93 (MQ=255)
cTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTCATAAACATCATCTGGATAATCgg > 2:233368/1‑93 (MQ=255)
cTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTCATAAACATCATCTGGATAATCgg > 1:1610278/1‑93 (MQ=255)
cTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGAACTGATGCAAATCAACGTCCTTTTGCCATTCATAAACATCATCTGGATCATTgg > 2:3036615/1‑93 (MQ=255)
tttttGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTCATAAACATCATCTGGATAATCGGc > 1:1081795/1‑93 (MQ=255)
ttttGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTCATAAACATCATCTGGATAATCGGCa < 1:2415173/93‑1 (MQ=255)
ttttGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTCATAAACATCATCTGGATAATCGGCa > 1:2953262/1‑93 (MQ=255)
tttGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTCATAAACATCATCTGGATAATCGGCAt < 1:4629591/93‑1 (MQ=255)
tttGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTCATAAACATCATCTGGATAATCGGCAt < 1:1125255/93‑1 (MQ=255)
tGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTCATAAACATCATCTGGATAATCGGCATGa < 1:1794642/93‑1 (MQ=255)
ggCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTCATAAACATCATCTGGATAATCGGCATGAg < 1:2709111/93‑1 (MQ=255)
ggCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTCATAAACATCATCTGGATAATCGGCATGAg < 2:2431532/93‑1 (MQ=255)
gCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTCATAAACATCATCTGGATAATCGGCATGAGc < 2:4317213/93‑1 (MQ=255)
gCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTCATAAACATCATCTGGATAATCGGCATGAGc > 2:4354447/1‑93 (MQ=255)
|
GCAGGTTGCCAATATCCACGCGATGTCGCAACGGTGTATGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTTCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTCATAAACATCATCTGGATAATCGGCATGAGC > NC_000913/1920396‑1920573
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
TAATGCAGGTTGCCAATATCCACGCGATGTCGCAACGGTGTATGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTTCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTCATAAACATCATCTGGATAATCGGCATGAGCAATAA > NC_000913/1920392‑1920578
|
TAATGCAGGTTGCCAATATCCACGCGATGTCGCAACGGTGTATGACCAAACCAGAAATGATCAGCACCTGTAATTACCTGCCCTTTTTGGCGTC > SRR4302535.447051/1‑94 (MQ=60)
ATGCAGGTTACCAATATCCACGCGATGTCGCAACGGTGTATGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCA < SRR4302535.476755/94‑1 (MQ=60)
TGCAGGTTGCCAATATCCACGCGATGTCGCAACGGTGTATGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCAC > SRR4302535.1211523/1‑94 (MQ=60)
GCAGGTTGCCAATATCCACGCGATGTCGCAACGGTGTATGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACC < SRR4302535.2231114/94‑1 (MQ=60)
CAGGTTGCCAATATCCACGCGATGTCGCAACGGTGTATGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCT < SRR4302535.4442768/94‑1 (MQ=60)
TGCCAATATCCACGCGATGTCGCAACGGTGTATGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCG < SRR4302535.1442522/94‑1 (MQ=60)
TGCCAATATCCACGCGATGTCGCAACGGTGTATGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCG > SRR4302535.3357308/1‑94 (MQ=60)
GCCAATATCCACGCGATGTCGCAACGGTGTATGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGC < SRR4302535.370857/94‑1 (MQ=60)
GCCAATATCCACGCGATGTCGCAACGGTGTATGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGC < SRR4302535.644699/94‑1 (MQ=60)
CCAATATCCACGCGATGTCGCAACGGTGTATGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCG > SRR4302535.4553050/1‑94 (MQ=60)
CCAATATCCACGCGATGTCGCAACGGTGTATGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCG > SRR4302535.3998485/1‑94 (MQ=60)
CAATATCCACGCGATGTCGCAACGGTGTATGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGTCGTCCACCTAATCGCGA > SRR4302535.3625946/1‑94 (MQ=60)
AATATCCACGCGATGTCGCAACGGTGTATGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAG < SRR4302535.1200874/94‑1 (MQ=60)
ATATCCACGCGATGTCGCAACGGTGTATGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGC > SRR4302535.658410/1‑94 (MQ=60)
TATCCACGCGATGTCGCAACGGTGTATGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCG < SRR4302535.2840502/94‑1 (MQ=60)
ATCCACGCGATGTCGCAACGGTGTATGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGG < SRR4302535.4025608/94‑1 (MQ=60)
ATCCACGCGATGTCGCAACGGTGTATGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGG > SRR4302535.1025188/1‑94 (MQ=60)
CCACGCGATGTCGCAACGGTGTATGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCT > SRR4302535.289355/1‑94 (MQ=60)
CACGCGATGTCGCAACGGTGTATGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTC > SRR4302535.4032605/1‑94 (MQ=60)
CACGCGATGTCGCAACGGTGTATGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTC > SRR4302535.2513828/1‑94 (MQ=60)
CGCGATGTCGCAACGGTGTATGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCC > SRR4302535.2680093/1‑94 (MQ=60)
GATGTCGCAACGGTGTATGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAA > SRR4302535.3497189/1‑94 (MQ=60)
GTCGCAACGGTGTATGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGAC > SRR4302535.2342448/1‑94 (MQ=60)
GTCGCAACGGTGTATGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGAC > SRR4302535.3395400/1‑94 (MQ=60)
CGCAACGGTGTATGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCT > SRR4302535.813602/1‑94 (MQ=60)
CGCAACGGTGTATGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCT > SRR4302535.2409773/1‑94 (MQ=60)
ACGGTGTATGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATG < SRR4302535.1131027/94‑1 (MQ=60)
GGTGTATGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCA > SRR4302535.592819/1‑94 (MQ=60)
GTGTATGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAA > SRR4302535.2181943/1‑94 (MQ=60)
TGTATGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAA > SRR4302535.311328/1‑94 (MQ=60)
ATGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCA > SRR4302535.216071/1‑94 (MQ=60)
ATGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCA > SRR4302535.2204228/1‑94 (MQ=60)
GACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAAC < SRR4302535.807290/94‑1 (MQ=60)
ACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACG < SRR4302535.3875059/94‑1 (MQ=60)
ACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACG > SRR4302535.3717841/1‑94 (MQ=60)
CAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTC < SRR4302535.2427559/94‑1 (MQ=60)
AAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCC < SRR4302535.3130386/94‑1 (MQ=60)
AAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCC > SRR4302535.3291737/1‑94 (MQ=60)
ACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTT > SRR4302535.2833268/1‑94 (MQ=60)
CAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTT < SRR4302535.2933469/94‑1 (MQ=60)
CGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTG < SRR4302535.4650586/94‑1 (MQ=60)
ATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCAT > SRR4302535.3834245/1‑94 (MQ=60)
ATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTCA < SRR4302535.1694018/94‑1 (MQ=60)
AGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTCATAA < SRR4302535.1242210/94‑1 (MQ=60)
GCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTCATAAA < SRR4302535.2172527/94‑1 (MQ=60)
GCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTCATAAA < SRR4302535.1545390/94‑1 (MQ=60)
CCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTCATAAACAT < SRR4302535.2645395/94‑1 (MQ=60)
CCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTCATAAACAT > SRR4302535.1333847/1‑94 (MQ=60)
CCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTCATAAACAT > SRR4302535.310685/1‑94 (MQ=60)
CTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTCATAAACATC < SRR4302535.377089/94‑1 (MQ=60)
TGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTCATAAACATCA < SRR4302535.3730558/94‑1 (MQ=60)
GTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTCATAAACATCAT > SRR4302535.1632758/1‑94 (MQ=60)
TATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTCATAAACATCATCT < SRR4302535.3942105/94‑1 (MQ=60)
AATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTCATAAACATCATCT > SRR4302535.288015/1‑94 (MQ=60)
ATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTCATAAACATCATCTG < SRR4302535.4546082/94‑1 (MQ=60)
TTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTCATAAACATCATCTGG < SRR4302535.3071755/94‑1 (MQ=60)
TTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTCATAAACATCATCTGG < SRR4302535.1249561/94‑1 (MQ=60)
CCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTCATAAACATCATCTGGAT > SRR4302535.569530/1‑94 (MQ=60)
CTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTCATAAACATCATCTGGATAA > SRR4302535.994795/1‑94 (MQ=60)
CTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGACCTTTTGCCATTCATAAACATCATCTGGATAA > SRR4302535.842319/1‑94 (MQ=60)
TGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTCATAAACATCATCTGGATAAT < SRR4302535.1881590/94‑1 (MQ=60)
TGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTCATAAACATCATCTGGATAAT > SRR4302535.2423436/1‑94 (MQ=60)
GCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTCATAAACATCATCTGGATAATG > SRR4302535.1169430/1‑94 (MQ=60)
CCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTCATAAACATCATCTGGATAATCG < SRR4302535.2475527/94‑1 (MQ=60)
CCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTCATAAACATCATCTGGATAATCGG > SRR4302535.3887381/1‑94 (MQ=60)
CCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTCATAAACATCATCTGGATAATCGG > SRR4302535.1621884/1‑94 (MQ=60)
CCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTCATAAACATCATCTGGATAATCGG < SRR4302535.3177595/94‑1 (MQ=60)
CTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTCATAAACATCATCTGGATAATCGGC > SRR4302535.1089487/1‑94 (MQ=60)
TTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTCATAAACATCATCTGGATAATCGGCA > SRR4302535.2974010/1‑94 (MQ=60)
TTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTCATAAACATCATCTGGATAATCGGCAT < SRR4302535.2432559/94‑1 (MQ=60)
TTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTCATAAACATCATCTGGATAATCGGCATG < SRR4302535.4661007/94‑1 (MQ=60)
TTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTCATAAACATCATCTGGATAATCGGCATG < SRR4302535.1133288/94‑1 (MQ=60)
TGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTCATAAACATCATCTGGATAATCGGCATGAG < SRR4302535.1807616/94‑1 (MQ=60)
GGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTCATAAACATCATCTGGATAATCGGCATGAGC < SRR4302535.2728474/94‑1 (MQ=60)
CGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTCATAAACATCATCTGGATAATCGGCATGAGCAA > SRR4302535.2475671/1‑94 (MQ=60)
TCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTCATAAACATCATCTGGATAATCGGCATGAGCAATA < SRR4302535.2030230/94‑1 (MQ=60)
TCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTCATAAACATCATCTGGATAATCGGCATGAGCAATA > SRR4302535.816360/1‑94 (MQ=60)
CCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTCATAAACATCATCTGGATAATCGGCATGAGCAATAA > SRR4302535.364971/1‑94 (MQ=60)
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TAATGCAGGTTGCCAATATCCACGCGATGTCGCAACGGTGTATGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTTCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTCATAAACATCATCTGGATAATCGGCATGAGCAATAA > NC_000913/1920392‑1920578
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
