Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I1 R1 1696 279.3 15874187 97.8% 15524954 93.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 1,926,936 A→G intergenic (‑73/+136) ptrB ← / ← yebE protease II/hypothetical protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009131,926,9360AG99.6% 714.5 / NA 229intergenic (‑73/+136)ptrB/yebEprotease II/hypothetical protein
Reads supporting (aligned to +/- strand):  ref base A (0/0);  major base G (92/136);  minor base T (0/1);  total (92/137)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 238 total aligned reads displayed.

GGCGGCTTTTGGTAGCATGTTATTGTTCTTTCTGGTTGAAACATCTTATAAGGGTGGCAAAACTCACCGGGGATGCAAGCGAAACAGGGGAGTCATTGCTTAGATGATGACAGGTAATGGCGCGGATATCGAATGTTATGCAGACAGAGAAAATCAGCCTGTTCAAATGGCTGTGCGATT  >  NC_000913/1926846‑1927025
                                                                                          |                                                                                         
  cggcTTTTGGTAGCATGTTATTGTTCTTTCTGGTTGAAACATCTTATAAGGGTGGCAAAACTCACCGGGGATGCAAGCGAAACAGGGGGGTCa                                                                                       <  1:4536113/93‑1 (MQ=255)
   gacTTTTGGTAGCATGTTATTGTTCTTTCTGGTTGAAACATCTTATAAGGGTGGCAAAACTCACCGGGGATGCAAGCGAAACAGGGGGGTCAt                                                                                      <  2:231503/91‑1 (MQ=255)
      ttttGGTAGCATGTTATTGTTCTTTCTGGTTGAAACATCTTATAAGGGTGGCAAAACTCACCGGGGATGCAAGCGAAACAGGGGGGTCATTGc                                                                                   >  2:7348314/1‑93 (MQ=255)
      ttttGGTAGCATGTTATTGTTCTTTCTGGTTGAAACATCTTATAAGGGTGGCAAAACTCACCGGGGATGCAAGCGAAACAGGGGGGTCATTGc                                                                                   >  1:2945566/1‑93 (MQ=255)
       tttGGTAGCATGTTATTGTTCTTTCTGGTTGAAACATCTTATAAGGGTGGCAAAACTCACCGGGGATGCAAGCGAAACAGGGGGGTCATTGCt                                                                                  <  2:1434904/93‑1 (MQ=255)
           gTAGCATGTTATTGTTCTTTCTGGTTGAAACATCTTATAAGGGTGGCAAAACTCACCGGGGATGCAAGCGAAACAGGGGGGTCATTGCTTAga                                                                              <  1:4263601/93‑1 (MQ=255)
           gTAGCATGTTATTGTTCTTTCTGGTTGAAACATCTTATAAGGGTGGCAAAACTCACCGGGGATGCAAGCGAAACAGGGGGGTCATTGCTTAga                                                                              <  2:2319191/93‑1 (MQ=255)
            tAGCATGTTATTGTTCTTTCTGGTTTAAACATCTTATAAGGGTGGCAAAACTCACCGGGGATGCAAGCGAAACAGGGGGGTCATTGCTTAgat                                                                             <  1:6542156/93‑1 (MQ=255)
              gCATGTTATTGTTCTTTCTGGTTGAAACATCTTATAAGGGTGGCAAAACTCACCGGGGATGCAAGCGAAACAGGGGGGTCATTGCTTAgatga                                                                           <  1:5523641/93‑1 (MQ=255)
              gCATGTTATTGTTCTTTCTGGTTGAAACATCTTATAAGGGTGGCAAAACTCACCGGGGATGCAAGCGAAACAGGGGGGTCATTGCTTAgatga                                                                           >  1:3154898/1‑93 (MQ=255)
              gCATGTTATTGTTCTTTCTGGTTGAAACATCTTATAAGGGTGGCAAAACTCACCGGGGATGCAAGCGAAACAGGGGGGTCATTGCTTAgatga                                                                           >  2:1782185/1‑93 (MQ=255)
               cATGTTATTGTTCTTTCTGGTTGAAACATCTTATAAGGGTGGCAAAACTTACCGGGGATGCAAGCGATACAGGGGGGTCAGTGCTTAgatgat                                                                          >  2:7035172/1‑93 (MQ=255)
                aTGTTATTGTTCTTTCTGGTTGAAACATCTTATAAGGGTGGCAAAACTCACCGGGGATGCAAGCGAAACAGGGGGGTCATTGCTTAGatgatg                                                                         >  2:6006570/1‑93 (MQ=255)
                aTGTTATTGTTCTTTCTGGTTGAAACATCTTATAAGGGTGGCAAAACTCACCGGGGATGCAAGCGAAACAGGGGGGTCATTGCTTAGatgatg                                                                         >  1:105658/1‑93 (MQ=255)
                 tGTTATTGTTCTTTCTGGTTGAAACATCTTATAAGGGTGGCAAAACTCACCGGGGATGCAAGCGAAACAGGGGGGTCATTGCTTAGAtgatga                                                                        <  1:6936817/93‑1 (MQ=255)
                 tGTTATTGTTCTTTCTGGTTGAAACATCTTATAAGGGTGGCAAAACTCACCGGGGATGCAAGCGAAACAGGGGGGTCATTGCTTAGAtgatga                                                                        >  2:5031642/1‑93 (MQ=255)
                 tGTTATTGTTCTTTCTGGTTGAAACATCTTATAAGGGTGGCAAAACTCACCGGGGATGCAAGCGAAACAGGGGGGTCATTGCTTAGAtgatga                                                                        <  1:2714454/93‑1 (MQ=255)
                 tGTTATTGTTCTTTCTGGTTGAAACATCTTATAAGGGTGGCAAAACTCACCGGGGATGCAAGCGAAACAGGGGGGGCATTGCTTAGAtgatga                                                                        >  2:409187/1‑93 (MQ=255)
                  gTTATTGTTCTTTCTGGTTGAAACATCTTATAAGGGTGGCAAAACTCACCGGGGATGCAAGCGAAACAGGGGGGTCATTGCTTAGATGATGAc                                                                       >  2:206949/1‑93 (MQ=255)
                  gTTATTGTTCTTTCTGGTTGAAACATCTTATAAGGGTGGCAAAACTCACCGGGGATGCAAGCGAAACAGGGGGGTCATTGCTTAGATGATGAc                                                                       >  1:4952305/1‑93 (MQ=255)
                   ttATTGTTCTTTCTGGTTGAAACATCTTATAAGGGTGGCAAAACTCACCGGGGATGCAAGCGAAACAGGGGGGTCATTGCTTAGATGATGACa                                                                      <  1:409798/93‑1 (MQ=255)
                    tATTGTTCTTTCTGGTTGAAACATCTTATAAGGGTGGCAAAACTCACCGGGGATGCAAGCGAAACAGGGGGGTCATTGCTTAGATGATGACAg                                                                     >  1:4770821/1‑93 (MQ=255)
                    tATTGTTCTTTCTGGTTGAAACATCTTATAAGGGTGGCAAAACTCACCGGGGATGCAAGCGAAACAGGGGGGTCATTGCTTAGATGATGACAg                                                                     >  2:6726310/1‑93 (MQ=255)
                    tATTGTTCTTTCTGGTTGAAACATCTTATAAGGGTGGCAAAACTCACCGGGGATGCAAGCGAAACAGGGGGGTCATTGCTTAGATGATGACAg                                                                     >  1:2534984/1‑93 (MQ=255)
                      ttGTTCTTTCTGGTTGAAACATCTTATAAGGGTGGCAAAACTCACCGGGGATGCAAGCGAAACAGGGGGGTCATTGCTTAGATGATGACAGGt                                                                   >  1:648390/1‑93 (MQ=255)
                      ttGTTCTTTCTGGTTGAAACATCTTATAAGGGTGGCAAAACTCACCGGGGATGCAAGCGAAACAGGGGGGTCATTGCTTAGATGATGACAGGt                                                                   >  1:7160456/1‑93 (MQ=255)
                         ttctttctGGTTGAAACATCTTATAAGGGTGGCAAAACTCACCGGGGATGCAAGCGAAACAGGGGGGTCATTGCTTAGATGATGACAGGTAAt                                                                <  1:7492178/93‑1 (MQ=255)
                           ctttctGGTTGAAACATCTTATAAGGGTGGCAAAACTCGCCGGGGATGCAAGCGAAACAGGGGGGTCATGGCTTAGATGATGACAGGTAATgg                                                              <  1:1142873/93‑1 (MQ=255)
                           ctttctGGTTGAAACATCTTATAAGGGTGGCAAAACTCACCGGGGATGCAAGCGAAACAGGGGGGTCATTGCTTAGATGATGACAGGTAATgg                                                              <  1:4042624/93‑1 (MQ=255)
                            tttctGGTTGAAACATCTTATAAGGGTGGCAAAACTCACCGGGGATGCAAGCGAAACAGGGGGGTCATTGCTTAGATGATGACAGGTAATGgc                                                             >  1:3520753/1‑93 (MQ=255)
                            tttctGGTTGAAACATCTTATAAGGGTGGCAAAACTCACCGGGGATGCAAGCGAAACAGGGGGGTCATTGCTTAGATGATGACAGGTAATGgc                                                             <  1:804717/93‑1 (MQ=255)
                                tGGTTGAAACATCTTATAAGGGTGGCAAAACTCACCGGGGATGCAAGCGAAACAGGGGGGTCATTGCTTAGATGATGACAGGTAATGGCGCgg                                                         >  1:4659964/1‑93 (MQ=255)
                                tGGTTGAAACATCTTATAAGGGTGGCAAAACTCACCGGGGATGCAAGCGAAACAGGGGGGTCATTGCTTAGATGATGACAGGTAATGGCGCgg                                                         >  1:3828846/1‑93 (MQ=255)
                                tGGTTGAAACATCTTATAAGGGTGGCAAAACTCACCGGGGATGCAAGCGAAACAGGGGGGTCATTGCTTAGATGATGACAGGTAATGGCGCgg                                                         <  2:5166987/93‑1 (MQ=255)
                                tGGTTGAAACATCTTATAAGGGTGGCAAAACTCACCGGGGATGCAAGCGAAACAGGGGGGTCATTGCTTAGATGATGACAGGTAATGGCGCgg                                                         >  2:6860050/1‑93 (MQ=255)
                                 ggTTGAAACATCTTATAAGGGTGGCAAAACTCACCGGGGATGCAAGCGAAACAGGGGGGTCATTGCTTAGATGATGACAGGTAATGGCGCGGa                                                        <  2:262381/93‑1 (MQ=255)
                                 ggTTGAAACATCTTATAAGGGTGGCAAAACTCACCGGGGATGCAAGCGAAACAGGGGGGTCATTGCTTAGATGATGACAGGTAATGGCGCGGa                                                        >  2:3145781/1‑93 (MQ=255)
                                 ggTTGAAACATCTTATAAGGGTGGCAAAACTCACCGGGGATGCAAGCGAAACAGGGGGGTCATTGCTTAGATGATGACAGGTAATGGCGCGGa                                                        <  1:2825892/93‑1 (MQ=255)
                                 ggTTGAAACATCTTATAAGGGTGGCAAAACTCACCGGGGATGCAAGCGAAACAGGGGGGTCATTGCTTAGATGATGACAGGTAATGGCGCGGa                                                        <  2:4219443/93‑1 (MQ=255)
                                  gTTGAAACATCTTATAAGGGTGGCAAAACTCACCGGGGATGCAAGCGAAACAGGGGGGTCATTGCTTAGATGATGACAGGTAATGGCGCGGat                                                       <  1:5850940/93‑1 (MQ=255)
                                   ttGAAACATCTTATAAGGGTGGCAAAACTCACCGGGGATGCAAGCGAAACAGGGGGGTCATTGCTTAGATGATGACAGGTAATGGCGCGGata                                                      <  2:6667243/93‑1 (MQ=255)
                                   ttGAAACATCTTATAAGGGTGGCAAAACTCACCGGGGATGCAAGCGAAACAGGGGGGTCATTGCTTAGATGATGACAGGTAATGGCGCGGata                                                      <  2:6995724/93‑1 (MQ=255)
                                   ttGAAACATCTTATAAGGGTGGCAAAACTCACCGGGGATGCAAGCGAAACAGGGGGGTCATTGCTTAGATGATGACAGGTAATGGCGCGGata                                                      <  2:1244667/93‑1 (MQ=255)
                                   ttGAAACATCTTATAAGGGTGGCAAAACTCACCCGGGATGCAAGCGAAACAGAGGGGCCACTGCTTAGATGATGATAGGAAATGGCGCGGata                                                      >  2:5549623/1‑93 (MQ=255)
                                     gAAACATCTTATAAGGGTGGCAAAACTCACCGGGGATGCAAGCGAAACAGGGGGGTCATTGCTTAGATGATGACAGGTAATGGCGCGGATATc                                                    <  1:7117001/93‑1 (MQ=255)
                                      aaaCATCTTATAAGGGTGGCAAAACTCACCGGGGATGCAAGCGAAACAGGGGGGTCATTGCTTAGATGATGACAGGTAATGGCGCGGATATCg                                                   <  2:727932/93‑1 (MQ=255)
                                       aaCATCTTATAAGGGTGGCAAAACTCACCGGGGATGCAAGCGAAACAGGGGGGTCATTGCTTAGATGATGACAGGTAATGGCGCGGATATCGa                                                  >  2:5346852/1‑93 (MQ=255)
                                        aCATCTTATAAGGGTGGCAAAACTCACCGGGGATGCAAGCGAAACAGGGGGGTCATTGCTTAGATGATGACAGGTAATGGCGCGGATATCGaa                                                 <  1:2104636/93‑1 (MQ=255)
                                        aCATCTTATAAGGGTGGCAAAACTCACCGGGGATGCAAGCGAAACAGGGGGGTCATTGCTTAGATGATGACAGGTAATGGCGCGGATATCGaa                                                 <  2:4810889/93‑1 (MQ=255)
                                        aCATCTTATAAGGGTGGCAAAACTCACCGGGGATGCAAGCGAAACAGGGGGGTCATTGCTTAGATGATGACAGGTAATGGCACGGATATCGaa                                                 >  2:3231303/1‑93 (MQ=255)
                                           tCTTATAAGGGTGGCAAAACTCACCGGGGATGCAAGCGAAACAGGGGGGTCATTGCTTAGATGATGACAGGTAATGGCGCGGATATCGAATGt                                              >  1:5368654/1‑93 (MQ=255)
                                            cTTATAAGGGTGGCAGAACTCACCGGGGATGCAAGCGAAACAGGGGGGTCATTGCTTAGATGATGACAGGTAATGGCGCGGATATCGAATGtt                                             <  2:4987443/93‑1 (MQ=255)
                                             ttATAAGGGTGGCAAAACTCACCGGGGATGCAAGCGAAACAGGGGGGTCATTGCTTAGATGATGACAGGTAATGGCGCGGATATCGAATGTTa                                            >  2:7753959/1‑93 (MQ=255)
                                             ttATAAGGGTGGCAAAACTCACCGGGGATGCAAGCGAAACAGGGGGGTCATTGCTTAGATGATGACAGGTAATGGCGCGGATATCGAATGTTa                                            <  2:762272/93‑1 (MQ=255)
                                             ttATAAGGGTGGCAAAACTCACCGGGGATGCAAGCGAAACAGGGGGGTCATTGCTTAGATGATGACAGGTAATGGCGCGGATATCGAATGTTa                                            <  1:2416166/93‑1 (MQ=255)
                                             ttATAAGGGTGGCAAAACTCACCGGGGATGCAAGCGAAACAGGGGGGTCATTGCTTAGATGATGACAGGTAATGGCGCGGATATCGAATGTTa                                            <  1:2460520/93‑1 (MQ=255)
                                              tataAGGGTGGCAAAACTCACCGGGGATGCAAGCGAAACAGGGGGGTCATTGCTTAGATGATGACAGGTAATGGCGCGGATATCGAATGTTAt                                           <  1:2315633/93‑1 (MQ=255)
                                               ataAGGGTGGCAAAACTCACCGGGGATGCAAGCGAAACAGGGGGGTCATTGCTTAGATGATGACAGGTAATGGCGCGGATATCGAATGTTATg                                          <  2:2739862/93‑1 (MQ=255)
                                                taAGGGTGGCAAAACTCACCGGGGATGCAAGCGAAACAGGGGGGTCATTGCTTAGATGATGACAGGTAATGGCGCGGATATCGAATGTTATGc                                         >  2:398382/1‑93 (MQ=255)
                                                taAGGGTGGCAAAACTCACCGGGGATGCAAGCGAAACAGGGGGGTCATTGCTTAGATGATGACAGGTAATGGCGCGGATATCGAATGTTATGc                                         <  2:537012/93‑1 (MQ=255)
                                                 aaGGGTGGCAAATGTCACCGGGGATGCAAGCGAAACAGGGGGGTCATTGCTTAGATGATGACAGGTAATGGCGCGGATATCGAATGTTATGca                                        <  1:630878/93‑1 (MQ=255)
                                                 aaGGGTGGCAAAACTCACCGGGGATGCAAGCGAAACAGGGGGGTCATTGCTTAGATGATGACAGGTAATGGCGCGGATATCGAATGTTATGca                                        >  1:1621456/1‑93 (MQ=255)
                                                 aaGGGTGGCAAAACTCACCGGGGATGCAAGCGAAACAGGGGGGTCATTGCTTAGATGATGACAGGTAATGGCGCGAATATCGAATGTTATGca                                        <  1:305277/93‑1 (MQ=255)
                                                  aGGGTGGCAAAACTCACCGGGGATGCAAGCGAAACAGGGGGGTCATTGCTTAGATGATGACAGGTAATGGCGCGGATATCGAATGTTATGcag                                       >  2:5680697/1‑93 (MQ=255)
                                                  aGGGTGGCAAAACTCACCGGGGATGCAAGCGAAACAGGGGGGTCATTGCTTAGATGATGACAGGTAATGGCGCGGATATCGAATGTTATGcag                                       <  2:5983029/93‑1 (MQ=255)
                                                  aGGGTGGCAAAACTCACCGGGGATGCAAGCGAAACAGGGGGGTCATTGCTTAGATGATGACAGGTAATGGCGCGGATATCGAATGTTATGcag                                       >  2:623624/1‑93 (MQ=255)
                                                     gTGGCAAAACTCACCGGGGATGCAAGCGAAACAGGGGGGTCATTGCTTAGATGATGACAGGTAATGGCGCGGATATCGAATGTTATGcagaca                                    >  2:7860601/1‑93 (MQ=255)
                                                     gTGGCAAAACTCACCGGGGATGCAAGCGAAACAGGGGGGTCATTGCTTAGATGATGACAGGTAATGGCGCGGATATCGAATGTTATGcagaca                                    <  1:314315/93‑1 (MQ=255)
                                                      tGGCAAAACTCACCGGGGATGCAAGCGAAACAGGGGGGTCATTGCTTAGATGATGACAGGTAATGGCGCGGATATCGAATGTTATGcagacag                                   >  2:1082052/1‑93 (MQ=255)
                                                          aaaaCTCACCGGGGATGCAAGCGAAACAGGGGGGTCATTGCTTAGATGATGACAGGTAATGGCGCGGATATCGAATGTTATGCAGACAGAGaa                               >  1:1690098/1‑93 (MQ=255)
                                                           aaaCTCACCGGGGATGCAAGCGAAACAGGGGGGTCATTGCTTAGATGATGACAGGTAATGGCGCGGATATCGAATGTTATGCAGACAGAGaaa                              >  2:6344731/1‑93 (MQ=255)
                                                           aaaCTCACCGGGGATGCAAGCGAAACAGGGGGGTCATTGCTTAGATGATGACAGGTAATGGCGCGGATATCGAATGTTATGCAGACAGAGaaa                              >  2:581038/1‑93 (MQ=255)
                                                              cTCACCGGGGATGCAAGCGAAACAGGGGGGTCATTGCTTAGATGATGACAGGTAATTGCGCGGATATCGAATGTTATGCAGACAGAGAAAAta                           >  1:3464685/1‑92 (MQ=255)
                                                              cTCACCGGGGATGCAAGCGAAACAGGGGGGTCATTGCTTAGATGATGACAGGTAATGGCGCGGATATCGAATGTTATGCAGACAGAGAAAATc                           >  2:2146344/1‑93 (MQ=255)
                                                               tCACCGGGGATGCAAGCGAAACAGGGGGGTCATTGCTTAGATGATGACAGGTAATGGCGCGGATATCGAATGTTATGCAGACAGAGAAAATCa                          <  2:2866545/93‑1 (MQ=255)
                                                               tCACCGGGGATGCAAGCGAAACAGGGGGGTCATTGCTTAGATGATGACAGGTAATGGCGCGGATATCGAATGTTATGCAGACAGAGAAAATCa                          >  2:7653992/1‑93 (MQ=255)
                                                               tCACCGGGGATGCAAGCGAAACAGGGGGGTCATTGCTTAGATGATGACAGGTAATGGCGCGGATATCGAATGTTATGCAGACAGAGAAAATCa                          <  1:1341282/93‑1 (MQ=255)
                                                                 aCCGGGGATGCAAGCGAAACAGGGGGGTCATTGCTTAGATGATGACAGGTAATGGCGCGGATATCGAATGTTATGCAGACAGAGAAAATCAGc                        <  2:6161461/93‑1 (MQ=255)
                                                                 aCCGGGGATGCAAGCGAAACAGGGGGGTCATTGCTTAGATGATGACAGGTAATGGCGCGGATATCGAATGTTATGCAGACAGAGAAAATCAGc                        >  1:489127/1‑93 (MQ=255)
                                                                  ccGGGGATGCAAGCGAAACAGGGGGGTCATTGCTTAGATGATGACAGGTAATGGCGCGGATATCGAATGTTATGCAGACAGAGAAAATCAGcc                       <  2:2258794/93‑1 (MQ=255)
                                                                   ccgggAAGCAAGCGGAACAGGGGGGTCATTGCTTAGATGATGACAGGTAATGGCGCGGATATCGAATGTTATGCAGACAGAGAAAATCAGCCt                      <  1:2753812/91‑1 (MQ=255)
                                                                   cGGGGATGCAAGCGAAACAGGGGGGTCATTGCTTAGATGATGACAGGTAATGGCGCGGATATCGAATGTTATGCAGACAGAGAAAATCAGCCt                      >  1:7709190/1‑93 (MQ=255)
                                                                   cGGGGATGCAAGCGAAACAGGGGGGTCATTGCTTAGATGATGACAGGTAATGGCGCGGATATCGAATGTTATGCAGACAGAGAAAATCAGCCt                      <  2:1333835/93‑1 (MQ=255)
                                                                   cGGGGATGCAAGCGAAACAGGGGGGTCATTGCTTAGATGATGACAGGTAATGGCGCGGATATCGAATGTTATGCAGACAGAGAAAATCAGCCt                      <  1:7393531/93‑1 (MQ=255)
                                                                       gATGCAAGCGAAACAGGGGGGTCATTGCTTAGATGATGACAGGTAATGGCGCGGATATCGAATGTTATGCAGACAGAGAAAATCAGCCTGTTc                  >  1:1504635/1‑93 (MQ=255)
                                                                          gCAAGCGAAACAGGGGTGTCATTGCTTAGATGATGACAGGTAATGGCGCGGATATCGAATGTTATGCAGACAGAGAAAATCAGCCTGTTCaaa               <  1:7741093/93‑1 (MQ=255)
                                                                          gCAAGCGAAACAGGGGGGTCATTGCTTAGATGATGACAGGTAATGGCGCGGATATCGAATGTTATGCAGACAGAGAAAATCAGCCTGTTCaaa               <  2:1940996/93‑1 (MQ=255)
                                                                          gCAAGCGAAACAGGGGGGTCATTGCTTAGATGATGACAGGTAATGGCGCGGATATCGAATGTTATGCAGACAGAGAAAATCAGCCTGTTCaaa               <  1:7833376/93‑1 (MQ=255)
                                                                          gCAAGCGAAACAGGGGGGTCATTGCTTAGATGATGACAGGTAATGGCGCGGATATCGAATGTTATGCAGACAGAGAAAATCAGCCTGTTCaaa               <  2:3459906/93‑1 (MQ=255)
                                                                           cAAGCGAAACAGGGGGGTCATTGCTTAGATGATGACAGGTAATGGCGCGGATATCGAATGTTATGCAGACAGAGAAAATCAGCCTGTTCAAAt              <  2:1822184/93‑1 (MQ=255)
                                                                           cAAGCGAAACAGGGGGGTCATTGCTTAGATGATGACAGGTAATGGCGCGGATATCGAATGTTATGCAGACAGAGAAAATCAGCCTGTTCAAAt              <  2:6556864/93‑1 (MQ=255)
                                                                            aaGCGAAACAGGGGGGTCATTGCTTAGATGATGACAGGTAATGGCGCGGATATCGAATGTTATGCAGACAGAGAAAATCAGCCTGTTCAAATg             <  1:2643045/93‑1 (MQ=255)
                                                                             aGCGAAACAGGGGGGTCATTGCTTAGATGATGACAGGTAATGGCGCGGATATCGAATGTTATGCAGACAGAGAAAATCAGCCTGTTCAAATgg            >  1:623445/1‑93 (MQ=255)
                                                                                 aaaCAGGGGGGTCATTGCTTAGATGATGACAGGTAATGGCGCGGATATCGAATGTTATGCAGACAGAGAAAATCAGCCTGTTCAAATGGCtgt        <  2:3698074/93‑1 (MQ=255)
                                                                                   aCAGGGGGGTCATTGCTTAGATGATGACAGGTAATGGCGCGGATATCGAATGTTATGCAGACAGAGAAAATCAGCCTGTTCAAATGGCTGTGc      <  2:4515446/93‑1 (MQ=255)
                                                                                    cAGGGGGGTCATTGCTTAGATGATGACAGGTAATGGCGCGGATATCGAATGTTATGCAGACAGAGAAAATCAGCCTGTTCAAATGGCTGTGCg     <  1:3394234/93‑1 (MQ=255)
                                                                                      ggggggTCATTGCTTAGATGATGACAGGTAATGGCGCGGATATCGAATGTTATGCAGACAGAGAAAATCAGCCTGTTCAAATGGCTGTGCGAt   <  1:6595987/93‑1 (MQ=255)
                                                                                      ggggggTCATTGCTTAGATGATGACAGGTAATGGCGCGGATATCGAATGTTATGCAGACAGAGAAAATCAGCCTGTTCAAATGGCTGTGCGAt   >  1:4346947/1‑93 (MQ=255)
                                                                                      ggggggTCATTGCTTAGATGATGACAGGTAATGGCGCGGATATCGAATGTTATGCAGACAGAGAAAATCAGCCTGTTCAAATGGCTGTGCGAt   <  2:7847069/93‑1 (MQ=255)
                                                                                       ggggGTCATTGCTTAGATGATGACAGGTAATGGCGCGGATATCGAATGTTATGCAGACAGAGAAAATCAGCCTGTTCAAATGGCTGTGCGAtt  <  2:3809417/93‑1 (MQ=255)
                                                                                          |                                                                                         
GGCGGCTTTTGGTAGCATGTTATTGTTCTTTCTGGTTGAAACATCTTATAAGGGTGGCAAAACTCACCGGGGATGCAAGCGAAACAGGGGAGTCATTGCTTAGATGATGACAGGTAATGGCGCGGATATCGAATGTTATGCAGACAGAGAAAATCAGCCTGTTCAAATGGCTGTGCGATT  >  NC_000913/1926846‑1927025

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

BRESEQ :: bam2aln output
GGGCGGCTTTTGGTAGCATGTTATTGTTCTTTCTGGTTGAAACATCTTATAAGGGTGGCAAAACTCACCGGGGATGCAAGCGAAACAGGGGAGTCATTGCTTAGATGATGACAGGTAATGGCGCGGATATCGAATGTTATGCAGACAGAGAAAATCAGCCTGTTCAAATGGCTGTGCGATTCTGG  >  NC_000913/1926845‑1927029
                                                                                           |                                                                                             
GGGCGGCTTTTGGTAGCATGTTATTGTTCTTTCTGGTTGAAACATCTTATAAGGGTGGCAAAACTCACCGGGGATGCAAGCGAAACAGGGGGGT                                                                                             >  SRR4302543.7894521/1‑94 (MQ=60)
   CGGCTTTTGGTAGCATGTTATTGTTCTTTCTGGTTGAAACATCTTATAAGGGTGGCAAAACTCACCGGGGATGCAAGCGAAACAGGGGGGTCAT                                                                                          <  SRR4302543.4577406/94‑1 (MQ=60)
    GGCTTTTGGTAGCATGTTATTGTTCTTTCTGGTTGAAACATCTTATAAGGGTGGCAAAACTCACCGGGGATGCAAGCGAAACAGGGGGGTCATT                                                                                         <  SRR4302543.1208934/94‑1 (MQ=60)
     GCTTTTGGTAGCATGTTATTGTTCTTTCTGGTTGAAACATCTTATAAGGGTGGCAAAACTCACCGGGGATGCAAGCGAAACAGGGGGGTCATTG                                                                                        <  SRR4302543.1542695/94‑1 (MQ=60)
      CTTTTGGTAGCATGTTATTGTTCTTTCTGGTTGAAACATCTTATAAGGGTGGCAAAACTCACCGGGGATGCAAGCGAAACAGGGGGGTCATTGC                                                                                       >  SRR4302543.2972307/1‑94 (MQ=60)
        TTTGGTAGCATGTTATTGTTCTTTCTGGTTGAAACATCTTATAAGGGTGGCAAAACTCACCGGGGATGCAAGCGAAACAGGGGGGTCATTGCTT                                                                                     <  SRR4302543.7622825/94‑1 (MQ=60)
         TTGGTAGCATGTTATTGTTCTTTCTGGTTGAAACATCTTATAAGGGTGGCAAAACTCACCGGGGATGCAAGCGAAACAGGGGGGTCATTGCTTG                                                                                    >  SRR4302543.2088328/1‑94 (MQ=60)
         TTGGTAGCATGTTATTGTTCTTTCTGGTTGAAACATCTTATAAGGGTGGCAAAACTCACCGGGGATGCAAGCGAAACAGGGGGGTCATTGCTTA                                                                                    <  SRR4302543.7975908/94‑1 (MQ=60)
            GTAGCATGTTATTGTTCTTTCTGGTTGAAACATCTTATAAGGGTGGCAAAACTCCCCGGGGAGGCAAGCGAAACAGGGGGGCCATTGCTTAGAT                                                                                 >  SRR4302543.1470010/1‑94 (MQ=60)
            GTAGCATGTTATTGTTCTTTCTGGTTGAAACATCTTATAAGGGTGGCAAAACTCACCGGGGATGCAAGCGAAACAGGGGGGTCATTGCTTAGAT                                                                                 >  SRR4302543.1068436/1‑94 (MQ=60)
            GTAGCATGTTATTGTTCTTTCTGGTTGAAACATCTTATAAGGGTGGCAAAACTCACCGGGGATGCAAGCGAAACAGGGGGGTCATTGCTTAGAT                                                                                 <  SRR4302543.2959715/94‑1 (MQ=60)
            GTAGCATGTTATTGTTCTTTCTGGTTGAAACATCTTATAAGGGTGGCAAAACTCACCGGGGATGCAAGCGAAACAGGGGGGTCATTGCTTAGAT                                                                                 <  SRR4302543.4302327/94‑1 (MQ=60)
            GTAGCATGTTATTGTTCTTTCTGGTTGAAACATCTTATAAGGGTGGCAAAACTCACCGGGGATGCAAGCGAAACAGGGGGGTCATTGCTTAGAT                                                                                 <  SRR4302543.4302328/94‑1 (MQ=60)
             TAGCATGTTATTGTTCTTTCTGGTTTAAACATCTTATAAGGGTGGCAAAACTCACCGGGGATGCAAGCGAAACAGGGGGGTCATTGCTTAGATG                                                                                <  SRR4302543.6603733/94‑1 (MQ=60)
             TAGCATGTTATTGTTCTTTCTGGTTGAAACATCTTATAAGGGTGGCAAAACTCACCGGGGATGCAAGCGAAACAGGGGGGTCATTGCTTAGATG                                                                                <  SRR4302543.6603938/94‑1 (MQ=60)
              AGCATGTTATTGTTCTTTCTGGTTGAAACATCTTATAAGGGTGGCAAAACTCACCGGGGATGCAAGCGAAACAGGGGGGTCATTGCTTAGATGA                                                                               >  SRR4302543.3183293/1‑94 (MQ=60)
              AGCATGTTATTGTTCTTTCTGGTTGAAACATCTTATAAGGGTGGCAAAACTCACCGGGGATGCAAGCGAAACAGGGGGGTCATTGCTTAGATGA                                                                               >  SRR4302543.3183290/1‑94 (MQ=60)
               GCATGTTATTGTTCTTTCTGGTTGAAACATCTTATAAGGGTGGCAAAACTCACCGGGGATGCAAGCGAAACAGGGGGGTCATTGCTTAGATGAT                                                                              <  SRR4302543.5573814/94‑1 (MQ=60)
               GCATGTTATTGTTCTTTCTGGTTGAAACATCTTATAAGGGTGGCAAAACTCACCGGGGATGCAAGCGAAACAGGGGGGTCATTGCTTAGATGAT                                                                              >  SRR4302543.4143812/1‑94 (MQ=60)
               GCATGTTATTGTTCTTTCTGGTTGAAACATCTTATAAGGGTGGCAAAACTCACCGGGGATGCAAGCGAAACAGGGGGGTCATTGCTTAGATGAT                                                                              <  SRR4302543.2431884/94‑1 (MQ=60)
                CATGTTATTGTTCTTTCTGGTTGAAACATCTTATAAGGGTGGCAAAACTCACCGGGGATGCAAGCGAAACAGGGGGGTCATTGCTTAGATGATG                                                                             >  SRR4302543.106628/1‑94 (MQ=60)
                 ATGTTATTGTTCTTTCTGGTTGAAACATCTTATAAGGGTGGCAAAACTCACCGGGGATGCAAGCGAAACAGGGGGGTCATTGCTTAGATGATGA                                                                            <  SRR4302543.4084664/94‑1 (MQ=60)
                  TGTTATTGTTCTTTCTGGTTGAAACATCTTATAAGGGTGGCAAAACTCACCGGGGATGCAAGCGAAACAGGGGGGTCATTGCTTAGATGATGAC                                                                           >  SRR4302543.4997407/1‑94 (MQ=60)
                  TGTTATTGTTCTTTCTGGTTGAAACATCTTATAAGGGTGGCAAAACTCACCGGGGATGCAAGCGAAACAGGGGGGTCATTGCTTAGATGATGAC                                                                           <  SRR4302543.7002070/94‑1 (MQ=60)
                  TGTTATTGTTCTTTCTGGTTGAAACATCTTATAAGGGTGGCAAAACTCACCGGGGATGCAAGCGAAACAGGGGGGTCATTGCTTAGATGATGAC                                                                           <  SRR4302543.2739120/94‑1 (MQ=60)
                   GTTATTGTTCTTTCTGGTTGAAACATCTTATAAGGGTGGCAAAACTCACCGGGGATGCAAGCGAAACAGGGGGGTCATTGCTTAGATGATGACA                                                                          <  SRR4302543.2566757/94‑1 (MQ=60)
                    TTATTGTTCTTTCTGGTTGAAACATCTTATAAGGGTGGCAAAACTCACCGGGGATGCAAGCGAAACAGGGGGGTCATTGCTTAGATGATGACAG                                                                         >  SRR4302543.4814423/1‑94 (MQ=60)
                    TTATTGTTCTTTCTGGTTGAAACATCTTATAAGGGTGGCAAAACTCACCGGGGATGCAAGCGAAACAGGGGGGTCATTGCTTAGATGATGACAG                                                                         <  SRR4302543.413584/94‑1 (MQ=60)
                    TTATTGTTCTTTCTGGTTGAAACATCTTATAAGGGTGGCAAAACTCACCGGGGATGCAAGCGAAACAGGGGGGTCATTGCTTAGATGATGACAG                                                                         >  SRR4302543.2558075/1‑94 (MQ=60)
                     TATTGTTCTTTCTGGTTGAAACATCTTATAAGGGTGGCAAAACTCACCGGGGATGCAAGCGAAACAGGGGGGTCATTGCTTAGATGATGACAGG                                                                        >  SRR4302543.5803620/1‑94 (MQ=60)
                     TATTGTTCTTTCTGGTTGAAACATCTTATAAGGGTGGCAAAACTCACCGGGGATGCAAGCGAAACAGGGGGGTCATTGCTTAGATGATGACAGG                                                                        <  SRR4302543.469683/94‑1 (MQ=60)
                     TATTGTTCTTTCTGGTTGAAACATCTTATAAGGGTGGCAAAACTCACCGGGGATGCAAGCGAAACAGGGGGGTCATTGCTTAGATGATGACAGG                                                                        >  SRR4302543.1436135/1‑94 (MQ=60)
                      ATTGTTCTTTCTGGTTGAAACATCTTATAAGGGTGGCAAAACTCACCGGGGATGCAAGCGAAACAGGGGGGTCATTGCTTAGATGATGACAGGT                                                                       >  SRR4302543.654322/1‑94 (MQ=60)
                      ATTGTTCTTTCTGGTTGAAACATCTTATAAGGGTGGCAAAACTCACCGGGGATGCAAGCGAAACAGGGGGGTCATTGCTTAGATGATGACAGGT                                                                       >  SRR4302543.654323/1‑94 (MQ=60)
                      ATTGTTCTTTCTGGTTGAAACATCTTATAAGGGTGGCAAAACTCACCGGGGATGCAAGCGAAACAGGGGGGTCATTGCTTAGATGATGACAGGT                                                                       >  SRR4302543.7230029/1‑94 (MQ=60)
                       TTGTTCTTTCTGGTTGAAACATCTTATAAGGGTGGCAAAACTCACCGGGGATGCAAGCGAAACAGGGGGGTCATTGCTTAGATGATGACAGGTA                                                                      >  SRR4302543.7754674/1‑94 (MQ=60)
                          TTCTTTCTGGTTGAAACATCTTATAAGGGTGGCAAAACTCACCGGGGATGCAAGCGAAACAGGGGGGTCATTGCTTAGATGATGACAGGTAATG                                                                   >  SRR4302543.268447/1‑94 (MQ=60)
                          TTCTTTCTGGTTGAAACATCTTATAAGGGTGGCAAAACTCACCGGGGATGCAAGCGAAACAGGGGGGTCATTGCTTAGATGATGACAGGTAATG                                                                   >  SRR4302543.23588/1‑94 (MQ=60)
                          TTCTTTCTGGTTGAAACATCTTATAAGGGTGGCAAAACTCACCGGGGATGCAAGCGAAACAGGGGGGTCATTGCTTAGATGATGACAGGTAATG                                                                   <  SRR4302543.7563855/94‑1 (MQ=60)
                            CTTTCTGGTTGAAACATCTTATAAGGGTGGCAAAACTCGCCGGGGATGCAAGCGAAACAGGGGGGTCATGGCTTAGATGATGACAGGTAATGGC                                                                 <  SRR4302543.1153287/94‑1 (MQ=60)
                            CTTTCTGGTTGAAACATCTTATAAGGGTGGCAAAACTCACCGGGGATGCAAGCGAAACAGGGGGGTCATTGCTTAGATGATGACAGGTAATGGC                                                                 <  SRR4302543.4078796/94‑1 (MQ=60)
                            CTTTCTGGTTGAAACATCTTATAAGGGTGGCAAAACTCACCGGGGATGCAAGCGAAACAGGGGGGTCATTGCTTAGATGATGACAGGTAATGGC                                                                 <  SRR4302543.3800055/94‑1 (MQ=60)
                            CTTTCTGGTTGAAACATCTTATAAGGGTGGCAAAACTCACCGGGGATGCAAGCGAAACAGGGGGGTCATTGCTTAGATGATGACAGGTAATGGC                                                                 >  SRR4302543.3552170/1‑94 (MQ=60)
                             TTTCTGGTTGAAACATCTTATAAGGGTGGCAAAACTCACCGGGGATGCAAGCGAAACAGGGGGGTCATTGCTTAGATGATGACAGGTAATGGCG                                                                <  SRR4302543.811796/94‑1 (MQ=60)
                             TTTCTGGTTGAAACATCTTATAAGGGTGGCAAAACTCACCGGGGATGCAAGCGAAACAGGGGGGTCATTGCTTAGATGATGACAGGTAATGGCG                                                                <  SRR4302543.6377845/94‑1 (MQ=60)
                             TTTCTGGTTGAAACATCTTATAAGGGTGGCAAAACTCACCGGGGATGCAAGCGAAACAGGGGGGTCATTGCTTAGATGATGACAGGTAATGGCG                                                                >  SRR4302543.3572173/1‑94 (MQ=60)
                              TTCTGGTTGAAACATCTTATAAGGGTGGCAAAACTCACCGGGGATGCAAGCGAAACAGGGGGGTCATTGCTTAGATGATGACAGGTAATGGCGC                                                               >  SRR4302543.3223714/1‑94 (MQ=60)
                              TTCTGGTTGAAACATCTTATAAGGGTGGCAAAACTCACCGGGGATGCAAGCGAAACAGGGGGGTCATTGCTTAGATGATGACAGGTAATGGCGC                                                               >  SRR4302543.3531223/1‑94 (MQ=60)
                                CTGGTTGAAACATCTTATAAGGGTGGCAAAACTCACCGGGGATGCAAGCGAAACAGGGGGGTCATTGCTTAGATGATGACAGGTAATGGCGCGG                                                             >  SRR4302543.4702410/1‑94 (MQ=60)
                                CTGGTTGAAACATCTTATAAGGGTGGCAAAACTCACCGGGGATGCAAGCGAAACAGGGGGGTCATTGCTTAGATGATGACAGGTAATGGCGCGG                                                             >  SRR4302543.3862620/1‑94 (MQ=60)
                                 TGGTTGAAACATCTTATAAGGGTGGCAAAACTCACCGGGGATGCAANCGAAACAGGGGGGTCATTGCTNANNNNATNACAGGTANTNGCNCNNN                                                            >  SRR4302543.1606713/1‑94 (MQ=60)
                                  GGTTGAAACATCTTATAAGGGTGGCAAAACTCACCGGGGATGCAAGCGAAACAGGGGGGTCATTGCTTAGATGATGACAGGTAATGGCGCGGAT                                                           <  SRR4302543.6791961/94‑1 (MQ=60)
                                  GGTTGAAACATCTTATAAGGGTGGCAAAACTCACCGGGGATGCAAGCGAAACAGGGGGGTCATTGCTTAGATGATGACAGGTAATGGCGCGGAT                                                           <  SRR4302543.2851742/94‑1 (MQ=60)
                                  GGTTGAAACATCTTATAAGGGTGGCAAAACTCACCGGGGATGCAAGCGAAACAGGGGGGTCATTGCTTAGATGATGACAGGTAATGGCGCGGAT                                                           <  SRR4302543.507526/94‑1 (MQ=60)
                                  AGTTGAAACATCTTATAAGGGTGGCAAAACTCACCGGGGATGCAAGCGAAACAGGGGGGTCATTGCTTAGATGATGACAGGTAATGGCGCGGAT                                                           <  SRR4302543.7488371/94‑1 (MQ=60)
                                   GTTGAAACATCTTATAAGGGTGGCAAAACTCACCGGGGATGCAAGCGAAACAGGGGGGTCATTGCTTAGATGATGACAGGTAATGGCGCGGATA                                                          <  SRR4302543.3303526/94‑1 (MQ=60)
                                   GTTGAAACATCTTATAAGGGTGGCAAAACTCACCGGGGATGCAAGCGAAACAGGGGGGTCATTGCTTAGATGATGACAGGTAATGGCGCGGATA                                                          <  SRR4302543.5904181/94‑1 (MQ=60)
                                   GTTGAAACATCTTATAAGGGTGGCAAAACTCACCGGGGATGCAAGCGAAACAGGGGGGTCATTGCTTAGATGATGACAGGTAATGGCGCGGATA                                                          <  SRR4302543.4825895/94‑1 (MQ=60)
                                     TGAAACATCTTATAAGGGTGGCAAAACTCACCGGGGATGCAAGCGAAACAGGGGGGTCATTGCTTAGATGATGACAGGTAATGGCGCGGATATC                                                        <  SRR4302543.6367843/94‑1 (MQ=60)
                                      GAAACATCTTATAAGGGTGGCAAAACTCACCGGGGATGCAAGCGAAACAGGGGGGTCATTGCTTAGATGATGACAGGTAATGGCGCGGATATCG                                                       <  SRR4302543.7186139/94‑1 (MQ=60)
                                       AAACATCTTATAAGGGTGGCAAAACTCACCGGGGATGCAAGCGAAACAGGGGGGTCATTGCTTAGATGATGACAGGTAATGGCGCGGATATCGA                                                      >  SRR4302543.543267/1‑94 (MQ=60)
                                         ACATCTTATAAGGGTGGCAAAACTCACCGGGGATGCAAGCGAAACAGGGGGGTCATTGCTTAGATGATGACAGGTAATGGCGCGGATATCGAAT                                                    <  SRR4302543.5297990/94‑1 (MQ=60)
                                         ACATCTTATAAGGGTGGCAAAACTCACCGGGGATGCAAGCGAAACAGGGGGGTCATTGCTTAGATGATGACAGGTAATGGCGCGGATATCGAAT                                                    <  SRR4302543.2666255/94‑1 (MQ=60)
                                         ACATCTTATAAGGGTGGCAAAACTCACCGGGGATGCAAGCGAAACAGGGGGGTCATTGCTTAGATGATGACAGGTAATGGCGCGGATATCGAAT                                                    <  SRR4302543.2123467/94‑1 (MQ=60)
                                          CATCTTATAAGGGTGGCAAAACTCACCGGGGATGCAAGCGAAACAGGGGGGTCATTGCTTAGATGATGACAGGTAATGGCGCGGATATCGAATG                                                   >  SRR4302543.6689714/1‑94 (MQ=60)
                                          CATCTTATAAGGGTGGCAAAACTCACCGGGGATGCAAGCGAAACAGGGGGGTCATTGCTTAGATGATGACAGGTAATGGCGCGGATATCGAATG                                                   >  SRR4302543.7938821/1‑94 (MQ=60)
                                           ATCTTATAAGGGTGGCAAAACTCACCGGGGATGCAAGCGAAACAGGGGGGTCATTGCTTAGATGATGACAGGTAATGGCGCGGATATCGAATGT                                                  >  SRR4302543.5417257/1‑94 (MQ=60)
                                           ATCTTATAAGGGTGGCAAAACTCACCGGGGATGCAAGCGAAACAGGGGGGTCATTGCTTAGATGATGACAGGTAATGGCGCGGATATCGAATGT                                                  >  SRR4302543.297229/1‑94 (MQ=60)
                                           ATCTTATAAGGGTGGCAAAACTCACCGGGGATGCAAGCGAAACAGGGGGGTCATTGCTTAGATGATGACAGGTAATGGCGCGGATATCGAATGT                                                  >  SRR4302543.4986373/1‑94 (MQ=60)
                                             CTTATAAGGGTGGCAAAACTCACCGGGGATGCAAGCGAAACAGGGGGGTCATTGCTTAGATGATGACAGGTAATGGCGCGGATATCGAATGTTA                                                >  SRR4302543.2800412/1‑94 (MQ=60)
                                              TTATAAGGGTGGCAAAACTCACCGGGGATGCAAGCGAAACAGGGGGGTCATTGCTTAGATGATGACAGGTAATGGCGCGGATATCGAATGTTAT                                               <  SRR4302543.2437994/94‑1 (MQ=60)
                                              TTATAAGGGTGGCAAAACTCACCGGGGATGCAAGCGAAACAGGGGGGTCATTGCTTAGATGATGACAGGTAATGGCGCGGATATCGAATGTTAT                                               <  SRR4302543.470774/94‑1 (MQ=60)
                                              TTATAAGGGTGGCAAAACTCACCGGGGATGCAAGCGAAACAGGGGGGTCATTGCTTAGATGATGACAGGTAATGGCGCGGATATCGAATGTTAT                                               <  SRR4302543.2482701/94‑1 (MQ=60)
                                               TATAAGGGTGGCAAAACTCACCGGGGATGCAAGCGAAACAGGGGGGTCATTGCTTAGATGATGACAGGTAATGGCGCGGATATCGAATGTTATG                                              <  SRR4302543.2336690/94‑1 (MQ=60)
                                                ATAAGGGTGGCAAAACTCACCGGGGATGCAAGCGAAACAGGGGGGTCATTGCTTAGATGATGACAGGTAATGGCGCGGATATCGAATGTTATGC                                             <  SRR4302543.7319448/94‑1 (MQ=60)
                                                 TAAGGGTGGCAAAACTCACCGGGGATGCAAGCGAAACAGGGGGGTCATTGCTTAGATGATGACAGGTAATGGCGCGGATATCGAATGTTATGCA                                            >  SRR4302543.2492731/1‑94 (MQ=60)
                                                 TAAGGGTGGCAAAACTCACCGGGGATGCAAGCGAAACAGGGGGGTCATTGCTTAGATGATGACAGGTAATGGCGCGGATATCGAATGTTATGCA                                            >  SRR4302543.1635906/1‑94 (MQ=60)
                                                 TAAGGGTGGCAAAACTCACCGGGGATGCAAGCGAAACAGGGGGGTCATTGCTTAGATGATGACAGGTAATGGCGCGGATATCGAATGTTATGCA                                            <  SRR4302543.441297/94‑1 (MQ=60)
                                                  AAGGGTGGCAAATGTCACCGGGGATGCAAGCGAAACAGGGGGGTCATTGCTTAGATGATGACAGGTAATGGCGCGGATATCGAATGTTATGCAG                                           <  SRR4302543.636645/94‑1 (MQ=60)
                                                  AAGGGTGGCAAAACTCACCGGGGATGCAAGCGAAACAGGGGGGTCATTGCTTAGATGATGACAGGTAATGGCGCGGATATCGAATGTTATGCAG                                           <  SRR4302543.2773035/94‑1 (MQ=60)
                                                  AAGGGTGGCAAAACTCACCGGGGATGCAAGCGAAACAGGGGGGTCATTGCTTAGATGATGACAGGTAATGGCGCGGATATCGAATGTTATGCAG                                           <  SRR4302543.2451378/94‑1 (MQ=60)
                                                  AAGGGTGGCAAAACTCACCGGGGATGCAAGCGAAACAGGGGGGTCATTGCTTAGATGATGACAGGTAATGGCGCGGATATCGAATGTTATGCAG                                           >  SRR4302543.6384657/1‑94 (MQ=60)
                                                  AAGGGTGGCAAAACTCACCGGGGATGCAAGCGAAACAGGGGGGTCATTGCTTAGATGATGACAGGTAATGGCGCGAATATCGAATGTTATGCAG                                           <  SRR4302543.308033/94‑1 (MQ=60)
                                                     GGTGGCAAAACTCACCGGGGATGCAAGCGAAACAGGGGGGTCATTGCTTAGATGATGACAGGTAATGGCGCGGATATCGAATGTTATGCAGACA                                        <  SRR4302543.475410/94‑1 (MQ=60)
                                                      GTGGCAAAACTCACCGGGGATGCAAGCGAAACAGGGGGGTCATTGCTTAGATGATGACAGGTAATGGCGCGGATATCGAATGTTATGCAGACAG                                       <  SRR4302543.7045295/94‑1 (MQ=60)
                                                      GTGGCAAAACTCACCGGGGATGCAAGCGAAACAGGGGGGTCATTGCTTAGATGATGACAGGTAATGGCGCGGATATCGAATGTTATGCAGACAG                                       <  SRR4302543.317157/94‑1 (MQ=60)
                                                          CAAAACTCACCGGGGATGCAAGCGAAACAGGGGGGTCATTGCTTAGATGATGACAGGTAATGGCGCGGATATCGAATGTTATGCAGACAGAGAA                                   >  SRR4302543.1705270/1‑94 (MQ=60)
                                                          CAAAACTCACCGGGGATGCAAGCGAAACAGGGGGGTCATTGCTTAGATGATGACAGGTAATGGCGCGGATATCGAATGTTATGCAGACAGAGAA                                   <  SRR4302543.7237194/94‑1 (MQ=60)
                                                          CAAAACTCACCGGGGATGCAAGCGAAACAGGGGGGTCATTGCTTAGATGATGACAGGTAATGGCGCGGATATCGAATGTTATGCAGACAGAGAA                                   <  SRR4302543.6072297/94‑1 (MQ=60)
                                                           AAAACTCACCGGGGATGCAAGCGAAACAGGGGGGTCATTGCTTAGATGATGACAGGTAATGGCGCGGATATCGAATGTTATGCAGACAGAGAAA                                  >  SRR4302543.894545/1‑94 (MQ=60)
                                                              ACTCACCGGGGATGCAAGCGAAACAGGGGGGTCATTGCTTAGATGATGACAGGTAATTGCGCGGATATCGAATGTTATGCAGACAGAGAAAATA                               >  SRR4302543.3495720/1‑94 (MQ=60)
                                                              ACTCACCGGGGATGCAAGCGAAACAGGGGGGTCATTGCTTAGATGATGACAGGTAATGGCGCGGATATCGAATGTTATGCAGACAGAGAAAATC                               <  SRR4302543.1681457/94‑1 (MQ=60)
                                                              ACTCACCGGGGATGCAAGCGAAACAGGGGGGTCATTGCTTAGATGATGACAGGTAATGGCGCGGATATCGAATGTTATGCAGACAGAGAAAATA                               >  SRR4302543.3495719/1‑94 (MQ=60)
                                                                TCACCGGGGATGCAAGCGAAACAGGGGGGTCATTGCTTAGATGATGACAGGTAATGGCGCGGATATCGAATGTTATGCAGACAGAGAAAATCAG                             <  SRR4302543.1353258/94‑1 (MQ=60)
                                                                 CACCGGGGATGCAAGCGAAACAGGGGGGTCATTGCTTAGATGATGACAGGTAATGGCGCGGATATCGAATGTTATGCAGACAGAGAAAATCAGC                            >  SRR4302543.493644/1‑94 (MQ=60)
                                                                   CCGGGGATGCAAGCGAAACAGGGGGGTCATTGCTTAGATGATGACAGGTAATGGCGCGGATATCGAATGTTATGCAGACAGAGAAAATCAGCCT                          <  SRR4302543.2802077/94‑1 (MQ=60)
                                                                   CCGGGGATGCAAGCGAAACAGGGGGGTCATTGCTTAGATGATGACAGGTAATGGCGCGGATATCGAATGTTATGCAGACAGAGAAAATCAGCCT                          >  SRR4302543.7782118/1‑94 (MQ=60)
                                                                    CGGGGATGCAAGCGAAACAGGGGGGTCATTGCTTAGATGATGACAGGTAATGGCGCGGATATCGAATGTTATGCAGACAGAGAAAATCAGCCTG                         <  SRR4302543.7464542/94‑1 (MQ=60)
                                                                    CGGGGATGCAAGCGAAACAGGGGGGTCATTGCTTAGATGATGACAGGTAATGGCGCGGATATCGAATGTTATGCAGACAGAGAAAATCAGCCTG                         <  SRR4302543.7190040/94‑1 (MQ=60)
                                                                    CCGGGAAGCAAGCGGAACAGGGGGGTCATTGCTTAGATGATGACAGGTAATGGCGCGGATATCGAATGTTATGCAGACAGAGAAAATCAGCCTG                         <  SRR4302543.2778862/94‑1 (MQ=60)
                                                                       GGATGCAAGCGAAACAGGGGGGTCATTGCTTAGATGATGACAGGTAATGGCGCGGATATCGAATGTTATGCAGACAGAGAAAATCAGCCTGTTC                      >  SRR4302543.1518156/1‑94 (MQ=60)
                                                                         ATGCAAGCGAAACAGGGGGGTCATTGCTTAGATGATGACAGGTAATGGCGCGGATATCGAATGTTATGCAGACAGAGAAAATCAGCCTGTTCAA                    >  SRR4302543.4102231/1‑94 (MQ=60)
                                                                           GCAAGCGAAACAGGGGTGTCATTGCTTAGATGATGACAGGTAATGGCGCGGATATCGAATGTTATGCAGACAGAGAAAATCAGCCTGTTCAAAT                  <  SRR4302543.7814220/94‑1 (MQ=60)
                                                                           GCAAGCGAAACAGGGGGGTCATTGCTTAGATGATGACAGGTAATGGCGCGGATATCGAATGTTATGCAGACAGAGAAAATCAGCCTGTTCAAAT                  <  SRR4302543.7814219/94‑1 (MQ=60)
                                                                           GCAAGCGAAACAGGGGGGTCATTGCTTAGATGATGACAGGTAATGGCGCGGATATCGAATGTTATGCAGACAGAGAAAATCAGCCTGTTCAAAT                  >  SRR4302543.303242/1‑94 (MQ=60)
                                                                           GCAAGCGAAACAGGGGGGTCATTGCTTAGATGATGACAGGTAATGGCGCGGATATCGAATGTTATGCAGACAGAGAAAATCAGCCTGTTCAAAT                  <  SRR4302543.7907126/94‑1 (MQ=60)
                                                                             AAGCGAAACAGGGGGGTCATTGCTTAGATGATGACAGGTAATGGCGCGGATATCGAATGTTATGCAGACAGAGAAAATCAGCCTGTTCAAATGG                <  SRR4302543.3128473/94‑1 (MQ=60)
                                                                             AAGCGAAACAGGGGGGTCATTGCTTAGATGATGACAGGTAATGGCGCGGATATCGAATGTTATGCAGACAGAGAAAATCAGCCTGTTCAAATGG                <  SRR4302543.2666983/94‑1 (MQ=60)
                                                                             AAGCGAAACAGGGGGGTCATTGCTTAGATGATGACAGGTAATGGCGCGGATATCGAATGTTATGCAGACAGAGAAAATCAGCCTGTTCAAATGG                >  SRR4302543.629152/1‑94 (MQ=60)
                                                                               GCGAAACAGGGGGGTCATTGCTTAGATGATGACAGGTAATGGCGCGGATATCGAATGTTATGCAGACAGAGAAAATCAGCCTGTTCAAATGGCT              <  SRR4302543.4016734/94‑1 (MQ=60)
                                                                               GCGAAACAGGGGGGTCATTGCTTAGATGATGACAGGTAATGGCGCGGATATCGAATGTTATGCAGACAGAGAAAATCAGCCTGTTCAAATGGCT              <  SRR4302543.4485277/94‑1 (MQ=60)
                                                                                   AACAGGGGGGTCATTGCTTAGATGATGACAGGTAATGGCGCGGATATCGAATGTTATGCAGACAGAGAAAATCAGCCTGTTCAAATGGCTGTGC          <  SRR4302543.6149028/94‑1 (MQ=60)
                                                                                     CAGGGGGGTCATTGCTTAGATGATGACAGGTAATGGCGCGGATATCGAATGTTATGCAGACAGAGAAAATCAGCCTGTTCAAATGGCTGTGCGA        <  SRR4302543.3424666/94‑1 (MQ=60)
                                                                                      AGGGGGGTCATTGCTTAGATGATGACAGGTAATGGCGCGGATATCGAATGTTATGCAGACAGAGAAAATCAGCCTGTTCAAATGGCTGTGCGAT       >  SRR4302543.4386354/1‑94 (MQ=60)
                                                                                       GGGGGGTCATTGCTTAGATGATGACAGGTAATGGCGCGGATATCGAATGTTATGCAGACAGAGAAAATCAGCCTGTTCAAATGGCTGTGCGATT      <  SRR4302543.2169665/94‑1 (MQ=60)
                                                                                       GGGGGGTCATTGCTTAGATGATGACAGGTAATGGCGCGGATATCGAATGTTATGCAGACAGAGAAAATCAGCCTGTTCAAATGGCTGTGCGATT      <  SRR4302543.1917526/94‑1 (MQ=60)
                                                                                       GGGGGGTCATTGCTTAGATGATGACAGGTAATGGCGCGGATATCGAATGTTATGCAGACAGAGAAAATCAGCCTGTTCAAATGGCTGTGCGATT      <  SRR4302543.6658142/94‑1 (MQ=60)
                                                                                         GGGGTCATTGCTTAGATGATGACAGGTAATGGCGCGGATATCGAATGTTATGCAGACAGAGAAAATCAGCCTGTTCAAATGGCTGTGCGATTCT    <  SRR4302543.7910188/94‑1 (MQ=60)
                                                                                         GGGGTCATTGCTTAGATGATGACAGGTAATGGCGCGGATATCGAATGTTATGCAGACAGAGAAAATCAGCCTGTTCAAATGGCTGTGCGATTCT    <  SRR4302543.1787417/94‑1 (MQ=60)
                                                                                          GGGTCATTGCTTAGATGATGACAGGTAATGGCGCGGATATCGAATGTTATGCAGACAGAGAAAATCAGCCTGTTCAAATGGCTGTGCGATTCTG   <  SRR4302543.6910758/94‑1 (MQ=60)
                                                                                           GGTCATTGCTTAGATGATGACAGGTAATGGCGCGGATATCGAATGTTATGCAGACAGAGAAAATCAGCCTGTTCAAATGGCTGTGCGATTCTGG  <  SRR4302543.3016518/94‑1 (MQ=60)
                                                                                           |                                                                                             
GGGCGGCTTTTGGTAGCATGTTATTGTTCTTTCTGGTTGAAACATCTTATAAGGGTGGCAAAACTCACCGGGGATGCAAGCGAAACAGGGGAGTCATTGCTTAGATGATGACAGGTAATGGCGCGGATATCGAATGTTATGCAGACAGAGAAAATCAGCCTGTTCAAATGGCTGTGCGATTCTGG  >  NC_000913/1926845‑1927029

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑