Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I1 R1	1696	279.3	15874187	97.8%	15524954	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	1,974,585	A→G	R193R (CGT→CGC)	motA ←	MotA

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	1,974,585	0	A	G	100.0%	565.4 / NA	183	R193R (CGT→CGC)	motA	MotA
Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (96/87); total (96/87)

Only 100 of 193 total aligned reads displayed.

TAATGGGGAAATAAATCCGTAAGCCAATAAAATGCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGACGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGCAACAATACCAAACGCCGGAAGTGAGTCCCCGACCAGCGCCAGACT  >  NC_000913/1974495‑1974674

 aaTGGGAAAATAAATCCGTAAGACAATAAAATGCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGa                                                                                        <  2:194055/93‑1 (MQ=255)

  aTGGGGAAATAAATCCGTAAGCCAATAAAATGCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGAt                                                                                       <  2:6933622/93‑1 (MQ=255)

  aTGGGGAAATAAATCCGTAAGCCAATAAAATGCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGAt                                                                                       <  1:5015656/93‑1 (MQ=255)

   tGGGGAAATAAATCCGTAAGCCAATAAAATGCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATc                                                                                      >  2:7327809/1‑93 (MQ=255)

   aggggAAATAAATCCGTAAGCCAATAAAATGCCGAGGAAAGTCCCCCCCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATc                                                                                      <  1:6515102/92‑1 (MQ=255)

    ggggAAATAAATCCGTAAGCCAATAAAATGCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCg                                                                                     >  2:1852698/1‑93 (MQ=255)

      ggAAATAAATCCGTAAGCCAATAAAATGCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGc                                                                                   <  2:3569146/93‑1 (MQ=255)

      ggAAATAAATCCGTAAGCCAATAAAATGCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGc                                                                                   <  1:2142920/93‑1 (MQ=255)

      ggAAATAAATCCGTAAGCCAATAAAATGCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGc                                                                                   <  2:1116780/93‑1 (MQ=255)

      ggAAATAAATCCGTAAGCCAATAAAATGCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGc                                                                                   >  1:5600898/1‑93 (MQ=255)

        aaataaatCCGTAAGCCAATAAAATGCCGAGGAAAATCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCCGCAGCGCGATCGGCTg                                                                                 >  2:5007224/1‑93 (MQ=255)

         aataaatCCGTAAGCCAATAAAATGCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGa                                                                                >  1:7449228/1‑93 (MQ=255)

         aataaatCCGTAAGCCAATAAAATGCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGa                                                                                >  1:5995636/1‑93 (MQ=255)

          ataaatCCGTAAGCCAATAAAATGCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGaa                                                                               >  2:867543/1‑93 (MQ=255)

          ataaatCCGTAAGCCAATAAAATGCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGaa                                                                               >  2:7104217/1‑93 (MQ=255)

          ataaatCCGTAAGCCAATAAAATGCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGaa                                                                               >  1:7269369/1‑93 (MQ=255)

             aatCCGTAAGCCAATAAAATGCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCGAGCTCGGCGGCAGGGCGAGCGGCTGAACCt                                                                            <  2:2085368/93‑1 (MQ=255)

               tCCGTAAGCCAATAAAATGCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTaa                                                                          <  1:7112082/93‑1 (MQ=255)

               tCCGTAAGCCAATAAAATGCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTaa                                                                          <  2:6508358/93‑1 (MQ=255)

                 cGTAAGCCAATAAAATGCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAAcg                                                                        >  2:4797396/1‑93 (MQ=255)

                 cGTAAGCCAATAAAATGCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAAcg                                                                        <  2:7796299/93‑1 (MQ=255)

                  gTAAGCCAATAAAATGCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAAcgc                                                                       >  1:5751929/1‑93 (MQ=255)

                    aaGCCAATAAAATGCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGt                                                                     <  1:5194769/93‑1 (MQ=255)

                      gCCAATAAAATGCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGa                                                                   <  2:2629093/93‑1 (MQ=255)

                      gCCAATAAAATGCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGa                                                                   <  1:5482209/93‑1 (MQ=255)

                       ccAATAAAATGCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGaa                                                                  <  1:617380/93‑1 (MQ=255)

                        cAATAAAATGCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAAc                                                                 <  1:7231002/93‑1 (MQ=255)

                           tAAAATGCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGAc                                                              <  1:4915235/93‑1 (MQ=255)

                           tAAAAGTCCGAGGAAAGTCCCCCCCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGGGAACGAc                                                              <  1:2520446/93‑1 (MQ=255)

                           aaaaaTGCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGAc                                                              <  2:5998631/92‑1 (MQ=255)

                            aaaaTGCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAATTTAACGCGTGAACGAcc                                                             >  1:7045567/1‑93 (MQ=255)

                            aaaaTGCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGAcc                                                             >  1:3631161/1‑93 (MQ=255)

                            aaaaTGCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGAcc                                                             <  1:3079800/93‑1 (MQ=255)

                             aaaTGCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGAccc                                                            >  2:1386209/1‑93 (MQ=255)

                             aaaTGCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGAccc                                                            >  1:4789522/1‑93 (MQ=255)

                                tGCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCa                                                         <  1:5556426/93‑1 (MQ=255)

                                tGCCGAGGAAAATCCCCACCATCGCATGTGCGATAAGCGCCCCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCa                                                         <  1:5244397/93‑1 (MQ=255)

                                  ccGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCAtt                                                       >  2:5239660/1‑93 (MQ=255)

                                   cGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTa                                                      <  2:7926774/93‑1 (MQ=255)

                                    gAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTAc                                                     <  2:4743916/93‑1 (MQ=255)

                                    gAGGAAACTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCCGCTGAACCTAACGCGTGAACGACCCCCATTAc                                                     <  2:3952142/93‑1 (MQ=255)

                                     aGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACa                                                    <  2:5626881/93‑1 (MQ=255)

                                     aGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACa                                                    <  1:278706/93‑1 (MQ=255)

                                     aGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACa                                                    <  1:5123691/93‑1 (MQ=255)

                                     aGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACa                                                    <  1:7918982/93‑1 (MQ=255)

                                         aaGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCg                                                >  2:7558405/1‑93 (MQ=255)

                                         aaGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCg                                                >  1:5088038/1‑93 (MQ=255)

                                          aGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGc                                               >  1:4477403/1‑93 (MQ=255)

                                           gTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGca                                              >  1:2071/1‑93 (MQ=255)

                                            tCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGcaa                                             >  2:4682212/1‑93 (MQ=255)

                                              cccACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGcaaca                                           >  2:6326340/1‑93 (MQ=255)

                                               ccaccaTCGCATGTGCGATAAGCGCACCCAGCTAGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGcaacaa                                          <  1:7615603/93‑1 (MQ=255)

                                                caccaTCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGCAACAAt                                         >  1:3173133/1‑93 (MQ=255)

                                                caccaTCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGCAACAAt                                         <  2:3103233/93‑1 (MQ=255)

                                                caccaTCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGCAACAAt                                         >  1:6298348/1‑93 (MQ=255)

                                                 cccaTCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGCAACAATa                                        <  2:2351162/92‑1 (MQ=255)

                                                  ccaTCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGCAACAATAc                                       >  1:7668991/1‑93 (MQ=255)

                                                  ccaTCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGCAACAATAc                                       >  2:1211980/1‑93 (MQ=255)

                                                   caTCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGCAACAATAcc                                      <  1:1018521/93‑1 (MQ=255)

                                                   caTCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGCAACAATAca                                      >  1:4022968/1‑92 (MQ=255)

                                                    aTCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGCAACAATACCa                                     >  1:2835832/1‑93 (MQ=255)

                                                    aTCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGCAACAATACCa                                     >  1:648930/1‑93 (MQ=255)

                                                    aTCGCATGTGAGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGCAACAATAACa                                     >  2:2707506/1‑93 (MQ=255)

                                                     tCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGCAACAATACCaa                                    >  2:4064060/1‑93 (MQ=255)

                                                      cggaTGGGCGATAAGCCGACCCGGCGCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGCAACAATACCaaa                                   <  1:1618808/90‑1 (MQ=255)

                                                         aTGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATTGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGCAACAATACCAAAcac                                >  2:6247329/1‑91 (MQ=255)

                                                         aTGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGCAACAATACCAAACGc                                >  1:6960223/1‑93 (MQ=255)

                                                          tgtgCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGCAACAATACCAAACGcc                               >  2:2212193/1‑93 (MQ=255)

                                                          tgtgCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGCAACAATACCAAACGcc                               >  2:5420771/1‑93 (MQ=255)

                                                          tgtgCGATAAGCGCACCCAGCTCGGCGACAGTGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGCAACAATACCAAACGcc                               <  2:399740/93‑1 (MQ=255)

                                                           gtgCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGCAACAATACCAAACGCCg                              >  1:2736179/1‑93 (MQ=255)

                                                           gtgCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGCAACAATACCAAACGCCg                              >  1:6836321/1‑93 (MQ=255)

                                                           gtgCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGCAACAATACCAAACGCCg                              <  2:3263942/93‑1 (MQ=255)

                                                           gtgCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGCAACAATACCAAACGCCg                              >  2:2915859/1‑93 (MQ=255)

                                                              cGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGCAACAATACCAAACGCCGGaa                           <  1:4605896/93‑1 (MQ=255)

                                                              cGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGCAACAATACCAAACGCCGGaa                           <  1:1719058/93‑1 (MQ=255)

                                                              cGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGCAACAATACCAAACGCCGGaa                           <  2:3187544/93‑1 (MQ=255)

                                                              cGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGCAACAATACCAAACGCCGGaa                           <  1:2215683/93‑1 (MQ=255)

                                                               gATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGCAACAATACCAAACGCCGGAAg                          >  1:4306212/1‑93 (MQ=255)

                                                               gATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGCAACAATACCAAACGCCGGAAg                          >  1:2969327/1‑93 (MQ=255)

                                                                aTAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGCAACAATACCAAACGCCGGAAGt                         <  1:1643611/93‑1 (MQ=255)

                                                                aTAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGCAACAATACCAAACGCCGGAAGt                         >  2:6134637/1‑93 (MQ=255)

                                                                aTAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGCAACAATACCAAACGCCGGAAGt                         <  2:6655837/93‑1 (MQ=255)

                                                                 tAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGCAACAATACCAAACGCCGGAAGTg                        >  2:7373910/1‑93 (MQ=255)

                                                                   aGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGCAACAATACCAAACGCCGGAAGTGAg                      <  1:3559306/93‑1 (MQ=255)

                                                                   aGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGCAACAATACCAAACGCCGGAAGTGAg                      <  1:2318931/93‑1 (MQ=255)

                                                                    gcgcCCCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGCAACAATACCAAACGCCGGAAGTGAGt                     <  2:7225121/93‑1 (MQ=255)

                                                                    gcgcACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGCAACAATACCAAACGCCGGAAGTGAGt                     >  2:222267/1‑93 (MQ=255)

                                                                    gcgcACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGCAACAATACCAAACGCCGGAAGTGAGt                     <  1:1182619/93‑1 (MQ=255)

                                                                      gcACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGCAACAATACCAAACGCCGGAAGTGAGTcc                   >  1:107044/1‑93 (MQ=255)

                                                                      gcACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGCAACAATACCAAACGCCGGAAGTGAGTcc                   <  2:369653/93‑1 (MQ=255)

                                                                        aCCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGCAACAATACCAAACGCCGGAAGTGAGTcccc                 >  1:1842617/1‑93 (MQ=255)

                                                                          ccAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGCAACAATACCAAACGCCGGAAGTGAGTCCCCGa               >  2:7763346/1‑93 (MQ=255)

                                                                               tCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGCAACAATACCAAACGCCGGAAGTGAGTCCCCGACCAgc          <  1:628751/93‑1 (MQ=255)

                                                                                   cggcAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGCAACAATACCAAACGCCGGAAGTGAGTCCCCGACCAGCGCCa      <  2:3889694/93‑1 (MQ=255)

                                                                                     gcAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGCAACAATACCAAACGCCGGAAGTGAGTCCCCGACCAGCGCCAGa    >  2:7602794/1‑93 (MQ=255)

                                                                                     gcAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGCAACAATACCAAACGCCGGAAGTGAGTCCCCGACCAGCGCCAGa    <  2:4938459/93‑1 (MQ=255)

                                                                                      cAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGCAACAATACCAAACGCCGGAAGTGAGTCCCCGACCAGCGCCAGAc   <  1:2560901/93‑1 (MQ=255)

                                                                                      cAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGCAACAATACCAAACGCCGGAAGTGAGTCCCCGACCAGCGCCAGAc   <  1:5568879/93‑1 (MQ=255)

                                                                                       aGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGCAACAATACCAAACGCCGGAAGTGAGTCCCCGACCAGCGCCAGACt  >  1:4122242/1‑93 (MQ=255)

TAATGGGGAAATAAATCCGTAAGCCAATAAAATGCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGACGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGCAACAATACCAAACGCCGGAAGTGAGTCCCCGACCAGCGCCAGACT  >  NC_000913/1974495‑1974674

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 18 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

CGCTAATGGGGAAATAAATCCGTAAGCCAATAAAATGCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGACGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGCAACAATACCAAACGCCGGAAGTGAGTCCCCGACCAGCGCCAGACTGTTC  >  NC_000913/1974492‑1974678

CGCTAATGGGGAAATAAATCCGTAAGCCAATAAAATGCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGG                                                                                               >  SRR4302543.7352824/1‑94 (MQ=60)

  CTAATGGGGAAATAAATCCGTAAGCCAATAAAATGCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCG                                                                                             >  SRR4302543.373058/1‑94 (MQ=60)

   TAATGGGGAAATAAATCCGTAAGCCAATAAAATGCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGA                                                                                            >  SRR4302543.7185364/1‑94 (MQ=60)

    AATGGGGAAATAAATCCGTAAGCCAATAAAATGCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGAT                                                                                           >  SRR4302543.2799326/1‑94 (MQ=60)

     ATGGGGAAATAAATCCGTAAGCCAATAAAATGCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATC                                                                                          <  SRR4302543.5061291/94‑1 (MQ=60)

     ATGGGGAAATAAATCCGTAAGCCAATAAAATGCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATC                                                                                          <  SRR4302543.2191479/94‑1 (MQ=60)

     ATGGGGAAATAAATCCGTAAGCCAATAAAATGCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATC                                                                                          <  SRR4302543.6941689/94‑1 (MQ=60)

      TGGGGAAATAAATCCGTAAGCCAATAAAATGCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCG                                                                                         >  SRR4302543.1749368/1‑94 (MQ=60)

      AGGGGAAATAAATCCGTAAGCCAATAAAATGCCGAGGAAAGTCCCCCCCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCG                                                                                         <  SRR4302543.6576467/94‑1 (MQ=60)

        GGGAAATAAATCCGTAAGCCAATAAAATGCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGC                                                                                       >  SRR4302543.5651930/1‑94 (MQ=60)

         GGAAATAAATCCGTAAGCCAATAAAATGCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCT                                                                                      <  SRR4302543.2162098/94‑1 (MQ=60)

           AAATAAATCCGTAAGCCAATAAAATGCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGA                                                                                    >  SRR4302543.4689138/1‑94 (MQ=60)

           AAATAAATCCGTAAGCCAATAAAATGCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGA                                                                                    >  SRR4302543.6050595/1‑94 (MQ=60)

           AAATAAATCCGTAAGCCAATAAAATGCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGA                                                                                    >  SRR4302543.7520613/1‑94 (MQ=60)

            AATAAATCCGTAAGCCAATAAAATGCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAA                                                                                   >  SRR4302543.7339599/1‑94 (MQ=60)

            AATAAATCCGTAAGCCAATAAAATGCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAA                                                                                   <  SRR4302543.4225155/94‑1 (MQ=60)

            AATAAATCCGTAAGCCAATAAAATGCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAA                                                                                   >  SRR4302543.7339600/1‑94 (MQ=60)

             ATAAATCCGTAAGCCAATAAAATGCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAAC                                                                                  >  SRR4302543.4545568/1‑94 (MQ=60)

              TAAATCCGTAAGCCAATAAAATGCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACC                                                                                 <  SRR4302543.2574186/94‑1 (MQ=60)

                AATCCGTAAGCCAATAAAATGCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTA                                                                               <  SRR4302543.5419867/94‑1 (MQ=60)

                 ATCCGTAAGCCAATAAAATGCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAA                                                                              >  SRR4302543.4431619/1‑94 (MQ=60)

                  TCCGTAATCCAATAAAATGCCGAGGAAAGTCCCCCGCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAAC                                                                             <  SRR4302543.2750390/94‑1 (MQ=60)

                  TCCGTAAGCCAATAAAATGCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAAC                                                                             <  SRR4302543.3038173/94‑1 (MQ=60)

                  TCCGTAAGCCAATAAAATGCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAAC                                                                             <  SRR4302543.7181172/94‑1 (MQ=60)

                   CCGTAAGCCAATAAAATGCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACG                                                                            <  SRR4302543.5749977/94‑1 (MQ=60)

                    CGTAAGCCAATAAAATGCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGC                                                                           >  SRR4302543.5804352/1‑94 (MQ=60)

                    CGTAAGCCAATAAAATGCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGC                                                                           >  SRR4302543.7975111/1‑94 (MQ=60)

                     GTAAGCCAATAAAATGCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCG                                                                          >  SRR4302543.227022/1‑94 (MQ=60)

                       AAGCCAATAAAATGCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTG                                                                        <  SRR4302543.5241607/94‑1 (MQ=60)

                       AAGCCAATAAAATGCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTG                                                                        >  SRR4302543.5143163/1‑94 (MQ=60)

                        AGCCAATAAAATGCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGA                                                                       <  SRR4302543.983916/94‑1 (MQ=60)

                         GCCAATAAAATGCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAA                                                                      <  SRR4302543.5531902/94‑1 (MQ=60)

                          CCAATAAAATGCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAAC                                                                     <  SRR4302543.623027/94‑1 (MQ=60)

                           CAATAAAATGCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACG                                                                    <  SRR4302543.7301031/94‑1 (MQ=60)

                              TAAAATGCCGAGGAAAGTCCCCACCATCGCTTGTGCGATAAGCGCACCCAGCTCGGCGGCTGGGCTATCGGTTGAACTTAACGCGTGAACGACC                                                                 >  SRR4302543.7113789/1‑94 (MQ=60)

                              TAAAATGCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAATTTAACGCGTGAACGACC                                                                 >  SRR4302543.7113788/1‑94 (MQ=60)

                              TAAAATGCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACC                                                                 <  SRR4302543.4960022/94‑1 (MQ=60)

                              TAAAATGCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACC                                                                 >  SRR4302543.3663132/1‑94 (MQ=60)

                              TAAAAGTCCGAGGAAAGTCCCCCCCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGGGAACGACC                                                                 <  SRR4302543.2543353/94‑1 (MQ=60)

                               AAAATGCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCC                                                                >  SRR4302543.4833298/1‑94 (MQ=60)

                               AAAATGCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCC                                                                <  SRR4302543.3107495/94‑1 (MQ=60)

                                 AATGCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGATCGACCCCC                                                              >  SRR4302543.5587713/1‑94 (MQ=60)

                                   TGCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCAT                                                            <  SRR4302543.5291669/94‑1 (MQ=60)

                                   TGCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCAT                                                            <  SRR4302543.5606961/94‑1 (MQ=60)

                                   TGCCGAGGAAAATCCCCACCATCGCATGTGCGATAAGCGCCCCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCAT                                                            <  SRR4302543.5291670/94‑1 (MQ=60)

                                       GAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACA                                                        <  SRR4302543.6257625/94‑1 (MQ=60)

                                       GAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACA                                                        >  SRR4302543.1197098/1‑94 (MQ=60)

                                        AGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAG                                                       <  SRR4302543.281175/94‑1 (MQ=60)

                                        AGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAG                                                       <  SRR4302543.5170017/94‑1 (MQ=60)

                                        AGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAG                                                       <  SRR4302543.7993362/94‑1 (MQ=60)

                                         GGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGC                                                      <  SRR4302543.487029/94‑1 (MQ=60)

                                          GAAAGGCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCC                                                     <  SRR4302543.6608539/94‑1 (MQ=60)

                                           AAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCG                                                    >  SRR4302543.5134155/1‑94 (MQ=60)

                                            AAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGC                                                   >  SRR4302543.4518052/1‑94 (MQ=60)

                                             AGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGCA                                                  >  SRR4302543.2093/1‑94 (MQ=60)

                                             AGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGCA                                                  >  SRR4302543.2094/1‑94 (MQ=60)

                                                 CCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGCAACAA                                              <  SRR4302543.5643828/94‑1 (MQ=60)

                                                  CCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGCAACAAT                                             >  SRR4302543.6357625/1‑94 (MQ=60)

                                                  CCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGCAACAAT                                             >  SRR4302543.3201721/1‑94 (MQ=60)

                                                  CCACCATCGCATGTGCGATAAGCGCACCCAGCTAGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGCAACAAT                                             <  SRR4302543.7687901/94‑1 (MQ=60)

                                                   CACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGCAACAATA                                            >  SRR4302543.5612189/1‑94 (MQ=60)

                                                    ACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGCAACAATAC                                           >  SRR4302543.7741667/1‑94 (MQ=60)

                                                     CCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGCAACAATACC                                          >  SRR4302543.1138911/1‑94 (MQ=60)

                                                     CCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGCAACAATACA                                          >  SRR4302543.4058909/1‑94 (MQ=60)

                                                      CATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGCAACAATACCA                                         <  SRR4302543.1027532/94‑1 (MQ=60)

                                                      CATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGCAACAATACCA                                         >  SRR4302543.654865/1‑94 (MQ=60)

                                                      CATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGCAACAATACCA                                         >  SRR4302543.2861768/1‑94 (MQ=60)

                                                       ATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGCAACAATACCAA                                        >  SRR4302543.5226987/1‑94 (MQ=60)

                                                       ATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGCAACAATACCAA                                        >  SRR4302543.6420668/1‑94 (MQ=60)

                                                         CGGATGGGCGATAAGCCGACCCGGCGCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGCAACAATACCAAAC                                      <  SRR4302543.1633236/94‑1 (MQ=60)

                                                         CGCATGTGCGGAAAGCGGACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGCCCCCCATTACAGCCGCAACAATACCAAAC                                      <  SRR4302543.6318472/94‑1 (MQ=60)

                                                          GCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGCAACAATACCAAACG                                     >  SRR4302543.3598563/1‑94 (MQ=60)

                                                           CATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGCAACAATACCAAACGC                                    <  SRR4302543.5873575/94‑1 (MQ=60)

                                                           CATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGCAACAATACCAAACGC                                    >  SRR4302543.7025719/1‑94 (MQ=60)

                                                           CATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGCAACAATACCAAACGC                                    >  SRR4302543.7025718/1‑94 (MQ=60)

                                                            ATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGCAACAATACCAAACGCC                                   >  SRR4302543.3131223/1‑94 (MQ=60)

                                                            ATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTCAACCTAACGCGTGAACGACCCCCATTACAGCCGCAACAATACCAAACGCC                                   >  SRR4302543.1654263/1‑94 (MQ=60)

                                                             TGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGCAACAATACCAAACGCCG                                  >  SRR4302543.6900852/1‑94 (MQ=60)

                                                             TGTGCGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGCAACAATACCAAACGCCG                                  >  SRR4302543.2761076/1‑94 (MQ=60)

                                                                 CGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGCAACAATACCAAACGCCGGAAG                              <  SRR4302543.2235655/94‑1 (MQ=60)

                                                                 CGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGCAACAATACCAAACGCCGGAAG                              >  SRR4302543.4345334/1‑94 (MQ=60)

                                                                 CGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGCAACAATACCAAACGCCGGAAG                              <  SRR4302543.1734406/94‑1 (MQ=60)

                                                                 CGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGCAACAATACCAAACGCCGGAAG                              <  SRR4302543.4647735/94‑1 (MQ=60)

                                                                 CGATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGCAACAATACCAAACGCCGGAAG                              >  SRR4302543.2996294/1‑94 (MQ=60)

                                                                   ATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGCAACAATACCAAACGCCGGAAGTG                            <  SRR4302543.1658286/94‑1 (MQ=60)

                                                                   ATAAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGCAACAATACCAAACGCCGGAAGTG                            >  SRR4302543.1713614/1‑94 (MQ=60)

                                                                     AAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGCAACAATACCAAACGCCGGAAGTGAG                          <  SRR4302543.7563730/94‑1 (MQ=60)

                                                                     AAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGCAACAATACCAAACGCCGGAAGTGAG                          <  SRR4302543.6110291/94‑1 (MQ=60)

                                                                     AAGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGCAACAATACCAAACGCCGGAAGTGAG                          <  SRR4302543.730592/94‑1 (MQ=60)

                                                                      AGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGCAACAATACCAAACGCCGGAAGTGAGT                         <  SRR4302543.2340013/94‑1 (MQ=60)

                                                                      AGCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGCAACAATACCAAACGCCGGAAGTGAGT                         <  SRR4302543.3590830/94‑1 (MQ=60)

                                                                       GCGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGCAACAATACCAAACGCCGGAAGTGAGTC                        <  SRR4302543.1193306/94‑1 (MQ=60)

                                                                        CGCCCCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGCAACAATACCAAACGCCGGAAGTGAGTCC                       <  SRR4302543.247848/94‑1 (MQ=60)

                                                                        CGCACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGCAACAATACCAAACGCCGGAAGTGAGTCC                       >  SRR4302543.108025/1‑94 (MQ=60)

                                                                          CACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGCAACAATACCAAACGCCGGAAGTGAGTCCCC                     >  SRR4302543.1859191/1‑94 (MQ=60)

                                                                           ACCCAGCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGCAACAATACCAAACGCCGGAAGTGAGTCCCCG                    >  SRR4302543.3370648/1‑94 (MQ=60)

                                                                                GCTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGCAACAATACCAAACGCCGGAAGTGAGTCCCCGACCAG               <  SRR4302543.4136300/94‑1 (MQ=60)

                                                                                 CTCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGCAACAATACCAAACGCCGGAAGTGAGTCCCCGACCAGC              <  SRR4302543.2971154/94‑1 (MQ=60)

                                                                                  ccgggGGCAGGGCGATTGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGCAACAATACCAAACGCCGGAAGTGAGTCCCCGACCAGCG             <  SRR4302543.634503/89‑1 (MQ=60)

                                                                                  TCGGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGCAACAATACCAAACGCCGGAAGTGAGTCCCCGACCAGCG             <  SRR4302543.634502/94‑1 (MQ=60)

                                                                                    GGCGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGCAACAATACCAAACGCCGGAAGTGAGTCCCCGACCAGCGCC           >  SRR4302543.1960031/1‑94 (MQ=60)

                                                                                      CGGCAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGCAACAATACCAAACGCCGGAAGTGAGTCCCCGACCAGCGCCAG         <  SRR4302543.5030387/94‑1 (MQ=60)

                                                                                         CAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGCAACAATACCAAACGCCGGAAGTGAGTCCCCGACCAGCGCCAGACT      <  SRR4302543.2584305/94‑1 (MQ=60)

                                                                                         CAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGCAACAATACCAAACGCCGGAAGTGAGTCCCCGACCAGCGCCAGACT      <  SRR4302543.5619549/94‑1 (MQ=60)

                                                                                         CAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGCAACAATACCAAACGCCGGAAGTGAGTCCCCGACCAGCGCCAGACT      >  SRR4302543.7739853/1‑94 (MQ=60)

                                                                                         CAGGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGCAACAATACCAAACGCCGGAAGTGAGTCCCCGACCAGCGCCAGACT      >  SRR4302543.4159399/1‑94 (MQ=60)

                                                                                           GGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGCAACAATACCAAACGCCGGAAGTGAGTCCCCGACCAGCGCCAGACTGT    >  SRR4302543.6208453/1‑94 (MQ=60)

                                                                                           GGGCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGCAACAATACCAAACGCCGGAAGTGAGTCCCCGACCAGCGCCAGACTGT    >  SRR4302543.2182916/1‑94 (MQ=60)

                                                                                             GCGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGCAACAATACCAAACGCCGGAAGTGAGTCCCCGACCAGCGCCAGACTGTTC  <  SRR4302543.3026880/94‑1 (MQ=60)

CGCTAATGGGGAAATAAATCCGTAAGCCAATAAAATGCCGAGGAAAGTCCCCACCATCGCATGTGCGATAAGCGCACCCAGCTCGGCGGCAGGACGATCGGCTGAACCTAACGCGTGAACGACCCCCATTACAGCCGCAACAATACCAAACGCCGGAAGTGAGTCCCCGACCAGCGCCAGACTGTTC  >  NC_000913/1974492‑1974678

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 2 ≤` `ATCG/ATCG` `< 24 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`