Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I1 R1 1696 279.3 15874187 97.8% 15524954 93.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 2,111,589 A→G M254T (ATG→ACG)  galF ← putative a UDP‑gal transferase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009132,111,5890AG100.0% 734.7 / NA 230M254T (ATG→ACG) galFputative a UDP‑gal transferase
Reads supporting (aligned to +/- strand):  ref base A (0/0);  new base G (129/101);  total (129/101)

Only 100 of 234 total aligned reads displayed.

CCTTCTTTCAGGTTGCGTAGGCCATACTTCACAAACGCCTGCATATAGCCCATTTTTTTGCCGCAGTCGTAACTGTCGCCGGTCATCAGCATTGCATCAACGGATTGTTTTTTCGCCAGCTCGGCAATAGCATCAGTCAGCTGAATACGTCCCCATGCACCAGGCTGAGTACGTTCCAGT  >  NC_000913/2111499‑2111678
                                                                                          |                                                                                         
ccTTCTTTCAGGTTGCGTAGGCCATACTTCACAAACGCCTGCATATAGCCCATTTTTTTGCCGCAGTCGTAACTGTCGCCGGTCATCAGCGtt                                                                                         <  1:7322490/93‑1 (MQ=255)
ccTTCTTTCAGGTTGCGTAGGCCATACTTCACAAACGCCTGCATATAGCCCATTTTTTTGCCGCAGTCGTAACTGTCGCCGGTCATCAGCGtt                                                                                         >  2:5996512/1‑93 (MQ=255)
ccTTCTTTCAGGTTGCGTAGGCCATACTTCACAAACGCCTGCATATAGCCCATTTTTTTGCCGCAGTCGTAACTGTCGCCGGTCATCAGCGtt                                                                                         <  2:7208101/93‑1 (MQ=255)
 cttcttTCAGGTTGCGTAGGCCATACTTCACAAACGCCTGCATATAGCCCATTTTTTTGCCGCAGTCGTAACTGTCGCCGGTCATCAGCGTTg                                                                                        >  2:6792243/1‑93 (MQ=255)
  ttcttTCAGGTTGCGTAGGCCATACTTCACAAACGCCTGCATATAGCCCATTTTTTTGCCGCAGTCGTAACTTTCGCCGGTCATCAGCGTTGc                                                                                       >  2:4933060/1‑93 (MQ=255)
  ttcttTCAGGTTGCGTAGGCCATACTTCACAAACGCCTGCATATAGCCCATTTTTTTGCCGCAGTCGTAACTGTCGCCGGTCATCAGCGTTGc                                                                                       >  1:2076195/1‑93 (MQ=255)
  ttcttTCAGGTTGCGTAGGCCATACTTCACAAACGCCTGCATATAGCCCATTTTTTTGCCGCAGTCGTAACTGTCGCCGGTCATCAGCGTTGc                                                                                       >  1:533240/1‑93 (MQ=255)
   tcttTCAGGTTGCGTAGGCCATACTTCACAAACGCCTGCATATAGCCCATTTTTTTGCCGCAGTCGTAACTGTCGCCGGTCATCAGCGTTGCa                                                                                      <  2:1303043/93‑1 (MQ=255)
    cttTCAGGTTGCGTAGGCCATACTTCACAAACGCCTGCATATAGCCCATTTTTTTGCCGCAGTCGTAACTGTCGCCGGTCATCAGCGTTGCAt                                                                                     <  2:3010041/93‑1 (MQ=255)
    cttTCAGGTTGCGTAGGCCATACTTCACAAACGCCTGCATATAGCCCATTTTTTTGCCGCAGTCGTAACTGTCGCCGGTCATCAGCGTTGCAt                                                                                     >  2:1598878/1‑93 (MQ=255)
    cttTCAGGTTGCGTAGGCCATACTTCACAAACGCCTGCATATAGCCCATTTTTTTGCCGCAGTCGTAACTGTCGCCGGTCATCAGCGCTGCAt                                                                                     >  1:6043032/1‑93 (MQ=255)
     tttCAGGTTGCGTAGGCCATACTTCACAAACGCCTGCATATAGCCCATTTTTTTGCCGCAGTCGTAACTGTCGCCGGTCATCAGCGTTGCATc                                                                                    >  2:400646/1‑93 (MQ=255)
     tttCAGGTTGCGTAGGCCATACTTCACAAACGCCTGCATATAGCCCATTTTTTTGCCGCAGTCGTAACTGTCGCCGGTCATCAGCGTTGCATc                                                                                    >  1:5677232/1‑93 (MQ=255)
     tttCAGGTTGCGTAGGCCATACTTCACAAACGCCTGCATATAGCCCATTTTTTTGCCGCAGTCGTAACTGTCGCCGGTCATCAGCGTTGCATc                                                                                    <  1:4362707/93‑1 (MQ=255)
     tttCAGGTTGCGTAGGCCATACTTCACAAACGCCTGCATATAGCCCATTTTTTTGCCGCAGTCGTAACTGTCGCCGGTCATCAGCGTTGCATc                                                                                    <  1:492619/93‑1 (MQ=255)
      ttCAGGTTGCGTAGGCCATACTTCACAAACGCCTGCATATAGCCCATTTTTTTGCCGCAGTCGTAACTGTCGCCGGTCATCAGCGTTGCATCa                                                                                   >  1:2945262/1‑93 (MQ=255)
         aGGTTGCGTAGGCCATACTTCACAAACGCCTGCATATAGCCCATTTTTTTGCCGCAGTCGTAACTGTCGCCGGTCATCAGCGTTGCATCAACg                                                                                <  1:7550547/93‑1 (MQ=255)
           gtagCGTAGGCCATACTTCACAAACGCCTGCATATAGCACATTTTTTTGCCGCAGTCGTAACTGTCGCCGGTCATCAGCGTTGCATCAACGGa                                                                              <  2:7021645/90‑1 (MQ=255)
           gTTGCGTAGGCCATACTTCACAAACGCCTGCATATAGCCCATTTTTTTGCCGCAGTCGTAACTGTCGCCGGTCATCAGCGTTGCATCAACGGa                                                                              >  1:2538714/1‑93 (MQ=255)
                gTAGGCCATACTTCACAAACGCCTGCATATAGCCCATTTTTTTGCCGCAGTCGTAACTGTCGCCGGTCATCAGCGTTGCATCAACGGATTGtt                                                                         <  2:4154085/93‑1 (MQ=255)
                 tAGGCCATACTTCACAAACGCCTGCATATAGCCCATTTTTTTGCCGCAGTCGTAACTGTCGCCGGTCATCAGCGTTGCATCAACGGATTGttt                                                                        <  2:299769/93‑1 (MQ=255)
                  aGGCCATACTTCACAAACGCCTGCATATAGCCCATTTTTTTGCCGCAGTCGTAACTGTCGCCGGTCATCAGCGTTGCATCAACGGATTGtttt                                                                       >  2:5426822/1‑93 (MQ=255)
                   ggCCATACTTCACAAACGCCTGCATATAGCCCATTTTTTTGCCGCAGTCGTAACTGTCGCCGGTCATCAGCGTTGCATCAACGGATTGttttt                                                                      <  2:2037099/93‑1 (MQ=255)
                    gCCATACTTCACAAACGCCTGCATATAGCCCATTTTTTTGCCGCAGTCGTAACTGTCGCCGGTCATCAGCGTTGCATCAACGGATTGtttttt                                                                     >  2:5832078/1‑93 (MQ=255)
                    gCCATACTTCACAAACGCCTGCATATAGCCCATTTTTTTGCCGCAGTCGTAACTGTCGCCGGTCATCAGCGTTGCATCAACGGATTGtttttt                                                                     <  1:3976912/93‑1 (MQ=255)
                     ccATACTTCACAAACGCCTGCATATAGCCCATTTTTTTGCCGCAGTCGTAACTGTCGCCGGTCATCAGCGTTGCATCAACGGATTGTTTTTTc                                                                    >  2:3823163/1‑93 (MQ=255)
                     ccATACTTCACAAACGCCTGCATATAGCCCATTTTTTTGCCGCAGTCGTAACTGTCGCCGGTCATCAGCGTTGCATCAACGGATTGTTTTTTc                                                                    <  1:1242768/93‑1 (MQ=255)
                      cATACTTCACAAACGCCTGCATATAGCCCATTTTTTTGCCGCAGTCGTAACTGTCGCCGGTCATCAGCGTTGCATCAACGGATTGTTTTTTCg                                                                   <  2:7516352/93‑1 (MQ=255)
                       aTACTTCACAAACGCCTGCATATAGCCCATTTTTTTGCCGCAGTCGTAGCTGTCGCCGGTCATCAGCGTTGCATCAACGGATTGTTTTTTCGc                                                                  >  1:3828623/1‑93 (MQ=255)
                       aTACTTCACAAACGCCTGCATATAGCCCATTTTTTTGCCGCAGTCGTAACTGTCGCCGGTCATCAGCGTTGCATCAACGGATTGTTTTTTCGc                                                                  <  1:2274697/93‑1 (MQ=255)
                        tACTTCACAAACGCCTGCATATAGCCCATTTTTTTGCCGCAGTCGTAACTGTCGCCGGTCATCAGCGTTGCATCAACGGATTGTTTTTTCGcc                                                                 >  1:1435647/1‑93 (MQ=255)
                         aCTTCACAAACGCCTGCATATAGCCCATTTTTTTGCCGCAGTCGTAACTGTCGCCGGTCATCAGCGTTGCATCAACGGATTGTTTTTTCGCCa                                                                <  1:4798596/93‑1 (MQ=255)
                         aCTTCACAAACGCCTGCATATAGCCCATTTTTTTGCCGCAGTCGTAACTGTCGCCGGTCATCAGCGTTGCATCAACGGATTGTTTTTTCGCCa                                                                <  1:3713871/93‑1 (MQ=255)
                         aCTTCACAAACGCCTGCATATAGCCCATTTTTTTGCCGCAGTCGTAACTGTCGCCGGTCATCAGCGTTGCATCAACGGATTGTTTTTTCGCCa                                                                <  1:6934550/93‑1 (MQ=255)
                           ttCACAATCGCCTGCATATAGCCTATTTTTTTGCCGCAGTCGTAACTGTCGCCGGTCATCAGCGTTGCATCAACGGATTGTTTTTTCGCCAGc                                                              <  1:36283/93‑1 (MQ=255)
                              acaAACGCCTGCATATAGCCCATTTTTTTGCCGCAGTCGTAACTGTCGCCGGTCATCAGCGTTGCATCAACGGATTGTTTTTTCGCCAGCTCg                                                           <  1:1132206/93‑1 (MQ=255)
                                  aCGCCTGCATATAGCCCATTTTTTTGCCGCAGTCGTAACTGTCGCCGGTCATCAGCGTTGCATCAACGGATTGTTTTTTCGCCAGCTCGGCaa                                                       <  2:7754010/93‑1 (MQ=255)
                                  aCGCCTGCATATAGCCCATTTTTTTGCCGCAGTCGTAACTGTCGCCGGTCATCAGCGTTGCATCAACGGATTGTTTTTTCGCCAGCTCGGCaa                                                       <  2:2955386/93‑1 (MQ=255)
                                  aCGCCTGCATATAGCCCATTTTTTTGCCGCAGTCGTAACTGTCGCCGGTCATCAGCGTTGCATCAACGGATTGTTTTTGCGCCAGCTCGGCaa                                                       <  2:7912736/93‑1 (MQ=255)
                                   cGCCTGCATATAGCCCATTTTTTTGCCGCAGTCGTAACTGTCGCCGGTCATCAGCGTTGCATCAACGGATTGTTTTTTCGCCAGCTCGGCAAt                                                      <  2:5114238/93‑1 (MQ=255)
                                    gCCTGCATATAGCCCATTTTTTTGCCGCAGTCGTAACTGTCGCCGGTCATCAGCGTTGCATCAACGGATTGTTTTTTCGCCAGCTCGGCAATa                                                     <  1:2435823/93‑1 (MQ=255)
                                     ccTGCATATAGCCCATTTTTTTGCCGCAGTCGTAACTGTCGCCGGTCATCAGCGTTGCATCAACGGATTGTTTTTTCGCCAGCTCGGCAATAg                                                    <  2:4842192/93‑1 (MQ=255)
                                      cTGCATATAGCCCATTTTTTTGCCGCAGTCGTAACTGTCGCCGGTCATCAGCGTTGCATCAACGGATTGTTTTTTCGCCAGCTCGGCAATAGc                                                   >  1:1051856/1‑93 (MQ=255)
                                      cTGCATATAGCCCATTTTTTTGCCGCAGTCGTAACTGTCGCCGGTCATCAGCGTTGCATCAACGGATTGTTTTTTCGCCAGCTCGGCAATAGc                                                   <  2:3829219/93‑1 (MQ=255)
                                      cTGCATATAGCCCATTTTTTTGCCGCAGTCGTAACTGTCGCCGGTCATCAGCGTTGCATCAACGGATTGTTTTTTCGCCAGCTCGGCAATAGc                                                   >  1:3498633/1‑93 (MQ=255)
                                      cTGCATATAGCCCATTTTTTTGCCGCAGTCGTAACTGTCGCCGGTCATCAGCGTTGCATCAACGGATTGGTTTTTCGCCAGCTCGGCAATAGc                                                   >  2:4284553/1‑93 (MQ=255)
                                       tGCATATAGCCCATTTTTTTGCCGCAGTCGTAACTGTCGCCGGTCATCAGCGTTGCATCAACGGATTGTTTTTTCGCCAGCTCGGCAATAGCa                                                  >  1:7893936/1‑93 (MQ=255)
                                       tGCATATAGCCCATTTTTTTGCCGCAGTCGTAACTGTCGCCGGTCATCAGCGTTGCATCAACGGATTGTTTTTTCGCCAGCTCGGCAATAGCa                                                  >  1:1373575/1‑93 (MQ=255)
                                        gCATATAGCCCATTTTTTTGCCGCAGTCGTAACTGTCGCCGGTCATCAGCGTTGCATCAACGGATTGTTTTTTCGCCAGCTCGGCAATAGCAt                                                 <  1:5090566/93‑1 (MQ=255)
                                         cATATAGCCCATTTTTTTGCCGCAGTCGTAACTGTCGCCGGTCATCAGCGTTGCATCAACGGATTGTTTTTTCGCCAGCTCGGCAATAGCAtc                                                <  2:3870447/93‑1 (MQ=255)
                                          atatAGCCCATTTTTTTGCCGCAGTCGTAACTGTCGCCGGTCATCAGCGTTGCATCAACGGATTGTTTTTTCGCCAGCTCGGCAATAGCAtca                                               >  2:2267992/1‑93 (MQ=255)
                                          atatAGCCCATTTTTTTGCCGCAGTCGTAACTGTCGCCGGTCATCAGCGTTGCATCAACGGATTGTTTTTTCGCCAGCTCGGCAATAGCAtca                                               <  1:5593203/93‑1 (MQ=255)
                                          atatAGCCCATTTTTTTGCCGCAGTCGTAACTGTCGCCGGTCATCAGCGTTGCATCAACGGATTGGTTTTTCGCCAGCTCGGCAATAGCAtca                                               >  1:7244061/1‑93 (MQ=255)
                                           tataGCCCATTTTTTTGCCGCAGTCGTAACTGTCGCCGGTCATCAGCGTTGCATCAACGGATTGTTTTTTCGCCAGCTCGGCAATAGCAtcag                                              >  2:4127778/1‑93 (MQ=255)
                                           tataGCCCATTTTTTTGCCGCAGTCGTAACTGTCGCCGGTCATCAGCGTTGCATCAACGGATTGTTTTTTCGCCAGCTCGGCAATAGCAtcag                                              >  1:7178911/1‑93 (MQ=255)
                                            ataGCCCATTTTTTTGCCGCAGTCGTAACTGTCGCCGGTCATCAGCGTTGCATCAACGGATTGTTTTTTCGCCAGCTCGGCAATAGCAtcagt                                             <  2:6077382/93‑1 (MQ=255)
                                               gCCCATTTTTTTGCCGCAGTCGTAACTGTCGCCGGTCATCAGCGTTGCATCAACGGATTGTTTTTTCGCCAGCTCGGCAATAGCAtcagtcag                                          >  2:6477709/1‑93 (MQ=255)
                                                cccATTTTTTTGCCGCAGTCGTAACTGTCGCCGGTCATCAGCGTTGCATCAACGGATTGTTTTTTCGCCAGCTCGGCAATAGCATCAGTCAGc                                         >  2:6435948/1‑93 (MQ=255)
                                                 ccATTTTTTTGCCGCAGTCGTAACTGTCGCCGGTCATCAGCGTTGCATCAACGGATTGTTTTTTCGCCAGCTCGGCAATAGCATCAGTCAGCt                                        <  2:5987134/93‑1 (MQ=255)
                                                  cATTTTTTTGCCGCAGTCGTAACTGTCGCCGGTCATCAGCGTTGCATCAACGGATTGTTTTTTCGCCAGCTCGGCAATAGCATCAGTCAGCTg                                       <  2:902877/93‑1 (MQ=255)
                                                   aTTTTTTTGCCGCAGTCGTAACTGTCGCCGGTCATCAGCGTTGCATCAACGGATTGTTTTTTCGCCAGCTCGGCAATAGCATCAGTCAGCTGa                                      <  2:5772734/93‑1 (MQ=255)
                                                    tttttttGCCGCAGTCGTAACTGTCGCCGGTCATCAGCGTTGCATCAACGGATTGTTTTTTCGCCAGCTCGGCAATAGCATCAGTCAGCTGaa                                     <  1:7066491/93‑1 (MQ=255)
                                                    tttttttGCCGCAGTCGTAACTGTCGCCGGTCATCAGCGTTGCATCAACGGATTGTTTTTTCGCCAGCTCGGCAATAGCATCAGTCAGCTGaa                                     >  1:3053250/1‑93 (MQ=255)
                                                    tttttttGCCGCAGTCGTAACTGTCGCCGGTCATCAGCGTTGCATCAACGGATTGTTTTTTCGCCAGCTCGGCAATAGCATCAGTCAGCTGaa                                     >  1:4120727/1‑93 (MQ=255)
                                                    tttttttGCCGCAGTCGTAACTGTCGCCGGTCATCAGCGTTGCATCAACGGATTGTTTTTTCGCCAGCTCGGCAATAGCATCAGTCAGCTGaa                                     >  2:4506137/1‑93 (MQ=255)
                                                     ttttttGCCGCAGTCGTAACTGTCGCCGGTCATCAGCGTTGCATCAACGGATTGTTTTTTCGCCAGATCGGCAATAGCATCAGTCAGCTGAAt                                    <  1:93689/93‑1 (MQ=255)
                                                      tttttGCCGCAGTCGTAACTGTCGCCGGTCATCAGCGTTGCATCAACGGATTGTTTTTTCGCCAGCTCGGCAATAGCATCAGTCAGCTGAATa                                   <  1:6420829/93‑1 (MQ=255)
                                                        tttGCCGCAGTCGTAACTGTCGCCGGTCATCAGCGTTGCATCAACGGATTGTTTTTTCGCCAGCTCGGCAATAGCATCAGTCAGCTGAATACg                                 <  2:1224055/93‑1 (MQ=255)
                                                         ttGCCGCAGTCGTAACTGTCGCCGGTCATCAGCGTTGCATCAACGGATTGTTTTTTCGCCAGCTCGGCAATAGCATCAGTCAGCTGAATACGt                                >  1:6570490/1‑93 (MQ=255)
                                                          tGCCGCAGTCGTAACTGTCGCCGGTCATCAGCGTTGCATCAACGGATTGTTTTTTCGCCAGCTCGGCAATAGCATCAGTCAGCTGAATACGTc                               <  1:6790780/93‑1 (MQ=255)
                                                            ccGCAGTCGTAACTGTCGCCGGTCATCAGCGTTGCATCAACGTATTGTTTTTTCGCCAGCTCGGCAATAGCATCAGTCAGCTGAATACGTccc                             <  1:7624339/93‑1 (MQ=255)
                                                                aGTCGTAACTGTCGCCGGTCATCAGCGTTGCATCAACGGATTGTTTTTTCGCCAGCTCGGCAATAGCATCAGTCAGCTGAATACGTCCCCacg                         <  2:3280639/93‑3 (MQ=255)
                                                                 gTCGTAACTGTCGCCGGTCATCAGCGTTGCATCAACGGATTGTTTTTTCGCCAGCTCGGCAATAGCATCAGTCAGCTGAATACGTCCCCACGc                        <  2:4753925/93‑1 (MQ=255)
                                                                  tCGTAACTGTCGCCGGTCATCAGCGTTGCATCAACGGATTGTTTTTTCGCCAGCTCGGCAATAGCATCAGTCAGCTGAATACGTCCCCACGCa                       >  2:6813615/1‑93 (MQ=255)
                                                                   cGTAACTGTCGCCGGTCATCAGCGTTGCATCAACGGATTGTTTTTTCGCCAGCTCGGCAATAGCATCAGTCAGCTGAATACGTCCCCACGCAc                      <  2:1068577/93‑1 (MQ=255)
                                                                    gTAACTGTCGCCGGTCATCAGCGTTGCATCAACGGATTGTTTTTTCGCCAGCTCGGCAATAGCATCAGTCAGCTGAATACGTCCCCACGCAcc                     >  2:5458311/1‑93 (MQ=255)
                                                                     tAACTGTCGCCGGTCATCAGCGTTGCATCAACGGATTGTTTTTTCGCCAGCTCGGCAATAGCATCAGTCAGCTGAATACGTCCCCACGCACCa                    >  1:6638192/1‑93 (MQ=255)
                                                                     tAACTGTCGCCGGTCATCAGCGTTGCATCAACGGATTGTTTTTTCGCCAGCTCGGCAATAGCATCAGTCAGCTGAATACGTCCCCACGCACCa                    >  1:6235740/1‑93 (MQ=255)
                                                                     tAACTGTCGCCGGTCATCAGCGTTGCATCAACGGATTGTTTTTTCGCCAGCTCGGCAATAGCATCAGTCAGCTGAATACGTCCCCACGCACCa                    >  2:5619825/1‑93 (MQ=255)
                                                                     tAACTGTCGCCGGTCATCAGCGTTGCATCAACGGATTGTTTTTTCGCCAGCTCGGCAATAGCATCAGTCAGCTGAATACGTCCCCACGCACCa                    >  2:3640394/1‑93 (MQ=255)
                                                                     tAACTGTCGCCGGTCATCAGCGTTGCATCAACGGATTGTTTTTTCGCCAGCTCGGCAATAGCATCAGTCAGCTGAATACGTCCCCACGCACCa                    <  1:7436501/93‑1 (MQ=255)
                                                                     tAACTGTCGCCGGTCATCAGCGTTGCATCAACGGATTGTTTTTTCGCCAGCTCGGCAATAGCATCAGTCAGCTGAATACGTCCCCACGCACCa                    >  2:4429459/1‑93 (MQ=255)
                                                                         tGTCGCCGGTCATCAGCGTTGCATCAACGGATTGTTTTTTCGCCAGCTCGGCAATAGCATCAGTCAGCTGAATACGTCCCCACGCACCAGGCt                <  2:5124131/93‑1 (MQ=255)
                                                                         tGTCGCCGGTCATCAGCGTTGCATCAACGGATTGTTTTTTCGCCAGCTCGGCAATAGCATCAGTCAGCTGAATACGTCCCCACGCACCAGGCt                <  2:7149427/93‑1 (MQ=255)
                                                                          gTCGCCGGTCATCAGCGTTGCATCAACGGATTGTTTTTTCGCCAGCTCGGCAATAGCATCAGTCAGCTGAATACGTCCCCACGCACCAGGCTg               >  2:2342423/1‑93 (MQ=255)
                                                                          gTCGCCGGTCATCAGCGTTGCATCAACGGATTGTTTTTTCGCCAGCTCGGCAATAGCATCAGTCAGCTGAATACGTCCCCACGCACCAGGCTg               >  2:730426/1‑93 (MQ=255)
                                                                          gTCGCCGGTCATCAGCGTTGCATCAACGGATTGTTTTTTCGCCAGCTCGGCAATAGCATCAGTCAGCTGAATACGTCCCCACACACCAGGCTg               >  2:845959/1‑93 (MQ=255)
                                                                           tCGCCGGTCATCAGCGTTGCATCAACGGATTGTTTTTTCGCCAGCTCGGCAATAGCATCAGTCAGCTGAATACGTCCCCACGCACCAGGCTGa              <  2:151940/93‑1 (MQ=255)
                                                                           tCGCCGGTCATCAGCGTTGCATCAACGGATTGTTTTTTCGCCAGCTCGGCAATAGCATCAGTCAGCTGAATACGTCCCCACGCACCAGGCTGa              <  1:5898355/93‑1 (MQ=255)
                                                                             gCCGGTCATCAGCGTTGCATCAACGGATTGTTTTTTCGCCAGCTCGGCAATAGCATCAGTCAGCTGAATACGTCCCCACGCCCCAGGCTGAGt            <  1:7784338/93‑1 (MQ=255)
                                                                             gCCGGTCATCAGCGTTGCATCAACGGATTGTTTTTTCGCCAGCTCGGCAATAGCATCAGTCAGCTGAATACGTCCCCACGCCACAGGCTGAGt            >  2:4894971/1‑93 (MQ=255)
                                                                                ggTCATCAGCGTTGCATCAACGGATTGTTTTTTCGCCAGCTCGGCAATAGCATCAGTCAGCTGAATACGTCCCCACGCACCAGGCTGAGTACg         <  1:1645292/93‑1 (MQ=255)
                                                                                 gTCATCAGCGTTGCATCAACGGATTGTTTTTTCGCCAGCTCGGCAATAGCATCAGTCAGCTGAATACGTCCCCACGCACCAGGCTGAGTACGt        >  1:3654637/1‑93 (MQ=255)
                                                                                 gTCATCAGCGTTGCATCAACGGATTGTTTTTTCGCCAGCTCGGCAATAGCATCAGTCAGCTGAATACGTCCCCACGCACCAGGCTGAGTACGt        <  1:2133542/93‑1 (MQ=255)
                                                                                  tcatcaGCGTTGCATCAACGGATTGTTTTTTCTCCAGCTCGGCAATAGCATCAGTCAGCTGAATACGTCCCCACGCACCAGGCTGAGTACGtt       >  1:3126158/1‑93 (MQ=255)
                                                                                  tcatcaGCGTTGCATCAACGGATTGTTTTTTCGCCAGCTCGGCAATAGCATCAGTCAGCTGAATACGTCCCCACGCACCAGGCTGAGTACGtt       >  2:2797067/1‑93 (MQ=255)
                                                                                  tcatcaGCGTTGCATCAACGGATTGTTTTTTCGCCAGCTCGGCAATAGCATCAGTCAGCTGAATACGTCCCCACGCACCAGGCTGAGTACGtt       >  1:1868882/1‑93 (MQ=255)
                                                                                    atcaGCGTTGCATCAACGGATTGTTTTTTCGCCAGCTCGGCAATAGCATCAGTCAGCTGAATACGTCCCCACGCACCAGGCTGAGTACGTTcc     <  2:6368923/93‑1 (MQ=255)
                                                                                    atcaGCGTTGCATCAACGGATTGTTTTTTCGCCAGCTCGGCAATAGCATCAGTCAGCTGAATACGTCCCCACGCACCAGGCTGAGTACGTTcc     >  2:5292203/1‑93 (MQ=255)
                                                                                       aGCGTTGCATCAACGGATTGTTTTTTCGCCAGCTCGGCAATAGCATCAGTCAGCTGAATACGTCCCCACGCACCAGGCTGAGTACGTTCCAGt  <  2:1974441/93‑1 (MQ=255)
                                                                                          |                                                                                         
CCTTCTTTCAGGTTGCGTAGGCCATACTTCACAAACGCCTGCATATAGCCCATTTTTTTGCCGCAGTCGTAACTGTCGCCGGTCATCAGCATTGCATCAACGGATTGTTTTTTCGCCAGCTCGGCAATAGCATCAGTCAGCTGAATACGTCCCCATGCACCAGGCTGAGTACGTTCCAGT  >  NC_000913/2111499‑2111678

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

BRESEQ :: bam2aln output
CCCCTTCTTTCAGGTTGCGTAGGCCATACTTCACAAACGCCTGCATATAGCCCATTTTTTTGCCGCAGTCGTAACTGTCGCCGGTCATCAGCATTGCATCAACGGATTGTTTTTTCGCCAGCTCGGCAATAGCATCAGTCAGCTGAATACGTCCCCATGCACCAGGCTGAGTACGTTCCAGTTCCG  >  NC_000913/2111497‑2111682
                                                                                            |                                                                                             
CCCCTTCTTTCAGGTTGCGTAGGCCATACTTCACAAACGCCTGCATATAGCCCATTTTTTTGCCGCAGTCGTAACTGTCGCCGGTCATCAGCGT                                                                                              >  SRR4302543.1204419/1‑94 (MQ=60)
 CCCTTCTTTCAGGTTGCGTAGGCCATACTTCACAAACGCCTGCATATAGCCCATTTTTTTGCCGCAGTCGTAACTGTCGCCGGTCATCAGCGTT                                                                                             <  SRR4302543.762552/94‑1 (MQ=60)
 CCCTTCTTTCAGGTTGCGTAGGCCATACTTCACAAACGCCTGCATATAGCCCATTTTTTTGCCGCAGTCGTAACTGTCGCCGGTCATCAGCGTT                                                                                             <  SRR4302543.3465562/94‑1 (MQ=60)
 CCCTTCTTTCAGGTTGCGTAGGCCATACTTCACAAACGCCTGCATATAGCCCATTTTTTTGCCGCAGTCGTAACTGTCGCCGGTCATCAGCGTT                                                                                             >  SRR4302543.6286669/1‑94 (MQ=60)
 CCCTTCTTTCAGGTTGCGTAGGCCATACTTCACAAACGCCTGCATATAGCCCATTTTTTTGCCGCAGTCGTAACTGTCGCCGGTCATCAGCGTT                                                                                             >  SRR4302543.2276350/1‑94 (MQ=60)
  CCTTCTTTCAGGTTGCGTAGGCCATACTTCACAAACGCCTGCATATAGCCCATTTTTTTGCCGCAGTCGTAACTGTCGCCGGTCATCAGCGTTG                                                                                            >  SRR4302543.7581364/1‑94 (MQ=60)
  CCTTCTTTCAGGTTGCGTAGGCCATACTTCACAAACGCCTGCATATAGCCCATTTTTTTGCCGCAGTCGTAACTGTCGCCGGTCATCAGCGTTG                                                                                            <  SRR4302543.7393009/94‑1 (MQ=60)
   CTTCTTTCAGGTTGCGTAGGCCATACTTCACAAACGCCTGCATATAGCCCATTTTTTTGCCGCAGTCGTAACTGTCGCCGGTCATCAGCGTTGC                                                                                           >  SRR4302543.6698056/1‑94 (MQ=60)
   CTTCTTTCAGGTTGCGTAGGCCATACTTCACAAACGCCTGCATATAGCCCATTTTTTTGCCGCAGTCGTAACTGTCGCCGGTCATCAGCGTTGC                                                                                           >  SRR4302543.2094740/1‑94 (MQ=60)
   CTTCTTTCAGGTTGCGTAGGCCATACTTCACAAACGCCTGCATATAGCCCATTTTTTTGCCGCAGTCGTAACTGTCGCCGGTCATCAGCGTTGC                                                                                           >  SRR4302543.5352036/1‑94 (MQ=60)
   CTTCTTTCAGGTTGCGTAGGCCATACTTCACAAACGCCTGCATATAGCCCATTTTTTTGCCGCAGTCGTAACTGTCGCCGGTCATCAGCGTTGC                                                                                           >  SRR4302543.538180/1‑94 (MQ=60)
     TCTTTCAGGTTGCGTAGGCCATACTTCACAAACGCCTGCATATAGCCCATTTTTTTGCCGCAGTCGTAACTGTCGCCGGTCATCAGCGTTGCAT                                                                                         >  SRR4302543.4554449/1‑94 (MQ=60)
     TCTTTCAGGTTGCGTAGGCCATACTTCACAAACGCCTGCATATAGCCCATTTTTTTGCCGCAGTCGTAACTGTCGCCGGTCATCAGCGTTGCAT                                                                                         >  SRR4302543.6491596/1‑94 (MQ=60)
     TCTTTCAGGTTGCGTAGGCCATACTTCACAAACGCCTGCATATAGCCCATTTTTTTGCCGCAGTCGTAACTGTCGCCGGTCATCAGCGCTGCAT                                                                                         >  SRR4302543.6100229/1‑94 (MQ=60)
      CTTTCAGGTTGCGTAGGCCATACTTCACAAACGCCTGCATATAGCCCATTTTTTTGCCGCAGTCGTAACTGTCGCCGGTCATCAGCGTTGCATC                                                                                        >  SRR4302543.5729054/1‑94 (MQ=60)
      CTTTCAGGTTGCGTAGGCCATACTTCACAAACGCCTGCATATAGCCCATTTTTTTGCCGCAGTCGTAACTGTCGCCGGTCATCAGCGTTGCATC                                                                                        >  SRR4302543.1383689/1‑94 (MQ=60)
       TTTCAGGTTGCGTAGGCCATACTTCACAAACGCCTGCATATAGCCCATTTTTTTGCCGCAGTCGTAACTGTCGCCGGTCATCAGCGTTGCATCA                                                                                       <  SRR4302543.497172/94‑1 (MQ=60)
       TTTCAGGTTGCGTAGGCCATACTTCACAAACGCCTGCATATAGCCCATTTTTTTGCCGCAGTCGTAACTGTCGCCGGTCATCAGCGTTGCATCA                                                                                       <  SRR4302543.4402231/94‑1 (MQ=60)
       TTTCAGGTTGCGTAGGCCATACTTCACAAACGCCTGCATATAGCCCATTTTTTTGCCGCAGTCGTAACTGTCGCCGGTCATCAGCGTTGCATCA                                                                                       <  SRR4302543.4402230/94‑1 (MQ=60)
       TTTCAGGTTGCGTAGGCCATACTTCACAAACGCCTGCATATAGCCCATTTTTTTGCCGCAGTCGTAACTGTCGCCGGTCATCAGCGTTGCATCA                                                                                       >  SRR4302543.2972003/1‑94 (MQ=60)
           AGGTTGCGTAGGCCATACTTCACAAACGCCTGCATATAGCCCATTTTTTTGCCGCAGTCGTAACTGTCGCCGGTCATCAGCGTTGCATCAACGG                                                                                   <  SRR4302543.7622467/94‑1 (MQ=60)
            GGTTGCGTAGGCCATACTTCACAAACGCCTGCATATAGCCCATTTTTTTGCCGCAGTCGTAACTGTCGCCGGTCATCAGCGTTGCATCAACGGA                                                                                  <  SRR4302543.3757072/94‑1 (MQ=60)
            GGTTGCGTAGGCCATACTTCACAAACGCCTGCATATAGCCCATTTTTTTGCCGCAGTCGTAACTGTCGCCGGTCATCAGCGTTGCATCAACGGA                                                                                  >  SRR4302543.2561851/1‑94 (MQ=60)
              GTGCGTAGTCCATACTTCACAAACGCCTGCATATAGCCCATTTTTTTGCCGCAGTCGTAACTGTCGCCGGTCATCAGCGTTGCATCAACGGATT                                                                                <  SRR4302543.2382670/94‑1 (MQ=60)
                 CGTAGGCCATACTTCACAAACGCCTGCATATAGCCCATTTTTTTGCCGCAGTCGTAACTGTCGCCGGTCATCAGCGTTGCATCAACGGATTGTT                                                                             <  SRR4302543.3004538/94‑1 (MQ=60)
                      GCCATACTTCACAAACGCCTGCATATAGCCCATTTTTTTGCCGCAGTCGTAACTGTCGCCGGTCATCAGCGTTGCATCAACGGATTGTTTTTTC                                                                        <  SRR4302543.4011939/94‑1 (MQ=60)
                      GCCATACTTCACAAACGCCTGCATATAGCCCATTTTTTTGCCGCAGTCGTAACTGTCGCCGGTCATCAGCGTTGCATCAACGGATTGTTTTTTC                                                                        <  SRR4302543.4012175/94‑1 (MQ=60)
                       CCATACTTCACAAACGCCTGCATATAGCCCATTTTTTTGCCGCAGTCGTAACTGTCGCCGGTCATCAGCGTTGCATCAACGGATTGTTTTTTCG                                                                       <  SRR4302543.1253931/94‑1 (MQ=60)
                        CATACTTCACAAACGCCTGCATATAGCCCATTTTTTTGCCGCAGTCGTAGCTGTCGCCGGTCATCAGCGTTGCATCAACGGATTGTTTTTTCGC                                                                      >  SRR4302543.3862397/1‑94 (MQ=60)
                        CATACTTCACAAACGCCTGCATATAGCCCATTTTTTTGCCGCAGTCGTAACTGTCGCCGGTCATCAGCGTTGCATCAACGGATTGTTTTTTCGC                                                                      >  SRR4302543.3730196/1‑94 (MQ=60)
                         ATACTTCACAAACGCCTGCATATAGCCCATTTTTTTGCCGCAGTCGTAACTGTCGCCGGTCATCAGCGTTGCATCAACGGATTGTTTTTTCGCC                                                                     >  SRR4302543.1094939/1‑94 (MQ=60)
                         ATACTTCACAAACGCCTGCATATAGCCCATTTTTTTGCCGCAGTCGTAACTGTCGCCGGTCATCAGCGTTGCATCAACGGATTGTTTTTTCGCC                                                                     <  SRR4302543.2295498/94‑1 (MQ=60)
                         ATACTTCACAAACGCCTGCATATAGCCCATTTTTTTGCCGCAGTCGTAACTGTCGCCGGTCATCAGCGTTGCATCAACGGATTGTTTTTTCGCC                                                                     >  SRR4302543.1448625/1‑94 (MQ=60)
                         ATACTTCACAAACGCCTGCATATAGCCCATTTTTTTGCCGCAGTCGTAACTGTCGCCGGTCATCAGCGTTGCATCAACGGATTGTTTTTTCGCC                                                                     >  SRR4302543.7958177/1‑94 (MQ=60)
                          TACTTCACAAACGCCTGCATATAGCCCATTTTTTTGCCGCAGTCGTAACTGTCGCCGGGCATCAGCGTTGCATCAACGGATTGTTTTTTCGCCA                                                                    >  SRR4302543.6704961/1‑94 (MQ=60)
                           ACTTCACAAACGCCTGCATATAGCCCATTTTTTTGCCGCAGTCGTAACTGTCGCCGGTCATCAGCGTTGCATCAACGGATTGTTTTTTCGCCAG                                                                   <  SRR4302543.6999782/94‑1 (MQ=60)
                           ACTTCACAAACGCCTGCATATAGCCCATTTTTTTGCCGCAGTCGTAACTGTCGCCGGTCATCAGCGTTGCATCAACGGATTGTTTTTTCGCCAG                                                                   <  SRR4302543.4842452/94‑1 (MQ=60)
                           ACTTCACAAACGCCTGCATATAGCCCATTTTTTTGCCGCAGTCGTAACTGTCGCCGGTCATCAGCGTTGCATCAACGGATTGTTTTTTCGCCAG                                                                   <  SRR4302543.3746534/94‑1 (MQ=60)
                             TTCACAATCGCCTGCATATAGCCTATTTTTTTGCCGCAGTCGTAACTGTCGCCGGTCATCAGCGTTGCATCAACGGATTGTTTTTTCGCCAGCT                                                                 <  SRR4302543.36614/94‑1 (MQ=60)
                              TCACAAACGCCTGCATATAGCCCATTTTTTTGCCGCAGTCGTAACTGTCGCCGGTCATCAGCGTTGCATCAACGGATTGTTTTTTCGCCAGCTC                                                                >  SRR4302543.114703/1‑94 (MQ=60)
                               CACAAACGCCTGCATATAGCCCATTTTTTTGCCGCAGTCGTAACTGTCGCCGGTCATCAGCGTTGCATCAACGGATTGTTTTTTCGCCAGCTCG                                                               <  SRR4302543.945175/94‑1 (MQ=60)
                                ACAAACGCCTGCATATAGCCCATTTTTTTGCCGCAGTCGTAACTGTCGCCGGTCATCAGCGTTGCATCAACGGATTGTTTTTTCGCCAGCTCGT                                                              <  SRR4302543.1142488/94‑1 (MQ=60)
                                ACAAACGCCTGCATATAGCCCATTTTTTTGCCGCAGTCGTAACTGTCGCCGGTCATCAGCGTTGCATCAACGGATTGTTTTTTCGCCAGCTCGG                                                              >  SRR4302543.4873137/1‑94 (MQ=60)
                                 CAAACGCCTGCATATAGCCCATTTTTTTGCCGCAGTCGTAACTGTCGCCGGTCATCAGCGTTGCATCAACGGATTGTTTTTTCGTCAGCTCGGC                                                             >  SRR4302543.3176581/1‑94 (MQ=60)
                                 CAAACGCCTGCATATAGCCCATTTTTTTGCCGCAGTCGTAACTGTCGCCGGTCATCAGCGTTGCATCAACGGATTGTTTTTTCGCCAGCTCGGC                                                             >  SRR4302543.7950726/1‑94 (MQ=60)
                                  AAACGCCTGCATATAGCCCATTTTTTTGCCGCAGTCGTAACTGTCGCCGGTCATCAGCGTTGCATCAACGGATTGTTTTTTCGCCAGCTCGGCA                                                            >  SRR4302543.5043111/1‑94 (MQ=60)
                                   AACGCCTGCATATAGCCCATTTTTTTGCAGCAGTCGTAACTGTCGCCGGTCATCAGCGTTGCATCAACGGATTGTTTTTTCGCCAGCTCGGCAA                                                           <  SRR4302543.7249943/94‑1 (MQ=60)
                                      GCCTGCATATAGCCCATTTTTTTGCCGCAGTCGTAACTGTCGCCGGTCATCAGCGTTGCATCAACGGATTGTTTTTTCGCCAGCTCGGCAATAG                                                        <  SRR4302543.5679366/94‑1 (MQ=60)
                                      GCCTGCATATAGCCCATTTTTTTGCCGCAGTCGTAACTGTCGCCGGTCATCAGCGTTGCATCAACGGATTGTTTTTTCGCCAGCTCGGCAATAG                                                        <  SRR4302543.2457796/94‑1 (MQ=60)
                                       CCTGCATATAGCCCATTTTTTTGCCGCAGTCGTAACTGTCGCCGGTCATCAGCGTTGCATCAACGGATTGTTTTTTCGCCAGCTCGGCAATAGC                                                       >  SRR4302543.5741704/1‑94 (MQ=60)
                                       CCTGCATATAGCCCATTTTTTTGCCGCAGTCGTAACTGTCGCCGGTCATCAGCGTTGCATCAACGGATTGTTTTTTCGCCAGCTCGGCAATAGC                                                       >  SRR4302543.7350432/1‑94 (MQ=60)
                                       CCTGCATATAGCCCATTTTTTTGCCGCAGTCGTAACTGTCGCCGGTCATCAGCGTTGCATCAACGGATTGTTTTTTCGCCAGCTCGGCAATAGC                                                       >  SRR4302543.1061274/1‑94 (MQ=60)
                                       CCTGCATATAGCCCATTTTTTTGCCGCAGTCGTAACTGTCGCCGGTCATCAGCGTTGCATCAACGGATTGTTTTTTCGCCAGCTCGGCAATAGC                                                       >  SRR4302543.3529927/1‑94 (MQ=60)
                                        CTGCATATAGCCCATTTTTTTGCCGCAGTCGTAACTGTCGCCGGTCATCAGCGTTGCATCAACGGATTGTTTTTTCGCCAGCTCGGCAATAGCA                                                      >  SRR4302543.1385917/1‑94 (MQ=60)
                                        CTGCATATAGCCCATTTTTTTGCCGCAGTCGTAACTGTCGCCGGTCATCAGCGTTGCATCAACGGATTGTTTTTTCGCCAGCTCGGCAATAGCA                                                      >  SRR4302543.7968169/1‑94 (MQ=60)
                                         TGCATATAGCCCATTTTTTTGCCGCAGTCGTAACTGTCGCCGGTCATCAGCGTTGCATCAACGGATTGTTTTTTCGCCAGCTCGGCAATAGCAT                                                     <  SRR4302543.7639369/94‑1 (MQ=60)
                                         TGCATATAGCCCATTTTTTTGCCGCAGTCGTAACTGTCGCCGGTCATCAGCGTTGCATCAACGGATTGTTTTTTCGCCAGCTCGGCAATAGCAT                                                     >  SRR4302543.2285441/1‑94 (MQ=60)
                                          agaaaacaaccaaTTTTTTGCCGCAGTAGTAACTGTCGCAGGTCATCAGCGTTGCATCAACGGATTGTTTTTTCGACAGCTCGGCAATAGCATC                                                    <  SRR4302543.7481625/81‑1 (MQ=60)
                                          GCATATAGCCCATTTTTTTGCCGCAGTCGTAACTGTCGCCGGTCATCAGCGTTGCATCAACGGATTGTTTTTTCGCCAGCTCGGCAATAGCATC                                                    <  SRR4302543.5136695/94‑1 (MQ=60)
                                           CATATAGCCCATTTTTTTGCCGCAGTCGTAACTGTCGCCGGTCATCAGCGTTGCATCAACGGATTGTTTTTTCGCCAGCTCGGCAATAGCATCA                                                   >  SRR4302543.5963598/1‑94 (MQ=60)
                                           CATATAGCCCATTTTTTTGCCGCAGTCGTAACTGTCGCCGGTCATCAGCGTTGCATCAACGGATTGGTTTTTCGCCAGCTCGGCAATAGCATCA                                                   >  SRR4302543.7314157/1‑94 (MQ=60)
                                           CATAGAGCCCATTTTTTTGCCGCAGTCGTAACTGTCGCCGGTCATCAGCGTTGCATCAACTGATTGTTTTTTCGCCAGCTCGGCAATAGCAACA                                                   >  SRR4302543.5963599/1‑94 (MQ=60)
                                            ATATAGCCCATTTTTTTGCCGCAGTCGTAACTGTCGCCGGTCATCAGCGTTGCATCAACGGATTGTTTTTTCGCCAGCTCGGCAATAGCATCAG                                                  >  SRR4302543.7248590/1‑94 (MQ=60)
                                            ATATAGCCCATTTTTTTGCCGCAGTCGTAACTGTCGCCGGTCATCAGCGTTGCATCAACGGATTGTTTTTTCGCCAGCTCGGCAATAGCATCAG                                                  <  SRR4302543.5644147/94‑1 (MQ=60)
                                            ATATAGCCCATTTTTTTGCCGCAGTCGTAACTGTCGCCGGTCATCAGCGTTGCATCAACGGATTGTTTTTTCGCCAGCTCGGCAATAGCATCAG                                                  >  SRR4302543.1388929/1‑94 (MQ=60)
                                             TATAGCCCATTTTTTTGCCGCAGTCGTAACTGTCGCCGGTCATCAGCGTTGCATCAACGGATTGTTTTTTCGCCAGCTCGGCAATAGCATCAGT                                                 >  SRR4302543.6957126/1‑94 (MQ=60)
                                             TATAGCCCATTTTTTTGCCGCAGTCGTAACTGTCGCCGGTCATCAGCGTTGCATCAACGGATTGTTTTTTCGCCAGCTCGGCAATAGCATCAGT                                                 <  SRR4302543.2115189/94‑1 (MQ=60)
                                              ATAGCCCATTTTTTTGCCGCAGTCGTAACTGTCGCCGGTCATCAGCGTTGCATCAACGGATTGTTTTTTCGCCAGCTCGGCAATAGCATCAGTC                                                >  SRR4302543.4027447/1‑94 (MQ=60)
                                               TAGCCCATTTTTTTGCCGCAGTCGTAACTGTCGCCGGTCATCAGCGTTGCATCAACGGATTGTTTTTTCGCCAGCTCGGCAATAGCATCAGTCA                                               <  SRR4302543.5610788/94‑1 (MQ=60)
                                                AGCCCATTTTTTTGCCGCAGTCGTAACTGTCGCCGGTCATCAGCGTTGCATCAACGGATTGTTTTTTCGCCAGCTCGGCAATAGCATCAGTCAG                                              <  SRR4302543.6517499/94‑1 (MQ=60)
                                                     ATTTTTTTGCCGCAGTCGTAACTGTCGCCGGTCATCAGCGTTGCATCAACGGATTGTTTTTTCGCCAGCTCGGCAATAGCATCAGTCAGCTGAA                                         >  SRR4302543.4157867/1‑94 (MQ=60)
                                                     ATTTTTTTGCCGCAGTCGTAACTGTCGCCGGTCATCAGCGTTGCATCAACGGATTGTTTTTTCGCCAGCTCGGCAATAGCATCAGTCAGCTGAA                                         >  SRR4302543.3080748/1‑94 (MQ=60)
                                                      TTTTTTTGCCGCAGTCGTAACTGTCGCCGGTCATCAGCGTTGCATCAACGGATTGTTTTTTCGCCAGCTCGGCAATAGCATCAGTCAGCTGAAT                                        <  SRR4302543.7135103/94‑1 (MQ=60)
                                                       TTTTTTGCCGCAGTCGTAACTGTCGCCGGTCATCAGCGTTGCATCAACGGATTGTTTTTTCGCCAGATCGGCAATAGCATCAGTCAGCTGAATA                                       <  SRR4302543.94560/94‑1 (MQ=60)
                                                        TTTTTGCCGCAGTCGTAACTGTCGCCGGTCATCAGCGTTGCATCAACGGATTGTTTTTTCGCCAGCTCGGCAATAGCATCAGTCAGCTGAATAC                                      <  SRR4302543.6481330/94‑1 (MQ=60)
                                                          TTTGCCGCAGTCGTAACTGTCGCCGGTCATCAGCGTTGCATCAACGGATTGTTTTTTCGCCAGCTCGGCAATAGCATCAGTCAGCTGAATACGT                                    >  SRR4302543.6632346/1‑94 (MQ=60)
                                                           TTGCCGCAGTCGTAACTGTCGCCGGTCATCAGCGTTGCATCAACGGATTGTTTTTTCGCCAGCTCGGCAATAGCATCAGTCAGCTGAATACGTC                                   >  SRR4302543.1729231/1‑94 (MQ=60)
                                                            TGCCGCAGTCGTAACTGTCGCCGGTCATCAGCGTTGCATCAACGGATTGTTTTTTCGCCAGCTCGGCAATAGCATCAGTCAGCTGAATACGTCC                                  <  SRR4302543.6854905/94‑1 (MQ=60)
                                                             tcaGCAGTCGTAACTGTCGCCGGTCATCAGCGTTGCATCAACGGATTGTTTTTTCGCCAGCTCGGCAATAGCATCAGTCAGCTGAATACGTCCC                                 <  SRR4302543.1850858/91‑1 (MQ=60)
                                                              CCGCAGTCGTAACTGTCGCCGGTCATCAGCGTTGCATCAACGTATTGTTTTTTCGCCAGCTCGGCAATAGCATCAGTCAGCTGAATACGTCCCC                                <  SRR4302543.7696693/94‑1 (MQ=60)
                                                                ccaatgggaactggcgtCGGTCATCAGCGTTGCATCAACGGATTGTTTTTTCGACAGCTCGGCCATAGCATCCGTCAGCTGAACACGTCCCCAC                              <  SRR4302543.7585683/77‑1 (MQ=60)
                                                                GCAGTCGTAACTGTCGCCGGTCATCAGCGTTGCATCAACGGATTGTTTTTTCGCCAGCTCGGCAATAGCATCAGTCAGCTGAATACGTCCCCAC                              >  SRR4302543.2751320/1‑94 (MQ=60)
                                                                GCAGTCGTAACTGTCGCCGGTCATCAGCGTTGCATCAACGGATTGTTTTTTCGCCAGCTCGGCAATAGCATCAGTCAGCTGAATACGTCCCCAC                              <  SRR4302543.7978868/94‑1 (MQ=60)
                                                                 CAGTCGTAACTGTCGCCGGTCATCAGCGTTGCATCAACGGATTGTTTTTTCGCCAGCTCGGCAATAGCATCAGTCAGCTGAATACGTCCCCACG                             >  SRR4302543.6345258/1‑94 (MQ=60)
                                                                  AGTCGTAACTGTCGCCGGTCATCAGCGTTGCATCAACGGATTGTTTTTTCGCCAGCTCGGCAATAGCATCAGTCAGCTGAATACGTCCCCACGC                            >  SRR4302543.7292848/1‑94 (MQ=60)
                                                                   GTCGTAACTGTCGCCGGTCATCAGCGTTGCATCAACGGATTGTTTTTTCGCCAGCTCGGCAATAGCATCAGTCAGCTGAATACGTCCCCACGCA                           >  SRR4302543.3635946/1‑94 (MQ=60)
                                                                    TCGTAACTGTCGCCGGTCATCAGCGTTGCATCAACGGATTGTTTTTTCGCCAGCTCGGCAATAGCATCAGTCAGCTGAATACGTCCCCACGCAC                          >  SRR4302543.7241554/1‑94 (MQ=60)
                                                                    GCGTAACTGTCGCCGGTCATCAGCGTTGCATCAACGGATTGTTTTTTCGCCAGCTCGGCAATAGCATCAGTCAGCTGAATACGTCCCCACGCAC                          <  SRR4302543.7602118/94‑1 (MQ=60)
                                                                      GTAACTGTCGCCGGTCATCAGCGTTGCATCAACGGATTGTTTTTTCGCCAGCTCGGCAATAGCATCAGTCAGCTGAATACGTCCCCACGCACCA                        >  SRR4302543.6700835/1‑94 (MQ=60)
                                                                      GTAACTGTCGCCGGTCATCAGCGTTGCATCAACGGATTGTTTTTTCGCCAGCTCGGCAATAGCATCAGTCAGCTGAATACGTCCCCACGCACCA                        >  SRR4302543.6294589/1‑94 (MQ=60)
                                                                      GTAACTGTCGCCGGTCATCAGCGTTGCATCAACGGATTGTTTTTTCGCCAGCTCGGCAATAGCATCAGTCAGCTGAATACGTCCCCACGCACCA                        >  SRR4302543.699808/1‑94 (MQ=60)
                                                                      GTAACTGTCGCCGGTCATCAGCGTTGCATCAACGGATTGTTTTTTCGCCAGCTCGGCAATAGCATCAGTCAGCTGAATACGTCCCAACGCACCA                        >  SRR4302543.1270361/1‑94 (MQ=60)
                                                                       TAACTGTCGCCGGTCATCAGCGTTGCATCAACGGATTGTTTTTTCGCCAGCTCGGCAATAGCATCAGTCAGCTGAATACGTCCCCACGCACCAG                       >  SRR4302543.3333221/1‑94 (MQ=60)
                                                                       TAACTGTCGCCGGTCATCAGCGTTGCATCAACGGATTGTTTTTTCGCCAGCTCGGCAATAGCATCAGTCAGCTGAATACGTCCCCACGCACCAG                       <  SRR4302543.7507788/94‑1 (MQ=60)
                                                                       TAACTGTCGCCGGTCATCAGCGTTGCATCAACGGATTGTTTTTTCGCCAGCTCGGCAATAGCATCAGTCAGCTGAATACGTCCCCACGCACCAG                       <  SRR4302543.1513580/94‑1 (MQ=60)
                                                                       TAACTGTCGCCGGTCATCAGCGTTGCATCAACGGATTGTTTTTTCGCCAGCTCGGCAATAGCATCAGTCAGCTGAATACGTCCCCACGCACCAG                       >  SRR4302543.4099215/1‑94 (MQ=60)
                                                                       GAACTGTCGCCGGTCATCAGCGTTGCATCAACGGATTGTTTTTTCGCCAGCTCAGCAATAGCATCAGTCAGCTGAATACGTCCCCACGCACCAG                       <  SRR4302543.4883944/94‑1 (MQ=60)
                                                                        AACTGTCGCCGGTCATCAGCGTTGCATCAACGGATTGTTTTTTCGCCAGCTCGGCAATAGCATCAGTCAGCTGAATACGTCCCCACGCACCAGG                      >  SRR4302543.2500620/1‑94 (MQ=60)
                                                                           TGTCGCCGGTCATCAGCGTTGCATCAACGGATTGTTTTTTCGCCAGCTCGGCAATAGCATCAGTCAGCTGAATACGTCCCCACGCACCAGGCTG                   >  SRR4302543.783201/1‑94 (MQ=60)
                                                                           TGTCGCCGGTCATCAGCGTTGCATCAACGGATTGTTTTTTCGCCAGCTCGGCAATAGCATCAGTCAGCTGAATACGTCCCCACGCACCAGGCTG                   >  SRR4302543.3114201/1‑94 (MQ=60)
                                                                             TCGCCGGTCATCAGCGTTGCATCAACGGATTGTTTTTTCGCCAGCTCGGCAATAGCATCAGTCAGCTGAATACGTCCCCACGCACCAGGCTGAG                 <  SRR4302543.5952157/94‑1 (MQ=60)
                                                                             TCGCCGGTCATCAGCGTTGCATCAACGGATTGTTTTTTCGCCAGCTCGGCAATAGCATCAGTCAGCTGAATACGTCCCCACGCACCAGGCTGAG                 <  SRR4302543.2679998/94‑1 (MQ=60)
                                                                               GCCGGTCATCAGCGTTGCATCAACGGATTGTTTTTTCGCCAGCTCGGCAATAGCATCAGTCAGCTGAATACGTCCCCACGCCCCAGGCTGAGTA               <  SRR4302543.7857726/94‑1 (MQ=60)
                                                                               GCCGGTCATCAGCGTTGCATCAACGGATTGTTTTTTCGCCAGCTCGGCAATAGCATCAGTCAGCTGAATACGTCCCCACGCACCAGGCTGAGTA               <  SRR4302543.1961590/94‑1 (MQ=60)
                                                                                  GGTCATCAGCGTTGCATCAACGGATTGTTTTTTCGCCAGCTCGGCAATAGCATCAGTCAGCTGAATACGTCCCCACGCACCAGGCTGAGTACGT            <  SRR4302543.1659991/94‑1 (MQ=60)
                                                                                  GGTCATCAGCGTTGCATCAACGGATTGTTTTTTCGCCAGCTCGGCAATAGCATCAGTCAGCTGAATACGTCCCCACGCACCAGGCTGAGTACGT            >  SRR4302543.3686739/1‑94 (MQ=60)
                                                                                  GGTCATCAGCGTTGCATCAACGGATTGTTTTTTCGCCAGCTCGGCAATAGCATCAGTCAGCTGAATACGTCCCCACGCACCAGGCTGAGTACGT            >  SRR4302543.3686738/1‑94 (MQ=60)
                                                                                   GTCATCAGCGTTGCATCAACGGATTGTTTTTTCTCCAGCTCGGCAATAGCATCAGTCAGCTGAATACGTCCCCACGCACCAGGCTGAGTACGTT           >  SRR4302543.3154276/1‑94 (MQ=60)
                                                                                   GTCATCAGCGTTGCATCAACGGATTGTTTTTTCGCCAGCTCGGCAATAGCATCAGTCAGCTGAATACGTCCCCACGCACCAGGCTGAGTACGTT           >  SRR4302543.708504/1‑94 (MQ=60)
                                                                                   GTCATCAGCGTTGCATCAACGGATTGTTTTTTCGCCAGCTCGGCAATAGCATCAGTCAGCTGAATACGTCCCCACGCACCAGGCTGAGTACGTT           <  SRR4302543.3679210/94‑1 (MQ=60)
                                                                                   GTCATCAGCGTTGCATCAACGGATTGTTTTTTCGCCAGCTCGGCAATAGCATCAGTCAGCTGAATACGTCCCCACGCACCAGGCTGAGTACGTT           <  SRR4302543.2152640/94‑1 (MQ=60)
                                                                                   GTCATCAGCGTTGCATCAACGGATTGTTTTTTCGCCAGCTCGGCAATAGCATCAGTCAGCTGAATACGTCCCCACGCACCAGGCTGAGTACGTT           >  SRR4302543.1885671/1‑94 (MQ=60)
                                                                                     CATCAGCGTTGCATCAACGGATTGTTTTTTCGCCAGCTCGGCAATAGCATCAGTCAGCTGAATACGTCCCCACGCACCAGGCTGAGTACGTTCC         >  SRR4302543.5591692/1‑94 (MQ=60)
                                                                                        CAGCGTTGCATCAACGGATTGTTTTTTCGCCAGCTCGGCAATAGCATCAGTCAGCTGAATACGTCCCCACGCACCAGGCTGAGTACGTTCCAGT      >  SRR4302543.7498456/1‑94 (MQ=60)
                                                                                         AGCGTTGCATCAACGGATTGTTTTTTCGCCAGCTCGGCAATAGCATCAGTCAGCTGAATACGTCCCCACGCACCAGGCTGAGTACGTTCCAGTT     >  SRR4302543.252201/1‑94 (MQ=60)
                                                                                         AGCGTTGCATCAACGGATTGTTTTTTCGCCAGCTCGGCAATAGCATCAGTCAGCTGAATACGTCCCCACGCACCAGGCTGAGTACGTTCCAGTT     >  SRR4302543.990366/1‑94 (MQ=60)
                                                                                           CGTTGCATCAACGGATTGTTTTTTCGCCAGCTCGGCAATAGCATCAGTCAGCTGAATACGTCCCCACGCACCAGGCTGAGTACGTTCCAGTTCC   >  SRR4302543.2129635/1‑94 (MQ=60)
                                                                                           CGTTGCATCAACGGATTGTTTTTTCGCCAGCTCGGCAATAGCATCAGTCAGCTGAATACGTCCCCACGCACCAGGCTGAGTACGTTCCAGTTCC   >  SRR4302543.1679704/1‑94 (MQ=60)
                                                                                            GTTGCATCAACGGATTGTTTTTTCGCCAGCTCGGCAATAGCATCAGTCAGCTGAATACGTCCCCACGCACCAGGCTGAGTACGTTCCAGTTCCG  <  SRR4302543.883305/94‑1 (MQ=60)
                                                                                            GTTGCATCAACGGATTGTTTTTTCGCCAGCTCGGCAATAGCATCAGTCAGCTGAATACGTCCCCACGCACCAGGCTGAGTACGTTCCAGTTCCG  >  SRR4302543.5985639/1‑94 (MQ=60)
                                                                                            GTTGCATCAACGGATTGTTTTTTCGCCAGCTCGGCAATAGCATCAGTCAGCTGAATACGTCCCCACGCACCAGGCTGAGTACGTTCCAGTTCCG  >  SRR4302543.681193/1‑94 (MQ=60)
                                                                                            |                                                                                             
CCCCTTCTTTCAGGTTGCGTAGGCCATACTTCACAAACGCCTGCATATAGCCCATTTTTTTGCCGCAGTCGTAACTGTCGCCGGTCATCAGCATTGCATCAACGGATTGTTTTTTCGCCAGCTCGGCAATAGCATCAGTCAGCTGAATACGTCCCCATGCACCAGGCTGAGTACGTTCCAGTTCCG  >  NC_000913/2111497‑2111682

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑