Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I1 R1	1696	279.3	15874187	97.8%	15524954	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	2,151,093	A→G	C20R (TGC→CGC)	b2073 ←	hypothetical protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	2,151,093	0	A	G	100.0%	732.7 / NA	234	C20R (TGC→CGC)	b2073	hypothetical protein
Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (103/131); total (103/131)

Only 100 of 240 total aligned reads displayed.

CATCACGAAAGGTAACCAATCCGGCGTTAAGTTCATTAATAGGTCTACCGTTCATAGAACCAGAAACATCCAGCAGCAAAATGCAGGGGCAACGTGGTTCCGGGTTACTGGCAAAATCGCTGGTGGCAAACGTGATTTGTTCGCTCATAAGAAATCCTTTCTTAGAGAATTATCGAGGTC  >  NC_000913/2151003‑2151182

 atcaCGAAAGGTAACCAATCCGGCGTTAAGTTCATTAATAGGTCTACCGTTCATAGAACCAGAAACATCCAGCAGCAAAATGCAGGGGCGACg                                                                                        <  2:266574/93‑1 (MQ=255)

  tcaCGAAAGGTAACCAATCCGGCGTTAAGTTCATTAATAGGTCTACCGTTCATAGAACCAGAAACATCCAGCAGCAAAATGCAGGGGCGACgg                                                                                       >  1:5268705/1‑92 (MQ=255)

  tcaCGAAAGGTAACCAATCCGGCCTTAAGTTCATTAATAGGTCTACCGTTCATAGAACCAGAAACATCCAGCAGCAAAATGCAGGGGCGACGt                                                                                       <  2:5655319/93‑1 (MQ=255)

     cGAAAGGTAACCAATCCGGCGTTAAGTTCATTAATAGGTCTACCGTTCATAGAACCAGAAACATCCAGCAGCAAAATGCAGGGGCGACGTGGt                                                                                    >  1:973561/1‑93 (MQ=255)

       aaaGGTAACCAATCCGGCGTTAAGTTCATTAATAGGTCTACCGTTCATAGAACCAGAAACATCCAGCAGCAAAATGCAGGGGCGACGTGGTTc                                                                                  >  2:2499491/1‑93 (MQ=255)

        aaGGTAACCAATCCGGCGTTAAGTTCATTAATAGGTCTACCGTTCATAGAACCAGAAACATCCAGCAGCAAAATGCAGGGGCGACGTGGTTcc                                                                                 <  2:6560026/93‑1 (MQ=255)

        aaGGTAACCAATCCGGCGTTAAGTTCATTAATAGGTCTACCGTTCATAGAACCAGAAACATCCAGCAGCAAAATGCAGGGGCGACGTGGTTcc                                                                                 <  2:5411217/93‑1 (MQ=255)

         aGGTAACCAATCCGGCGTTAAGTTCATTAATAGGTCTACCGTTCATAGAACCAGAAACATCCAGCAGCAAAATGCAGGGGCGACGTGGTTCCg                                                                                >  2:1815214/1‑93 (MQ=255)

          ggTAACCAATCCGGCGTTAAGTTCATTAATAGGTCTACCGTTCATAGAACCAGAAACATCCAGCAGCAAAATGCAGGGGCGACGTGGTTCCgg                                                                               >  2:1131789/1‑93 (MQ=255)

           gTAACCAATCCGGCGTTAAGTTCATTAATAGGTCTACCGTTCATAGAACCAGAAACATCCAGCAGCAAAATGCAGGGGCGACGTGGTTCCggg                                                                              >  1:1651843/1‑93 (MQ=255)

            tAACCAATCCGGCGTTAAGTTCATTAATAGGTCTACCGTTCATAGAACCAGAAACATCCAGCAGCAAAATGCAGGGGCGACGTGGTTCCGGGt                                                                             <  2:1508107/93‑1 (MQ=255)

             aaCCAATCCGGCGTTAAGTTCATTAATAGGTCTACCGTTCATAGAACCAGAAACATCCAGCAGCAAAATGCAGGGGCGACGTGGTTCCGGGtt                                                                            >  1:2192437/1‑93 (MQ=255)

             aaCCAATCCGGCGTTAAGTTCATTAATAGGTCTACCGTTCATAGAACCAGAAACATCCAGCAGCAAAATGCAGGGGCGACGTGGTTCCGGGtt                                                                            <  1:4334667/93‑1 (MQ=255)

              aCCAATCCGGCGTTAAGTTCATTAATAGGTCTACCGTTCATAGAACCAGAAACATCCAGCAGCAAAATGCAGGGGCGACGTGGTTCCGGGTTa                                                                           >  2:1317068/1‑93 (MQ=255)

                cAATCCGGCGTTAAGTTCATTAATAGGTCTACCGTTCATAGAACCAGAAACATCCAGTAGCAAAATGCAGGGGCGACGTGGTTCCGGGTTACt                                                                         <  1:3079219/93‑1 (MQ=255)

                cAATCCGGCGTTAAGTTCATTAATAGGTCTACCGTTCATAGAACCAGAAACATCCAGCAGCAAAATGCAGGGGCGACGTGGTTCCGGGTTACt                                                                         <  2:7825721/93‑1 (MQ=255)

                cAATCCGGCGTTAAGTTCATTAATAGGTCTACCGTTCATAGAACCAGAAACATCCAGCAGCAAAATGCAGGGGCGACGTGGTTCCGGGTTACt                                                                         >  1:2860817/1‑93 (MQ=255)

                 aaTCCGGCGTTAAGTTCATTAATAGGTCTACCGTTCATAGAACCAGAAACATCCAGCAGCAAAATGCAGGGGCGACGTGGTTCCGGGTTACTg                                                                        <  1:5865292/93‑1 (MQ=255)

                 aaTCCGGCGTTAAGTTCATTAATAGGTCTACCGTTCATAGAACCAGAAACATCCAGCAGCAAAATGCAGGGGCGACGTGGTTCCGGGCTACTg                                                                        >  2:4751137/1‑93 (MQ=255)

                  aTCCGGCGTTAAGTTCATTAATAGGTCTACCGTTCATAGAACCAGAAACATCCAGCAGCAAAATGCAGGGGCGACGTGGTTCCGGGTTACTgg                                                                       >  1:6798361/1‑93 (MQ=255)

                  aTCCGGCGTTAAGTTCATTAATAGGTCTACCGTTCATAGAACCAGAAACATCCAGCAGCAAAATGCAGGGGCGACGTGGTTCCGGGTTACTgg                                                                       >  2:7192017/1‑93 (MQ=255)

                     cGGCGTTAAGTTCATTAATAGGTCTACCGTTCATAGAACCAGAAACATCCAGCAGCAAAATGCAGGGGCGACGTGGTTCCGGGTTACTGGCaa                                                                    >  2:3637507/1‑93 (MQ=255)

                        cGTTAAGTTCATTAATAGGTCTACCGTTCATAGAACCAGAAACATCCAGCAGCAAAATGCAGGGGCGACGTGGTTCCGGGTTACTGGCAAAAt                                                                 <  1:7496187/93‑1 (MQ=255)

                         gTTAAGTTCATTAATAGGTCTACCGTTCATAGAACCAGAAACATCCAGCAGCAAAATGCAGGGGCGACGTGGTTCCGGGTTACTGGCAAAATc                                                                <  2:7681474/93‑1 (MQ=255)

                         gTTAAGTTCATTAATAGGCCTACCGTTCATAGAACCAGAAACATCCAGCAGCAAAATGCAGGGGCGACGTGGTTCCGGGTTACTGGCAAAATc                                                                >  2:5544964/1‑93 (MQ=255)

                         gTTAAAGTCATTAAAAGGTTCACCGTTCATAGAACCAGAAACATCCAGCAGCAAAATGCAGGGGCGACGTGGTTCCGGGTTACTGGCAAAATc                                                                <  1:2010891/93‑1 (MQ=255)

                           tAAGTTCATTAATAGGTCTACCGTTCATAGAACCAGAAACATCCAGCAGCAAAATGCAGGGGCGACGTGGTTCCGGGTTACTGGCAAAATCGc                                                              <  2:4498045/93‑1 (MQ=255)

                           tAAGTTCATTAATAGGTCTACCGTTCATAGAACCAGAAACATCCAGCAGCAAAATGCAGGGGCGACGTGGTTCCGGGTTACTGGCAAAATCGc                                                              <  1:4893183/93‑1 (MQ=255)

                            aaGTTCATTAATAGGTCTACCGTTCATAGAACCAGAAACATCCAGCAGCAAAATGCAGGGGCGACGTGGTTCCGGGTTACTGGCAAAATCGCt                                                             <  2:5565932/93‑1 (MQ=255)

                             aGTTCATTAATAGGTCTACCGTTCATAGAACCAGAAACATCCAGCAGCAAAATGCAGGGGCGACGTGGTTCCGGGTTACTGGCAAAATCGCtg                                                            <  2:7218767/93‑1 (MQ=255)

                              gTTCATTAATAGGTCTACCGTTCATAGAACCAGAAACATCCAGCAGCAAAATGCAGGGGCGACGTTGTTCCGGGTTACTGGCAAAATCGCtgg                                                           <  2:2017493/93‑1 (MQ=255)

                              gTTCATTAATAGGTCTACCGTTCATAGAACCAGAAACATCCAGCAGCAAAATGCAGGGGCGACGTGGTTCCGGGTTACTGGCAAAATCGCtgg                                                           <  1:5987591/93‑1 (MQ=255)

                               ttCATTAATAGGTCTACCGTTCATAGAACCAGAAACATCCAGCAGCAAAATGCAGGGGCGACGTGGTTCCGGGTTACTGGCAAAATCGCtggt                                                          <  1:4113106/93‑1 (MQ=255)

                                 cATTAATAGGTCTACCGTTCATAGAACCAGAAACATCCAGCAGCAAAATGCAGGGGCGACGTGGTTCCGGGTTACTGGCAAAATCGCtggtgg                                                        >  2:1946347/1‑93 (MQ=255)

                                 cATTAATAGGTCTACCGTTCATAGAACCAGAAACATCCAGCAGCAAAATGCAGGGGCGACGTGGTTCCGGGTTACTGGCAAAATCGCtggtgg                                                        >  2:7418555/1‑93 (MQ=255)

                                 cATTAATAGGTCTACCGTTCATAGAACCAGAAACATCCAGCAGCAAAATGCAGGGGCGACGTGGTTCCGGGTTACTGGCAAAATCGCtggtgg                                                        <  2:1384435/93‑1 (MQ=255)

                                  aTTAATATGTCTACCGTTCATAGAACCAGAAACATCCAGCAGCAAAATGCAGGGGCGACGTGGTTCCGGGTTACTGGCAAAATCGCTGGTGGc                                                       <  1:3609423/93‑1 (MQ=255)

                                     aaTAGGTCTTCCGTTCATAGAACCAGAAACATCCAGCAGCAAAATGCAGGGGCGACGTGGTTCCGGGTGACTGGCAAAATCGCTGGTGGCaaa                                                    <  1:6228168/93‑1 (MQ=255)

                                     aaTAGGTCTACCGTTCATAGAACCAGAAACATCCAGCAGCAAAATGCAGGGGCGACGTGGTTCCGGGTTACTGGCAAAATCGCTGGTGGCaaa                                                    >  1:3480948/1‑93 (MQ=255)

                                       tAGGTCTACCGTTCATAGAACCAGAAACATCCAGCAGCAAAATGCAGGGGCGACGTGGTTCCGGGTTACTGGCAAAATCGCTGGTGGCAAACg                                                  >  2:3298958/1‑93 (MQ=255)

                                         ggTCTACCGTTCATAGAACCAGAAACATCCAGCAGCAAAATGCAGGGGCGACGTGGTTCCGGGTTACTGGCAAAATCGCTGGTGGCAAACGTg                                                >  2:296537/1‑93 (MQ=255)

                                         ggTCTACCGTTCATAGAACCAGAAACATCCAGCAGCAAAATGCAGGGGCGACGTGGTTCCGGGTTACTGGCAAAATCGCTGGTGGCAAACGTg                                                <  2:4153524/93‑1 (MQ=255)

                                         ggTCTACCGTTCATAGAACCAGAAACATCCAGCAGCAAAATGCAGGGGCGACGTGGTTCCGGGTTACTGGCAAAATCGCTGGTGGCAAACGTg                                                >  1:779150/1‑93 (MQ=255)

                                         ggTCTACCGTTCATAGAACCAGAAACATCCAGCAGCAAAATGCAGGGGCGACGTGGTTCCGGGTTACTGGCAAAATCGCTGGTGGCAAACGTg                                                >  1:1003562/1‑93 (MQ=255)

                                          gTCTACCGTTCATAGAACCAGAAACATCCAGCAGCAAAATGCAGGGGCGACGTGGTTCCGGGTTACTGGCAAAATCGCTGGTGGCAAACGTGa                                               >  2:6519115/1‑93 (MQ=255)

                                           tCTACCGTTCATAGAACCAGAAACATCCAGCAGCAAAATGCAGGGGCGACGTGGTTCCGGGTTACTGGCAAAATCGCTGGTGGCAAACGTGAt                                              >  2:5233691/1‑93 (MQ=255)

                                           tCTACCGTTCATAGAACCAGAAACATCCAGCAGCAAAATGCAGGGGCGACGTGGTTCCGGGTTACTGGCAAAATCGCTGGTGGCAAACGTGAt                                              >  1:335276/1‑93 (MQ=255)

                                            cTACCGTTCATAGAACCAGAAACATCCAGCAGCAAAATGCAGGGGCGACGTGGTTCCGGGTTACTGGCAAAATCGCTGGTGGCAAACGTGAtt                                             <  1:277049/93‑1 (MQ=255)

                                             tACCGTTCATAGAACCAGAAACATCCAGCAGCAAAATGCAGGGGCGACGTGGTTCCGGGTTACTGGCAAAATCGCTGGTGGCAAACGTGAttt                                            <  1:6354998/93‑1 (MQ=255)

                                             tACCGTTCATAGAACCAGAAACATCCAGCAGCAAAATGCAGGGGCGACGTGGTTCCGGGTTACTGGCAAAATCGCTGGTGGCAAACGTGAttt                                            <  2:3828128/93‑1 (MQ=255)

                                               ccGTTCATAGAACCAGAAACATCCAGCAGCAAAATGCAGGGGCGACGTGGTTCCGGGTTACTGGCAAAATCGCTGGTGGCAAACGTGATTTGt                                          >  1:4262778/1‑93 (MQ=255)

                                               ccGTTCATAGAACCAGAAACATCCAGCAGCAAAATGCAGGGGCGACGTGGTTCCGGGTTACTGGCAAAATCGCTGGTGGCAAACGTGATTTGt                                          <  1:4743322/93‑1 (MQ=255)

                                                cGTTCATAGAACCAGAAACATCCAGCAGCAAAATGCAGGGGCGACGTGGTTCCGGGTTACTGGCAAAATCGCTGGTGGCAAACGTGATTTGtt                                         <  2:7602675/93‑1 (MQ=255)

                                                  ttCATAGAACCAGAAACATCCAGCAGCAAAATGCAGGGGCGACGTGGTTCCGGGTTACTGGCAAAATCGCTGGTGGCAAACGTGATTTGTTCg                                       >  1:1556082/1‑93 (MQ=255)

                                                  ttCATAGAACCAGAAACATCCAGCAGCAAAATGCAGGGGCGACGTGGTTCCGGGTTACTGGCAAAATCGCTGGTGGCAAACGTGATTTGTTCg                                       >  1:3889704/1‑93 (MQ=255)

                                                  ttCATAGAACCAGAAACATCCAGCAGCAAAATGCAGGGGCGACGTGGTTCCGGGTTACTGGCAAAATCGCTGGTGGCAAACGTGATTTGTTCg                                       <  2:6640454/93‑1 (MQ=255)

                                                   tCATAGAACCAGAAACATCCAGCAGCAAAATGCAGGGGCGACGTGGTTCCGGGTTACTGGCAAAATCGCTGGTGGCAAACGTGATTTGTTCGc                                      >  2:6862160/1‑93 (MQ=255)

                                                     aTAGAACCAGAAACATCCAGCAGCAAAATGCAGGGGCGACGTGGTTCCGGGTTACTGGCAAAATCGCTGGTGGCAAACGTGATTTGTTCGCTc                                    <  2:3034697/93‑1 (MQ=255)

                                                      tAGAACCAGAAACATCCAGCAGCAAAATGCAGGGGCGACGTGGTTCCGGGTTACTGGCAAAATCGCTGGTGGCAAACGTGATTTGTTCGCTCa                                   >  1:4348537/1‑93 (MQ=255)

                                                      tAGAACCAGAAACATCCAGCAGCAAAATGCAGGGGCGACGTGGTTCCGGGTTACTGGCAAAATCGCTGGTGGCAAACGTGATTTGTTCGCTCa                                   >  1:3983136/1‑93 (MQ=255)

                                                      tAGAACCAGAAACATCCAGCAGCAAAATGCAGGGGCGACGTGGTTCCGGGTTACTGGCAAAATCGCTGGTGGCAAACGTGATTTGTTCGCTCa                                   >  1:699693/1‑93 (MQ=255)

                                                        gAACCAGAAACATCCAGCAGCAAAATGCAGGGGCGACGTGGTTCCGGGTTACTGGCAAAATCGCTGGTGGCAAACGTGATTTGTTCGCTCATa                                 <  1:4654456/93‑1 (MQ=255)

                                                         aaCCAGAAACATCCAGCAGCAAAATGCAGGGGCGACGTGGTTCCGGGTTACTGGCAAAATCGCTGGTGGCAAACGTGATTTGTTCGCTCATaa                                <  1:1468160/93‑1 (MQ=255)

                                                         aaCCAGAAACATCCAGATGCAAAATGCAGGGGCGACGTGGTTACGGGTTACTGGCAAAATCGCTGGTGGCAAACGTGATTTATTCACACATac                                <  2:7037744/93‑2 (MQ=255)

                                                          aCCAGAAACATCCAGCAGCAAAATGCAGGGGCGACGTGGTTCCGGGTTACTGGCAAAATCGCTGGTGGCAAACGTGATTTGTTCGCTCATAAg                               <  1:5087736/93‑1 (MQ=255)

                                                            cAGAAACATCCAGCAGCAAAATGCAGGGGCGACGTGGTTCCGGGTTACTGGCAAAATCGCTGGTGGCAAACGTGATTTGTTCGCTCATAAGaa                             <  1:2580404/93‑1 (MQ=255)

                                                             aGAAACATCCAGCAGCAAAATGCAGGGGCGACGTGGTTCCGGGTTACTGGCAAAATCGCTGGTGGCAAACGTGATTTGTTCGCTCATAAGaaa                            <  1:6461391/93‑1 (MQ=255)

                                                              gAAACATCCAGCAGCAAAATGCAGGGGCGACGTGGTTCCGGGTTACTGGCAAAATCGCTGGTGGCAAACGTGATTTGTTCGCTCATAAGAAAt                           >  1:1796837/1‑93 (MQ=255)

                                                              gAAACATCCAGCAGCAAAATGCAGGGGCGACGTGGTTCCGGGTTACTGGCAAAATCGCTGGTGGCAAACGTGATTTGTTCGCTCATAAGAAAt                           >  1:2330956/1‑93 (MQ=255)

                                                              gAAACATCCAGCAGCAAAATGCAGGGGCGACGTGGTTCCGGGTTACTGGCAAAATCGCTGGTGGCAAACGTGATTTGTTCGCTCATAAGAAAt                           >  2:4820014/1‑93 (MQ=255)

                                                              gAAACATCCAGCAGCAAAATGCAGGGGCGACGTGGTTCCGGGTTACTGGCAAAATCGCTGGTGGCAAACGTGATTTGTTCGCTCATAAGAAAt                           <  1:2954182/93‑1 (MQ=255)

                                                               aaaCATCCAGCAGCAAAATGCAGGGGCGACGTGGTTCCGGGTTACTGGCAAAATCGCTGGTGGCAAACGTGATTTGTTCGCTCATAAGAAATc                          <  1:3917771/93‑1 (MQ=255)

                                                                aaCATCCAGCAGCAAAATGCAGGGGCGACGTGGTTCCGGGTTACTGGCAAAATCGCTGGTGGCAAACGTGATTTGTTCGCTCATAAGAAATcc                         <  1:6194844/93‑1 (MQ=255)

                                                                 aCATCCAGCAGCAAAATGCAGGGGCGACGTGGTTCCGGGTTACTGGCAAAATCGCTGGTGGCAAACGTGATTTGTTCGCTCATAAGAAATCCt                        <  2:6199824/93‑1 (MQ=255)

                                                                  cATCCAGCAGCAAAATGCAGGGGCGACGTGGTTCCGGGTTACTGGCAAAATCGCTGGTGGCAAACGTGATTTGTTCGCTCATAAGAAATCCtt                       <  2:234997/93‑1 (MQ=255)

                                                                  cATCCAGCAGCAAAATGCAGGGGCGACGTGGTTCCGGGTTACTGGCAAAATCGCTGGTGGCAAACGTGATTTGTTCGCTCATAAGAAATCCtt                       >  2:7373764/1‑93 (MQ=255)

                                                                   aTCCAGCAGCAAAATGCAGGGGCGACGTGGTTCCGGGTTACTGGCAAAATCGCTGGTGGCAAACGTGATTTGTTCGCTCATAAGAAATCCttt                      <  1:2106818/93‑1 (MQ=255)

                                                                    tCCAGCAGCAAAATGCAGGGGCGACGTGGTTCCGGGTTACTGGCAAAATCGCTGGTGGCAAACGTGATTTGTTCGCTCATAAGAAATCCTTTc                     <  1:7193418/93‑1 (MQ=255)

                                                                    tCCAGCAGCAAAATGCAGGGGCGACGTGGTTCCGGGTTACTGGCAAAATCGCTGGTGGCAAACGTGATTTGTTCGCTCATAAGAAATCCTTTc                     >  1:3226679/1‑93 (MQ=255)

                                                                    tCCAGCAGCAAAATGCAGGGGCGACGTGGTTCCGGGTTACTGGCAAAATCGCTGGTGGCAAACGTGATTTGTTCGCTCATAAGAAATCCTTTc                     <  1:4972611/93‑1 (MQ=255)

                                                                     ccAGCAGCAAAATGCAGGGGCGACGTGGTTCCGGGTTACTGGCAAAATCGCTGGTGGCAAACGTGATTTGTTCGCTCATAAGAAATCCTTTCt                    <  2:429616/93‑1 (MQ=255)

                                                                       agcagcAAAATGCAGGGGCGACGTGGTTCCGGGTTACTGGCAAAATCGCTGGTGGCAAACGTGATTTGTTCGCTCATAAGAAATCCTTTCTTa                  <  1:3102711/93‑1 (MQ=255)

                                                                        gcagcaAAATGCAGGGGCGACGTGGTTCCGGGTTACTGGCAAAATCGCTGGTGGCAAACGTGATTTGTTCGCTCATAAGAAATCCTTTCTTag                 <  1:5484588/93‑1 (MQ=255)

                                                                           gcaAAATGCAGGGGCGACGTGGTTCCGGGTTACTGGCAAAATCGCTGGTGGCAAACGTGATTTGTTCGCTCATAAGAAATCCTTTCTTAgaga              >  1:7912306/1‑93 (MQ=255)

                                                                           gcaAAATGCAGGGGCGACGTGGTTCCGGGTTACTGGCAAAATCGCTGGTGGCAAACGTGATTTGTTCGCTCATAAGAAATCCTTTCTTAgaga              <  2:2737718/93‑1 (MQ=255)

                                                                            caAAATGCAGGGGCGACGTGGTTCCGGGTTACTGGCAAAATCGCTGGTGGCAAACGTGATTTGTTCGCTCATAAGAAATCCTTTCTTAGAGaa             <  1:3708629/93‑1 (MQ=255)

                                                                              aaaTGCAGGGGCGACGTGGTTCCGGGTTACTGGCAAAATCGCTGGTGGCAAACGTGATTTGTTCGCTCATAAGAAATCCTTTCTTAGAGAAtt           >  2:6453919/1‑93 (MQ=255)

                                                                               aaTGCAGGGGCGACGTGGTTCCGGGTTACTGGCAAAATCGCTGGTGGCAAACGTGATTTGTTCGCTCATAAGAAATCCTTTCTTAGAGAATTa          <  2:578822/93‑1 (MQ=255)

                                                                               aaTGCAGGGGCGACGTGGTTCCGGGTTACTGGCAAAATCGCTGGTGGCAAACGTGATTTGTTCGCTCATAAGAAATCCTTTCTTAGAGAATTa          >  2:5960511/1‑93 (MQ=255)

                                                                               aaTGCAGGGGCGACGTGGTTCCGGGTTACTGGCAAAATCGCTGGTGGCAAACGTGATTTGTTCGCTCATAAGAAATCCTTTCTTAGAGAATTa          <  2:361830/93‑1 (MQ=255)

                                                                               aaTGCAGGGGCGACGTGGTTCCGGGTTACTGGCAAAATCGCTGGTGGCAAACGTGATTTGTTCGCTCATAAGAAATCCTTTCTTAGAGAATTa          <  2:3595265/93‑1 (MQ=255)

                                                                                 tGCAGGGGCGACGTGGTTCCGGGTTACTGGCAAAATCGCTGGTGGCAAACGTGATTTGTTCGCTCATAAGAAATCCTTTCTTAGAGAATTATc        >  2:4626702/1‑93 (MQ=255)

                                                                                 tGCAGGGGCGACGTGGTTCCGGGTTACTGGCAAAATCGCTGGTGGCAAACGTGATTTGTTCGCTCATAAGAAATCCTTTCTTAGAGAATTATc        <  2:3943841/93‑1 (MQ=255)

                                                                                 tGCAGGGGCGACGTGGTTCCGGGTTACTGGCAAAATCGCTGGTGGCAAACGTGATTTGTTCGCTCATAAGAAATCCTTTCTTAGAGAATTATc        <  2:4099931/93‑1 (MQ=255)

                                                                                  gCAGGGGCGACGTGGTTCCGGGTTACTGGCAAAATCGCTGGTGGCAAACGTTATTTGTTCGCTCATAAGAAATCCTTTCTTAGAGAATTATCg       <  1:5256905/93‑1 (MQ=255)

                                                                                  gCAGGGGCGACGTGGTTCCGGGTTACTGGCAAAATCGCTGGTGGCAAACGTGATTTGTTCGCTCATAAGAAATCCTTTCTTAGAGAATTATCg       >  2:3460363/1‑93 (MQ=255)

                                                                                  gCAGGGGCGACGTGGTTCCGGGTTACTGGCAAAATCGCTGGTGGCAAACGTGATTTGTTCGCTCATAAGAAATCCTTTCTTAGAGAATTATCg       <  2:6435574/93‑1 (MQ=255)

                                                                                    aGGGGCGACGTGGTTCCGGGTTACTGGCAAAATCGCTGGTGGCAAACGTGATTTGTTCGCTCATAAGAAATCCTTTCTTAGAGAATTATCGAg     <  1:3302648/93‑1 (MQ=255)

                                                                                     ggggCGACGTGGTTCCGGGTTACTGGCAAAATCGCTGGTGGCAAACGTGATTTGTTCGCTCATAAGAAATCCTTTCTTAGAGAATTATCGAgg    >  2:3063446/1‑93 (MQ=255)

                                                                                     ggggCGACGTGGTTCCGGGTTACTGGCAAAATCGCTGGTGGCAAACGTGATTTGTTCGCTCATAAGAAATCCTTTCTTAGAGAATTATCGAgg    >  2:4921904/1‑93 (MQ=255)

CATCACGAAAGGTAACCAATCCGGCGTTAAGTTCATTAATAGGTCTACCGTTCATAGAACCAGAAACATCCAGCAGCAAAATGCAGGGGCAACGTGGTTCCGGGTTACTGGCAAAATCGCTGGTGGCAAACGTGATTTGTTCGCTCATAAGAAATCCTTTCTTAGAGAATTATCGAGGTC  >  NC_000913/2151003‑2151182

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 21 ≤` `ATCG/ATCG` `< 30 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

GTTCATCACGAAAGGTAACCAATCCGGCGTTAAGTTCATTAATAGGTCTACCGTTCATAGAACCAGAAACATCCAGCAGCAAAATGCAGGGGCAACGTGGTTCCGGGTTACTGGCAAAATCGCTGGTGGCAAACGTGATTTGTTCGCTCATAAGAAATCCTTTCTTAGAGAATTATCGAGGTCCGGT  >  NC_000913/2151000‑2151186

GTTCATCACGAAAGGTAACCAATCCGGCGTTAAGTTCATTAATAGGTCTACCGTTCATAGAACCAGAAACATCCAGCAGCAAAATGCAGGGGCG                                                                                               >  SRR4302543.965175/1‑94 (MQ=60)

GTTCATCACGAAAGGTAACCAATCCGGCGTTAAGTTCATTAATAGGTCTACCGTTCATAGAACCAGAAACATCCAGCAGCAAAATGCAGGGGCG                                                                                               <  SRR4302543.7422009/94‑1 (MQ=60)

GTTCATCACGAAAGGTAACCAATCCGGCGTTAAGTTCATTAATAGGTCTACCGTTCATAGAACCAGAAACATCCAGCAGCAAAATGCAGGGGCG                                                                                               >  SRR4302543.6261013/1‑94 (MQ=60)

GTTCATCACGAAAGGTAACCAATCCGGCGTTAAGTTCATTAATAGGTCTACCGTTCATAGAACCAGAAACATCCAGCAGCAAAATGCAGGGGCG                                                                                               <  SRR4302543.367193/94‑1 (MQ=60)

 TTCATCACGAAAGGTAACAAATCCGGCGTTAAGTTCATTAATAGGTCTACCGTTCATAGAACCAGAAACATCCAGCAGCAAAATGCAGGGGCGA                                                                                              >  SRR4302543.1115800/1‑94 (MQ=60)

  TCATCACGAAAGGTAACCAATCCGGCGTTAAGTTCATTAATAGGTCTACCGTTCATAGAACCAGAAACATCCAGCAGCAAAATGCAGGGGCGAC                                                                                             <  SRR4302543.407230/94‑1 (MQ=60)

  TCATCACGAAAGGTAACCAATCCGGCGTTAAGTTCATTAATAGGTCTACCGTTCATAGAACCAGAAACATCCAGCAGCAAAATGCAGGGGCGAC                                                                                             >  SRR4302543.3006911/1‑94 (MQ=60)

     TCACGAAAGGTAACCAATCCGGCGTTAAGTTCATTAATAGGTCTACCGTTCATAGAACCAGAAACATCCAGCAGCAAAATGCAGGGGCGACGTG                                                                                          <  SRR4302543.285888/94‑1 (MQ=60)

       ACGAAAGGTAACCAATCCGGCGTTAAGTTCATTAATAGGTCTACCGTTCATAGAACCAGAAACATCCAGCAGCAAAATGCAGGGGCGACGTGGT                                                                                        >  SRR4302543.982137/1‑94 (MQ=60)

        CGAAAGGTAACCAATCCGGCGTTAAGTTCATTAATAGGTCTACCGTTCATAGAACCAGAAACATCCAGCAGCAAAATGCAGGGGCGACGTGGTT                                                                                       <  SRR4302543.1681049/94‑1 (MQ=60)

        CGAAAGGTAACCAATCCGGCGTTAAGTTCATTAATAGGTCTACCGTTCATAGAACCAGAAACATCCAGCAGCAAAATGCAGGGGCGACGTGGTT                                                                                       <  SRR4302543.5235643/94‑1 (MQ=60)

        CGAAAGGTAACCAATCCGGCCTTAAGTTCATTAATATGTCTACCGTCCATAGAACCGGAAACATCCAGCAGCAAAATGCAGGGGCGACGTGGTT                                                                                       <  SRR4302543.6447083/94‑1 (MQ=60)

         GAAAGGTAACCAATCCGGCGTTAAGTTCATTAATAGGTCTACCGTTCATAGAACCAGAAACATCCAGCAGCAAAATGCAGGGGCGACGTGGTTC                                                                                      >  SRR4302543.8004676/1‑94 (MQ=60)

           AAGGTAACCAATCCGGCGTTAAGTTCATTAATAGGTCTACCGTTCATAGAACCAGAAACATCCAGCAGCAAAATGCAGGGGCGACGTGGTTCCG                                                                                    >  SRR4302543.725421/1‑94 (MQ=60)

             GGTAACCAATCCGGCGTTAAGTTCATTAATAGGTCTACCGTTCATAGAACCAGAAACATCCAGCAGCAAAATGCAGGGGCGACGTGGTTCCGGG                                                                                  >  SRR4302543.1666619/1‑94 (MQ=60)

               TAACCAATCCGGCGTTAAGTTCATTAATAGGTCTACCGTTCATAGAACCAGAAACATCCAGCAGCAAAATGCAGGGGCGACGTGGTTCCGGGTT                                                                                >  SRR4302543.7645785/1‑94 (MQ=60)

               TAACCAATCCGGCGTTAAGTTCATTAATAGGTCTACCGTTCATAGAACCAGAAACATCCAGCAGCAAAATGCAGGGGCGACGTGGTTCCGGGTT                                                                                >  SRR4302543.2212128/1‑94 (MQ=60)

                AACCAATCCGGCGTTAAGTTCATTAATAGGTCTACCGTTCATAGAACCAGAAACATCCAGCAGCAAAATGCAGGGGCGACGTGGTTCCGGGTTA                                                                               <  SRR4302543.4373987/94‑1 (MQ=60)

                 ACCAATCCGGCGTTAAGTTCATTAATAGGTCTACCGTTCATAGAACCAGAAACATCCAGCAGCAAAATGCAGGGGCGACGTGGTTCCGGGTTAC                                                                              <  SRR4302543.4145558/94‑1 (MQ=60)

                  CCAATCCGGCGTTAAGTTCATTAATAGGTCTACCGTTCATAGAACCAGAAACATCCAGCAGCAAAATGCAGGGGCGACGTGGTTCCGGGTTACT                                                                             >  SRR4302543.1591508/1‑94 (MQ=60)

                  CCAATCCGGCGTTAAGTTCATTAATAGGTCTACCGTTCATAGAACCAGAAACATCCAGCAGCAAAATGCAGGGGCGACGTGGTTCCGGGTTACT                                                                             <  SRR4302543.4615590/94‑1 (MQ=60)

                  CCAATCCGGCGTTAAGTTCATTAATAGGTCTACCGTTCATAGAACCAGAAACATCCAGCAGCAAAATGCAGGGGCGACGTGGTTCCGGGTTACT                                                                             >  SRR4302543.2886906/1‑94 (MQ=60)

                  CCAATCCGGCGTTAAGTTCATTAATAGGTCTACCGTTCATAGAACCAGAAACATCCAGCAGCAAAATGCAGGGGCGACGTGGTTCCGGGTTACT                                                                             >  SRR4302543.2459802/1‑94 (MQ=60)

                   CAATCCGGCGTTAAGTTCATTAATAGGTCTACCGTTCATAGAACCAGAAACATCCAGTAGCAAAATGCAGGGGCGACGTGGTTCCGGGTTACTG                                                                            <  SRR4302543.3106911/94‑1 (MQ=60)

                    AATCCGGCGTTAAGTTCATTAATAGGTCTACCGTTCATAGAACCAGAAACATCCAGCAGCAAAATGCAGGGGCGACGTGGTTCCGGGTTACTGG                                                                           >  SRR4302543.6862562/1‑94 (MQ=60)

                    AATCCGGCGTTAAGTTCATTAATAGGTCTACCGTTCATAGAACCAGAAACATCCAGCAGCAAAATGCAGGGGCGACGTGGTTCCGGGTTACTGG                                                                           <  SRR4302543.5918686/94‑1 (MQ=60)

                      TCCGGCGTTAAGTTCATTAATAGGTCTACCGTTCATAGAACCAGAAACATCCAGCAGCAAAATGCAGGGGCGACGTGGTTCCGGGTTACTGGCA                                                                         >  SRR4302543.3158092/1‑94 (MQ=60)

                           CGTTAAGTTCATTAATAGGTCTACCGTTCATAGAACCAGAAACATCCAGCAGCAAAATGCAGGGGCGACGTGGTTCCGGGTTACTGGCAAAATC                                                                    >  SRR4302543.2899197/1‑94 (MQ=60)

                           CGTTAAGTTCATTAATAGGTCTACCGTTCATAGAACCAGAAACATCCAGCAGCAAAATGCAGGGGCGACGTGGTTCCGGGTTACTGGCAAAATC                                                                    <  SRR4302543.5476093/94‑1 (MQ=60)

                           CGTTAAGTTCATTAATAGGTCTACCGTTCATAGAACCAGAAACATCCAGCAGCAAAATGCAGGGGCGACGTGGTTCCGGGTTACTGGCAAAATC                                                                    <  SRR4302543.7567887/94‑1 (MQ=60)

                           CGTTAAGTTCATTAATAGGTCTACCGTTCATAGAACCAGAAACATCCAGCAGCAAAATGCAGGGGCGACGTGGTTCCGGGTTACTGGCAAAATC                                                                    <  SRR4302543.4796043/94‑1 (MQ=60)

                            GTTAAAGTCATTAAAAGGTTCACCGTTCATAGAACCAGAAACATCCAGCAGCAAAATGCAGGGGCGACGTGGTTCCGGGTTACTGGCAAAATCG                                                                   <  SRR4302543.2028958/94‑1 (MQ=60)

                            GTGAAGTTCATTAATAGGTCTACCGTTCATAGAACCAGAAACATCCAGCAGCAAAATGCAGGGGCGACGTGGTTCCGGGTTACTGGCAAAATCG                                                                   <  SRR4302543.6210753/94‑1 (MQ=60)

                              TAAGTTCATTAATAGGTCTACCGTTCATAGAACCAGAAACATCCAGCAGCAAAATGCAGGGGCGACGTGGTTCCGGGTTACTGGCAAAATCGCT                                                                 <  SRR4302543.3904625/94‑1 (MQ=60)

                              TAAGTTCATTAATAGGTCTACCGTTCATAGAACCAGAAACATCCAGCAGCAAAATGCAGGGGCGACGTGGTTCCGGGTTACTGGCAAAATCGCT                                                                 <  SRR4302543.4937789/94‑1 (MQ=60)

                                AGTTCATTAATAGGTCTACCGTTCATAGAACCAGAAACATCCAGCAGCAAAATGCAGGGGCGACGTGGTTCCGGGTTACTGGCAAAATCGCTGG                                                               <  SRR4302543.7320724/94‑1 (MQ=60)

                                 GTTCATTAATAGGTCTACCGTTCATAGAACCAGAAACATCCAGCAGCAAAATGCAGGGGCGACGTGGTTCCGGGTTACTGGCAAAATCGCTGGT                                                              <  SRR4302543.6042463/94‑1 (MQ=60)

                                 GTTCATTAATAGGTCTACCGTTCATAGAACCAGAAACATCCAGCAGCAAAATGCAGGGGCGACGTGGTTCCGGGTTACTGGCAAAATCGCTGGT                                                              <  SRR4302543.1966485/94‑1 (MQ=60)

                                  TTCATTAATAGGTCTACCGTTCATAGAACCAGAAACATCCAGCAGCAAAATGCAGGGGCGACGTGGTTCCGGGTTACTGGCAAAATCGCTGGTG                                                             <  SRR4302543.4150146/94‑1 (MQ=60)

                                   TCATTAATAGGTCTACCGTTCATAGAACCAGAAACATCCAGCAGCAAAATGCAGGGGCGACGTGGTTCCGGGTTACTGGCAAAATCGCTGGTGG                                                            <  SRR4302543.3150313/94‑1 (MQ=60)

                                   TCATTAATAGGTCTACCGTTCATAGAACCAGAAACATCCAGCAGCAAAATGCAGGGGCGACGTGGTTCCGGGTTACTGGCAAAATCGCTGGTGG                                                            >  SRR4302543.5992306/1‑94 (MQ=60)

                                     ATTAATATGTCTACCGTTCATAGAACCAGAAACATCCAGCAGCAAAATGCAGGGGCGACGTGGTTCCGGGTTACTGGCAAAATCGCTGGTGGCA                                                          <  SRR4302543.3641264/94‑1 (MQ=60)

                                     ATTAATAGGTCTACCGTTCATAGAACCAGAAACATCCAGCAGCAAAATGCAGGGGCGACGTGGTTCCGGGTTACTGGCAAAATCGCTGGTGGCA                                                          >  SRR4302543.3659182/1‑94 (MQ=60)

                                      TTAATAGGTCTACCGTTCATAGAACCAGAAACATCCAGCAGCAAAATGCAGGGGCGACGTGGTTCCGGGTTACTGGCAAAATCGCTGGTGGCAA                                                         >  SRR4302543.3938586/1‑94 (MQ=60)

                                      TTAATAGGTCTACCGTTCATAGAACCAGAAACATCCAGCAGCAAAATGCAGGGGCGACGTGGTTCCGGGTTACTGGCAAAATCGCTGGTGGCAA                                                         >  SRR4302543.3477068/1‑94 (MQ=60)

                                       TAATAGGTCTACCGTTCATAGAACCAGAAACATCCAGCAGCAAAATGCAGGGGCGACGTGGTTCCGGGTTACTGGCAAAATCGCTGGTGGCAAA                                                        >  SRR4302543.7560429/1‑94 (MQ=60)

                                       TAATAGGTCTACCGTTCATAGAACCAGAAACATCCAGCAGCAAAATGCAGGGGCGACGTGGTTCCGGGTTACTGGCAAAATCGCTGGTGGCAAA                                                        >  SRR4302543.3512125/1‑94 (MQ=60)

                                        AATAGGTCTTCCGTTCATAGAACCAGAAACATCCAGCAGCAAAATGCAGGGGCGACGTGGTTCCGGGTGACTGGCAAAATCGCTGGTGGCAAAC                                                       <  SRR4302543.6286961/94‑1 (MQ=60)

                                           AGGTCTACCGTTCATAGAACCAGAAACATCCAGCAGCAAAATGCAGGGGCGACGTGGTTCCGGGTTACTGGCAAAATCGCTGGTGGCAAACGTG                                                    >  SRR4302543.785994/1‑94 (MQ=60)

                                           AGGTCTACCGTTCATAGAACCAGAAACATCCAGCAGCAAAATGCAGGGGCGACGTGGTTCCGGGTTACTGGCAAAATCGCTGGTGGCAAACGTG                                                    >  SRR4302543.1012435/1‑94 (MQ=60)

                                           AGGTCTACCGTTCATAGAACCAGAAACATCCAGCAGCAAAATGCAGGGGCGACGTGGTTCCGGGTTACTGGCAAAATCGCTGGTGGCAAACGTG                                                    <  SRR4302543.3326958/94‑1 (MQ=60)

                                            GGTCTACCGTTCATAGAACCAGAAACATCCAGCAGCAAAATGCAGGGGCGACGTGGTTCCGGGTTACTGGCAAAATCGCTGGTGGCAAACGTGA                                                   <  SRR4302543.5001675/94‑1 (MQ=60)

                                             GTCTACCGTTCATAGAACCAGAAACATCCAGCAGCAAAATGCAGGGGCGACGTGGTTCCGGGTTACTGGCAAAATCGCTGGTGGCAAACGTGAT                                                  >  SRR4302543.338353/1‑94 (MQ=60)

                                               CTACCGTTCATAGAACCAGAAACATCCAGCAGCAAAATGCAGGGGCGACGTGGTTCCGGGTTACTGGCAAAATCGCTGGTGGCAAACGTGATTT                                                <  SRR4302543.4377968/94‑1 (MQ=60)

                                               CTACCGTTCATAGAACCAGAAACATCCAGCAGCAAAATGCAGGGGCGACGTGGTTCCGGGTTACTGGCAAAATCGCTGGTGGCAAACGTGATTT                                                <  SRR4302543.279496/94‑1 (MQ=60)

                                               CTACCGTTCATAGAACCAGAAACATCCAGCAGCAAAATGCAGGGGCGACGTGGTTCCGGGTTACTGGCAAAATCGCTGGTGGCAAACGTGATTT                                                >  SRR4302543.6645527/1‑94 (MQ=60)

                                                TACCGTTCATAGAACCAGAAACATCCAGCAGCAAAATGCAGGGGCGACGTGGTTCCGGGTTACTGGCAAAATCGCTGGTGGCAAACGTGATTTG                                               <  SRR4302543.6414751/94‑1 (MQ=60)

                                                TACCGTTCATAGAACCAGAAACATCCAGCAGCAAAATGCAGGGGCGACGTGGTTCCGGGTTACTGGCAAAATCGCTGGTGGCAAACGTGATTTG                                               <  SRR4302543.4564928/94‑1 (MQ=60)

                                                 ACCGTTCATAGAACCAGAAACATCCAGCAGCAAAATGCAGGGGCGACGTGGTTCCGGGTTACTGGCAAAATCGCTGGTGGCAAACGTGATTTGT                                              >  SRR4302543.4301497/1‑94 (MQ=60)

                                                  CCGTTCATAGAACCAGAAACATCCAGCAGCAAAATGCAGGGGCGACGTGGTTCCGGGTTACTGGCAAAATCGCTGGTGGCAAACGTGATTTGTT                                             <  SRR4302543.4786666/94‑1 (MQ=60)

                                                    GTTCATAGAACCAGAAACATCCAGCAGCAAAATGCAGGGGCGACGTGGTTCCGGGTTACTGGCAAAATCGCTGGTGGCAAACGTGATTTGTTCG                                           >  SRR4302543.1569989/1‑94 (MQ=60)

                                                    GTTCATAGAACCAGAAACATCCAGCAGCAAAATGCAGGGGCGACGTGGTTCCGGGTTACTGGCAAAATCGCTGGTGGCAAACGTGATTTGTTCG                                           >  SRR4302543.3924044/1‑94 (MQ=60)

                                                      TCATAGAACCAGAAACATCCAGCAGCAAAATGCAGGGGCGACGTGGTTCCGGGTTACTGGCAAAATCGCTGGTGGCAAACGTGATTTGTTCGCT                                         >  SRR4302543.1487637/1‑94 (MQ=60)

                                                      TCATAGAACCAGAAACATCCAGCAGCAAAATGCAGGGGCGACGTGGTTCCGGGTTACTGGCAAAATCGCTGGTGGCAAACGTGATTTGTTCGCT                                         <  SRR4302543.4016624/94‑1 (MQ=60)

                                                      TCATAGAACCAGAAACATCCAGCAGCAAAATGCAGGGGCGACGTGGTTCCGGGTTACTGGCAAAATCGCTGGTGGCAAACGTGATTTGTTCGCT                                         >  SRR4302543.1609269/1‑94 (MQ=60)

                                                       CATAGAACCAGAAACATCCAGCAGCAAAATGCAGGGGCGACGTGGTTCCGGGTTACTGGCAAAATCGCTGGTGGCAAACGTGATTTGTTCGCTC                                        >  SRR4302543.6264487/1‑94 (MQ=60)

                                                        ATAGAACCAGAAACATCCAGCAGCAAAATGCAGGGGCGACGTGGTTCCGGGTTACTGGCAAAATCGCTGGTGGCAAACGTGATTTGTTCGCTCA                                       >  SRR4302543.4018467/1‑94 (MQ=60)

                                                        ATAGAACCAGAAACATCCAGCAGCAAAATGCAGGGGCGACGTGGTTCCGGGTTACTGGCAAAATCGCTGGTGGCAAACGTGATTTGTTCGCTCA                                       >  SRR4302543.5489652/1‑94 (MQ=60)

                                                        ATAGAACCAGAAACATCCAGCAGCAAAATGCAGGGGCGACGTGGTTCCGGGTTACTGGCAAAATCGCTGGTGGCAAACGTGATTTGTTCGCTCA                                       >  SRR4302543.4387956/1‑94 (MQ=60)

                                                        ATAGAACCAGAAACATCCAGCAGCAAAATGCAGGGGCGACGTGGTTCCGGGTTACTGGCAAAATCGCTGGTGGCAAACGTGATTTGTTCGCTCA                                       >  SRR4302543.706093/1‑94 (MQ=60)

                                                         TAGAACCAGAAACATCCAGCAGCAAAATGCAGGGGCGACGTGGTTCCGGGTTACTGGCAAAATCGCTGGTGGCAAACGTGATTTGTTCGCTCAT                                      <  SRR4302543.5775479/94‑1 (MQ=60)

                                                           GAACCAGAAACATCCAGCAGCAAAATGCAGGGGCGACGTGGTTCCGGGTTACTGGCAAAATCGCTGGTGGCAAACGTGATTTGTTCGCTCATAA                                    <  SRR4302543.4696842/94‑1 (MQ=60)

                                                           GAACCAGAAACATCCAGCAGCAAAATGCAGGGGCGACGTGGTTCCGGGTTACTGGCAAAATCGCTGGTGGCAAACGTGATTTGTTCGCTCATAA                                    <  SRR4302543.3343061/94‑1 (MQ=60)

                                                            AACCAGAAACATCCAGCAGCAAAATGCAGGGGCGACGTGGTTCCGGGTTACTGGCAAAATCGCTGGTGGCAAACGTGATTTGTTCGCTCATAAG                                   <  SRR4302543.1481386/94‑1 (MQ=60)

                                                             ACCAGAAACATCCAGCAGCAAAATGCAGGGGCGACGTGGTTCCGGGTTACTGGCAAAATCGCTGGTGGCAAACGTGATTTGTTCGCTCATAAGA                                  <  SRR4302543.5133853/94‑1 (MQ=60)

                                                             ACCAGAAACATCCAGCAGCAAAATGCAGGGGCGACGTGGTTCCGGGTTACTGGCAAAATCGCTGGTGGCAAACGTGATTTGTTCGCTCATAAGA                                  >  SRR4302543.3081341/1‑94 (MQ=60)

                                                              CCAGAAACATCCAGCAGCAAAATGCAGGGGCGACGTGGTTCCGGGTTACTGGCAAAATCGCTGGTGGCAAACGTGATTTGTTCGCTCATAAGAA                                 <  SRR4302543.899389/94‑1 (MQ=60)

                                                              CCAGAAACATCCAGCAGCAAAATGCAGGGGCGACGTGGTTCCGGGTTACTGGCAAAATCGCTGGTGGCAAACGTGATTTGTTCGCTCATAAGAA                                 <  SRR4302543.2739317/94‑1 (MQ=60)

                                                              CCAGAAACATCCAGCAGCAAAATGCAGGGGCGACGTGGTTCCGGGTTACTGGCAAAATCGCTGGTGGCAAACGTGATTTGTTCGCTCATAAGAA                                 >  SRR4302543.7982207/1‑94 (MQ=60)

                                                              ACAGAAACATCCAGCAGCAAAATGCAGGGGCGACGTGGTTCCGGGTTACTGGCAAAATCGCTGGTGGCAAACGTGATTTGTTCGCTCATAAGAA                                 <  SRR4302543.5314231/94‑1 (MQ=60)

                                                               CAGAAACATCCAGCAGCAAAATGCAGGGGCGACGTGGTTCCGGGTTACTGGCAAAATCGCTGGTGGCAAACGTGATTTGTTCGCTCATAAGAAA                                <  SRR4302543.2603901/94‑1 (MQ=60)

                                                               CAGAAACATCCAGCAGCAAAATGCAGGGGCGACGTGGTTCCGGGTTACTGGCAAAATCGCTGGTGGCAAACGTGATTTGTTCGCTCATAAGAAA                                >  SRR4302543.2274968/1‑94 (MQ=60)

                                                                AGAAACATCCAGCAGCAAAATGCAGGGGCGACGTGGTTCCGGGTTACTGGCAAAATCGCTGGTGGCAAACGTGATTTGTTCGCTCATAAGAAAT                               >  SRR4302543.2683148/1‑94 (MQ=60)

                                                                AGAAACATCCAGCAGCAAAATGCAGGGGCGACGTGGTTCCGGGTTACTGGCAAAATCGCTGGTGGCAAACGTGATTTGTTCGCTCATAAGAAAT                               <  SRR4302543.6522271/94‑1 (MQ=60)

                                                                AGAAACATCCAGCAGCAAAATGCAGGGGCGACGTGGTTCCGGGTTACTGGCAAAATCGCTGGTGGCAAACGTGATTTGTTCGCTCATAAGAAAT                               >  SRR4302543.2352113/1‑94 (MQ=60)

                                                                AGAAACATCCAGCAGCAAAATGCAGGGGCGACGTGGTTCCGGGTTACTGGCAAAATCGCTGGTGGCAAACGTGATTTGTTCGCTCATAAGAAAT                               >  SRR4302543.1812923/1‑94 (MQ=60)

                                                                 GAAACATCCAGCAGCAAAATGCAGGGGCGACGTGGTTCCGGGTTACTGGCAAAATCGCTGGTGGCAAACGTGATTTGTTCGCTCATAAGAAATC                              <  SRR4302543.2981004/94‑1 (MQ=60)

                                                                  AAACATCCAGCAGCAAAATGCAGGGGCGACGTGGTTCCGGGTTACTGGCAAAATCGCTGGTGGCAAACGTGATTTGTTCGCTCATAAGAAATCC                             <  SRR4302543.2016032/94‑1 (MQ=60)

                                                                  AAACATCCAGCAGCAAAATGCAGGGGCGACGTGGTTCCGGGTTACTGGCAAAATCGCTGGTGGCAAACGTGATTTGTTCGCTCATAAGAAATCC                             <  SRR4302543.3952351/94‑1 (MQ=60)

                                                                   AACATCCAGCAGCAAAATGCAGGGGCGACGTGGTTCCGGGTTACTGGCAAAATCGCTGGTGGCAAACGTGATTTGTTCGCTCATAAGAAATCCT                            <  SRR4302543.6253363/94‑1 (MQ=60)

                                                                   AACATCCAGCAGCAAAATGCAGGGGCGACGTGGTTCCGGGTTACTGGCAAAATCGCTGGTGGCAAACGTGATTTGTTCGCTCATAAGAAATCCT                            >  SRR4302543.4178791/1‑94 (MQ=60)

                                                                   AACATCCAGCAGCAAAATGCAGGGGCGACGTGGTTCCGGGTTACTGGCAAAATCGCTGGTGGCAAACGTGATTTGTTCGCTCATAAGAAATCCT                            >  SRR4302543.6952947/1‑94 (MQ=60)

                                                                   AACATCCAGCAGCAAAATGCAGGGGCGACGTGGTTCCGGGTTACTGGCAAAATCGCTGGTGGCAAACGTGATTTGTTCGCTCATAAGAAATCCT                            <  SRR4302543.428789/94‑1 (MQ=60)

                                                                    ACATCCAGCAGCAAAATGCAGGGGCGACGTGGTTCCGGGTTACTGGCAAAATCGCTGGTGGCAAACGTGATTTGTTCGCTCATAAGAAATCCTT                           <  SRR4302543.225383/94‑1 (MQ=60)

                                                                      ATCCAGCAGCAAAATGCAGGGGCGACGTGGTTCCGGGTTACTGGCAAAATCGCTGGTGGCAAACGTGATTTGTTCGCTCATAAGAAATCCTTTC                         <  SRR4302543.2125673/94‑1 (MQ=60)

                                                                      ATCCAGCAGCAAAATGCAGGGGCGACGTGGTTCCGGGTTACTGGCAAAATCGCTGGTGGCAAACGTGATTTGTTCGCTCATAAGAAATCCTTTC                         >  SRR4302543.3255847/1‑94 (MQ=60)

                                                                      ATCCAGCAGCAAAATGCAGGGGCGACGTGGTTCCGGGTTACTGGCAAAATCGCTGGTGGCAAACGTGATTTGTTCGCTCATAAGAAATCCTTTC                         <  SRR4302543.437394/94‑1 (MQ=60)

                                                                       TCCAGCAGCAAAATGCAGGGGCGACGTGGTTCCGGGTTACTGGCAAAATCGCTGGTGGCAAACGTGATTTGTTCGCTCATAAGAAATCCTTTCT                        <  SRR4302543.5178518/94‑1 (MQ=60)

                                                                       TCCAGCAGCAAAATGCAGGGGCGACGTGGTTCCGGGTTACTGGCAAAATCGCTGGTGGCAAACGTGATTTGTTCGCTCATAAGAAATCCTTTCT                        <  SRR4302543.5017876/94‑1 (MQ=60)

                                                                       TCCAGCAGCAAAATGCAGGGGCGACGTGGTTCCGGGTTACTGGCAAAATCGCTGGTGGCAAACGTGATTTGTTCGCTCATAAGAAATCCTTTCT                        <  SRR4302543.5017875/94‑1 (MQ=60)

                                                                       TCCAGCAGCAAAATGCAGGGGCGACGTGGTTCCGGGTTACTGGCAAAATCGCTGGTGGCAAACGTGATTTGTTCGCTCATAAGAAATCCTTTCT                        <  SRR4302543.7263180/94‑1 (MQ=60)

                                                                       TCCAGCAGCAAAATGCAGGGGCGACGTGGTTCCGGGTTACTGGCAAAATCGCTGGTGGCAAACGTGATTTGTTCGCTCATAAGAAATCCTTTCT                        <  SRR4302543.6310745/94‑1 (MQ=60)

                                                                          AGCAGCAAAATGCAGGGGCGACGTGGTTCCGGGTTACTGGCAAAATCGCTGGTGGCAAACGTGATTTGTTCGCTCATAAGAAATCCTTTCTTAG                     <  SRR4302543.3121091/94‑1 (MQ=60)

                                                                          AGCAGCAAAATGCAGGGGCGACGTGGTTCCGGGTTACTGGCAAAATCGCTGGTGGCAAACGTGATTTGTTCGCTCATAAGAAATCCTTTCTTAG                     <  SRR4302543.476897/94‑1 (MQ=60)

                                                                          AGCAGCAAAATGCAGGGGCGACGTGGTTCCGGGTTACTGGCAAAATCGCTGGTGGCAAACGTGATTTGTTCGCTCATAAGAAATCCTTTCTTAG                     <  SRR4302543.3130614/94‑1 (MQ=60)

                                                                           GCAGCAAAATGCAGGGGCGACGTGGTTCCGGGTTACTGGCAAAATCGCTGGTGGCAAACGTGATTTGTTCGCTCATAAGAAATCCTTTCTTAGA                    <  SRR4302543.5534308/94‑1 (MQ=60)

                                                                            CAGCAAAATGCAGGGGCGACGTGGTTCCGGGTTACTGGCAAAATCGCTGGTGGCAAACGTGATTTGTTCGCTCATAAGAAATCCTTTCTTAGAG                   <  SRR4302543.6392256/94‑1 (MQ=60)

                                                                             AGCAAAATGCAGGGGCGACGTGGTTCCGGGTTACTGGCAAAATCGCTGGTGGCAAACGTGATTTGTTCGCTCATAAGAAATCCTTTCTTAGAGA                  >  SRR4302543.7986640/1‑94 (MQ=60)

                                                                              GCAAAATGCAGGGGCGACGTGGTTCCGGGTTACTGGCAAAATCGCTGGTGGCAAACGTGATTTGTTCGCTCATAAGAAATCCTTTCTTAGAGAA                 <  SRR4302543.6075002/94‑1 (MQ=60)

                                                                               CAAAATGCAGGGGCGACGTGGTTCCGGGTTACTGGCAAAATCGCTGGTGGCAAACGTGATTTGTTCGCTCATAAGAAATCCTTTCTTAGAGAAT                <  SRR4302543.3741236/94‑1 (MQ=60)

                                                                               CAAAATGCAGGGGCGACGTGGTTCCGGGTTACTGGCAAAATCGCTGGTGGCAAACGTGATTTGTTCGCTCATAAGAAATCCTTTCTTAGAGAAT                >  SRR4302543.134362/1‑94 (MQ=60)

                                                                                AAAATGCAGGGGCGACGTGGTTCCGGGTTACTGGCAAAATCGCTGGTGGCAAACGTGATTTGTTCGCTCATAAGAAATCCTTTCTTAGAGAATT               >  SRR4302543.2108981/1‑94 (MQ=60)

                                                                                  AATGCAGGGGCGACGTGGTTCCGGGTTACTGGCAAAATCGCTGGTGGCAAACGTGATTTGTTCGCTCATAAGAAATCCTTTCTTAGAGAATTAT             >  SRR4302543.3701763/1‑94 (MQ=60)

                                                                                   ATGCAGGGGCGACGTGGTTCCGGGTTACTGGCAAAATCGCTGGTGGCAAACGTGATTTGTTCGCTCATAAGAAATCCTTTCTTAGAGAATTATG            >  SRR4302543.4807371/1‑94 (MQ=60)

                                                                                   ATGCAGGGGCGACGTGGTTCCGGGTTACTGGCAAAATCGCTGGTGGCAAACGTGATTTGTTCGCTCATAAGAAATCCTTTCTTAGAGAATTATC            <  SRR4302543.2157614/94‑1 (MQ=60)

                                                                                    TGCAGGGGCGACGTGGTTCCGGGTTACTGGCAAAATCGCTGGTGGCAAACGTGATTTGTTCGCTCATAAGAAATCCTTTCTTAGAGAATTATCG           <  SRR4302543.3996444/94‑1 (MQ=60)

                                                                                    TGCAGGGGCGACGTGGTTCCGGGTTACTGGCAAAATCGCTGGTGGCAAACGTGATTTGTTCGCTCATAAGAAATCCTTTCTTAGAGAATTATCG           <  SRR4302543.3461885/94‑1 (MQ=60)

                                                                                    TGCAGGGGCGACGTGGTTCCGGGTTACTGGCAAAATCGCTGGTGGCAAACGTGATTTGTTCGCTCATAAGAAATCCTTTCTTAGAGAATTATCG           <  SRR4302543.36325/94‑1 (MQ=60)

                                                                                     GCAGGGGCGACGTGGTTCCGGGTTACTGGCAAAATCGCTGGTGGCAAACGTTATTTGTTCGCTCATAAGAAATCCTTTCTTAGAGAATTATCGA          <  SRR4302543.5304316/94‑1 (MQ=60)

                                                                                       AGGGGCGACGTGGTTCCGGGTTACTGGCAAAATCGCTGGTGGCAAACGTGATTTGTTCGCTCATAAGAAATCCTTTCTTAGAGAATTATCGAGG        <  SRR4302543.3332449/94‑1 (MQ=60)

                                                                                         GGGCGACGTGGTTCCGGGTTACTGGCAAAATCGCTGGTGGCAAACGTGATTTGTTCGCTCATAAGAAATCCTTTCTTAGAGAATTATCGAGGTC      <  SRR4302543.6946444/94‑1 (MQ=60)

                                                                                            CGACGTGGTTCCGGGTTACTGGCAAAATCGCTGGTGGCAAACGTGATTTGTTCGCTCATAAGAAATCCTTTCTTAGAGAATTATCGAGGTCCGG   >  SRR4302543.2442451/1‑94 (MQ=60)

                                                                                             GACGTGGTTCCGGGTTACTGGCAAAATCGCTGGTGGCAAACGTGATTTGTTCGCTCATAAGAAATCCTTTCTTAGAGAATTATCGAGGTCCGGT  >  SRR4302543.5010026/1‑94 (MQ=60)

GTTCATCACGAAAGGTAACCAATCCGGCGTTAAGTTCATTAATAGGTCTACCGTTCATAGAACCAGAAACATCCAGCAGCAAAATGCAGGGGCAACGTGGTTCCGGGTTACTGGCAAAATCGCTGGTGGCAAACGTGATTTGTTCGCTCATAAGAAATCCTTTCTTAGAGAATTATCGAGGTCCGGT  >  NC_000913/2151000‑2151186

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 23 ≤` `ATCG/ATCG` `< 30 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`