Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I1 R1
|
1696 |
279.3 |
15874187 |
97.8% |
15524954 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
2,172,208 |
T→C |
M31V (ATG→GTG) |
gatC ← |
PTS system galactitol‑specific enzyme IIC |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 2,172,208 | 0 | T | C | 100.0%
| 682.7
/ NA
| 214 | M31V (ATG→GTG) | gatC | PTS system galactitol‑specific enzyme IIC |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (113/101); total (113/101) |
Only 100 of 217 total aligned reads displayed.
TGGAATCCAGCATTAAGCCAATCACAAGGCCAATGCCAACAAAGCCAATCCCGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCATGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATCACCGTAGGGCCGAGGTCGAGAATATAACGCATGACTTCTGAAAACA > NC_000913/2172118‑2172297
|
gAATCCAGCATTAAGCCAATCACAAGGCCAATGCCAACAAAGCCAATCCCGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCt > 1:3910673/1‑93 (MQ=255)
aTCCAGCATTAAGCCAATCACAAGGCCAATGCCAACAAAGCCAATCCCGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTaa > 2:5202357/1‑93 (MQ=255)
aTCCAGCATTAAGCCAATCACAAGGCCAATGCCAACAAAGCCAATCCCGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTaa < 2:6360370/93‑1 (MQ=255)
tCCAGCATTAAGCCAATCACAAGGCCAATGCCAACAAAGCCAATCCCGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAat < 2:4159157/93‑1 (MQ=255)
ccAGCATTAAGCCAATCACAAGGCCAATGCCAACAAAGCCAATCCCGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAata < 1:6279024/93‑1 (MQ=255)
ccAGCATTAAGCCAATCACAAGGCCAATGCCAACAAAGCCAATCCCGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAata < 2:3455053/93‑1 (MQ=255)
aGCATTAAGCCAATCACAAGGCCAATGCCAACAAAGCCAATCCCGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATAtt < 2:5479772/93‑1 (MQ=255)
gCATTAAGCCAATCACAAGGCCAATGCCAACAAAGCCAATCCCGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATAttt < 2:5822610/93‑1 (MQ=255)
aTTAAGCCAATCACAAGGCCAATGCCAACAAAGCCAATCCCGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTa > 2:271998/1‑93 (MQ=255)
aTTAAGCCAATCACAAGGCCAATGCCAACAAAGCCAATCCCGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTa > 1:2317939/1‑93 (MQ=255)
ttAAGCCAATCACAAGGCCAATGCCAACAAAGCCAATCCCGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAg < 1:5049437/93‑1 (MQ=255)
ttAAGCCAATCACAAGGCCAATGCCAACAAAGCCAATCCCGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAg < 1:4874137/93‑1 (MQ=255)
tAAGCCAATCACAAGGCCAATGCCAACAAAGCCAATCCCGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGa < 1:7239715/93‑1 (MQ=255)
aaGCCAATCACAAGGCCAATGCCAACAAAGCCAATCCCGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGaa < 1:4415843/93‑1 (MQ=255)
aaTCACAAGGCCAATGCCAACAAAGCCAATCCCGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAaat < 2:2065922/93‑1 (MQ=255)
aaTCACAAGGCCAATGCCAACAAAGCCAATCCCGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAaat > 2:4186355/1‑93 (MQ=255)
aTCACAAGGCCAATGCCAACAAAGCCAATCCCGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAaata > 2:4389820/1‑93 (MQ=255)
aTCACAAGGCCAATGCCAACAAAGCCAATCCCGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAaata < 2:842984/93‑1 (MQ=255)
aTCACAAGGCCAATGCCAACAAAGCCAATCCCGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAaata > 1:2071688/1‑93 (MQ=255)
tCACAAGGCCAATGCCAACAAAGCCAATCCCGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAaataa > 1:4604025/1‑93 (MQ=255)
tCACAAGGCCAATGCCAACAAAGCCAATCCCGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAaataa > 2:5023875/1‑93 (MQ=255)
acaAGGCCAATGCCAACAAAGCCAATCCCGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAatg > 2:442212/1‑93 (MQ=255)
acaAGGCCAATGCCAACAAAGCCAATCCCGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAatg > 1:2120410/1‑93 (MQ=255)
acaAGGCCAATGCCAACAAAGCCAAGCCCGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAatg > 1:3683220/1‑93 (MQ=255)
caAGGCCAATGCCAACAAAGCCAATCCCGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAatga < 1:7773673/93‑1 (MQ=255)
caAGGCCAATGCCAACAAAGCCAATCCCGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCGTCACGCCTAATATTTTAGAAAAAATAatga < 2:5998447/93‑1 (MQ=255)
aaGGCCAATGCCAACAAAGCCAATCCCGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAatgat < 1:100732/93‑1 (MQ=255)
aaGGCCAATGCCAACAAAGCCAATCCCGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAatgat > 1:2745960/1‑93 (MQ=255)
gCCAATGCCAACAAAGCCAATCCCGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATGATGAc < 1:2096900/93‑1 (MQ=255)
cAATGCCAACAAAGCCAATCCCGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATGATGACaa < 1:1816803/93‑1 (MQ=255)
aaTGCCAACAAAGCCAATCCCGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATGATGACAAt < 2:3375335/93‑1 (MQ=255)
aaTGCCAACAAAGCCAATCCCGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATGATGACAAt < 2:697980/93‑1 (MQ=255)
aTGCCAACAAAGCCAATCCCGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATGATGACAATc < 2:2292949/93‑1 (MQ=255)
aTGCCAACAAAGCCAATCCCGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATGATGACAATc > 2:2768185/1‑93 (MQ=255)
aTGCCAACAAAGCCAATCCCGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATGATGACAATc < 1:1410834/93‑1 (MQ=255)
aTGCCAACAAAGCCAATCCCGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATGATGACAATc > 1:2047542/1‑93 (MQ=255)
tGCCAACAAAGCCAATCCCGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATGATGACAATCg > 2:1172610/1‑93 (MQ=255)
tGCCAACAAAGCCAATCCCGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATGATGACAATCg < 2:2014035/93‑1 (MQ=255)
ccAACAAAGCCAATCCCGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATGATGACAATCGgc < 1:2524958/93‑1 (MQ=255)
ccAACAAAGCCAATCCCGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATGATGACAATCGgc < 1:7373508/93‑1 (MQ=255)
caacaaAGCCAATCCCGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATGATGACAATCGgca < 1:5149926/93‑1 (MQ=255)
acaaAGCCAATCCCGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATGATGACAATCGgcagc > 1:6370953/1‑93 (MQ=255)
aaaGCCAATCCCGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAATCTAATGATGACAATCGGCAGCAt > 2:5333933/1‑93 (MQ=255)
aaaGCCAATCCCGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCAt < 2:7863409/93‑1 (MQ=255)
aaGCCAATCCCGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAACTAATGATGACAATCGGCAGCATc > 2:5368905/1‑93 (MQ=255)
aaGCCAATCCCGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATc > 1:1618869/1‑93 (MQ=255)
aaGCCAATCCCGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATc > 1:5572773/1‑93 (MQ=255)
aGCCAATCCCGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATCa < 1:658243/93‑1 (MQ=255)
gCCAATCCCGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATCAc < 1:2666268/93‑1 (MQ=255)
gCCAATCCCGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATCAc < 1:3358350/93‑1 (MQ=255)
ccAATCCCGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATCAcc < 2:7062541/93‑1 (MQ=255)
ccAATCCCGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATCAcc < 2:6810189/93‑1 (MQ=255)
cAATCCCGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATCACCg > 1:3733921/1‑93 (MQ=255)
cAATCCCGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATCACCg > 2:4018410/1‑93 (MQ=255)
aTCCCGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATCACCGTa < 1:7569646/93‑1 (MQ=255)
aTCCCGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATCACCGTa > 1:4026758/1‑93 (MQ=255)
tCCCGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATCACCGTAg < 2:649432/93‑1 (MQ=255)
tCCCGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATCACCGTAg > 1:6975048/1‑93 (MQ=255)
tCCCGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATCACCGTAg < 1:1046850/93‑1 (MQ=255)
gATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATGATGACGATCGGCAGCATCACCGTAGGGcc > 2:4290402/1‑93 (MQ=255)
atatGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATCACCGTAGGGCCg > 2:1198541/1‑93 (MQ=255)
tatGCAGCCCCGCTTTAACGCAACCGCCTGCCTGCACGCCTAATATGTTAGAAAAAATAATGATGACAATCGGCAGCATCACCGTAGGGCCGa < 2:607110/93‑1 (MQ=255)
tatGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATCACCGTAGGGCCGa < 2:1788025/93‑1 (MQ=255)
tatGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATCACCGTAGGGCCGa > 1:2970335/1‑93 (MQ=255)
atGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATCACCGTAGGGCCGAg < 2:3506354/93‑1 (MQ=255)
atGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATCACCGTAGGGCCGAg < 1:3992930/93‑1 (MQ=255)
atGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATCACCGTAGGGCCGAg < 1:4246345/93‑1 (MQ=255)
tGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATCACCGTAGGGCCGAgg > 1:5776711/1‑93 (MQ=255)
tGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATCACCGTAGGGCCGAgg > 2:5505861/1‑93 (MQ=255)
aGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATCACCGTAGGGCCGAGGTCg > 2:1117760/1‑93 (MQ=255)
gACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATCACCGTAGGGCCGAGGTCga < 1:6075080/93‑1 (MQ=255)
gACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATCACCGTAGGGCCGAGGTCga > 1:760907/1‑93 (MQ=255)
gACCCGCTTTAAAGCAATCGCCTGCCTTCACACCTAATATTTTAGAGAAAATAATGATGACAATCGGCAGCATCACCGTAGGGCCGAGGTCga > 2:4996051/1‑93 (MQ=255)
cccGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATCACCGTAGGGCCGAGGTCgaga < 1:5833439/93‑1 (MQ=255)
ccGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATCACCGTAGGGCCGAGGTCGAGaa < 2:475387/93‑1 (MQ=255)
cGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATCACCGTAGGGCCGAGGTCGAGAat > 2:766823/1‑93 (MQ=255)
cGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATCACCGTAGGGCCGAGGTCGAGAat > 1:7125676/1‑93 (MQ=255)
cGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATCACCGTAGGGCCGAGGTCGAGAat < 2:2125901/93‑1 (MQ=255)
cTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATCACCGTAGGGCCGAGGTCGAGAatat > 2:16287/1‑93 (MQ=255)
cTTTAAAGCAATCCCCTGCCTTCACGCGTAATATTTTAGAAAACATAATGATGACAATCGGCAGCATCACCGTAGATGCGAGGTGGATGatat > 2:927816/1‑93 (MQ=255)
tttAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATCACCGTAGGGCCGAGGTCGAGAAtata > 2:1757848/1‑93 (MQ=255)
ttAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATCACCGTAGGGCCGAGGTCGAGAATATaa < 1:4820736/93‑1 (MQ=255)
tAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATCACCGTAGGGCCGAGGTCGAGAATATAAc > 2:4849000/1‑93 (MQ=255)
aaaGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATCACCGTAGGGCCGAGGTCGAGAATATAACg > 1:4758139/1‑93 (MQ=255)
aaaGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATCACCGTAGGGCCGAGGTCGAGAATATAACg > 1:6129276/1‑93 (MQ=255)
aGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATCACCGTAGGGCCGAGGTCGAGAATATAACGCa < 2:3772406/93‑1 (MQ=255)
gCAATCGCCTACCTTCACGCCTAATATTTTAGAAAAAATAATGATGACAAGCGGCAGCATCACCGTAGGCCCGAGGTCGAGAATATAACGCAt < 2:5601842/93‑1 (MQ=255)
aaTCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATCACCGTAGGGCCGAGGTCGAGAATATAACGCATGa > 2:5313500/1‑93 (MQ=255)
aTCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATCACCGTAGGGCCGAGGTCGAGAATATAACGCATGAc < 2:2832026/93‑1 (MQ=255)
aTCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATCACCGTAGGGCCGAGGTCGAGAATATAACGCATGAc > 2:1501754/1‑93 (MQ=255)
tCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATCACCGTAGGGCCGAGGTCGAGAATATAACGCATGACt > 1:7436546/1‑93 (MQ=255)
gcctgcctTCACGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATCACCGTAGGGCCGAGGTCGAGAATATAACGCATGACTTc < 2:323988/93‑1 (MQ=255)
cctgcctTCACGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATCACCGTAGGGCCGAGGTCGAGTATATAACGCATGACTTCt > 2:768902/1‑93 (MQ=255)
ctgcctTCACGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATCACCGTAGGGCCGAGGTCGAGAATATAACGCATGACTTCTg < 2:4805045/93‑1 (MQ=255)
ctgcctTCACGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATCACCGTAGGGCCGAGGTCGAGAATATAACGCATGACTTCTg > 2:7579616/1‑93 (MQ=255)
cctTCACGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATCACCGTAGGGCCGAGGTCGAGAATATAACGCATGACTTCTGaaa < 1:3549645/93‑1 (MQ=255)
ctTCACGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATCACCGTAGGGCCGAGGTCGAGAATATAACGCATGACTTCTGaaaa < 1:547068/93‑1 (MQ=255)
ttCACGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATCACCGTAGGGCCGAGGTCGAGAATATAACGCATGACTTCTGAAAAc > 1:7019961/1‑93 (MQ=255)
ttCACGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATCACCGTAGGGCCGAGGTCGAGAATATAACGCATGACTTCTGAAAAc > 1:1191241/1‑93 (MQ=255)
ctCACGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATCACCGTAGGGCCGAGGTCGAGAATATAACGCATGACTTCTGAAAAc < 2:462390/92‑1 (MQ=255)
|
TGGAATCCAGCATTAAGCCAATCACAAGGCCAATGCCAACAAAGCCAATCCCGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCATGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATCACCGTAGGGCCGAGGTCGAGAATATAACGCATGACTTCTGAAAACA > NC_000913/2172118‑2172297
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
CAATGGAATCCAGCATTAAGCCAATCACAAGGCCAATGCCAACAAAGCCAATCCCGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCATGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATCACCGTAGGGCCGAGGTCGAGAATATAACGCATGACTTCTGAAAACATAGG > NC_000913/2172115‑2172301
|
CAATGGAATCCAGCATTAAGCCAATCACAAGGCCAATGCCAACAAAGCCAATCCCGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCAC > SRR4302543.3354463/1‑94 (MQ=60)
AATGGAATCCAGCATTAAGCCAATCACAAGGCCAATGCCAACAAAGCCAATCCCGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACG < SRR4302543.6289501/94‑1 (MQ=60)
AATGGAATCCAGCATTAAGCCAATCACAAGGCCAATGCCAACAAAGCCAATCCCGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACG < SRR4302543.4321732/94‑1 (MQ=60)
AATGGAATCCAGCATTAAGCCAATCACAAGGCCAATGCCAACAAAGCCAATCCCGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACG < SRR4302543.7877939/94‑1 (MQ=60)
TGGAATCCAGCATTAAGCCAATCACAAGGCCAATGCCAACAAAGCCAATCCCGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCC < SRR4302543.7727248/94‑1 (MQ=60)
GGAATCCAGCATTAAGCCAATCACAAGGCCAATGCCAACAAAGCCAATCCCGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCT > SRR4302543.3945193/1‑94 (MQ=60)
GAATCCAGCATTAAGCCAATCACAAGGCCAATGCCAACAAAGCCAATCCCGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTA < SRR4302543.1219371/94‑1 (MQ=60)
GAATCCAGCATTAAGCCAATCACAAGGCCAATGCCAACAAAGCCAATCCCGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTA > SRR4302543.2514867/1‑94 (MQ=60)
AATCCAGCATTAAGCCAATCACAAGGCCAATGCCAACAAAGCCAATCCCGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAA < SRR4302543.4612671/94‑1 (MQ=60)
ATCCAGCATTAAGCCAATCACAAGGCCAATGCCAACAAAGCCAATCCCGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAAT > SRR4302543.1036692/1‑94 (MQ=60)
TCCAGCATTAAGCCAATCACAAGGCCAATGCCAACAAAGCCAATCCCGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATA < SRR4302543.6630004/94‑1 (MQ=60)
ACCAGCATTAAGCCAATCACAAGGCCAATGCCAACAAAGCCAATCCCGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATA < SRR4302543.2757584/94‑1 (MQ=60)
CCAGCATTAAGCCAATCACAAGGCCAATGCCAACAAAGCCAATCCCGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATAT < SRR4302543.6338208/94‑1 (MQ=60)
CCAGCATTAAGCCAATCACAAGGCCAATGCCAACAAAGCCAATCCCGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATAT < SRR4302543.1437878/94‑1 (MQ=60)
AGCATTAAGCCAATCACAAGGCCAATGCCAACAAAGCCAATCCCGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTT > SRR4302543.1188916/1‑94 (MQ=60)
CATTAAGCCAATCACAAGGCCAATGCCAACAAAGCCAATCCCGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTA > SRR4302543.2339014/1‑94 (MQ=60)
CATTAAGCCAATCACAAGGCCAATGCCAACAAAGCCAATCCCGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTA < SRR4302543.3710866/94‑1 (MQ=60)
TTAAGCCAATCACAAGGCCAATGCCAACAAAGCCAATCCCGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGA < SRR4302543.4918566/94‑1 (MQ=60)
TTAAGCCAATCACAAGGCCAATGCCAACAAAGCCAATCCCGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGA < SRR4302543.5095349/94‑1 (MQ=60)
TAAGCCAATCACAAGGCCAATGCCAACAAAGCCAATCCCGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAA < SRR4302543.7309795/94‑1 (MQ=60)
AAGCCAATCACAAGGCCAATGCCAACAAAGCCAATCCCGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAA < SRR4302543.4455868/94‑1 (MQ=60)
AATCACAAGGCCAATGCCAACAAAGCCAATCCCGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATA > SRR4302543.6179237/1‑94 (MQ=60)
AATCACAAGGCCAATGCCAACAAAGCCAATCCCGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATA > SRR4302543.2090195/1‑94 (MQ=60)
AATCACAAGGCCAATGCCAACAAAGCCAATCCCGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATA > SRR4302543.2090196/1‑94 (MQ=60)
AAACACAAGGCCAATGCCAACAAAGCCAATCCCGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATA < SRR4302543.2568814/94‑1 (MQ=60)
ATCACAAGGCCAATGCCAACAAAGCCAATCCCGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAA > SRR4302543.4645852/1‑94 (MQ=60)
TCACAAGGCCAATGCCAACAAAGCCAATCCCGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAAT < SRR4302543.5364229/94‑1 (MQ=60)
CACAAGGCCAATGCCAACAAAGCCAATCCCGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATG > SRR4302543.3715583/1‑94 (MQ=60)
CACAAGGCCAATGCCAACAAAGCCAATCCCGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATG > SRR4302543.2139392/1‑94 (MQ=60)
CACAAGGCCAATGCCAACAAAGCCAATCCCGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATG < SRR4302543.2950416/94‑1 (MQ=60)
CACAAGGCCAATGCCAACAAAGCCAATCCCGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATG > SRR4302543.7663986/1‑94 (MQ=60)
CACAAGGCCAATGCCAACAAAGCCAATCCCGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATA > SRR4302543.2139391/1‑94 (MQ=60)
CACAAGGCCAATGCCAACAAAGCCAAGCCCGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATG > SRR4302543.3715582/1‑94 (MQ=60)
CACAAGCACAATGCCAACAAAACCAATCCCGAGATGCAGATCCGCTTTAAAGCAATCTCCCGCCTTCACGCCTAATATTTTAGAAAAAATAATG < SRR4302543.3420927/94‑1 (MQ=60)
ACAAGGCCAATGCCAACAAAGCCAATCCCGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATGA > SRR4302543.6259373/1‑94 (MQ=60)
CAAGGCCAATGCCAACAAAGCCAATCCCGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATGAT < SRR4302543.7846993/94‑1 (MQ=60)
CAAGGCCAATGCCAACAAAGCCAATCCCGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATGAT > SRR4302543.2770926/1‑94 (MQ=60)
AAGGCCAATGCCAACAAAGCCAATCCCGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATGATG < SRR4302543.4690685/94‑1 (MQ=60)
AAGGCCAATGCCAACAAAGCCAATCCCGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATGATG < SRR4302543.101667/94‑1 (MQ=60)
GCCAATGCCAACAAAGCCAATCCCGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATGATGACA < SRR4302543.2115642/94‑1 (MQ=60)
CCAATGCCAACAAAGCCAATCCCGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATGATGACAA > SRR4302543.2613357/1‑94 (MQ=60)
CCAATGCCAACAAAGCCAATCCCGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATGATGACAA > SRR4302543.6844907/1‑94 (MQ=60)
CAATGCCAACAAAGCCAATCCCGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATGATGACAAT < SRR4302543.1833098/94‑1 (MQ=60)
CAATGCCAACAAAGCCAATCCCGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATGATGACAAT < SRR4302543.1656133/94‑1 (MQ=60)
CAATGCCAACAAAGCCAATCCCGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATGATGACAAT < SRR4302543.7431392/94‑1 (MQ=60)
AATGCCAACAAAGCCAATCCCGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATGATGACAATC > SRR4302543.2065889/1‑94 (MQ=60)
ATGCCAACAAAGCCAATCCCGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATGATGACAATCG < SRR4302543.1423587/94‑1 (MQ=60)
ATGCCAACAAAGCCAATCCCGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATGATGACAATCG > SRR4302543.7150261/1‑94 (MQ=60)
CCAACAAAGCCAATCCCGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCA < SRR4302543.7444392/94‑1 (MQ=60)
CCAACAAAGCCAATCCCGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCA < SRR4302543.2547920/94‑1 (MQ=60)
CAACAAAGCCAATCCCGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAG < SRR4302543.2045060/94‑1 (MQ=60)
CAACAAAGCCAATCCCGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAG > SRR4302543.3233548/1‑94 (MQ=60)
CAACAAAGCCAATCCCGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAG > SRR4302543.6401116/1‑94 (MQ=60)
CAACAAAGCCAATCCCGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAG > SRR4302543.5024143/1‑94 (MQ=60)
CAACAAAGCCAATCCCGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAG < SRR4302543.5196475/94‑1 (MQ=60)
AACAAAGCCAATCCCGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGC > SRR4302543.6430875/1‑94 (MQ=60)
ACAAAGCCAATCCCGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCA < SRR4302543.5123327/94‑1 (MQ=60)
AAAGCCAATCCCGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATC > SRR4302543.1633298/1‑94 (MQ=60)
AAAGCCAATCCCGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATC > SRR4302543.5623492/1‑94 (MQ=60)
AGCCAATCCCGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATCAC < SRR4302543.664287/94‑1 (MQ=60)
GCCAATCCCGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATCACC < SRR4302543.1999494/94‑1 (MQ=60)
GCCAATCCCGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATCACC < SRR4302543.3388561/94‑1 (MQ=60)
GCCAATCCCGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATCACC < SRR4302543.2690445/94‑1 (MQ=60)
CCAATCCCGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATCACCG > SRR4302543.3766762/1‑94 (MQ=60)
CCAATCCCGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATGATGACAATCAGCAGCATCACCG > SRR4302543.487213/1‑94 (MQ=60)
AATCCCGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATCACCGTA > SRR4302543.4062746/1‑94 (MQ=60)
AATCCCGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATCACCGTA > SRR4302543.4062745/1‑94 (MQ=60)
AATCCCGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATCACCGTA > SRR4302543.3978043/1‑94 (MQ=60)
ATCCCGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATCACCGTAG < SRR4302543.7641665/94‑1 (MQ=60)
ATCCCGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATCACCGTAG > SRR4302543.7040690/1‑94 (MQ=60)
TCCCGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATCACCGTAGG < SRR4302543.1056222/94‑1 (MQ=60)
CCGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATCACCGTAGGGC < SRR4302543.3544375/94‑1 (MQ=60)
ATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATCACCGTAGGGCCGA > SRR4302543.4237169/1‑94 (MQ=60)
ATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATCACCGTAGGGCCGA > SRR4302543.2997308/1‑94 (MQ=60)
aagaCAGACCCGCTTTAAAGCAATGGCCGGCCGTCGCGCCTAATATGTGAGAAAAAATAATGATGACAATCGGCAGCATCACCGTAGGGCCGAG < SRR4302543.3306631/90‑1 (MQ=60)
ATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATCACCGTAGGGCCGAGG > SRR4302543.7907970/1‑94 (MQ=60)
ATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATCACCGTAGGGCCGAGG > SRR4302543.7873357/1‑94 (MQ=60)
ATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATCACCGTAGGGCCGAGG < SRR4302543.4028469/94‑1 (MQ=60)
ATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATCACCGTAGGGCCGAGG > SRR4302543.5829293/1‑94 (MQ=60)
ATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATCACCGTAGGGCCGAGG < SRR4302543.4284878/94‑1 (MQ=60)
AGACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATCACCGTAGGGCCGAGGTCGA > SRR4302543.767620/1‑94 (MQ=60)
GACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATCACCGTAGGGCCGAGGTCGAG < SRR4302543.6037620/94‑1 (MQ=60)
GACCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATCACCGTAGGGCCGAGGTCGAG < SRR4302543.6132658/94‑1 (MQ=60)
CCCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATCACCGTAGGGCCGAGGTCGAGAA < SRR4302543.5886496/94‑1 (MQ=60)
ACCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATCACCGTAGGGCCGAGGTCGAGAA < SRR4302543.5886495/94‑1 (MQ=60)
CCGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATCACCGTAGGGCCGAGGTCGAGAAT > SRR4302543.7194905/1‑94 (MQ=60)
CGCTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATCACCGTAGGGCCGAGGTCGAGAATA > SRR4302543.4327347/1‑94 (MQ=60)
CTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATCACCGTAGGGCCGAGGTCGAGAtttta > SRR4302543.6179152/1‑89 (MQ=60)
CTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATCACCGTAGGGCCGAGGTCGAGAATATA > SRR4302543.7289584/1‑94 (MQ=60)
CTTTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATCACCGTAGGGCCGAGGTCGAGAATATA < SRR4302543.7445330/94‑1 (MQ=60)
TTAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATCACCGTAGGGCCGAGGTCGAGAATATAAC < SRR4302543.4864743/94‑1 (MQ=60)
TAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATCACCGTAGGGCCGAGGTCGAGAATATAACG > SRR4302543.4801617/1‑94 (MQ=60)
TAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATCACCGTAGGGCCGAGGTCGAGAATATAACG > SRR4302543.633044/1‑94 (MQ=60)
TAAAGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATCACCGTAGGGCCGAGGTCGAGAATATAACG > SRR4302543.6187331/1‑94 (MQ=60)
AGCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATCACCGTAGGGCCGAGGTCGAGAATATAACGCAT < SRR4302543.3901881/94‑1 (MQ=60)
GCAATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATCACCGTAGGGCCGAGGTCGAGAATATAACGCATG < SRR4302543.2096894/94‑1 (MQ=60)
AATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATCACCGTAGGGCCGAGGTCGAGAATATAACGCATGAC > SRR4302543.448641/1‑94 (MQ=60)
ATCGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATCACCGTAGGGCCGAGGTCGAGAATATAACGCATGACT > SRR4302543.7507833/1‑94 (MQ=60)
CGCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATCACCGTAGGGCCGAGGTCGAGAATATAACGCATGACTTC > SRR4302543.4853757/1‑94 (MQ=60)
GCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATCACCGTAGGGCCGAGGTCGAGAATATAACGCATGACTTCT > SRR4302543.5698594/1‑94 (MQ=60)
GCCTGCCTTCACGCCTAATATTTTAGAAAAAATAATAATGACAATCGGCAGCATCACCGTAGGGCCGAGGTCGAGAATATAACGCATGACTTCT > SRR4302543.7635896/1‑94 (MQ=60)
CTGCCTTCACGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATCACCGTAGGGCCGAGGTCGAGAATATAACGCATGACTTCTGA > SRR4302543.5568612/1‑94 (MQ=60)
GCCTTCACGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATCACCGTAGGGCCGAGGTCGAGAATATAACGCATGACTTCTGAAA > SRR4302543.37284/1‑94 (MQ=60)
CCTTCACGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATCACCGTAGGGCCGAGGTCGAGAATATAACGCATGACTTCTGAAAA < SRR4302543.3581142/94‑1 (MQ=60)
CTTCACGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATCACCGTAGGGCCGAGGTCGAGAATATAACGCATGACTTCTGAAAAC > SRR4302543.1201983/1‑94 (MQ=60)
CTTCACGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATCACCGTAGGGCCGAGGTCGAGAATATAACGCATGACTTCTGAAAAC > SRR4302543.719739/1‑94 (MQ=60)
CTTCACGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATCACCGTAGGGCCGAGGTCGAGAATATAACGCATGACTTCTGAAAAC > SRR4302543.7087149/1‑94 (MQ=60)
CTTCACGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATCACCGTAGGGCCGAGGTCGAGAATATAACGCATGACTTCTGAAAAC > SRR4302543.7087148/1‑94 (MQ=60)
CTTCACGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATCACCGTAGGGCCGAGGTCGAGAATATAACGCATGACTTCTGAAAAC > SRR4302543.5498323/1‑94 (MQ=60)
CTTCACGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATCACCGTAGGGCCGAGGTCGAGAATATAACGCATGACTTCTGAAAAC < SRR4302543.552114/94‑1 (MQ=60)
TCACGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATCACCGTAGGGCCGAGGTCGAGAATATAACGCATGACTTCTGAAAACAT > SRR4302543.268110/1‑94 (MQ=60)
TCACGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATCACCGTAGGGCCGAGGTCGAGAATATAACGCATGACTTCTGAAAACAT < SRR4302543.2204692/94‑1 (MQ=60)
CACGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATCACCGTAGTGACGAGGTCGAGAATATAACGCATGACTTCTGAAAACATA > SRR4302543.3963935/1‑94 (MQ=60)
CACGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATCACCGTAGGGCCGAGGTCGAGAATATAACGCATGACTTCTGAAAACATA < SRR4302543.4301386/94‑1 (MQ=60)
CGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATCACCGTAGGGCCGAGGTCGAGAATATAACGCATGACTTCTGAAAACATAGG > SRR4302543.6323109/1‑94 (MQ=60)
CGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATCACCGTAGGGCCGAGGTCGAGAATATAACGCATGACTTCTGAAAACATAGG > SRR4302543.2152087/1‑94 (MQ=60)
CGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATCACCGTAGGGCCGAGGTCGAGAATATAACGCATGACTTCTGAAAACATAGG > SRR4302543.6314479/1‑94 (MQ=60)
|
CAATGGAATCCAGCATTAAGCCAATCACAAGGCCAATGCCAACAAAGCCAATCCCGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCATGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATCACCGTAGGGCCGAGGTCGAGAATATAACGCATGACTTCTGAAAACATAGG > NC_000913/2172115‑2172301
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| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
