Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I1 R1 1696 279.3 15874187 97.8% 15524954 93.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 2,276,343 T→C intergenic (‑86/+247) yejG ← / ← bcr hypothetical protein/bicyclomycin resistance protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009132,276,3430TC100.0% 814.9 / NA 254intergenic (‑86/+247)yejG/bcrhypothetical protein/bicyclomycin resistance protein
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base C (111/143);  total (111/143)

Only 100 of 257 total aligned reads displayed.

GTCACTTATTTTCCCCGGAAGCACATTCACTTCACAATTTGTTTACATCAATTTTAACACATCATCAACAATCCGTCTTTATACAGATCGTAAAGATTGATGCCTCGCCTGCGTGGCCTCTATGGCTCTGATTTAAGTAATATCTGCGGGCGTGGTCACGTTTGCGGGGCTATATGTACC  >  NC_000913/2276253‑2276432
                                                                                          |                                                                                         
gTCACTTATTTTCCCCGGAAGCACATTCACTTCACAATTTGTTTACATCAATTTTAACACATCATCAACAATCCGTCTTTATACAGATCGCaa                                                                                         >  1:4787231/1‑93 (MQ=255)
gTCACTTATTTTCCCCGGAAGCACATTCACTTCACAATTTGTTTACATCAATTTTAACACATCATCAACAATCCGTCTTTATACAGATCGCaa                                                                                         <  1:3095071/93‑1 (MQ=255)
 tCACTTATTTTCCCCGGAAGCACATTCACTTCACAATTTGTTTACATCAATTTTAACACATCATCAACAATCCGTCTTTATACAGATCGCaaa                                                                                        >  1:3569104/1‑93 (MQ=255)
  cACTTATTTTCCCCGGAAGCACATTCACTTCACAATTTGTTTACATCAATTTTAACACATCATCAACAATCCGTCTTTATACAGATCGCAAAg                                                                                       >  1:3337177/1‑93 (MQ=255)
  cACTTATTTTCCCCGGAAGCACATTCACTTCACAATTTGTTTACATCAATTTTAACACATCATCAACAATCCGTCTTTATACAGATCGCAAAg                                                                                       <  1:6890667/93‑1 (MQ=255)
   aCTTATTTTCCCCGGAAGCACATTCACTTCACAATTTGTTTACATCAATTTTAACACATCATCAANANNCCGTCTTTATACAGATCGCAAAGa                                                                                      >  2:3330637/1‑93 (MQ=255)
   aCTTATTTTCCCCGGAAGCACATTCACTTCACAATTTGTTTACATCAATTTTAACACATCATCAACAATCCGTCTTTATACAGATCGCAAAGa                                                                                      <  1:3869100/93‑1 (MQ=255)
   aCTTATTTTCCCCGGAAGCACATTCACTTCACAATTTGTTTACATCAATTTTAACACATCATCAACAATCCGTCTTTATACAGATCGCAAAGa                                                                                      <  1:699479/93‑1 (MQ=255)
   aCTTATTTTCCCCGGAAGCACATTCACTTCACAATTTGTTTACATCAATTTTAACACATCATCAACAATCCGTCTTTATACAGATCGCAAAGa                                                                                      >  2:7771714/1‑93 (MQ=255)
    cTTATTTTCCCCGGAAGCACATTCACTTCACAATTTGTTTACATCAATTTTAACACATCATCAACAATCCGTCTTTATACAGATCGCAAAGAt                                                                                     >  1:1659598/1‑93 (MQ=255)
    cTTATTTTCCCCGGAAGCACATTCACTTCACAATTTGTTTACATCAATTTTAACACATCATCAACAATCCGTCTTTATACAGATCGCAAAGAt                                                                                     <  1:4386575/93‑1 (MQ=255)
     ttATTTTCCCCGGAAGCACATTCACTTCACAATTTGTTTACATCAATTTTAACACATCATCAACAATCCGTCTTTATACAGATCGCAAAGAtt                                                                                    <  2:5980574/93‑1 (MQ=255)
      tATTTTCCCCGGAAGCACATTCACTTCACAATTTGTTTACATCAATTTTAACACATCATCAACAATCCGTCTTTATACAGATCGCAAAGATTg                                                                                   >  1:723182/1‑93 (MQ=255)
       tttttCCCCGGAAGCACATTCACTTCACAATTTGTTTACATCAATTTTAACACATCATCAACAATCCGTCTTTATACAGATCGCAAAGATTGa                                                                                  <  1:1113441/92‑1 (MQ=255)
       aTTTTCCCCGGAAGCACATTCACTTCACAATTTGTTTACGTCAATTTTAACACATCATCAACAATCCATCTTTATACAGATCGCAAAGATTGa                                                                                  <  2:114988/93‑1 (MQ=255)
       aTTTTCCCCGGAAGCACATTCACTTCACAATTTGTTTACATCAATTTTAACACATCATCAACAATCCGTCTTTATACAGATCGCAAAGATTGa                                                                                  <  1:6724522/93‑1 (MQ=255)
             cccGGAAGCACATTCACTTCACAATTTGTTTACATCAATTTTAACACATCATCAGCAATCCGTCTTTATACAGATCGCAAAGATTGATGCCTc                                                                            <  1:102002/93‑1 (MQ=255)
             cccGGAAGCACATTCACTTCACAATTTGTTTACATCAATTTTAACACATCATCAACAATCCGTCTTTATACAGATCGCAAAGATTGATGCCTc                                                                            <  2:4251429/93‑1 (MQ=255)
              ccGGAAGCACATTCACTTCACAATTTGTTTACATCAATTTTAACACATCATCAACAATCCGTCTTTATACAGATCGCAAAGATTGATGCCTCg                                                                           >  1:6793053/1‑93 (MQ=255)
                ggAAGCACATTCACTTCACAATTTGTTTACATCAATTTTAACACATCATCAACAATCCGTCTTTATACAGATCGCAAAGATTGATGCCTCGcc                                                                         >  2:6780615/1‑93 (MQ=255)
                   aGCACATTCACTTCACAATTTGTTTACATCAATTTTAACACATAACCAACAATCCGTCTTTATACAGATCGCAAAGATTGATGCCTCGCCTGc                                                                      >  2:2184713/1‑93 (MQ=255)
                      acaTTCACTTCACAATTTGTTTACATCAATTTTAACACATCATCAACAATCCGTCTTTATACAGATCGCAAAGATTGATGCCTCGCCTGCGTg                                                                   <  1:2374779/93‑1 (MQ=255)
                       caTTCACTTCACAATTTGTTTACATCAATTTTAACACATCATCAACAATCCGTCTTTATACAGATCGCAAAGATTGATGCCTCGCCTGCGTgg                                                                  >  2:5281552/1‑93 (MQ=255)
                       caTTCACTTCACAATTTGTTTACATCAATTTTAACACATCATCAACAATCCGTCTTTATACAGATCGCAAAGATTGATGCCTCGCCTGCGTgg                                                                  >  2:3651133/1‑93 (MQ=255)
                        atccacatcaaAATTTGTTTACATCAATTTTAACACATCATCAACAATCCGTCTTAATACAGATCACAAAGATTGATGCCTCGCCTGCGTGGc                                                                 <  2:2492837/90‑1 (MQ=255)
                        aTTCACTTCACAATTTGTTTACATCAATTTTAACACATCATCAACAATCCGTCTTTATACAGATCGCAAAGATTGATGCCTCGCCTGCGTGGc                                                                 <  1:7842075/93‑1 (MQ=255)
                        aTTCACTTCACAATTTGTTTACATCAATTTTAACACATCATCAACAATCCGTCTTTATACAGATCGCAAAGATTGATGCCTCGCCTGCGTGGc                                                                 <  2:5072744/93‑1 (MQ=255)
                        aTTCACTTCACAATTTGTTTACATCAATTTTAACACATCATCAACAATCCGTCTTTATACAGATCGCAAAGATTGATGCCTCGCCTGCGTGGc                                                                 >  2:6383550/1‑93 (MQ=255)
                        aTTCACTTCACAATTTGTTTACATCAATTTTAACACATCATCAACAATCCGTCTTTATACAGATCGCAAAGATTGATGCCTCGCCTGCGTGGc                                                                 >  1:4213566/1‑93 (MQ=255)
                        aTTCACTTCACAATTTGTTTACATCAATTTTAACACATCATCAACAATCCGCCTTTATACAGATCGCAAAGATTGATGCCTCGCCTGCGTGGc                                                                 >  2:121279/1‑93 (MQ=255)
                          tcacttcacAATTTGTTTACATCAATTTTAACACATCATCAACAATCCGTCTTTATACAGATCGCAAAGATTGATGCCTCGCCTGCGTGGCct                                                               <  2:1751491/93‑1 (MQ=255)
                          tcacttcacAATTTGTTTACATCAATTTTAACACATCATCAACAATCCGTCTTTATACAGATCGCAAAGATTGATGCCTCGCCTGCGTGGCct                                                               >  2:5701751/1‑93 (MQ=255)
                          tcacttcacAATTTGTTTACATCAATTTTAACACATCATCAACAATCCGTCTTTATACAGATCGCAAAGATTGATGCCTCGCCTGCGTGGCct                                                               >  1:3417920/1‑93 (MQ=255)
                           tacttcacAATTTGGTTACATCAATTTTAACACATCATCAACAATCCGTCTTTATACAGATCGCAAAGATTGATGCCTCGCCTGCGTGGCctc                                                              <  2:1844484/92‑1 (MQ=255)
                           cacttcacAATTTGTTTACATCAATTTTAACACATCATCAACAATCCGTCTTTATACAGATCGCAAAGATTGATGCCTCGCCTGCGTGGCctc                                                              >  2:6933189/1‑93 (MQ=255)
                           cacttcacAATTTGTTTACATCAATTTTAACACATCATCAACAATCCGTCTTTATACAGATCGCAAAGATTGATGCCTCGCCTGCGTGGCctc                                                              <  1:1006650/93‑1 (MQ=255)
                           cacttcacAATTTGTTTACATCAATTTTAACACATCATCAACAATCCGTCTTTATACAGATCGCAAAGATTGATGCCTCGCCTGCGTGGCctc                                                              <  2:2783561/93‑1 (MQ=255)
                           cacttcacAATTTGTTTACATCAATTTTAACACATCATCAACAATCCGTCTTTATACAGATCGCAAAGATTGATGCCTCGCCTGCGTGGCctc                                                              <  1:4114773/93‑1 (MQ=255)
                             cttcacAATTTGTTTACATCAATTTTAACACATCATCAACAATCCGTCTTTATACAGATCGCAAAGATTGATGCCTCGCCTGCGTGGCCTCTa                                                            <  2:5460030/93‑1 (MQ=255)
                              ttcacAATTTGTTTACATCAATTTTAACACATCATCAACAATCCGTCTTTATACAGATCGCAAAGATTGATGCCTCGCCTGCGTGGCCTCTAt                                                           >  2:1551073/1‑93 (MQ=255)
                              ttcacAATTTGTTTACATCAATTTTAACACATCATCAACAATCCGTCTTTATACAGATCGCAAAGATTGATGCCTCGCCTGCGTGGCCTCTAt                                                           <  2:2328812/93‑1 (MQ=255)
                               tcacAATTTGTTTACATCAATTTTAACACATCATCAACAATCCGTCTTTATACAGATCGCAAAGATTGATGCCTCGCCTGCGTGGCCTCTATg                                                          <  1:5306901/93‑1 (MQ=255)
                               tcacAATTTGTTTACATCAATTTTAACACATCATCAACAATCCGTCTTTATACAGATCGCAAAGATTGATGCCTCGCCTGCGTGGCCTCTATg                                                          <  2:5819492/93‑1 (MQ=255)
                                 acaATTTGTTTACATCAATTTTAACACATCATCAACAATCCGTCTTTATACAGATCGCAAAGATTGATGCCTCGCCTGCGTGGCCTCTATGGc                                                        >  2:1251746/1‑93 (MQ=255)
                                 acaATTTGTTTACATCAATTTTAACACATCATCAACAATCCGTCTTTATACAGATCGCAAAGATTGATGCCTCGCCTGCGTGGCCTCTATGGc                                                        <  1:6526978/93‑1 (MQ=255)
                                 acaATTTGTTTACATCAATTTTAACACATCATCAACAATCCGTCTTTATACAGATCGCAAAGATTGATGCCTCGCCTGCGTGGCCTCTATCGc                                                        >  1:1597404/1‑93 (MQ=255)
                                  caATTTGTTTACATCAATTTTAACACATCATCAACAATCCGTCTTTATACAGATCGCAAAGATTGATGCCTCGCCTGCGTGGCCTCTATGGct                                                       <  1:276420/93‑1 (MQ=255)
                                   aaTTTGTTTACATCAATTTTAACACATCATCAACAATCCGTCTTTATACAGATCGCAAAGATTGATGCCTCGCCTGCGTGGCCTCTATGGctc                                                      <  1:7190812/93‑1 (MQ=255)
                                    aTTTGTTTACATCAATTTTAACACATCATCAACAATCCGTCTTTATACAGATCGCAAAGATTGATGCCTCGCCTGCGTGGCCTCTATGGctct                                                     <  2:3735284/93‑1 (MQ=255)
                                    aTTTGTTTACATCAATTTTAACACATCATCAACAATCCGTCTTTATACAGATCGCAAAGATTGATGCCTCGCCTGCGTGGCCTCTATGGctct                                                     >  2:6040796/1‑93 (MQ=255)
                                      ttGTTTACATCAATTTTAACACATCATCAACAATCCGTCTTTATACAGATCGCAAAGATTGATGCCTCGCCTGCGTGGCCTCTATGGCTCTGa                                                   >  2:1033483/1‑93 (MQ=255)
                                       tGTTTACATCAATTTTAACACATCATCAACAATCCGTCTTTATACAGATCGCAAAGATTGATGCCTCGCCTGCGTGGCCTCTATGGCTCTGAt                                                  >  1:4530367/1‑93 (MQ=255)
                                       tGTTTACATCAATTTTAACACATCATCAACAATCCGTCTTTATACAGATCGCAAAGATTGATGCCTCGCCTGCGTGGCCTCTATGGCTCTGAt                                                  >  1:5640858/1‑93 (MQ=255)
                                        gTTTACATCAATTTTAACACATCATCAACAATCCGTCTTTATACAGATCGCAAAGATTGATGCCTCGCCTGCGTGGCCTCTATGGCTCTGAtt                                                 <  1:4725678/93‑1 (MQ=255)
                                         tttACATCAATTTTAACACATCATCAACAATCCGTCTTTATACAGATCGCAAAGATTGATGCCTCGCCTGCGTGGCCTCTATGGCTCTGAttt                                                >  2:3486787/1‑93 (MQ=255)
                                           tACATCAATTTTAACACATCATCAACAATCCGTCTTTATACAGATCGCAAAGATTGATGCCTCGCCTGCGTGGCCTCTATGGCTCTGATTTaa                                              <  1:2671253/93‑1 (MQ=255)
                                             cATCAATTTTAACACATCATCAACAATCCGTCTTTATACAGATCGCAAAGATTGATGCCTCGCCTGCGTGGCCTCTATGGCTCTGATTTAAGt                                            >  1:2903560/1‑93 (MQ=255)
                                              aTCAATTTTAACACATCATCAACAATCCGTCTTTATACAGATCGCAAAGATTGATGCCTCGCCTGCGTGGCCTCTATGGCTCTGATTTAAGTa                                           <  1:49918/93‑1 (MQ=255)
                                               tCAATTTTAACACATCATCAACAATCCGTCTTTATACAGATCGCAAAGATTGATGCCTCGCCTGCGTGGCCTCTATGGCTCTGATTTAAGTaa                                          >  1:5084913/1‑93 (MQ=255)
                                               tCAATTTTAACACATCATCAACAATCCGTCTTTATACAGATCGCAAAGATTGATGCCTCGCCTGCGTGGCCTCTATGGCTCTGATTTAAGTaa                                          <  2:7090657/93‑1 (MQ=255)
                                               tCAATTTTAACACATCATCAACAATCCGTCTTTATACAGATCGCAAAGATTGATGCCTCGCCTGCGTGGCCTCTATGGCTCTGATTTAAGTaa                                          >  1:4031218/1‑93 (MQ=255)
                                                cAATTTTAACACATCATCAACAATCCGTCTTTATACAGATCGCAAAGATTGATGCCTCGCCTGCGTGGCCTCTATGGCTCTGATTTAAGTAat                                         <  2:5944462/93‑1 (MQ=255)
                                                 aaTTTTAACACATCATCAACAATCCGTCTTTATACAGATCGCAAAGATTGATGCCTCGCCTGCGTGGCCTCTATGGCTCTGATTTAAGTAata                                        >  1:7784907/1‑93 (MQ=255)
                                                 aaTTTTAACACATCATCAACAATCCGTCTTTATACAGATCGCAAAGATTGATGCCTCGCCTGCGTGGCCTCTATGGCTCTGATTTAAGTAata                                        >  2:7860325/1‑93 (MQ=255)
                                                 aaTTTTAACACATCATCAACAATCCGTCTTTATACAGATCGCAAAGATTGATGCCTCGCCTGCGTGGCCTCTATGGCTCTGATTTAAGTAata                                        <  2:2444983/93‑1 (MQ=255)
                                                 aaTTTTAACACATCATCAACAATCCGTCTTTATACAGATCGCAAAGATTGATGCCTCGCCTGCGTGGCCTCTATGGCTCTGATTTAAGTAata                                        <  2:7383757/93‑1 (MQ=255)
                                                 aaTTTTAACACATCATCAACAATCCGTCTTTATACAGATCGCAAAGATTGATGCCTCGCCTGCGTGGCCTCTATGGCTCTGATTTAAGTAata                                        <  1:965268/93‑1 (MQ=255)
                                                  aTTTTAACACATCATCAACAATCCGTCTTTATACAGATCGCAAAGATTGATGCCTCGCCTGCGTGGCCTCTATGGCTCTGATTTAAGTAatat                                       <  1:4460885/93‑1 (MQ=255)
                                                  aTTTTAACACATCATCAACAATCCGTCTTTATACAGATCGCAAAGATTGATGCCTCGCCTGCGTGGCCTCTATGGCTCTGATTTAAGTAatat                                       <  1:1896734/93‑1 (MQ=255)
                                                   ttttAACACATCATCAACAATCCGTCTTTATACAGATCGCAAAGATTGATGCCTCGCCTGCGTGGCCTCTATGGCTCTGATTTAAGTAATATc                                      <  2:2365646/93‑1 (MQ=255)
                                                   ttttAACACATCATCAACAATCCGTCTTTATACAGATCGCAAAGATTGATGCCTCGCCTGCGTGGCCTCTATGGCTCTGATTTAAGTAATATc                                      >  2:4014273/1‑93 (MQ=255)
                                                      tAACACATCATCAACAATCCGTCTTTATACAGATCGCAAAGATTGATGCCTCGCCTGCGTGGCCTCTATGGCTCTGATTTAAGTAATATCTGc                                   >  1:1959499/1‑93 (MQ=255)
                                                      tAACACATCATCAACAATCCGTCTTTATACAGATCGCAAAGATTGATGCCTCGCCTGCGTGGCCTCTATGGCTCTGATTTAAGTAATATCTGc                                   <  2:3575876/93‑1 (MQ=255)
                                                       aaCACATCATCAACAATCCGTCTTTATACAGATCGCAAAGATTGATGCCTCGCCTGCGTGGCCTCTATGGCTCTGATTTAAGTAATATCTGCg                                  <  1:5360629/93‑1 (MQ=255)
                                                          acaTCATCAACAATCCGTCTTTATACAGATCGCAAAGATTGATGCCTCGCCTGCGTGGCCTCTATGGCTCTGATTTAAGTAATATCTGCGGGc                               >  1:2605232/1‑93 (MQ=255)
                                                           catcatCAACAATCCGTCTTTATACAGATCGCAAAGATTGATGCCTCGCCTGCGTGGCCTCTATGGCTCTGATTTGAGTAATATCTGCGGGCg                              >  1:3734060/1‑93 (MQ=255)
                                                           catcatCAACAATCCGTCTTTATACAGATCGCAAAGATTGATGCCTCGCCTGCGTGGCCTCTATGGCTCTGATTTAAGTAATATCTGCGGGCg                              >  1:554367/1‑93 (MQ=255)
                                                            atcatcAACAATCCGTCTTTATACAGATCGCAAAGATTGATGCCTCGCCTGCGTGGCCTCTATGGCTCTGATTTAAGTAATATCTGCGGGCGt                             <  2:2052371/93‑1 (MQ=255)
                                                               atcaACAATCCGTCTTTATACAGATCGCAAAGATTGATGCCTCGCCTGCGTGGCCTCTATGGCTCTGATTTAAGTAATATCTGCGGGCGTGGt                          >  2:824871/1‑93 (MQ=255)
                                                                  aacaaTCCGTCTTTATACAGATCGCAAAGATTGATGCCTCGCCTGCGTGGCCTCTATGGCTCTGATTTAAGTAATATCTGCGGGCGTGGTCAc                       >  1:1116398/1‑93 (MQ=255)
                                                                     aaTCCGTCTTTATACAGATCGCAAAGATTGATGCCTCGCCTGCGTGGCCTCTATGGCTCTGATTTAAGTAATATCTGCGGGCGTGGTCACGtt                    <  2:3238605/93‑1 (MQ=255)
                                                                     aaTCCGTCTTTATACAGATCGCAAAGATTGATGCCTCGCCTGCGTGGCCTCTATGGCTCTGATTTAAGTAATATCTGCGGGCGTGGTCACGtt                    >  1:7295896/1‑93 (MQ=255)
                                                                     aaTCCGTCTTTATACAGATCGCAAAGATTGATGCCTCGCCTGCGTGGCCTCTATGGCTCTGATTTAAGTAATATCTGCGGGCGTGGTCACGtt                    <  1:6535464/93‑1 (MQ=255)
                                                                      aTCCGTCTTTATACAGATCGCAAAGATTGATGCCTCGCCTGCGTGGCCTCTATGGCTCTGATTTAAGTAATATCTGCGGGCGTGGTCACGttt                   <  1:4170226/93‑1 (MQ=255)
                                                                      aTCCGTCTTTATACAGATCGCAAAGATTGATGCCTCGCCTGCGTGGCCTCTATGGCTCTGATTTAAGTAATATCTGCGGGCGTGGTCACGttt                   <  1:4607567/93‑1 (MQ=255)
                                                                       tCCGTCTTTATACAGATCGCAAAGATTGATGCCTCGCCTGCGTGGCCTCTATGGCTCTGATTTAAGTAATATCTGCGGGCGTGGTCACGTTTg                  >  1:2138167/1‑93 (MQ=255)
                                                                           tCTTTATACAGATCGCAAAGATTGATGCCTCGCCTGCGTGGCCTCTATGGCTCTGATTTAAGTAATATCTGCGGGCGTGGTCACGTTTGCggg              >  2:507796/1‑93 (MQ=255)
                                                                             tttATACAGATCGCAAAGATTGATGCCTCGCCTGCGTGGCCTCTATGGCTCTGATTTAAGTAATATCTGCGGGCGTGGTCACGTTTGCGGGGc            <  1:5805431/93‑1 (MQ=255)
                                                                             tttATACAGATCGCAAAGATTGATGCCTCGCCTGCGTGGCCTCTATGGCTCTGATTTAAGTAATATCTGCGGGCGTCGTCACGTTTggggggt            >  2:15735/1‑92 (MQ=255)
                                                                             tttATACAGATCGCAAAGATTGATGCCTCGCCTGCGTGGCCTCTATGGCTCTGATTTAAGTAATATCTGCGGGCGGGGTCACGTTTGCGGGGc            >  1:2489646/1‑93 (MQ=255)
                                                                                ataCAGATCGCAAAGATTGATGCCTCGCCTGCGTGGCCTCTATGGCTCTGATTTAAGTAATATCTGCGGGCGTGGTCACGTTTGCGGGGCtat         >  2:319327/1‑93 (MQ=255)
                                                                                 taCAGATCGCAAAGATTGATGCCTCGCCTGCGTGGCCTCTATGGCTCTGATTTAAGTAATATCTGCGGGCGTGGTCACGTTTGCGGGGCtata        <  1:6103673/93‑1 (MQ=255)
                                                                                 taCAGATCGCAAAGATTGATGCCTCGCCTGCGTGGCCTCTATGGCTCTGATTTAAGTAATATCTGCGGGCGTGGTCACGTTTGCGGGGCtata        <  2:6217297/93‑1 (MQ=255)
                                                                                 taCAGATCGCAAAGATTGATGCCTCGCCTGCGTGGCCTCTATGGCTCTGATTTAAGTAATATCTGCGGGCGTGGTCACGTTTGCGGGGCtata        <  1:910584/93‑1 (MQ=255)
                                                                                   cAGATCGCAAAGATTGATGCCTCGCCTGCGTGGCCTCTATGGCTCTGATTTAAGTAATATCTGCGGGCGTGGTCACGTTTGCGGGGCTATATg      >  2:2521600/1‑93 (MQ=255)
                                                                                    aGATCGCAAAGATTGATGCCTCGCCTGCGTGGCCTCTATGGCTCTGATTTAAGTAATATCTGCGGGCGTGGTCACGTTTGCGGGGCTATATGt     <  2:7493902/93‑1 (MQ=255)
                                                                                     gATCGCAAAGATTGATGCCTCGCCTGCGTGGCCTCTATGGCTCTGATTTAAGTAATATCTGCGGGCGTGGTCACGTTTGCGGGGCTATATGTa    <  1:3328381/93‑1 (MQ=255)
                                                                                      aTCGCAAAGATTGATGCCTCGCCTGCGTGGCCTCTATGGCTCTGATTTAAGTAATATCTGCGGGCGTGGTCACGTTTGCGGGGCTATATGTAc   <  1:6270874/93‑1 (MQ=255)
                                                                                       tCGCAAAGATTGATGCCTCGCCTGCGTGGCCTCTATGGCTCTGATTTAAGTAATATCTGCGGGCGTGGTCACGTTTGCGGGGCTATATGTAcc  <  1:6840166/93‑1 (MQ=255)
                                                                                       tCGCAAAGATTGATGCCTCGCCTGCGTGGCCTCTATGGCTCTGATTTAAGTAATATCTGCGGGCGTGGTCACGTTTGCGCGGCTATATGCAcc  >  1:7930569/1‑93 (MQ=255)
                                                                                          |                                                                                         
GTCACTTATTTTCCCCGGAAGCACATTCACTTCACAATTTGTTTACATCAATTTTAACACATCATCAACAATCCGTCTTTATACAGATCGTAAAGATTGATGCCTCGCCTGCGTGGCCTCTATGGCTCTGATTTAAGTAATATCTGCGGGCGTGGTCACGTTTGCGGGGCTATATGTACC  >  NC_000913/2276253‑2276432

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

BRESEQ :: bam2aln output
GAAGTCACTTATTTTCCCCGGAAGCACATTCACTTCACAATTTGTTTACATCAATTTTAACACATCATCAACAATCCGTCTTTATACAGATCGTAAAGATTGATGCCTCGCCTGCGTGGCCTCTATGGCTCTGATTTAAGTAATATCTGCGGGCGTGGTCACGTTTGCGGGGCTATATGTACCCGTT  >  NC_000913/2276250‑2276436
                                                                                             |                                                                                             
GAAGTCACTTATTTTCCCCGGAAGCACATTCACTTCACAATTTGTTTACATCAATTTTAACACATCATCAACAATCCGTCTTTATACAGATCGC                                                                                               >  SRR4302543.4828753/1‑94 (MQ=60)
 AAGTCACTTATTTTCCCCGGAAGCACATTCACTTCACAATTTGTTTGCATCAATTTTAACACATCATCAACAATCCGTCTTTATACAGATCGCA                                                                                              <  SRR4302543.2810527/94‑1 (MQ=60)
 AAGTCACTTATTTTCCCCGGAAGCACATTCACTTCACAATTTGTTTACATCAATTTTAACACATCATCAACAATCCGTCTTTATACAGATCGCA                                                                                              <  SRR4302543.3993074/94‑1 (MQ=60)
 AAGTCACTTATTTTCCCCGGAAGCACATTCACTTCACAATTTGTTTACATCAATTTTAACACATCATCAACAATCCGTCTTTATACAGATCGCA                                                                                              >  SRR4302543.5622622/1‑94 (MQ=60)
  AGTCACTTATTTTCCCCGGAAGCACATTCACTTCACAATTTGTTTACATCAATTTTAACACATCATCAACAATCCGTCTTTATACAGATCGCAA                                                                                             <  SRR4302543.7491518/94‑1 (MQ=60)
  AGTCACTTATTTTCCCCGGAAGCACATTCACTTCACAATTTGTTTACATCAATTTTAACACATCATCAACAATCCGTCTTTATACAGATCGCAA                                                                                             <  SRR4302543.5741802/94‑1 (MQ=60)
  AGTCACTTATTTTCCCCGGAAGCACATTCACTTCACAATTTGTTTACATCAATTTTAACACATCATCAACAATCCGTCTTTATACAGATCGCAA                                                                                             >  SRR4302543.4830989/1‑94 (MQ=60)
   GTCACTTATTTTCCCCGGAAGCACATTCACTTCACAATTTGTTTACATCAATTTTAACACATCATCAACAATCCGTCTTTATACAGATCGCAAA                                                                                            <  SRR4302543.3122910/94‑1 (MQ=60)
   GTCACTTATTTTCCCCGGAAGCACATTCACTTCACAATTTGTTTACATCAATTTTAACACATCATCAACAATCCGTCTTTATACAGATCGCAAA                                                                                            >  SRR4302543.3600664/1‑94 (MQ=60)
    TCACTTATTTTCCCCGGAAGCACATTCACTTCACAATTTGTTTACATCAATTTTAACACATCATCAACAATCCGTCTTTATACAGATCGCAAAG                                                                                           >  SRR4302543.3367242/1‑94 (MQ=60)
    TCACTTATTTTCCCCGGAAGCACATTCACTTCACAATTTGTTTACATCAATTTTAACACATCATCAACAATCCGTCTTTATACAGATCGCAAAG                                                                                           <  SRR4302543.7512126/94‑1 (MQ=60)
     CACTTATTTTCCCCGGAAGCACATTCACTTCACAATTTGTTTACATCAATTTTAACACATCATCAACAATCCGTCTTTATACAGATCGCAAAGA                                                                                          <  SRR4302543.6955458/94‑1 (MQ=60)
      ACTTATTTTCCCCGGAAGCACATTCACTTCACAATTTGTTTACATCAATTTTAACACATCATCAACAATCCGTCTTTATACAGATCGCAAAGAT                                                                                         <  SRR4302543.2860149/94‑1 (MQ=60)
      ACTTATTTTCCCCGGAAGCACATTCACTTCACAATTTGTTTACATCAATTTTAACACATCATCAACAATCCGTCTTTATACAGATCGCAAAGAT                                                                                         <  SRR4302543.705877/94‑1 (MQ=60)
      ACTTATTTTCCCCGGAAGCACATTCACTTCACAATTTGTTTACATCAATTTTAACACATCATCAACAATCCGTCTTTATACAGATCGCAAAGAT                                                                                         <  SRR4302543.4624487/94‑1 (MQ=60)
      ACTTATTTTCCCCGGAAGCACATTCACTTCACAATTTGTTTACATCAATTTTAACACATCATCAACAATCCGTCTTTATACAGATCGCAAAGAT                                                                                         >  SRR4302543.1674461/1‑94 (MQ=60)
      ACTTATTTTCCCCGGAAGCACATTCACTTCACAATTTGTTTACATCAATTTTAACACATCATCAACAATCCGTCTTTATACAGATCGCAAAGAT                                                                                         <  SRR4302543.3903267/94‑1 (MQ=60)
       CTTATTTTCCCCGGAAGCACATTCACTTCACAATTTGTTTACATCAATTTTAACACATCATCAACAATCCGTCTTTATACAGATCGCAAAGATT                                                                                        <  SRR4302543.4426345/94‑1 (MQ=60)
        TTATTTTCCCCGGAAGCACATTCACTTCACAATTTGTTTACATCAATTTTAACACATCATCAACAATCCGTCTTTATACAGATCGCAAAGATTG                                                                                       <  SRR4302543.4079460/94‑1 (MQ=60)
        TTATTTTCCCCGGAAGCACATTCACTTCACAATTTGTTTACATCAATTTTAACACATCATCAACAATCCGTCTTTATACAGATCGCAAAGATTG                                                                                       >  SRR4302543.729698/1‑94 (MQ=60)
        TTATTTTCCCCGGAAGCACATTCACTTCACAATTTGTTTACATCAATTTTAACACATCATCAACAATCCGTCTTTATACAGATCGCAAAGATTG                                                                                       <  SRR4302543.5316564/94‑1 (MQ=60)
        TTATTTTCCCCGGAAGCACATTCACTTCACAATTTGTTTACATCAATTTTAACACATCATCAACAATCCGTCTTTATACAGATCGCAAAGATTG                                                                                       <  SRR4302543.7869549/94‑1 (MQ=60)
          TTTTTCCCCGGAAGCACATTCACTTCACAATTTGTTTACATCAATTTTAACACATCATCAACAATCCGTCTTTATACAGATCGCAAAGATTGAT                                                                                     <  SRR4302543.1123510/94‑1 (MQ=60)
          ATTTTCCCCGGAAGCACATTCACTTCACAATTTGTTTACATCAATTTTAACACATCATCAACAATCCGTCTTTATACAGATCGCAAAGATTGAT                                                                                     <  SRR4302543.3266697/94‑1 (MQ=60)
          ATTTTCCCCGGAAGCACATTCACTTCACAATTTGTTTACATCAATTTTAACACATCATCAACAATCCGTCTTTATACAGATCGCAAAGATTGAT                                                                                     >  SRR4302543.7822936/1‑94 (MQ=60)
          ATTTTCCCCGGAAGCACATTCACTTCACAATTTGTTTACATCAATTTTAACACATCATCAACAATCCGTCTTTATACAGATCGCAAAGATTGAT                                                                                     >  SRR4302543.4163856/1‑94 (MQ=60)
          ATTTTCCCCGGAAGCACATTCACTTCACAATTTGTTTACATCAATTTTAACACATCATCAACAATCCGTCTTTATACAGATCGCAAAGATTGAT                                                                                     <  SRR4302543.6788059/94‑1 (MQ=60)
          ATTTTCCCCGGAAGCACATTCACTTCACAATTTGTTTACATCAATTTTAACACATCATCAACAATCCGTCTTTATACAGATCGCAAAGATTGAT                                                                                     <  SRR4302543.2938142/94‑1 (MQ=60)
           TTTTCCCCGGAAGCACATTCACTTCACAATTTGTTTACATCAATTTTAACACATCATCAACAATCCGTCTTTATACAGATCGCAAAGATTGATG                                                                                    <  SRR4302543.2420182/94‑1 (MQ=60)
              TCCCCGGAAGTACATTCACTTCACAATTTGTTTACATCAATTTTAACACATCATCAACAATCCGTCTTTATACAGATCGCAAAGATTGATGCCT                                                                                 <  SRR4302543.6931141/94‑1 (MQ=60)
               CCCCGGAAGCACATTCACTTCACAATTTGTTTACATCAATTTTAACACATCATCAACAATCCGTCTTTATACAGATCGCAAAGATTGATGCCTC                                                                                <  SRR4302543.4215747/94‑1 (MQ=60)
               CCCCGGAAGCACATTCACTTCACAATTTGTTTACATCAATTTTAACACATCATCAACAATCCGTCTTTATACAGATCGCAAAGATTGATGCCTC                                                                                <  SRR4302543.4215746/94‑1 (MQ=60)
               CCCCGGAAGCACATTCACTTCACAATTTGTTTACATCAATTTTAACACATCATCAACAATCCGTCTTTATACAGATCGCAAAGATTGATGCCTC                                                                                <  SRR4302543.929960/94‑1 (MQ=60)
                CCCGGAAGCACATTCACTTCACAATTTGTTTACATCAATTTTAACACATCATCAGCAATCCGTCTTTATACAGATCGCAAAGATTGATGCCTCG                                                                               <  SRR4302543.102944/94‑1 (MQ=60)
                CCCGGAAGCACATTCACTTCACAATTTGTTTACATCAATTTTAACACATCATCAACAATCCGTCTTTATACAGATCGCAAAGATTGATGCCTCG                                                                               >  SRR4302543.6857201/1‑94 (MQ=60)
                 CCGGAAGCACATTCACTTCACAATTTGTTTACATCAATTTTAACACATCATCAACAATCCGTCTTTATACAGATCGCAAAGATTGATGCCTCGC                                                                              >  SRR4302543.2701446/1‑94 (MQ=60)
                   GGAAGCACATTCACTTCACAATTTGTTTACATCAATTTTAACACATCATCAACAATCCGTCTTTATACAGATCGCAAAGATTGATGCCTCGCCT                                                                            >  SRR4302543.6906854/1‑94 (MQ=60)
                     AAGCACATTCACTTCACAATTTGTTTACATCAATTTTAACACATCATCAACAATCCGTCTTTATACAGATCGCAAAGATTGATGCCTCGCCTGC                                                                          >  SRR4302543.3844051/1‑94 (MQ=60)
                      AGCACATTCACTTCACAATTTGTTTACATCAATTTTAACACATCATCAACAATCCGTCTTTATACAGATCGCAAAGATTGATGCCTCGCCTGCG                                                                         <  SRR4302543.264937/94‑1 (MQ=60)
                      AGCACATTCACTTCACAATTTGTTTACATCAATTTTAACACATCATCAACAATCCGTCTTTATACAGATCGCAAAGATTGATGCCTCGCCTGCG                                                                         >  SRR4302543.4108213/1‑94 (MQ=60)
                         ACATTCACTTCACAATTTGTTTACATCAATTTTAACACATCATCAACAATCCGTCTTTATACAGATCGCAAAGATTGATGCCTCGCCTGCGTGG                                                                      <  SRR4302543.7333158/94‑1 (MQ=60)
                         ACATTCACTTCACAATTTGTTTACATCAATTTTAACACATCATCAACAATCCGTCTTTATACAGATCGCAAAGATTGATGCCTCGCCTGCGTGG                                                                      <  SRR4302543.2396293/94‑1 (MQ=60)
                          CATTCACTTCACAATTTGTTTACATCAATTTTAACACATCATCAACAATCCGTCTTTATACAGATCGCAAAGATTGATGCCTCGCCTGCGTGGC                                                                     >  SRR4302543.4251776/1‑94 (MQ=60)
                           ATTCACTTCACAATTTGTTTACATCAATTTTAACACATCGTCAACAATCCGTCTTGATACAGATCGCAAAGATTGATGCCTCGCCTGCGTGGCC                                                                    <  SRR4302543.4817204/94‑1 (MQ=60)
                           ATTCACTTCACAATTTGTTTACATCAATTTTAACACATCATCAACAATCCGTCTTTATACAGATCGCAAAGATTGATGCCTCGCCTGCGTGGCC                                                                    <  SRR4302543.7915998/94‑1 (MQ=60)
                           ATTCACTTCACAATTTGTTTACATCAATTTTAACACATCATCAACAATCCGTCTTTATACAGATCGCAAAGATTGATGCCTCGCCTGCGTGGCC                                                                    <  SRR4302543.1705684/94‑1 (MQ=60)
                            TTCACTTCACAATTTGTTTACATCAATTTTAACACATCATCAACAATCCGTCTTTATACAGATCGCAAAGATTGATGCCTCGCCTGCGTGGCCT                                                                   >  SRR4302543.5669503/1‑94 (MQ=60)
                            TTCACTTCACAATTTGTTTACATCAATTTTAACACATCATCAACAATCCGTCTTTATACAGATCGCAAAGATTGATGCCTCGCCTGCGTGGCCT                                                                   >  SRR4302543.3422272/1‑94 (MQ=60)
                            TTCACTTCACAATTTGTTTACATCAATTTTAACACATCATCAACAATCCGTCTTTATACAGATCGCAAAGATTGATGCCTCGCCTGCGTGGCCT                                                                   >  SRR4302543.3448512/1‑94 (MQ=60)
                             TCACTTCACAATTTGTTTACATCAATTTTAACACATCATCAACAATCCGTCTTTATACAGATCGCAAAGATTGATGCCTCGCCTGCGTGGCCTC                                                                  <  SRR4302543.1963413/94‑1 (MQ=60)
                              CACTTCACAATTTGTTTACATCAATTTTAACACATCATCAACAATCCGTCTTTATACAGATCGCAAAGATTGATGCCTCGCCTGCGTGGCCTCT                                                                 <  SRR4302543.4151838/94‑1 (MQ=60)
                              CACTTCACAATTTGTTTACATCAATTTTAACACATCATCAACAATCCGTCTTTATACAGATCGCAAAGATTGATGCCTCGCCTGCGTGGCCTCT                                                                 <  SRR4302543.1015555/94‑1 (MQ=60)
                              CACTTCACAATTTGTTTACATCAATTTTAACACATCATCAACAATCCGTCTTTATACAGATCGCAAAGATTGATGCCTCGCCTGCGTGGCCTCT                                                                 <  SRR4302543.793928/94‑1 (MQ=60)
                              CACTTCACAATTTGTTTACATCAATTTTAACACATCATCAACAATCCGTCTTTATACAGATCGCAAAGATTGATGCCTCGCCTGCGTGGCCTCT                                                                 <  SRR4302543.732216/94‑1 (MQ=60)
                               ACTTCACAATTTGTTTACATCAATTTTAACACATCATCAACAATCCGTCTTTATACAGATCGCAAAGATTGATGCCTCGCCTGCGTGGCCTCTA                                                                <  SRR4302543.3739355/94‑1 (MQ=60)
                               ACTTCACAATTTGTTTACATCAATTTTAACACATCATCAACAATCCGTCTTTATACAGATCGCAAAGATTGATGCCTCGCCTGCGTGGCCTCTA                                                                >  SRR4302543.5722378/1‑94 (MQ=60)
                               ACTTCACAATTTGTTTACATCAATTTTAACACATCATCAACAATCCGTCTTTATACAGATCGCAAAGATTGATGCCTCGCCTGCGTGGCCTCTA                                                                <  SRR4302543.6267817/94‑1 (MQ=60)
                                 TTCACAATTTGTTTACATCAATTTTAACACATCATCAACAATCCGTCTTTATACAGATCGCAAAGATTGATGCCTCGCCTGCGTGGCCTCTATG                                                              >  SRR4302543.1612366/1‑94 (MQ=60)
                                  TCACAATTTGTTTACATCAATTTTAACACATCATCAACAATCCGTCTTTATACAGATCGCAAAGATTGATGCCTCGCCTGCGTGGCCTCTATGG                                                             <  SRR4302543.5354825/94‑1 (MQ=60)
                                  TCACAATTTGTTTACATCAATTTTAACACATCATCAACAATCCGTCTTTATACAGATCGCAAAGATTGATGCCTCGCCTGCGTGGCCTCTATGG                                                             <  SRR4302543.6859407/94‑1 (MQ=60)
                                  TCACAATTTGTTTACATCAATTTTAACACATCATCAACAATCCGTCTTTATACAGATCGCAAAGATTGATGCCTCGCCTGCGTGGCCTCTATGG                                                             <  SRR4302543.6028310/94‑1 (MQ=60)
                                   CACAATTTGTTTACATCAATTTTAACACATCATCAACAATCCGTCTTTATACAGATCGCAAAGATTGATGCCTCGCCTGCGTGGCCTCTATCGC                                                            >  SRR4302543.1611657/1‑94 (MQ=60)
                                    ACAATTTGTTTACATCAATTTTAACACATCATCAACAATCCGTCTTTATACAGATCGCAAAGATTGATGCCTCGCCTGCGTGGCCTCTATGGCT                                                           <  SRR4302543.6588438/94‑1 (MQ=60)
                                     CAATTTGTTTACATCAATTTTAACACATCATCAACAATCCGTCTTTATACAGATCGCAAAGATTGATGCCTCGCCTGCGTGGCCTCTATGGCTC                                                          >  SRR4302543.2379054/1‑94 (MQ=60)
                                     CAATTTGTTTACATCAATTTTAACACATCATCAACAATCCGTCTTTATACAGATCGCAAAGATTGATGCCTCGCCTGCGTGGCCTCTATGGCTC                                                          <  SRR4302543.278860/94‑1 (MQ=60)
                                      AATTTGTTTACATCAATTTTAACACATCATCAACAATCCGTCTTTATACAGATCGCAAAGATTGATGCCTCGCCTGCGTGGCCTCTATGGCTCT                                                         <  SRR4302543.7289836/94‑1 (MQ=60)
                                      AATTTGTTTACATCAATTTTAACACATCATCAACAATCCGTCTTTATACAGATCGCAAAGATTGATGCCTCGCCTGCGTGGCCTCTATGGCTCT                                                         <  SRR4302543.7260555/94‑1 (MQ=60)
                                       ATTTGTTTACATCAATTTTAACACATCATCAACAATCCGTCTTTATACAGATCGCAAAGATTGATGCCTCGCCTGCGTGGCCTCTATGGCTCTG                                                        >  SRR4302543.2310704/1‑94 (MQ=60)
                                         TTGTTTACATCAATTTTAACACATCATCAACAATCCGTCTTTATACAGATCGCAAAGATTGATGCCTCGCCTGCGTGGCCTCTATGGCTCTGAT                                                      >  SRR4302543.5692280/1‑94 (MQ=60)
                                         TTGTTTACATCAATTTTAACACATCATCAACAATCCGTCTTTATACAGATCGCAAAGATTGATGCCTCGCCTGCGTGGCCTCTATGGCTCTGAT                                                      >  SRR4302543.5692281/1‑94 (MQ=60)
                                         TTGTTTACATCAATTTTAACACATCATCAACAATCCGTCTTTATACAGATCGCAAAGATTGATGCCTCGCCTGCGTGGCCTCTATGGCTCTGAT                                                      >  SRR4302543.4571597/1‑94 (MQ=60)
                                          TGTTTACATCAATTTTAACACATCATCAACAATCCGTCTTTATACAGATCGCAAAGATTGATGCCTCGCCTGCGTGGCCTCTATGGCTCTGATT                                                     >  SRR4302543.7159672/1‑94 (MQ=60)
                                           GTTTACATCAATTTTAACACATCATCAACAATCCGTCTTTATACAGATCGCAAAGATTGATGCCTCGCCTGCGTGGCCTCTATGGCTCTGATTT                                                    >  SRR4302543.1060178/1‑94 (MQ=60)
                                           GTTTACATCAATTTTAACACATCATCAACAATCCGTCTTTATACAGATCGCAAAGATTGATGCCTCGCCTGCGTGGCCTCTATGGCTCTGATTT                                                    <  SRR4302543.4768857/94‑1 (MQ=60)
                                            TTTACATCAATTTTAACACATCATCAACAATCCGTCTTTATACAGATCGCAAAGATTGATGCCTCGCCTGCGTGGCCTCTATGGCTCTGATTTA                                                   >  SRR4302543.2522319/1‑94 (MQ=60)
                                             TTACATCAATTTTAACACATCATCAGCAATCCGTCTTTATACAGATCGCAAAGATTGATGCCTCGCCTGCGTGGCCTCTATGGCTCTGATTTAA                                                  <  SRR4302543.4540292/94‑1 (MQ=60)
                                             TTACATCAATTTTAACACATCATCAACAATCCGTCTTTATACAGATCGCAAAGATTGATGCCTCGCCTGCGTGGCCTCTATGGCTCTGATTTAA                                                  <  SRR4302543.6349016/94‑1 (MQ=60)
                                              TACATCAATTTTAACACATCATCAACAATCCGTCTTTATACAGATCGCAAAGATTGATGCCTCGCCTGCGTGGCCTCTATGGCTCTGATTTAAG                                                 <  SRR4302543.2695477/94‑1 (MQ=60)
                                               ACATCAATTTTAACACATCATCAACAATCCGTCTTTATACAGATCGCAAAGATTGATGCCTCGCCTGCGTGGCCTCTATGGCTCTGATTTAAGT                                                <  SRR4302543.5247537/94‑1 (MQ=60)
                                               ACATCAATTTTAACACATCATCAACAATCCGTCTTTATACAGATCGCAAAGATTGATGCCTCGCCTGCGTGGCCTCTATGGCTCTGATTTAAGT                                                >  SRR4302543.2929957/1‑94 (MQ=60)
                                                 ATCAATTTTAACACATCATCAACAATCCGTCTTTATACAGATCGCAAAGATTGATGCCTCGCCTGCGTGGCCTCTATGGCTCTGATTTAAGTAA                                              >  SRR4302543.2562882/1‑94 (MQ=60)
                                                 ATCAATTTTAACACATCATCAACAATCCGTCTTTATACAGATCGCAAAGATTGATGCCTCGCCTGCGTGGCCTCTATGGCTCTGATTTAAGTAA                                              >  SRR4302543.5131014/1‑94 (MQ=60)
                                                 ATCAATTTTAACACATCATCAACAATCCGTCTTTATACAGATCGCAAAGATTGATGCCTCGCCTGCGTGGCCTCTATGGCTCTGATTTAAGTAA                                              <  SRR4302543.50367/94‑1 (MQ=60)
                                                 ATCAATTTTAACACATCATCAACAATCCGTCTTTATACAGATCGCAAAGATTGATGCCTCGCCTGCGTGGCCTCTATGGCTCTGATTTAAGTAA                                              <  SRR4302543.50366/94‑1 (MQ=60)
                                                 ATCAATTTTAACACATCATCAACAATCCGTCTTTATACAGATCGCAAAGATTGATGCCTCGCCTGCGTGGCCTCTATGGCTCTGATTTAAGTAA                                              <  SRR4302543.1350998/94‑1 (MQ=60)
                                                 ATCAATTTTAACACATCATCAACAATCCGTCTTTATACAGATCGCAAAGATTGATGCCTCGCCTGCGTGGCCTCTATGGCTCTGATTTAAGTAA                                              >  SRR4302543.4067260/1‑94 (MQ=60)
                                                 ATCAATTTTAACACATCATCAACAATCCGTCTTTATACAGATCGCAAAGATTGATGCCTCGCCTGCGTGGCCTCTATGGCTCTGATTTAAGTAA                                              <  SRR4302543.4757630/94‑1 (MQ=60)
                                                  TCAATTTTAACACATCATCAACAATCCGTCTTTATACAGATCGCAAAGATTGATGCCTCGCCTGCGTGGCCTCTATGGCTCTGATTTAAGTAAT                                             <  SRR4302543.4752793/94‑1 (MQ=60)
                                                   CAATTTTAACACATCATCAACAATCCGTCTTTATACAGATCGCAAAGATTGATGCCTCGCCTGCGTGGCCTCTATGGCTCTGATTTAAGTAATA                                            >  SRR4302543.7858299/1‑94 (MQ=60)
                                                    AATTTTAACACATCATCAACAATCCGTCTTTATACAGATCGCAAAGATTGATGCCTCGCCTGCGTGGCCTCTATGGCTCTGATTTAAGTAATAT                                           <  SRR4302543.973738/94‑1 (MQ=60)
                                                    AATTTTAACACATCATCAACAATCCGTCTTTATACAGATCGCAAAGATTGATGCCTCGCCTGCGTGGCCTCTATGGCTCTGATTTAAGTAATAT                                           <  SRR4302543.4428900/94‑1 (MQ=60)
                                                     ATTTTAACACATCATCAACAATCCGTCTTTATACAGATCGCAAAGATTGATGCCTCGCCTGCGTGGCCTCTATGGCTCTGATTTAAGTAATATC                                          <  SRR4302543.4501306/94‑1 (MQ=60)
                                                     ATTTTAACACATCATCAACAATCCGTCTTTATACAGATCGCAAAGATTGATGCCTCGCCTGCGTGGCCTCTATGGCTCTGATTTAAGTAATATC                                          <  SRR4302543.1913797/94‑1 (MQ=60)
                                                      TTTTAACACATCATCAACAATCCGTCTTTATACAGATCGCAAAGATTGATGCCTCGCCTGCGTGGCCTCTATGGCTCTGATTTAAGTAATATCT                                         <  SRR4302543.6780618/94‑1 (MQ=60)
                                                      TTTTAACACATCATCAACAATCCGTCTTTATACAGATCGCAAAGATTGATGCCTCGCCTGCGTGGCCTCTATGGCTCTGATTTAAGTAATATCT                                         <  SRR4302543.989284/94‑1 (MQ=60)
                                                      TTTTAACACATCATCAACAATCCGTCTTTATACAGATCGCAAAGATTGATGCCTCGCCTGCGTGGCCTCTATGGCTCTGATTTAAGTAATATCT                                         <  SRR4302543.1279677/94‑1 (MQ=60)
                                                       TTTAACACATCATCAACAATCCGTCTTTATACAGATCGCAAAGATTGATGCCTCGCCTGCGTGGCCTCTATGGCTCTGATTTAAGTAATATCTG                                        >  SRR4302543.336455/1‑94 (MQ=60)
                                                        TTAACACATCATCAACAATCCGTCTTTATACAGATCGCAAAGATTGATGCCTCGCCTGCGTGGCCTCTATGGCTCTGATTTAAGTAATATCTGC                                       >  SRR4302543.1977075/1‑94 (MQ=60)
                                                         TAACACATCATCAACAATCCGTCTTTATACAGATCGCAAAGATTGATGCCTCGCCTGCGTGGCCTCTATGGCTCTGATTTAAGTAATATCTGCG                                      <  SRR4302543.1888129/94‑1 (MQ=60)
                                                          AACACATCCTCAACAATCCGTCTTTATACAGATCGCAAAGATTGATGCCTCGCCTGCGTTGCCTCTATGGCTCTGATTTAAGTAATATCTGCGG                                     >  SRR4302543.1085309/1‑94 (MQ=60)
                                                          AACACATCATCAACAATCCGTCTTTATACAGATCGCAAAGATTGATGCCTCGCCTGCGTGGCCTCTATGGCTCTGATTTAAGTAATATCTGCGG                                     <  SRR4302543.5409143/94‑1 (MQ=60)
                                                          AACACATCATCAACAATCCGTCTTTATACAGATCGCAAAGATTGATGCCTCGCCTGCGTGGCCTCTATGGCTCTGATTTAAGTAATATCTGCGG                                     <  SRR4302543.2010326/94‑1 (MQ=60)
                                                          AACACATCATCAACAATCCGTCTTTATACAGATCGCAAAGATTGATGCCTCGCCTGCGTGGCCTCTATGGCTCTGATTTAAGTAATATCTGCGG                                     >  SRR4302543.6137648/1‑94 (MQ=60)
                                                           ACACATCATCAACAATCCGTCTTTATACAGATCGCAAAGATTGATGCCTCGCCTGCGTGGCCTCTATGGCTCTGATTTAAGTAATATCTGCGGG                                    <  SRR4302543.4960280/94‑1 (MQ=60)
                                                            CACATCATCAACAATCCGTCTTTATACAGATCGCAAAGATTGATGCCTCGCCTGCGTGGCCTCTATGGCTCTGATTTAAGTAATATCTGCGGGC                                   >  SRR4302543.2628895/1‑94 (MQ=60)
                                                             ACATCATCAACAATCCGTCTTTATACAGATCGCAAAGATTGATGCCTCGCCTGCGTGGCCTCTATGGCTCTGATTTGAGTAATATCTGCGGGCG                                  >  SRR4302543.3766903/1‑94 (MQ=60)
                                                             ACATCATCAACAATCCGTCTTTATACAGATCGCAAAGATTGATGCCTCGCCTGCGTGGCCTCTATGGCTCTGATTTAAGTAATATCTGCGGGCG                                  >  SRR4302543.559458/1‑94 (MQ=60)
                                                               ATCATCAACAATCCGTCTTTATACAGATCGCAAAGATTGATGCCTCGCCTGCGTGGCCTCTATGGCTCTGATTTAAGTAATATCTGCGGGCGTG                                <  SRR4302543.6815800/94‑1 (MQ=60)
                                                                TCATCAACAATCCGTCTTTATACAGATCGCAAAGATTGATGCCTCGCCTGCGTGGCCTCTATGGCTCTGATTTAAGTAATATCTGCGGGCGTGG                               <  SRR4302543.5524130/94‑1 (MQ=60)
                                                                TCATCAACAATCCGTCTTTATACAGATCGCAAAGATTGATGCCTCGCCTGCGTGGCCTCTATGGCTCTGATTTAAGTAATATCTGCGGGCGTGG                               <  SRR4302543.8010806/94‑1 (MQ=60)
                                                                 CATCAACAATCCGTCTTTATACAGATCGCAAAGATTGATGCCTCGCCTGCGTGGCCTCTATGGCTCTGATTTAAGTAATATCTGCGGGCGTGGT                              >  SRR4302543.3582893/1‑94 (MQ=60)
                                                                 CATCAACAATCCGTCTTTATACAGATCGCAAAGATTGATGCCTCGCCTGCGTGGCCTCTATGGCTCTGATTTAAGTAATATCTGCGGGCGTGGT                              <  SRR4302543.5552449/94‑1 (MQ=60)
                                                                   TCAACAATCCGTCTTTATACAGATCGCAAAGATTGATGCCTCGCCTGCGTGGCCTCTATGGCTCTGATTTAAGTAATATCTGCGGGCGTGGTCA                            >  SRR4302543.4590362/1‑94 (MQ=60)
                                                                   TCAACAATCCGTCTTTATACAGATCGCAAAGATTGATGCCTCGCCTGCGTGGCCTCTATGGCTCTGATTTAAGTAATATCTGCGGGCGTGGTCA                            <  SRR4302543.4282989/94‑1 (MQ=60)
                                                                    CAACAATCCGTCTTTATACAGATCGCAAAGATTGATGCCTCGCCTGCGTGGCCTCTATGGCTCTGATTTAAGTAATATCTGCGGGCGTGGTCAC                           <  SRR4302543.6507338/94‑1 (MQ=60)
                                                                    CAACAATCCGTCTTTATACAGATCGCAAAGATTGATGCCTCGCCTGCGTGGCCTCTATGGCTCTGATTTAAGTAATATCTGCGGGCGTGGTCAC                           <  SRR4302543.2773597/94‑1 (MQ=60)
                                                                    CAACAATCCGTCTTTATACAGATCGCAAAGATTGATGCCTCGCCTGCGTGGCCTCTATGGCTCTGATTTAAGTAATATCTGCGGGCGTGGTCAC                           >  SRR4302543.1126503/1‑94 (MQ=60)
                                                                    CAACAATCCGTCTTTATACAGATCGCAAAGATTGATGCCTCGCCTGCGTGGCCTCTATGGCTCTGATTTAAGTAATATCTGCGGGCGTGGTCAC                           <  SRR4302543.3638680/94‑1 (MQ=60)
                                                                       CAATCCGTCTTTATACAGATCGCAAAGATTGATGCCTCGCCTGCGTGGCCTCTATGGCTCTGATTTAAGTAATATCTGCGGGCGTGGTCACGTT                        <  SRR4302543.1125451/94‑1 (MQ=60)
                                                                       CAATCCGTCTTTATACAGATCGCAAAGATTGATGCCTCGCCTGCGTGGCCTCTATGGCTCTGATTTAAGTAATATCTGCGGGCGTGGTCACGTT                        >  SRR4302543.7366292/1‑94 (MQ=60)
                                                                       CAATCCGTCTTTATACAGATCGCAAAGATTGATGCCTCGCCTGAGTGGCCTCTATGGCTCTGATTTAAGTAATATCTGCGGGCGgggtacagtt                        >  SRR4302543.6859080/1‑84 (MQ=60)
                                                                        AATCCGTCTTTATACAGATCGCAAAGATTGATGCCTCGCCTGCGTGGCCTCTATGGCTCTGATTTAAGTAATATCTGCGGGCGTGGTCACGTTT                       <  SRR4302543.1026558/94‑1 (MQ=60)
                                                                        AATCCGTCTTTATACAGATCGCAAAGATTGATGCCTCGCCTGCGTGGCCTCTATGGCTCTGATTTAAGTAATATCTGCGGGCGTGGTCACGTTT                       <  SRR4302543.6596983/94‑1 (MQ=60)
                                                                        AATCCGTCTTTATACAGATCGCAAAGATTGATGCCTCGCCTGCGTGGCCTCTATGGCTCTGATTTAAGTAATATCTGCGGGCGTGGTCACGTTT                       >  SRR4302543.3389520/1‑94 (MQ=60)
                                                                         ATCCGTCTTTATACAGATCGCAAAGATTGATGCCTCGCCTGCGTGGCCTCTATGGCTCTGATTTAAGTAATATCTGCGGGCGTGGTCACGTTTG                      >  SRR4302543.4452017/1‑94 (MQ=60)
                                                                         ATCCGTCTTTATACAGATCGCAAAGATTGATGCCTCGCCTGCGTGGCCTCTATGGCTCTGATTTAAGTAATATCTGCGGGCGTGGTCACGTTTG                      >  SRR4302543.2157305/1‑94 (MQ=60)
                                                                         ATCCGTCTTTATACAGATCGCAAAGATTGATGCCTCGCCTGCGTGGCCTCTATGGCTCTGATTTAAGTAATATCTGCGGGCGTGGTCACGTTTG                      <  SRR4302543.4207986/94‑1 (MQ=60)
                                                                         ATCCGTCTTTATACAGATCGCAAAGATTGATGCCTCGCCTGCGTGGCCTCTATGGCTCTGATTTAAGTAATATCTGCGGGCGTGGTCACGTTTG                      <  SRR4302543.4649418/94‑1 (MQ=60)
                                                                          TCCGTCTTTATACAGATCGCAAAGATTGATGCCTCGCCTGCGTGGCCTCTATGGCTCTGATTTAAGTAATATCTGCGGGCGTGGTCACGTTTGC                     <  SRR4302543.7035085/94‑1 (MQ=60)
                                                                          TCCGTCTTTATACAGATCGCAAAGATTGATGCCTCGCCTGCGTGGCCTCTATGGCTCTGATTTAAGTAATATCTGCGGGCGTGGTCACGTTTGC                     >  SRR4302543.3056507/1‑94 (MQ=60)
                                                                           CCGTCTTTATACAGATCGCAAAGATTGATGCCTCGCCTGCGTGGCCTCTATGGCTCTGATTTAAGTAATATCTGCGGGCGTGGTCACGTTTGCG                    <  SRR4302543.6596616/94‑1 (MQ=60)
                                                                            CGTCTTTATACAGATCGCAAAGATTGATGCCTCGCCTGCGTGGCCTCTATGGCTCTGATTTAAGTAATATCTGCGGGCGTGGTCACGTTTGCGG                   >  SRR4302543.7246414/1‑94 (MQ=60)
                                                                              TCTTTATACAGATCGCAAAGATTGATGCCTCGCCTGCGTGGCCTCTATGGCTCTGATTTAAGTAATATCTGCGGGCGTGGTCACGTTTGCGGGG                 <  SRR4302543.6831853/94‑1 (MQ=60)
                                                                               CTTTATACAGATCGCAAAGATTGATGCCTCGCCTGCGTGGCCTCTATGGCTCTGATTTAAGTAATATCTGCGGGCGGGGTCACGTTTGCGGGGC                >  SRR4302543.2512205/1‑94 (MQ=60)
                                                                                TTTATACAGATCGCAAAGATTGATGCCTCGCCTGCGTGGCCTCTATGGCTCTGATTTAAGTAATATCTGCGGGCGTGGTCACGTTTGCGGGGCT               <  SRR4302543.5858229/94‑1 (MQ=60)
                                                                                TTTATACAGATCGCAAAGATTGATGCCTCGCCTGCGTGGCCTCTATGGCTCTGATTTAAGTAATATCTGCGGGCGTGGTCACGTTTGCGGGGCT               <  SRR4302543.6732530/94‑1 (MQ=60)
                                                                                  TATACAGATCGCAAAGATTGATGCCTCGCCTGCGTGGCCTCTATGGCTCTGATTTAAGTAATATCTGCGGGCGTGGTCACGTTTGCGGGGCTAT             <  SRR4302543.3982987/94‑1 (MQ=60)
                                                                                  TATACAGATCGCAAAGATTGATGCCTCGCCTGCGTGGCCTCTATGGCTCTGATTTAAGTAATATCTGCGGGCGTGGTCACGTTTGCGGGGCTAT             <  SRR4302543.95842/94‑1 (MQ=60)
                                                                                    TACAGATCGCAAATATGGATGCCTCGACTGCGTGGCCTCTATGGCTCTGTTTTAAGTAATATCTGCGGGCTTGGTCACGTTTGCGGGGCTATAT           <  SRR4302543.4065898/94‑1 (MQ=60)
                                                                                    TACAGATCGCAAAGATTGATGCCTCGCCTGCGTGGCCTCTATGGCTCTGATTTAAGTAATATCTGCGGGCGTGGTCACGTTTGCGGGGCTATAT           <  SRR4302543.6161502/94‑1 (MQ=60)
                                                                                    TACAGATCGCAAAGATTGATGCCTCGCCTGCGTGGCCTCTATGGCTCTGATTTAAGTAATATCTGCGGGCGTGGTCACGTTTGCGGGGCTATAT           <  SRR4302543.4065897/94‑1 (MQ=60)
                                                                                    TACAGATCGCAAAGATTGATGCCTCGCCTGCGTGGCCTCTATGGCTCTGATTTAAGTAATATCTGCGGGCGTGGTCACGTTTGCGGGGCTATAT           <  SRR4302543.918591/94‑1 (MQ=60)
                                                                                    TACAGATCGCAAAGATTGATGCCTCGCCTGCGTGGCCTCTATGGCTCTGATTTAAGTAATATCTGCGGGCGTGGTCACGTTTGCGGGGCTATAT           >  SRR4302543.4979054/1‑94 (MQ=60)
                                                                                    TACAGATCGCAAAGATTGATGCCTCGCCTGCGTGGCCTCTATGGCTCTGATTTAAGTAATATCTGCGGGCGTGGTCACGTTTGCGGGGCTATAT           >  SRR4302543.2140054/1‑94 (MQ=60)
                                                                                        GATCGCAAAGATTGATGCCTCGCCTGCGTGGCCTCTATGGCTCTGATTTAAGTAATATCTGCGGGCGTGGTCACGTTTGCGGGGCTATATGTAC       <  SRR4302543.3358396/94‑1 (MQ=60)
                                                                                         ATCGCAAAGATTGATGCCTCGCCTGCGTGGCCTCTATGGCTCTGATTTAAGTAATATCTGCGGGCGTGGTCACGTTTGCGGGGCTATATGTACC      <  SRR4302543.6330001/94‑1 (MQ=60)
                                                                                         ATCGCAAAGATTGATGCCTCGCCTGCGTGGCCTCTATGGCTCTGATTTAAGTAATATCTGCGGGCGTGGTCACGTTTGCGGGGCTATATGTACC      >  SRR4302543.5368619/1‑94 (MQ=60)
                                                                                         ATCGCAAAGATTGATGCCTCGCCTGCGTGGCCTCTATGGCTCTGATTTAAGTAATATCTGCGGGCGTGGTCACGTTTGCGGGGCTATATGTACC      >  SRR4302543.8005022/1‑94 (MQ=60)
                                                                                         ATCGCAAAGATTGATGCCTCGCCTGCGTGGCCTCTATGGCTCTGATTTAAGTAATATCTGCGGGCGTGGTCACGTTTGCGCGGCTATATGCACC      >  SRR4302543.8005023/1‑94 (MQ=60)
                                                                                          TCGCAAAGATTGATGCCTCGCCTGCGTGGCCTCTATGGCTCTGATTTAAGTAATATCTGCGGGCGTGGTCACGTTTGCGGGGCTATATGTACCC     <  SRR4302543.6904730/94‑1 (MQ=60)
                                                                                          TCGCAAAGATTGATGCCTCGCCTGCGTGGCCTCTATGGCTCTGATTTAAGTAATATCTGCGGGCGTGGTCACGTTTGCGGGGCTATATGTACCC     <  SRR4302543.3177294/94‑1 (MQ=60)
                                                                                             CAAAGATTGATGCCTCGCCTGCGTGGCCTCTATGGCTCTGATTTAAGTAATATCTGCGGGCGTGGTCACGTTTGCGGGGCTATATGTACCCGTT  <  SRR4302543.3895652/94‑1 (MQ=60)
                                                                                             CAAAGATTGATGCCTCGCCTGCGTGGCCTCTATGGCTCTGATTTAAGTAATATCTGCGGGCGTGGTCACGTTTGCGGGGCTATATGTACCCGTT  >  SRR4302543.2016128/1‑94 (MQ=60)
                                                                                             CAAAGATTGATGCCTCGCCTGCGTGGCCTCTATGGCTCTGATTTAAGTAATATCTGCGGGCGTGGTCACGTTTGCGGGGCTATATGTACCCGTT  >  SRR4302543.2151344/1‑94 (MQ=60)
                                                                                             |                                                                                             
GAAGTCACTTATTTTCCCCGGAAGCACATTCACTTCACAATTTGTTTACATCAATTTTAACACATCATCAACAATCCGTCTTTATACAGATCGTAAAGATTGATGCCTCGCCTGCGTGGCCTCTATGGCTCTGATTTAAGTAATATCTGCGGGCGTGGTCACGTTTGCGGGGCTATATGTACCCGTT  >  NC_000913/2276250‑2276436

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑