Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I1 R1
|
1696 |
279.3 |
15874187 |
97.8% |
15524954 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
2,290,493 |
A→G |
N164N (AAT→AAC) |
dsbE ← |
disulfide oxidoreductase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 2,290,493 | 0 | A | G | 100.0%
| 798.9
/ NA
| 252 | N164N (AAT→AAC) | dsbE | disulfide oxidoreductase |
| Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (121/131); total (121/131) |
Only 100 of 258 total aligned reads displayed.
GCATCAGCACGCCCAATAAAAACCTCATTGTGCGGCCTCCTTACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGATTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAGAAACGTTTCTGGCGCGCCATAGACACCGAGATCCAGCC > NC_000913/2290403‑2290581
|
gcatcagcaCGCCCAATAAAAACCTCATTGTGCGGCCTCCTTACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGtt < 1:4288680/93‑1 (MQ=255)
atcagcaCGCCCAATAAAAACCTCATTGTGCGGCCTCCTTACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCa < 1:5787177/93‑1 (MQ=255)
tcagcaCGCCCAATAAAAACCTCATTGTGCGGCCTCCTTACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAg > 1:3731648/1‑93 (MQ=255)
tcagcaCGCCCAATAAAAACCTCATTGTGCGGCCTCCTTACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGGTCAg > 1:542280/1‑93 (MQ=255)
cagcaCGCCCAATAAAAACCTCATTGTGCGGCCTCCTTACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGa < 1:6889823/93‑1 (MQ=255)
aCGCCCAATAAAAACCTCATTGTGCGGCCTCCTTACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGc < 1:7586085/93‑1 (MQ=255)
cGCCCAATAAAAACCTCATTGTGCGGCCTCCTTACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGcc > 1:7907546/1‑93 (MQ=255)
cGCCCAATAAAAACCTCATTGTGCGGCCTCCTTACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGcc < 2:5744426/93‑1 (MQ=255)
gCCCAATAAAAACCTCATTGTGCGGCCTCCTTACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGccc < 1:6247993/93‑1 (MQ=255)
cccAATAAAAACCTCATTGTGCGGCCTCCTTACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCg > 1:252391/1‑93 (MQ=255)
ccAATAAAAACCTCATTGTGCGGCCTCCTTACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGc > 2:818376/1‑93 (MQ=255)
ccAATAAAAACCTCATTGTGCGGCCTCCTTACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGc > 1:4527793/1‑93 (MQ=255)
cAATAAAAACCTCATTGTGCGGCCTCCTTACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTTAGATCGCCCGCa > 2:1269556/1‑93 (MQ=255)
cAATAAAAACCTCATTGTGCGGCCTCCTTACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCa < 2:3560951/93‑1 (MQ=255)
cAATAAAAACCTCATTGTGCGGCCTCCTTACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGATCAGAGCGCCCGcg > 2:6617277/1‑92 (MQ=255)
aaTAAAAACCTCATTGTGCGGCCTCCTTGCTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCAt < 1:1974018/93‑1 (MQ=255)
aaTAAAAACCTCATTGTGCGGCCTCCTTACTGTATTTCTCCCACAGTGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCAt < 2:1047100/93‑1 (MQ=255)
aTAAAAACCTCATTGTGCGGCCTCCTTACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATg > 1:5202946/1‑93 (MQ=255)
aaaaaCCTCATTGTGCGGCCTCCTTACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGc < 2:5818238/93‑1 (MQ=255)
aaaaaCCTCATTGTGCGGCCTCCTTACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGATCAGATCGCCCGCATGGc > 2:5385567/1‑93 (MQ=255)
aaaaCCTCATTGTGCGGCCTCCTTACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCg < 2:7609974/93‑1 (MQ=255)
aaaCCTCATTGTGCGGCCTCCTTACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGCTGGTTCAGATCGTCCGCCTGGCGa > 1:1300858/1‑93 (MQ=255)
aaaCCTCATTGTGCGGCCTCCTTACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGa < 2:6437573/93‑1 (MQ=255)
aaCCTCATTGTGCGGCCTCCTTACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGAt > 2:1666787/1‑93 (MQ=255)
aCCTCATTGTGCGGCCTCCTTACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATa < 2:4878936/93‑1 (MQ=255)
aCCTCATTGTGCGGCCTCCTTACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATa > 1:3761958/1‑93 (MQ=255)
ccTCATTGTGCGGCCTCCTTACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAg < 1:1509799/93‑1 (MQ=255)
cATTGTGCGGCCTCCTTACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGAAAGCGa > 2:2687367/1‑93 (MQ=255)
ttGTGCGGCCTCCTTACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAat > 2:3618093/1‑93 (MQ=255)
gtgCGGCCTCCTTACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAatga < 1:6522472/93‑1 (MQ=255)
gtgCGGCCTCCTTACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAatga < 1:6171004/93‑1 (MQ=255)
gtgCGGCCTCCTTACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAatga < 1:5809558/93‑1 (MQ=255)
gtgCGGCCTCCTTACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAatga < 2:5073945/93‑1 (MQ=255)
gtgCGGCCTCCTTACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAatga < 2:942215/93‑1 (MQ=255)
gtgCGGCCTCCTTACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAatga < 1:1604516/93‑1 (MQ=255)
gCGGCCTCCTTACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAatgatg > 2:59177/1‑93 (MQ=255)
cGGCCTCCTTACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGAtgc < 2:1428037/93‑1 (MQ=255)
cGGCCTCCTGACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGAtgc < 1:5343573/93‑1 (MQ=255)
gCCTCCTTACTGTATTGCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGAtgccg < 2:2073491/93‑1 (MQ=255)
cctcctTACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGAtgccgt > 1:26458/1‑93 (MQ=255)
ctcctTACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGAtgccgtt < 2:510767/93‑1 (MQ=255)
ctcctTACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGAtgccgtt < 2:1871448/93‑1 (MQ=255)
tcctTACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGAtgccgttc > 1:3360784/1‑92 (MQ=255)
cctTACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGAtgccgttgc > 1:1055120/1‑93 (MQ=255)
ctTACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGAtgccgttgcc > 2:2570415/1‑93 (MQ=255)
ctTACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGAtgccgttgcc > 1:6755906/1‑93 (MQ=255)
ttACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCACAGACGCGAGGGTTCAGATCGCCCGCATGGCGGTAGCGAATGAtggcgttggcg > 1:2943956/1‑93 (MQ=255)
tGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCaa < 2:4117235/93‑1 (MQ=255)
tGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCaa < 1:4133018/93‑1 (MQ=255)
tGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCaa < 1:2470651/93‑1 (MQ=255)
ttCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAGa < 1:7189561/93‑1 (MQ=255)
ttCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAGa > 2:329124/1‑93 (MQ=255)
ttCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAGa < 2:6833574/93‑1 (MQ=255)
ttCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAGa < 1:1170475/93‑1 (MQ=255)
tctcCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAGaa < 2:1548242/93‑1 (MQ=255)
tctcCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAGaa < 1:7791281/93‑1 (MQ=255)
tctcCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAGaa > 1:7623951/1‑93 (MQ=255)
ctcCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAGaaa < 2:6958446/93‑1 (MQ=255)
tcCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAGAAAc > 2:5570487/1‑93 (MQ=255)
ccACATAGGCTTGATCTCTCCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAGAAAAGt < 2:4456349/93‑1 (MQ=255)
ccACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAGAAACGt < 2:4939895/93‑1 (MQ=255)
ccACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAGAAACGt > 1:5543528/1‑93 (MQ=255)
ccaGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAGAAACGttt < 1:1817471/92‑1 (MQ=255)
acaGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAGAAACGttt > 1:3104117/1‑93 (MQ=255)
acaGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAGAAACGttt > 1:6485963/1‑93 (MQ=255)
acaGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAGAAACGttt > 1:3401347/1‑93 (MQ=255)
acaGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAGAAACGttt > 2:1965747/1‑93 (MQ=255)
gCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAGAAACGTTTCTg < 2:469564/93‑1 (MQ=255)
gCGGCTTGATCTCTTCTTCCCAGACGCGAGGGGTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAGAAACGATTCTg > 2:3432734/1‑93 (MQ=255)
cGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAGAAACGTTTCTgg > 1:497329/1‑93 (MQ=255)
ggCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAGAAACGTTTCTGgc < 1:4614309/93‑1 (MQ=255)
gCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAGAAACGTTTCTGgcg > 1:4665263/1‑93 (MQ=255)
cTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAGAAACGTTTCTGgcgc < 2:7224806/93‑1 (MQ=255)
ttGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAGAAACGTTTCTGgcgcg > 2:6239940/1‑93 (MQ=255)
gATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAGAAACGTTTCTGGCGCGcc > 1:7340329/1‑93 (MQ=255)
aTCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAGAAACGTTTCTGGCGCGCCa < 2:4565791/93‑1 (MQ=255)
tctcTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAGAAACGTTTCTGGCGCGCCAt > 1:4701616/1‑93 (MQ=255)
tctcTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAGAAACGTTTCTGGCGCGCCAt > 2:5699318/1‑93 (MQ=255)
tcttctTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAGAAACGTTTCTGGCGCGCCATAg > 1:3896783/1‑93 (MQ=255)
tcttctTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAGAAACGTTTCTGGCGCGCCATAg > 2:6313087/1‑93 (MQ=255)
cttcttCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAGAACCGTTTCTGGCGCGCCATAGa < 1:4180033/93‑1 (MQ=255)
cttcttCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAGAAACGTTTCTGGCGCGCCATAGa < 2:5202945/93‑1 (MQ=255)
cttcttCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAGAAACGTTTCTGGCGCGCCATAGa > 2:7894348/1‑93 (MQ=255)
cttcttCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAGAAACGTTTCTGGCGCGCCATAGa < 2:312078/93‑1 (MQ=255)
cttcttCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAGAAACGTTTCTGGCGCGCCATAGa < 1:2353816/93‑1 (MQ=255)
ttcttcCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAGAAACGTTTCTGGCGCGCCATAGac > 1:4850389/1‑93 (MQ=255)
ttcttcCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAGAAACGTTTCTGGCGCGCCATAGac < 1:6010884/93‑1 (MQ=255)
ttcttcCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAGAAACGTGTCTGGCGCGCCATAGac > 1:7017633/1‑93 (MQ=255)
tcttcCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAGAAACGTTTCTGGCGCGCCATAGaca < 2:6094632/93‑1 (MQ=255)
cttcCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAGAAACGTTTCTGGCGCGCCATAGacac < 2:4343826/93‑1 (MQ=255)
ttcCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAGAAACGTTTCTGGCGCGCCATAGACAcc > 2:7515358/1‑93 (MQ=255)
tcCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAGAAACGTTTCTGGCGCGCCATAGACACCg < 1:3321582/93‑1 (MQ=255)
cccAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAGAAACGTTTCTGGCGCGCCATAGACACCga < 1:3650624/93‑1 (MQ=255)
ccAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAGAAACGTTTCTGGCGCGCCATAGACACCgag > 2:4803061/1‑93 (MQ=255)
cAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAGAAACGTTTCTGGCGCGCCATAGACACCgaga > 2:5323098/1‑93 (MQ=255)
gACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAGAAACGTTTCTGGCGCGCCATAGACACCGAGATc > 2:5652375/1‑93 (MQ=255)
gACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAGAAACGTTTCTGGCGCGCCATAGACACCGAGATc < 1:2738521/93‑1 (MQ=255)
cgcgAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAGAAACGTTTCTGGCGCGCCATAGACACCGAGATCCa > 2:3865972/1‑93 (MQ=255)
cgcgAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAGAAACGTTTCTGGCGCGCCATAGACACCGAGATCCa < 2:2975738/93‑1 (MQ=255)
gcgAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCAGTCAATAAGAAACGTTTCTGGCGCGCCATAGACACCGAGATCCAg > 1:1267845/1‑93 (MQ=255)
|
GCATCAGCACGCCCAATAAAAACCTCATTGTGCGGCCTCCTTACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGATTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAGAAACGTTTCTGGCGCGCCATAGACACCGAGATCCAGCC > NC_000913/2290403‑2290581
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
TCAGCATCAGCACGCCCAATAAAAACCTCATTGTGCGGCCTCCTTACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGATTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAGAAACGTTTCTGGCGCGCCATAGACACCGAGATCCAGCCCTAAC > NC_000913/2290400‑2290586
|
TCAGCATCAGCACGCCCAATAAAAACCTCATTGTGCGGCCTCCTTACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGG > SRR4302543.6237431/1‑94 (MQ=60)
TCAGCATCAGCACGCCCAATAAAAACCTCATTGTGCGGCCTCCTTACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGG < SRR4302543.5267118/94‑1 (MQ=60)
CAGCATCAGCACGCCCAATAAAAACCTCATTGTGCGGCCTCCTTACTGTATTTCTCCCACATCGTCTTGATCTCTTCTTCCCAGACGCGAGGGT < SRR4302543.3685952/94‑1 (MQ=60)
CAGCATCAGCACGCCCAATAAAAACCTCATTGTGCGGCCTCCTTACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGT < SRR4302543.3686199/94‑1 (MQ=60)
GCATCAGCACGCCCAATAAAAACCTCATTGTGCGGCCTCCTTACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTC < SRR4302543.7464701/94‑1 (MQ=60)
GCATCAGCACGCCCAATAAAAACCTCATTGTGCGGCCTCCTTACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTC > SRR4302543.4718836/1‑94 (MQ=60)
GCATCAGCACGCCCAATAAAAACCTCATTGTGCGGCCTCCTTACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTC < SRR4302543.4327661/94‑1 (MQ=60)
ATCAGCACGCCCAATAAAAACCTCATTGTGCGGCCTCCTTACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAG < SRR4302543.5839832/94‑1 (MQ=60)
ATCAGCACGCCCAATAAAAACCTCATTGTGCGGCCTCCTTACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAG > SRR4302543.4249075/1‑94 (MQ=60)
ATCAGCACGCCCAATAAAAACCTCATTGTGCGGCCTCCTTACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAG > SRR4302543.3764465/1‑94 (MQ=60)
ATCAGCACGCCCAATAAAAACCTCATTGTGCGGCCTCCTTACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGGTCAG > SRR4302543.3764464/1‑94 (MQ=60)
ATCAGCACGCCCAATAAAAACCTCATTGTGCGGCCTCCTTACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGGTCAG > SRR4302543.547295/1‑94 (MQ=60)
CAGCACGCCCAATAAAAACCTCATTGTGCGGCCTCCTTACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGAT < SRR4302543.6954613/94‑1 (MQ=60)
CAGCACGCCCAATAAAAACCTCATTGTGCGGCCTCCTTACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGAT < SRR4302543.5458328/94‑1 (MQ=60)
AGCACGCCCAATAAAAACCTCATTGTGCGGCCTCCTTACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATC > SRR4302543.6591999/1‑94 (MQ=60)
CACGCCCAATAAAAACCTCATTGTGCGGCCTCCTTACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGC > SRR4302543.4610814/1‑94 (MQ=60)
ACGCCCAATAAAAACCTCATTGTGCGGCCTCCTTACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCC > SRR4302543.7981849/1‑94 (MQ=60)
ACGCCCAATAAAAACCTCATTGTGCGGCCTCCTTACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCC < SRR4302543.7658176/94‑1 (MQ=60)
CGCCCAATAAAAACCTCATTGTGCGGCCTCCTTACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCC > SRR4302543.2989200/1‑94 (MQ=60)
GCCCAATAAAAACCTCATTGTGCGGCCTCCTTACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCG < SRR4302543.6306932/94‑1 (MQ=60)
GCCCAATAAAAACCTCATTGTGCGGCCTCCTTACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCG > SRR4302543.254592/1‑94 (MQ=60)
GCCCAATAAAAACCTCATTGTGCGGCCTCCTTACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCG > SRR4302543.4695140/1‑94 (MQ=60)
GCCCAATAAAAACCTCATTGTGCGGCCTCCTTACTGTATTTCTCCCACAGCGGCTTGATCTACTCTTGCCAGATGCGAGGATTCAGtggccacg > SRR4302543.5625703/1‑86 (MQ=60)
CCCAATAAAAACCTCATTGTGCGGCCTCCTTACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGC > SRR4302543.4569003/1‑94 (MQ=60)
CCAATAAAAACCTCATTGTGCGGCCTCCTTACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCA > SRR4302543.2473946/1‑94 (MQ=60)
CAATAAAAACCTCATTGTGCGGCCTCCTTACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCAT > SRR4302543.2580391/1‑94 (MQ=60)
CAATAAAAACCTCATTGTGCGGCCTCCTTACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGGTCAGATCGCCCGCAT > SRR4302543.4549500/1‑94 (MQ=60)
AATAAAAACCTCATTGTGCGGCCTCCTTGCTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATG < SRR4302543.1991717/94‑1 (MQ=60)
AATAAAAACCTCATTGTGCGGCCTCCTTACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATG > SRR4302543.6239086/1‑94 (MQ=60)
AATAAAAACCTCATTGTGCGGCCTCCTTACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATG > SRR4302543.5249850/1‑94 (MQ=60)
ATAAAAACCTCATTGTGCGGCCTCCTTACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGG < SRR4302543.484651/94‑1 (MQ=60)
TAAAAACCTCATTGTGCGGCCTCCTTACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGG > SRR4302543.2403829/1‑94 (MQ=60)
AAAAACCTCATTGTGCGGCCTCCTTACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCG > SRR4302543.5843758/1‑94 (MQ=60)
AAAACCTCATTGTGCGGCCTCCTTACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGCTGGTTCAGATCGTCCGCCTGGCGA > SRR4302543.1312414/1‑94 (MQ=60)
AAAACCTCATTGTGCGGCCTCCTTACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGA > SRR4302543.2637144/1‑94 (MQ=60)
AAACCTCATTGTGCGGCCTCCTTACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGAT > SRR4302543.6858963/1‑94 (MQ=60)
AACCTCATTGTGCGGCCTCCTTACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATA > SRR4302543.3795067/1‑94 (MQ=60)
CCTCATTGTGCGGCCTCCTTACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGC < SRR4302543.1523357/94‑1 (MQ=60)
CCTCATTGTGCGGCCTCCTTACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGC > SRR4302543.5321414/1‑94 (MQ=60)
CCTCATTGTGCGGCCTCCTTACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGC > SRR4302543.2095612/1‑94 (MQ=60)
CCTCATTGTGCGGCCTCCTTACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGC > SRR4302543.1184615/1‑94 (MQ=60)
CTCATTGTGCGGCCTCCTTACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCG < SRR4302543.5721731/94‑1 (MQ=60)
CTCATTGTGCGGCCTCCTTACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCG > SRR4302543.4610633/1‑94 (MQ=60)
CTCATTGTGCGGCCTCCTTACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCAGGGCGATAGCG < SRR4302543.7870501/94‑1 (MQ=60)
TCATTGTGCGGCCTCCTTACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGA > SRR4302543.7128278/1‑94 (MQ=60)
TCATTGTGCGGCCTCCTTACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGA > SRR4302543.1119298/1‑94 (MQ=60)
GTGCGGCCTCCTTACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGAT < SRR4302543.1618836/94‑1 (MQ=60)
GTGCGGCCTCCTTACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGAT < SRR4302543.6583892/94‑1 (MQ=60)
GTGCGGCCTCCTTACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGAT < SRR4302543.5862394/94‑1 (MQ=60)
GTGCGGCCTCCTTACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGAT < SRR4302543.6229376/94‑1 (MQ=60)
GTGCGGCCTCCTTACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGGTCAGATCGCCCGCATGGCGATAGCGGATGAT > SRR4302543.6554529/1‑94 (MQ=60)
TGCGGCCTCCTTACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATG > SRR4302543.7937019/1‑94 (MQ=60)
CGGCCTCCTTACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCC < SRR4302543.612627/94‑1 (MQ=60)
CGGCCTCCTTACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCC < SRR4302543.5391699/94‑1 (MQ=60)
CGGCCTCCTGACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCC < SRR4302543.5391916/94‑1 (MQ=60)
GGCCTCCTTACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCG < SRR4302543.1913842/94‑1 (MQ=60)
GCCTCCTTACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGT > SRR4302543.26693/1‑94 (MQ=60)
CTCCTTACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTG > SRR4302543.3733511/1‑94 (MQ=60)
CTCCTTACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTC > SRR4302543.3391009/1‑94 (MQ=60)
CTCCTTACTGCATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATaggccgcacggaggtagcgactgagtccgctg > SRR4302543.2115328/1‑62 (MQ=60)
TCCTTACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGC > SRR4302543.1064587/1‑94 (MQ=60)
TCCTTACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGC < SRR4302543.7550272/94‑1 (MQ=60)
CCTTACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCC > SRR4302543.1730484/1‑94 (MQ=60)
CCTTACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCC > SRR4302543.6819713/1‑94 (MQ=60)
CTTACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGGCGTTGCCG > SRR4302543.7019736/1‑94 (MQ=60)
CTTACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCACAGACGCGAGGGTTCAGATCGCCCGCATGGCGGTAGCGAATGATGGCGTTGGCG > SRR4302543.2970685/1‑94 (MQ=60)
TTACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGT > SRR4302543.7205952/1‑94 (MQ=60)
CTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAA > SRR4302543.2947690/1‑94 (MQ=60)
TGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAAT < SRR4302543.4170310/94‑1 (MQ=60)
TGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAAT < SRR4302543.2492953/94‑1 (MQ=60)
TGGATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAAT < SRR4302543.544165/94‑1 (MQ=60)
TATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAA > SRR4302543.5870181/1‑94 (MQ=60)
TATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAA < SRR4302543.7769422/94‑1 (MQ=60)
ATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAG < SRR4302543.1197603/94‑1 (MQ=60)
TTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAGA > SRR4302543.6423060/1‑94 (MQ=60)
TTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAGAA < SRR4302543.7259297/94‑1 (MQ=60)
TTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAGAA > SRR4302543.7696302/1‑94 (MQ=60)
TTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAGAA < SRR4302543.1181103/94‑1 (MQ=60)
TTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAGAA < SRR4302543.2803687/94‑1 (MQ=60)
TCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAGAAA < SRR4302543.7864712/94‑1 (MQ=60)
TCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAGAAA < SRR4302543.3368823/94‑1 (MQ=60)
CTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCTCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAGAAAC < SRR4302543.33797/94‑1 (MQ=60)
CTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAGAAAC < SRR4302543.1448471/94‑1 (MQ=60)
CTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAGAAAC > SRR4302543.7266368/1‑94 (MQ=60)
TCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAGAAACG < SRR4302543.2507685/94‑1 (MQ=60)
CCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAGAAACGT < SRR4302543.3897214/94‑1 (MQ=60)
CCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAGAAACGT > SRR4302543.5593931/1‑94 (MQ=60)
CCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAGAAACGT < SRR4302543.1338911/94‑1 (MQ=60)
CCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAGAAACGTT > SRR4302543.5788198/1‑94 (MQ=60)
CACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAAcgaagcctgtgacgtcaataataaacctgt > SRR4302543.3796099/1‑64 (MQ=60)
CACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAGAAACGTTT > SRR4302543.6547071/1‑94 (MQ=60)
CACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAGAAACGTTT > SRR4302543.3431816/1‑94 (MQ=60)
CACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAGAAACGTTT > SRR4302543.3431659/1‑94 (MQ=60)
CACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAGAAACGTTT > SRR4302543.3132040/1‑94 (MQ=60)
CACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAGAAACGTTT > SRR4302543.3132039/1‑94 (MQ=60)
CCAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAGAAACGTTTC < SRR4302543.1833771/94‑1 (MQ=60)
ACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAGAAACGTTTC < SRR4302543.5562384/94‑1 (MQ=60)
AGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAGAAACGTTTCTG < SRR4302543.3643240/94‑1 (MQ=60)
GCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAGAAACGTTTCTGG > SRR4302543.501925/1‑94 (MQ=60)
GCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAGAAACGTTTCTGG > SRR4302543.501924/1‑94 (MQ=60)
CGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGGCGTCAATAAGAAACGTTTCTGGC > SRR4302543.1579285/1‑94 (MQ=60)
CGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAGAAACGTTTCTGGC > SRR4302543.331721/1‑94 (MQ=60)
GGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAGAAACGTTTCTGGCG < SRR4302543.499277/94‑1 (MQ=60)
GGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAGAAACGTTTCTGGCG < SRR4302543.4656223/94‑1 (MQ=60)
GGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAGAAACGTTTCTGGCG > SRR4302543.4707779/1‑94 (MQ=60)
TGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAGAAACGTTTCTGGCGCGCC > SRR4302543.7410946/1‑94 (MQ=60)
ATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAGAAACGTTTCTGGCGCGCCAT < SRR4302543.4430698/94‑1 (MQ=60)
ATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAGAAACGTTTCTGGCGCGCCAT < SRR4302543.7821002/94‑1 (MQ=60)
ATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAGAAACGTTTCTGGCGCGCCAT > SRR4302543.4744564/1‑94 (MQ=60)
TCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAGAAACGTTTCTGGCGCGCCATA > SRR4302543.1863238/1‑94 (MQ=60)
CTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAGAAACGTTTCTGGCGCGCCATAG > SRR4302543.3931196/1‑94 (MQ=60)
CTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAGAACCGTTTCTGGCGCGCCATAGAC < SRR4302543.4217909/94‑1 (MQ=60)
CTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAGAAACGTTTCTGGCGCGCCATAGAC < SRR4302543.2375163/94‑1 (MQ=60)
CTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAGAAACGTTTCTGGCGCGCCATAGAC < SRR4302543.6534145/94‑1 (MQ=60)
CTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAGAAACGTTTCTGGCGCGCCATAGAC < SRR4302543.4217904/94‑1 (MQ=60)
CTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAGAAACGTTTCTGGCGCGCCATAGAC > SRR4302543.4894617/1‑94 (MQ=60)
CTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAGAAACGTTTCTGGCGCGCCATAGAC < SRR4302543.9205/94‑1 (MQ=60)
CTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAGAAACGTGTCTGGCGCGCCATAGAC > SRR4302543.7084728/1‑94 (MQ=60)
CTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAGAAAAGTATCTGGCGCGCCATAGAC > SRR4302543.7051503/1‑94 (MQ=60)
TTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAGAAACGTTTCTGGCGCGCCATAGACA < SRR4302543.6066331/94‑1 (MQ=60)
TTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAGAAACGTTTCTGGCGCGCCATAGACA > SRR4302543.5997658/1‑94 (MQ=60)
TCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAGAAACGTTTCTGGCGCGCCATAGACAC < SRR4302543.5176914/94‑1 (MQ=60)
CTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAGAAACGTTTCTGGCGCGCCATAGACACC < SRR4302543.2706923/94‑1 (MQ=60)
TTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAGAAACGTTTCTGGCGCGCCATAGACACCG < SRR4302543.667006/94‑1 (MQ=60)
TTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAGAAACGTTTCTGGCGCGCCATAGACACCG > SRR4302543.7670808/1‑94 (MQ=60)
TCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAGAAACGTTTCTGGCGCGCCATAGACACCGA < SRR4302543.3351547/94‑1 (MQ=60)
CCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAGAAACGTTTCTGGCGCGCCATAGACACCGAG > SRR4302543.1307664/1‑94 (MQ=60)
CCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAGAAACGTTTCTGGCGCGCCATAGACACCGAG < SRR4302543.3682705/94‑1 (MQ=60)
CCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAGAAACGTTTCTGGCGCGCCATAGACACCGAGA < SRR4302543.1709658/94‑1 (MQ=60)
CAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAGAAACGTTTCTGGCGCGCCATAGACACCGAGAT < SRR4302543.3639339/94‑1 (MQ=60)
AGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAGAAACGTTTCTGGCGCGCCATAGACACCGAGATC < SRR4302543.3786519/94‑1 (MQ=60)
GACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAGAAACGTTTCTGGCGCGCCATAGACACCGAGATCC < SRR4302543.2763434/94‑1 (MQ=60)
ACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAGAAACGTTTCTGGCGCGCCATAGACACCGAGATCCA < SRR4302543.6211148/94‑1 (MQ=60)
CGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAGAAACGTTTCTGGCGCGCCATAGACACCGAGATCCAG < SRR4302543.4214950/94‑1 (MQ=60)
CGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCAGTCAATAAGAAACGTTTCTGGCGCGCCATAGACACCGAGATCCAG > SRR4302543.1279184/1‑94 (MQ=60)
GCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAGAAACGTTTCTGGCGCGCCATAGACACCGAGATCCAGC > SRR4302543.4733968/1‑94 (MQ=60)
CGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAGAAACGTTTCTGGCGCGCCATAGACACCGAGATCCAGCC > SRR4302543.410738/1‑94 (MQ=60)
AGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAGAAACGTTTCTGGCGCGCCATAGACACCGAGATCCAGCCCT > SRR4302543.6228150/1‑94 (MQ=60)
AGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAGAAACGTTTCTGGCGCGCCATAGACACCGAGATCCAGCCCT > SRR4302543.7842242/1‑94 (MQ=60)
GGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAGAAACGTTTCTGGCGCGCCATAGACACCGAGATCCAGCCCTA > SRR4302543.510899/1‑94 (MQ=60)
GGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAGAAACGTTTCTGGCGCGCCATAGACACCGAGATCCAGCCCTAA > SRR4302543.1684464/1‑94 (MQ=60)
GGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAGAAACGTTTCTGGCGCGCCATAGACACCGAGATCCAGCCCTAA < SRR4302543.2986481/94‑1 (MQ=60)
GGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAGAAACGTTTCTGGCGCGCCATAGACACCGAGATCCAGCCCTAA < SRR4302543.974685/94‑1 (MQ=60)
GTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAGAAACGTTTCTGGCGCGCCATAGACACCGAGATCCAGCCCTAAC > SRR4302543.3768383/1‑94 (MQ=60)
|
TCAGCATCAGCACGCCCAATAAAAACCTCATTGTGCGGCCTCCTTACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGATTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAGAAACGTTTCTGGCGCGCCATAGACACCGAGATCCAGCCCTAAC > NC_000913/2290400‑2290586
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
