Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I1 R1	1696	279.3	15874187	97.8%	15524954	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	2,296,123	T→C	T53A (ACC→GCC)	napC ←	cytochrome c‑type protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	2,296,123	0	T	C	99.6%	741.0 / NA	234	T53A (ACC→GCC)	napC	cytochrome c‑type protein
Reads supporting (aligned to +/- strand): ref base T (0/0); major base C (134/98); minor base G (1/0); total (135/99)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 237 total aligned reads displayed.

CGCCGCTACGGTTGTTGTAGTGCACGGAATCCATGTATTCCTGATACACCGTGTTGCGCATTTCGTGGCAGCTAATGCAGAACTCTTCGGTATTGGCTTTTTCCATCCCGGTGTTAAAGCCACCCCAGAAGACGATGCCGCCAACAAAACCGATCAACAGCAGCGTCCCCAGCGCCAGAC  >  NC_000913/2296033‑2296212

cgccgcTACGGTTGTTGTAGTGCACGGAATCCATGTATTCCTGATACACCGTGTTGCGCATTTCGTGGCAGCTAATGCAGAACTCTTCGGCAt                                                                                         >  1:1621709/1‑93 (MQ=255)

cgccgcTACGGTTGTTGTAGTGCACGGAATCCATGTATTCCTGATACACCGTGTTGCGCATTTCGTGGCAGCTAATGCAGAACTCTTCGGCAt                                                                                         <  2:2837912/93‑1 (MQ=255)

  ccgcTACGGTTGTTGTAGTGCACGGAATCCATGTATTCCTGATACACCGTGTTGCGCATTTCGTGGCAGCTAATGCAGAACTCTTCGGCATTg                                                                                       <  1:7378305/93‑1 (MQ=255)

  ccgcTACGGTTGTTGTAGTGCACGGAATCCATGTATTCCTGATACACCGTGTTGCGCATTTCGTGGCAGCTAATGCAGAACTCTTCGGCATTg                                                                                       >  1:1880632/1‑93 (MQ=255)

  ccgcTACGGTTGTTGTAGTGCACGGAATCCATGTATTCCTGATACACCGTGTTGCGCATTTCGTGGCAGCTAATGCAGAACTCTTCGGCATTg                                                                                       <  2:5602303/93‑1 (MQ=255)

   cgcTACGGTTGTTGTAGTGCACGGAATCCATGTATTCCTGATACACCGTGTTGCGCATTTCGTGGCAGCTAATGCAGAACTCTTCGGCATTgg                                                                                      <  1:6577085/93‑1 (MQ=255)

   cgcTACGGTTGTTGTAGTGCACGGAATCCATGTATTCCTGATACACCGTGTTGCGCATTTCGTGGCAGCTAATGCAGAACTCTTCGGCATTgg                                                                                      <  1:1009329/93‑1 (MQ=255)

   cgcTACGGTTGTTGTAGTGCACGGAATCCATGTATTCCTGATACACCGTGTTGCGCATTTCGTGGCAGCTAATGCAGAACTCTTCGGCATTgg                                                                                      <  2:6610852/93‑1 (MQ=255)

    gcTACGGTTGTTGTAGTGCACGGAATCCATGTATTCCTGATACACCGTGTTGCGCATTTCGTGGCAGCTAATGCAGAACTCTTCGGCATTGGc                                                                                     >  1:3756375/1‑93 (MQ=255)

    gcTACGGTTGTTGTAGTGCACGGAATCCATGTATTCCTGATACACCGTGTTGCGCATTTCGTGGCAGCTAATGCAGAACTCTTCGGCATTGGc                                                                                     <  1:5694769/93‑1 (MQ=255)

      tACGGTTGTTGTAGTGCACGGAATCCATGTATTCCTGATACACCGTGTTGCGCATTTCGTGGCAGCTAATGCAGAACTCTTCGGCATTGGCtt                                                                                   >  1:6994981/1‑93 (MQ=255)

      tACGGTTGTTGTAGTGCACGGAATCCATGTATTCCTGATACACCGTGTTGCGCATTTCGTGGCAGCTAATGCAGAACTCTTCGGCATTGGCtt                                                                                   >  1:3137447/1‑93 (MQ=255)

      tACGGTTGTTGTAGTGCACGGAATCCATGTATTCCTGATACACCGTGTTGCGCATTTCGTGGCAGCTAATGCAGAACTCTTCGGCATTGGCtt                                                                                   >  1:2297237/1‑93 (MQ=255)

      tACGGTTGTTGTAGTGCACGGAATCCATGTATTCCTGATACACCGTGTTGCGCATTTCGTGGCAGCTAATGCAGAACTCTTCGGCATTGGCtt                                                                                   >  1:5125972/1‑93 (MQ=255)

       aCGGTTGTTGTAGTGCACGGAATCCATGTATTCCTGATACACCGTGTTGCGCATTTCGTGGCAGCTAATGCAGAACTCTTCGGCATTGGCttt                                                                                  <  1:1010567/93‑1 (MQ=255)

        cGGTTGTTGTAGTGCACGGAATCCATGTATTCCTGATACACCGTGTTGCGCATTTCGTGGCAGCTAATGCAGAACTCTTCGGCATTGGCtttt                                                                                 >  2:744348/1‑93 (MQ=255)

        cGGTTGTTGTAGTGCACGGAATCCATGTATTCCTGATACACCGTGTTGCGCATTTCGTGGCAGCTAATGCAGAACTCTTCGGCATTGGCtttt                                                                                 <  2:4905066/93‑1 (MQ=255)

         tgttgttGTAGTGCACGGAATCCATGTATTCCTGATACACCGTGTTGCGCATTTCGTGGCAGCTAATGCAGAACTCTTCGGCATTGGCttttt                                                                                <  1:6666551/92‑1 (MQ=255)

         ggTTGTTGTAGTGCACGGAATCCATGTATTCCTGATACACCGTGTTGCGCATTTCGTGGCAGCTAATGCAGAACTCTTCGGCATTGGCttttt                                                                                >  2:3139159/1‑93 (MQ=255)

          gttgttGTAGTGCACGGAATCCATGTATTCCTGATACACCGTGTTGCGCATTTCGTGGCAGCTAATGCAGAACTCTTCGGCATTGGCTTTTTc                                                                               <  2:2696350/93‑1 (MQ=255)

           ttgttgTAGTGCACGGAATCCATGTATTCCTGATACACCGTGTTGCGCATTTCGTGGCAGCTAATGCAGAACTCTTCGGCATTGGCTTTTTcc                                                                              <  1:6297396/93‑1 (MQ=255)

           ttgttgTAGTGCACGGAATCCATGTATTCCTGATACACCGTGTTGCGCATTTCGTGGCAGCTAATGCAGAACTCTTCGGCATTGGCTTTTTcc                                                                              >  2:3740036/1‑93 (MQ=255)

              ttgtAGTGCACGGAATCCATGTATTCCTGATACACCGTGTTGCGCATTTCGTGGCAGCTAATGCAGAACTCTTCGGCATTGGCTTTTTCCATc                                                                           >  2:4371637/1‑93 (MQ=255)

              ttgtAGTGCACGGAATCCATGTATTCCTGATACACCGTGTTGCGCATTTCGTGGCAGCTAATGCAGAACTCTTCGGCATTGGCTTTTTCCATc                                                                           <  1:1118158/93‑1 (MQ=255)

                   gTGCACGGAATCCATGTATTCCTGATACACCGTGTTGCGCATTTCGTGGCAGCTAATGCAGAACTCTTCGGCATTGGCTTTTTCCATCCCGgt                                                                      <  2:1243852/93‑1 (MQ=255)

                    tGCACGGATTCCATGTATTCCTGATACACCGTGTTGCGCATTTCGTGGCAGCTAATGCAGAACTCTTCGGCATTGGCTTTTTCCATCCCGgtg                                                                     <  2:1535814/93‑1 (MQ=255)

                     gCACGGAATCCATGTATTCCTGATACACCGTGTTGCGCATTTCGTGGCAGCTAATGCAGAACTCTTCGGCATTGGCTTTTTCCATCCCGgtgt                                                                    <  2:5351369/93‑1 (MQ=255)

                        cGGAATCCATGTATTCCTGATACACCGTGTTGCGCATTTCGTGGCAGCTAATGCAGAACTCTTCGGCATTGGCTTTTTCCATCCCGGTGTTaa                                                                 <  2:7788199/93‑1 (MQ=255)

                         ggAATCCATGTATTCCTGATACACCGTGTTGCGCATTTCGTGGCAGCTAATGCAGAACTCTTCGGCATTGGCTTTTTCCATCCCGGTGTTaaa                                                                >  1:7285783/1‑93 (MQ=255)

                          gAATCCATGTATTCCTGATACACCGTGTTGCGCATTTCGTGGCAGCTAATGCAGAACTCTTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAg                                                               >  2:6247756/1‑93 (MQ=255)

                          gAATCCATGTATTCCTGATACACCGTGTTGCGCATTTCGTGGCAGCTAATGCAGAACTCTTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAg                                                               >  1:7867734/1‑93 (MQ=255)

                           aaTCCATGTATTCCTGATACACCGTGTTGCGCATTTCGTGGCAGCTAATGCAGAACTCTTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAGc                                                              >  2:3393170/1‑93 (MQ=255)

                           aaTCCATGTATTCCTGATACACCGTGTTGCGCATTTCGTGGCAGCTAATGCAGAACTCTTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAGc                                                              >  2:7497960/1‑93 (MQ=255)

                            aTCCATGTATTCCTGATACACCGTGTTGCGCATTTCGTGGCAGCTAATGCAGAACTCTTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAGcc                                                             >  1:4703294/1‑93 (MQ=255)

                             tCCATGTATTCCTGATACACCGTGTTGCGCATTTCGTGGCAGCTAATGCAGAACTCTTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAGCCa                                                            >  2:428763/1‑93 (MQ=255)

                             tCCATGTATTCCTGATACACCGTGTTGCGCATTTCGTGGCAGCTAATGCAGAACTCTTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAGCCa                                                            >  1:5164032/1‑93 (MQ=255)

                              ccATGTATTCCTGATACACCGTGTTGCGCATTTCGTGGCAGCTAATGCAGAACTCTTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAGCCAc                                                           <  2:5344729/93‑1 (MQ=255)

                               cATGTATTCCTGATACACCGTGTTGCGCATTTCGTGGCAGCTCATGCAGCACTCTTCGGCCTTGGCTTTTTGCATCCCGGTGTTAACGCCatc                                                          >  1:309376/1‑91 (MQ=255)

                               cATGTATTCCTGATACACCGTGTTGCGCATTTCGTGGCAGCTAATGCAGAACTCTTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAGCCAcc                                                          >  1:2204752/1‑93 (MQ=255)

                               cATGTATTCCTGATACACCGTGTTGCGCATTTCGTGGCAGCTAATGCAGAACTCTTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAGCCAcc                                                          >  2:3734564/1‑93 (MQ=255)

                                aTGTATTCCTGATACACCGTGTTGCGCATTTCGTGGCAGCTAATGCAGAACTCTTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAGCCAccc                                                         >  1:215713/1‑93 (MQ=255)

                                 tGTATTCCTGATACACCGTGTTGCGCATTTCGTGGCAGCTAATGCAGAACTCTTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAGCCAcccc                                                        >  1:315740/1‑93 (MQ=255)

                                  gTATTCCTGATACACCGTGTTGCGCATTTCGTGGCAGCTAATGCAGAACTCTTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAGCCACCCCa                                                       <  1:3926843/93‑1 (MQ=255)

                                   tATTCCTGATACACCGTGTTGCGCATTTCGTGGCAGCTAATGCAGAACTCTTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAGCCACCCCag                                                      >  2:2113389/1‑93 (MQ=255)

                                    aTTCCTGATACACCGTGTTGCGCATTTCGTGGCAGCTAATGCAGAACTCTTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAGCCACCCCaga                                                     >  1:3347206/1‑93 (MQ=255)

                                    aTTCCTGATACACCGTGTTGCGCATTTCGTGGCAGCTAATGCAGAACTCTTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAGCCACCCCaga                                                     >  1:1565875/1‑93 (MQ=255)

                                     ttCCTGATACACCGTGTTGCGCATTTCGTGGCAGCTAATGCAGAACTCTTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAGCCACCCCagaa                                                    <  2:6399758/93‑1 (MQ=255)

                                     ttCCTGATACACCGTGTTGCGCATTTCGTGGCAGCTAATGCAGAACTCTTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAGCCACCCCagaa                                                    <  2:4226238/93‑1 (MQ=255)

                                     ttCCTGATACACCGTGTTGCGCATTTCGTGGCAGCTAATGCAGAACTCTTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAGCCACCCCagaa                                                    >  2:6236529/1‑93 (MQ=255)

                                     ttCCTGATACACCGTGTTGCGCATTTCGTGGCAGCTAATGCAGAACTCTTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAGCCACCCCagaa                                                    >  1:5568941/1‑93 (MQ=255)

                                     ttCCTGATACACCGTGTTGCGCATTTCGTGGCAGCTAATGCAGAACTCTTCGGCATTGGCTGTTTCCATCCCGGTGTTAAAGCCACCCCagaa                                                    >  1:6363135/1‑93 (MQ=255)

                                        cTGATACACCGTGTTGCGCATTTCGTGGCAGCTAATGCAGAACTCTTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAGCCACCCCAGAAGAc                                                 <  1:7687786/93‑1 (MQ=255)

                                         tGATACACCGTGTTGCGCATTTCGTGGCAGCTAATGCAGAACTCTTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAGCCACCCCAGAAGACg                                                >  2:4584366/1‑93 (MQ=255)

                                          gATACACCGTGTTGCGCATTTCGTGGCAGCTAATGCAGAACTCTTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAGCCACCCCAGAAGACGa                                               >  2:7606350/1‑93 (MQ=255)

                                          gATACACCGTGTTGCGCATTTCGTGGCAGCTAATGCAGAACTCTTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAGCCACCCCAGAAGACGa                                               <  1:5889504/93‑1 (MQ=255)

                                           aTACACCGTGTTGCGCATTTCGTGGCAGCTAATGCAGAACTCTTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAGCCACCCCAGAAGACGAt                                              >  1:1282913/1‑93 (MQ=255)

                                            tACACCGTGTTGCGCATTTCGTGGCAGCTAATGCAGAACTCTTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAGCCACCCCAGAAGACGATg                                             >  2:908843/1‑93 (MQ=255)

                                               acCGTGTTGCGCATTTCGTGGCAGCTAATGCAGAACTCTTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAGCCACCCCAGAAGACGATgccg                                          >  1:2863291/1‑93 (MQ=255)

                                                ccGTGTTGCGCATTTCGTGGCAGCTAATGCAGAACTCTTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAGCCACCCCAGAAGACGATgccgc                                         >  2:2637104/1‑93 (MQ=255)

                                                ccGTGTTGCGCATTTCGTGGCAGCTAATGCAGAACTCTTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAGCCACCCCAGAAGACGATgccgc                                         <  2:1358542/93‑1 (MQ=255)

                                                 cGTGTTGCGCATTTCGTGGCAGCTAATGCAGAACTCTTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAGCCACCCCAGAAGACGATgccgcc                                        >  1:1936626/1‑93 (MQ=255)

                                                  gtgtTGCGCATTTCGTGGCAGCTAATGCAGAACTCTTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAGCCACCCCAGAAGACGATGCCGCca                                       >  2:2259171/1‑93 (MQ=255)

                                                  gtgtTGCGCATTTCGTGGCAGCTAATGCAGAACTCTTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAGCCACCCCAGAAGACGATGCCGCca                                       >  2:127550/1‑93 (MQ=255)

                                                  gtgtTGCGCATTTCGTGGCAGCTAATGCAGAACTCTTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAGCCACCCCAGAAGACGATGCCGCca                                       >  2:6959162/1‑93 (MQ=255)

                                                   tgtTGCGCATTTCGTGGCAGCTAATGCAGAACTCTTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAGCCACCCCAGAAGACGATGCCGCcaa                                      >  2:3242074/1‑93 (MQ=255)

                                                         gcATTTCGTGGCAGCTAATGCAGAACTCTTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAGCCACCCCAGAAGACGATGCCGCCAACAAAAc                                <  2:3053824/93‑1 (MQ=255)

                                                         gcATTTCGTGGCAGCTAATGCAGAACTCTTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAGCCACCCCAGAAGACGATGCCGCCAACAAAAc                                <  2:7055943/93‑1 (MQ=255)

                                                         gcATTTCGTGGCAGCTAATGCAGAACTCTTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAGCCACCCCAGAAGACGATGCCGCCAACAAAAc                                >  1:3368772/1‑93 (MQ=255)

                                                           aTTTCGTGGCAGCTAATGCAGAACTCTTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAGCCACCCCAGAAGACGATGCCGCCAACAAAACCg                              >  2:4999321/1‑93 (MQ=255)

                                                           aTTTCGTGGCAGCTAATGCAGAACTCTTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAGCCACCCCAGAAGACGATGCCGCCAACAAAACCg                              >  2:5147778/1‑93 (MQ=255)

                                                            tttCGTGGCAGCTAATGCAGAACTCTTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAGCCACCCCAGAAGACGATGCCGCCAACAAAACCGa                             >  2:1044259/1‑93 (MQ=255)

                                                             ttCGTGGCAGCTAATGCAGAACTCTTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAGCCACCCCAGAAGACGATGCCGCCAACAAAACCGAt                            <  1:5910579/93‑1 (MQ=255)

                                                              tCGTGGCAGCTAATGCAGAACTCTTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAGCCACCCCAGAAGACGATGCCGCCAACAAAACCGATc                           <  2:862554/93‑1 (MQ=255)

                                                                gTGGCAGCTAATGCAGAACTCTTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAGCCACCCCAGAAGACGATGCCGCCAACAAAACCGATCaa                         <  1:1776967/93‑1 (MQ=255)

                                                                gTGGCAGCTAATGCAGAACTCTTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAGCCACCCCAGAAGACGATGCCGCCAACAAAACCGATCaa                         >  2:6184520/1‑93 (MQ=255)

                                                                 tGGCAGCTAATGCAGAACTCTTCGGCATTTGCTTTTTCCATCCCGGTGTTAAAGCCACCCCAGAAGACGATGCCGCCAACAAAACCGATCAAc                        <  1:520554/93‑1 (MQ=255)

                                                                 tGGCAGCTAATGCAGAACTCTTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAGCCACCCCAGAAGACGATGCCGCCAACAAAACCGATCaca                        >  2:255291/1‑91 (MQ=255)

                                                                 tGGCAGCTAATGCAGAACTCTTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAGCCACCCCAGAAGACGATGCCGCCAACAAAACCGATCAAc                        <  2:4010261/93‑1 (MQ=255)

                                                                 tGGCAGCTAATGCAGAACTCTTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAGCCACCCCAGAAGACGATGCCGCCAACAAAACCGATCAAc                        <  1:6937668/93‑1 (MQ=255)

                                                                  ggCAGCTAATGCAGAACTCTTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAGCCACCCCAGAAGACGATGCCGCCAACAAAACCGATCAAca                       <  1:5775242/93‑1 (MQ=255)

                                                                   gCAGCTAATGCAGAACTCTTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAGCCACCCCAGAAGACGATGCCGCCAACAAAACCGATCAAcag                      >  1:7598732/1‑93 (MQ=255)

                                                                   gCAGCTAATGCAGAACTCTTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAGCCACCCCAGAAGACGATGCCGCCAACAAAACCGATCAAcag                      <  1:7510431/93‑1 (MQ=255)

                                                                   gCAGCTAATGCAGAACTCTTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAGCCACCCCAGAAGACGATGCCGCCAACAAAACCGATCAAcag                      <  1:2399684/93‑1 (MQ=255)

                                                                     aGCTAATGCAGAACTCTTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAGCCACCCCAGAAGACGATGCCGCCAACAAAACCGATCAAcagca                    <  1:4343617/93‑1 (MQ=255)

                                                                     aGCTAATGCAGAACTCTTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAGCCACCCCAGAAGACGATGCCGCCAACAAAACCGATCAAcagca                    <  2:4043741/93‑1 (MQ=255)

                                                                     aGCTAATGCAGAACTCTTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAGCCACCCCAGAAGACGATGCCGCCAACAAAACCGATCAAcagca                    <  1:6188804/93‑1 (MQ=255)

                                                                       cTAATGCAGAACTCTTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAGCCACCCCAGAAGACGATGCCGCCAACAAAACCGATCAACagcagc                  <  2:7755002/93‑1 (MQ=255)

                                                                        tAATGCAGAACTCTTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAGCCACCCCAGAAGACGATGCCGCCAACAAAACCGATCAACAGCAGCg                 >  2:5966027/1‑93 (MQ=255)

                                                                        tAATGCAGAACTCTTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAGCCACCCCAGAAGACGATGCCGCCAACAAAACCGATCAACAGCAGCg                 >  1:7117610/1‑93 (MQ=255)

                                                                         aaTGCAGAACTCTTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAGCCACCCCAGAAGACGATGCCGCCAACAAAACCGATCAACAGCAGCGt                <  1:7876439/93‑1 (MQ=255)

                                                                         aaTGCAGAACTCTTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAGCCACCCCAGAAGACGATGCCGCCAACAAAACCGATCAACAGCAGCGt                <  1:2099993/93‑1 (MQ=255)

                                                                           tGCAGAACTCTTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAGCCACCCCAGAAGACGATGCCGCCAACAAAACCGATCAACAGCAGCGTcc              >  2:3338740/1‑93 (MQ=255)

                                                                            gCAGAACTCTTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAGCCACCCCAGAAGACGATGCCGCCAACAAAACCGATCAACAGCAGCGTccc             <  2:3593156/93‑1 (MQ=255)

                                                                              aGAACTCTTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAGCCACCCCAGAAGACGATGCCGCCAACAAAACCGATCAACAGCAGCGTCCCCa           <  1:4065022/93‑1 (MQ=255)

                                                                              aGAACTCTTCGGCATTGGCTTTTTCCATCCCGGTGGTAAAGCCACTCCAGAAGACGATGCCGCCAACAAACCCGATCAACGGCAGAGTCCCCa           >  1:4635701/1‑93 (MQ=255)

                                                                               gAACTCTTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAGCCACCCCAGAAGACGATGCCGCCAACAAAACCGATCAACAGCAGCGTCCCCAg          >  2:1769615/1‑93 (MQ=255)

                                                                               gAACTCTTCGGCATTAGCTTTTTCCATCCCGGTGTTAAAGCCACCCCAGAAGACGATGCCGCCAACAAAACCGATCAACAGCAGCGTCCCCAg          >  2:7484656/1‑93 (MQ=255)

                                                                                aaCTCTTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAGCCACCCCAGAAGACGATGCCGCCAACAAAACCGATCAACAGCAGCGTCCCCAgc         >  1:6508441/1‑93 (MQ=255)

                                                                                  ctctTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAGCCACCCCAGAAGACGATGCCGCCAACAAAACCGATCAACAGCAGCGTCCCCAgcgc       >  1:2990919/1‑93 (MQ=255)

                                                                                   tctTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAGCCACCCCAGAAGACGATGCCGCCAACAAAACCGATCAACAGCAGCGTCCCCAgcgca      >  2:6689264/1‑92 (MQ=255)

CGCCGCTACGGTTGTTGTAGTGCACGGAATCCATGTATTCCTGATACACCGTGTTGCGCATTTCGTGGCAGCTAATGCAGAACTCTTCGGTATTGGCTTTTTCCATCCCGGTGTTAAAGCCACCCCAGAAGACGATGCCGCCAACAAAACCGATCAACAGCAGCGTCCCCAGCGCCAGAC  >  NC_000913/2296033‑2296212

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 20 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

GGACGCCGCTACGGTTGTTGTAGTGCACGGAATCCATGTATTCCTGATACACCGTGTTGCGCATTTCGTGGCAGCTAATGCAGAACTCTTCGGTATTGGCTTTTTCCATCCCGGTGTTAAAGCCACCCCAGAAGACGATGCCGCCAACAAAACCGATCAACAGCAGCGTCCCCAGCGCCAGACGGCT  >  NC_000913/2296030‑2296216

GGACGCCGCTACGGTTGTTGTAGTGCACGGAATCCATGTATTCCTGATACACCGTGTTGCGCATTTCGTGGCAGCTAATGCAGAACTCTTCGGC                                                                                               >  SRR4302543.2037557/1‑94 (MQ=60)

  ACGCCGCTACGGTTGTTGTAGTGCACGGAATCCATGTATTCCTGATACACCGTGTTGCGCATTTCGTGGCAGCTAATGCAGAACTCTTCGGCAT                                                                                             >  SRR4302543.1636162/1‑94 (MQ=60)

  ACGCCGCTACGGTTGTTGTAGTGCACGGAATCCATGTATTCCTGATACACCGTGTTGCGCATTTCGTGGCAGCTAATGCAGAACTCTTCGGCAT                                                                                             <  SRR4302543.88371/94‑1 (MQ=60)

   CGCCGCTACGGTTGTTGTAGTGCACGGAATCCATGTATTCCTGATACACCGTGTTGCGCATTTCGTGGCAGCTAATGCAGAACTCTTCGGCATT                                                                                            >  SRR4302543.7323360/1‑94 (MQ=60)

    GCCGCTACGGTTGTTGTAGTGCACGGAATCCATGTATTCCTGATACACCGTGTTGCGCATTTCGTGGCAGCTAATGCAGAACTCTTCGGCATTG                                                                                           >  SRR4302543.1897530/1‑94 (MQ=60)

     CCGCTACGGTTGTTGTAGTGCACGGAATCCATGTATTCCTGATACACCGTGTTGCGCATTTCGTGGCAGCTAATGCAGAACTCTTCGGCATTGG                                                                                          <  SRR4302543.7449227/94‑1 (MQ=60)

      CGCTACGGTTGTTGTAGTGCACGGAATCCATGTATTCCTGATACACCGTGTTGCGCATTTCGTGGCAGCTAATGCAGAACTCTTCGGCATTGGT                                                                                         >  SRR4302543.7879469/1‑94 (MQ=60)

      CGCTACGGTTGTTGTAGTGCACGGAATCCATGTATTCCTGATACACCGTGTTGCGCATTTCGTGGCAGCTAATGCAGAACTCTTCGGCATTGGC                                                                                         <  SRR4302543.6639020/94‑1 (MQ=60)

      CGCTACGGTTGTTGTAGTGCACGGAATCCATGTATTCCTGATACACCGTGTTGCGCATTTCGTGGCAGCTAATGCAGAACTCTTCGGCATTGGC                                                                                         <  SRR4302543.1018257/94‑1 (MQ=60)

      CGCTACGGTTGTTGTAGTGCACGGAATCCATGTATTCCTGATACACCGTGTTGCGCATTTCGTGGCAGCTAATGCAGAACTCTTCGGCATTGGC                                                                                         >  SRR4302543.3789424/1‑94 (MQ=60)

       GCTACGGTTGTTGTAGTGCACGGAATCCATGTATTCCTGATACACCGTGTTGCGCATTTCGTGGCAGCTAATGCAGAACTCTTCGGCATTGGCT                                                                                        <  SRR4302543.1196252/94‑1 (MQ=60)

       GCTACGGTTGTTGTAGTGCACGGAATCCATGTATTCCTGATACACCGTGTTGCGCATTTCGTGGCAGCTAATGCAGAACTCTTCGGCATTGGCT                                                                                        >  SRR4302543.3238738/1‑94 (MQ=60)

       GCTACGGTTGTTGTAGTGCACGGAATCCATGTATTCCTGATACACCGTGTTGCGCATTTCGTGGCAGCTAATGCAGAACTCTTCGGCATTGGCT                                                                                        <  SRR4302543.5746728/94‑1 (MQ=60)

        CTACGGTTGTTGTAGTGCACGGAATCCATGTATTCCTGATACACCGTGTTGCGCATTTCGTGGCAGCTAATGCAGAACTCTTCGGCATTGGCTT                                                                                       >  SRR4302543.3165667/1‑94 (MQ=60)

        CTACGGTTGTTGTAGTGCACGGAATCCATGTATTCCTGATACACCGTGTTGCGCATTTCGTGGCAGCTAATGCAGAACTCTTCGGCATTGGCTT                                                                                       <  SRR4302543.339613/94‑1 (MQ=60)

        CTACGGTTGTTGTAGTGCACGGAATCCATGTATTCCTGATACACCGTGTTGCGCATTTCGTGGCAGCTAATGCAGAACTCTTCGGCATTGGCTT                                                                                       >  SRR4302543.5172311/1‑94 (MQ=60)

        CTACGGTTGTTGTAGTGCACGGAATCCATGTATTCCTGATACACCGTGTTGCGCATTTCGTGGCAGCTAATGCAGAACTCTTCGGCATTGGCTT                                                                                       >  SRR4302543.2318187/1‑94 (MQ=60)

        CTACGGTTGTTGTAGTGCACGGAATCCATGTATTCCTGATACACCGTGTTGCGCATTTCGTGGCAGCTAATGCAGAACTCTTCGGCATTGGCTT                                                                                       >  SRR4302543.5639524/1‑94 (MQ=60)

        CTACGGTTGTTGTAGTGCACGGAATCCATGTATTCCTGATACACCGTGTTGCGCATTTCGTGGCAGCTAATGCAGAACTCTTCGGCATTGGCTT                                                                                       >  SRR4302543.7060936/1‑94 (MQ=60)

        CTACGGTTGTTGTAGTGCACGGAATCCATGTATTCCTGATACACCGTGTTGCGCATTTCGTGGCAGCTAATGCAGAACTCTTCGGCATTGGCTT                                                                                       >  SRR4302543.7562457/1‑94 (MQ=60)

         TACGGTTGTTGTAGTGCACGGAATCCATGTATTCCTGATACACCGTGTTGCGCATTTCGTGGCAGCTAATGCAGAACTCTTCGGCATTGGCTTT                                                                                      >  SRR4302543.5779525/1‑94 (MQ=60)

         TACGGTTGTTGTAGTGCACGGAATCCATGTATTCCTGATACACCGTGTTGCGCATTTCGTGGCAGCTAATGCAGAACTCTTCGGCATTGGCTTT                                                                                      >  SRR4302543.6254194/1‑94 (MQ=60)

          ACGGTTGTTGTAGTGCACGGAATCCATGTATTCCTGATACACCGTGTTGCGCATTTCGTGGCAGCTAATGCAGAACTCTTCGGCATTGGCTTTT                                                                                     <  SRR4302543.1019507/94‑1 (MQ=60)

          ACGGTGGTAGTAGTGCACGGAATCCATGTATTCCTGATACACCGTGTTGCGCATTTCGTGGCAGCTATTGCAGAACTCTTCGGCATTGGCTTTT                                                                                     <  SRR4302543.1019506/94‑1 (MQ=60)

           CGGTTGTTGTAGTGCACGGAATCCATGTATTCCTGATACACCGTGTTGCGCATTTCGTGGCAGCTAATGCAGAACTCTTCGGCATTGGCTTTTT                                                                                    <  SRR4302543.2199027/94‑1 (MQ=60)

           CGGTTGTTGTAGTGCACGGAATCCATGTATTCCTGATACACCGTGTTGCGCATTTCGTGGCAGCTAATGCAGAACTCTTCGGCATTGGCTTTTT                                                                                    >  SRR4302543.1627519/1‑94 (MQ=60)

           CGGGTTTTGTAGTGCACGGAATCCATGTATTCCTGATACACCGTGTTGCGCATTTCGTGGCAGCTAATGCAGAACTCTTCGGCATTGGCTTTTT                                                                                    <  SRR4302543.2199028/94‑1 (MQ=60)

            TGTTGTTGTAGTGCACGGAATCCATGTATTCCTGATACACCGTGTTGCGCATTTCGTGGCAGCTAATGCAGAACTCTTCGGCATTGGCTTTTTC                                                                                   <  SRR4302543.6729486/94‑1 (MQ=60)

              TTGTTGTAGTGCACGGAATCCATGTATTCCTGATACACCGTGTTGCGCATTTCGTGGCAGCTAATGCAGAACTCTTCGGCATTGGCTTTTTCCA                                                                                 <  SRR4302543.6356666/94‑1 (MQ=60)

               TGTTGTAGTGCACGGAATCCATGTATTCCTGATACACCGTGTTGCGCATTTCGTGGCAGCTAATGCAGAACTCTTCGGCATTGGCTTTTTCCAT                                                                                >  SRR4302543.2183826/1‑94 (MQ=60)

               TGTTGTAGTGCACGGAATCCATGTATTCCTGATACACCGTGTTGCGCATTTCGTGGCAGCTAATGCAGAACTCTTCGGCATTGGCTTTTTCCAT                                                                                <  SRR4302543.6031305/94‑1 (MQ=60)

               TGTTGTAGTGCACGGAATCCATGTATTCCTGATACACCGTGTTGCGCATTTCGTGGCAGCTAATGCAGAACTCTTCGGCATTGGCTTTTTCCAT                                                                                >  SRR4302543.3130555/1‑94 (MQ=60)

                 TTGTAGTGCACGGAATCCATGTATTCCTGATACACCGTGTTGCGCATTTCGTGGCAGCTAATGCAGAACTCTTCGGCATTGGCTTTTTCCATCC                                                                              <  SRR4302543.1128291/94‑1 (MQ=60)

                  TGTAGTGCACGGAATCCATGTATTCCTGATACACCGTGTTGCGCATTTCGTGGCAGCTAATGCAGAACTCTTCGGCATTGGCTTTTTCCATCCC                                                                             >  SRR4302543.3819494/1‑94 (MQ=60)

                     AGTGCACGGAATCCATGTATTCCTGATACACCGTGTTGCGCATTTCGTGGCAGCTAATGCAGAACTCTTCGGCATTGGCTTTTTCCATCCCGGT                                                                          <  SRR4302543.5252266/94‑1 (MQ=60)

                      GTGCACGGAATCCATGTATTCCTGATACACCGTGTTGCGCATTTCGTGGCAGCTAATGCAGAACTCTTCGGCATTGGCTTTTTCCATCCCGGTG                                                                         >  SRR4302543.7130255/1‑94 (MQ=60)

                        TCACGGAGTCCATGTATTCCTGATTCACCGTGTTGCGCATTTCGTGGCAGCTAATGCAGAACTCTTCGGCATTGGCTTTTTCCATCCCGGTGTT                                                                       <  SRR4302543.4644893/94‑1 (MQ=60)

                           CGGAATCCATGTATTCCTGATACACCGTGTTGCGCATTTCGTGGCAGCTAATGCAGAACTCTTCGGCATTGGCTTTTTCCATCCCGGTGTTAAA                                                                    >  SRR4302543.7356125/1‑94 (MQ=60)

                            GGAATCCATGTATTCCTGATACACCGTGTTGCGCATTTCGTGGCAGCTAATGCAGAACTCTTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAG                                                                   >  SRR4302543.7941816/1‑94 (MQ=60)

                            GGAATCCATGTATTCCTGATACACCGTGTTGCGCATTTCGTGGCAGCTAATGCAGAACTCTTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAG                                                                   >  SRR4302543.6821647/1‑94 (MQ=60)

                            GGAATCCATGTATTCCTGATACACCGTGTTGCGCATTTCGTGGCAGCTAATGCAGAACTCTTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAG                                                                   >  SRR4302543.7941815/1‑94 (MQ=60)

                              AATCCATGTATTCCTGATACACCGTGTTGCGCATTTCGTGGCAGCTAATGCAGAACTCTTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAGCC                                                                 >  SRR4302543.4746265/1‑94 (MQ=60)

                               ATCCATGTATTCCTGATACACCGTGTTGCGCATTTCGTGGCAGCTAATGCAGAACTCTTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAGCCA                                                                >  SRR4302543.5210692/1‑94 (MQ=60)

                                 CCATGTATTCCTGATACACCGTGTTGCGCATTTCGTGGCAGCTCATGCAGCACTCTTCGGCCTTGGCTTTTTGCATCCCGGTGTTAACGCCATC                                                              >  SRR4302543.312166/1‑94 (MQ=60)

                                 CCATGTATTCCTGATACACCGTGTTGCGCATTTCGTGGCAGCTAATGCAGAACTCTTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAGCCACC                                                              >  SRR4302543.312167/1‑94 (MQ=60)

                                 CCATGTATTCCTGATACACCGTGTTGCGCATTTCGTGGCAGCTAATGCAGAACTCTTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAGCCACC                                                              <  SRR4302543.7360036/94‑1 (MQ=60)

                                 CCATGTATTCCTGATACACCGTGTTGCGCATTTCGTGGCAGCTAATGCAGAACTCTTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAGCCACC                                                              >  SRR4302543.2224599/1‑94 (MQ=60)

                                  CATGTATTCCTGATACACTGTGTTGCGCATTTCGTGGCAGCTAATGCAGAACTCTTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAGCCACCC                                                             >  SRR4302543.763452/1‑94 (MQ=60)

                                  CATGTATTCCTGATACACCGTGTTGCGCATTTCGTGGCAGCTAATGCAGAACTCTTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAGCCACCC                                                             <  SRR4302543.7473314/94‑1 (MQ=60)

                                  CATGTATTCCTGATACACCGTGTTGCGCATTTCGTGGCAGCTAATGCAGAACTCTTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAGCCACCC                                                             >  SRR4302543.217567/1‑94 (MQ=60)

                                  CATGTATTCCTGATACACCGTGTTGCGCATTTCGTGGCAGCTAATGCAGAACTCTTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAGCCACCC                                                             >  SRR4302543.4312600/1‑94 (MQ=60)

                                  CATGTATTCCTGATACACCGCGTTGCGCATTTCGTGGCAGCTAATGCAGAACTCTTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAGCCACCC                                                             >  SRR4302543.5894576/1‑94 (MQ=60)

                                   ATGTATTCCTGATACACCGTGTTGCGCATTTCGTGGCAGCTAATGCAGAACTCTTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAGCCACCCC                                                            >  SRR4302543.318592/1‑94 (MQ=60)

                                    TGTATTCCTGATACACCGTGTTGCGCATTTCGTGGCAGCTAATGCAGAACTCTTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAGCCACCCCA                                                           <  SRR4302543.6596362/94‑1 (MQ=60)

                                    TGTATTCCTGATACACCGTGTTGCGCATTTCGTGGCAGCTAATGCAGAACTCTTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAGCCACCCCA                                                           >  SRR4302543.6701155/1‑94 (MQ=60)

                                     GTATTCCTGATACACCGTGTTGCGCATTTCGTGGCAGCTAATGCAGAACTCTTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAGCCACCCCAG                                                          <  SRR4302543.3961501/94‑1 (MQ=60)

                                      TATTCCTGATACACCGTGTTGCGCATTTCGTGGCAGCTAATGCAGAACTCTTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAGCCACCCCAGA                                                         >  SRR4302543.1579861/1‑94 (MQ=60)

                                      TATTCCTGATACACCGTGTTGCGCATTTCGTGGCAGCTAATGCAGAACTCTTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAGCCACCCCAGA                                                         >  SRR4302543.3377344/1‑94 (MQ=60)

                                       ATTCCTGATACACCGTGTTGCGCATTTCGTGGCAGCTAATGCAGAACTCTTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAGCCACCCCAGAA                                                        <  SRR4302543.7741812/94‑1 (MQ=60)

                                       ATTCCTGATACACCGTGTTGCGCATTTCGTGGCAGCTAATGCAGAACTCTTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAGCCACCCCAGAA                                                        <  SRR4302543.1379267/94‑1 (MQ=60)

                                       ATTCCTGATACACCGTGTTGCGCATTTCGTGGCAGCTAATGCAGAACTCTTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAGCCACCCCAGAA                                                        >  SRR4302543.5619611/1‑94 (MQ=60)

                                       ATTCCTGATACACCGTGTTGCGCATTTCGTGGCAGCTAATGCAGAACTCTTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAGCCACCCCAGAA                                                        <  SRR4302543.4908977/94‑1 (MQ=60)

                                       ATTCCTGATACACCGTGTTGCGCATTTCGTGGCAGCTAATGCAGAACTCTTCGGCATTGGCTGTTTCCATCCCGGTGTTAAAGCCACCCCAGAA                                                        >  SRR4302543.6422970/1‑94 (MQ=60)

                                        TTCCTGATACACCGTGTTGCGCATTTCGTGGCAGCTAATGCAGCACTCTTCGGCATTGGCTTTTTCCATCCCTGTGTTAAAGCCACCCCAGACG                                                       >  SRR4302543.2707543/1‑94 (MQ=60)

                                         TCCTGATACACCGTGTTGCGCATTTCGTGGCAGCTAATGCAGAACTCTTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAGCCACCCCAGAAGA                                                      <  SRR4302543.5173557/94‑1 (MQ=60)

                                         TCCTGATACACCGTGTTGCGCATTTCGTGGCAGCTAATGCAGAACTCTTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAGCCACCCCAGAAGA                                                      <  SRR4302543.1940738/94‑1 (MQ=60)

                                          CCTGATACACCGTGTTGCGCATTTCGTGGCAGCTAATGCAGAACTCTTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAGCCACCCCAGAAGAC                                                     >  SRR4302543.5363400/1‑94 (MQ=60)

                                          CCTGATACACCGTGTTGCGCATTTCGTGGCAGCTAATGCAGAACTCTTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAGCCACCCCAGAAGAC                                                     >  SRR4302543.654144/1‑94 (MQ=60)

                                          CCTGATACACCGTGTTGCGCATTTCGTGGCAGCTAATGCAGAACTCTTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAGCCACCCCAGAAGAC                                                     <  SRR4302543.7001264/94‑1 (MQ=60)

                                           CTGATACACCGTGTTGCGCATTTCGTGGCAGCTAATGCAGAACTCTTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAGCCACCCCAGAAGACG                                                    <  SRR4302543.5616193/94‑1 (MQ=60)

                                           CTGATACACCGTGTTGCGCATTTCGTGGCAGCTAATGCAGAACTCTTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAGCCACCCCAGAAGACG                                                    <  SRR4302543.7760585/94‑1 (MQ=60)

                                            TGATACACCGTGTTGCGCATTTCGTGGCAGCTAATGCAGAACTCTTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAGCCACCCCAGAAGACGA                                                   >  SRR4302543.2007865/1‑94 (MQ=60)

                                            TGATACACCGTGTTGCGCATTTCGTGGCAGCTAATGCAGAACTCTTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAGCCACCCCAGAAGACGA                                                   >  SRR4302543.4004804/1‑94 (MQ=60)

                                             GATACACCGTGTTGCGCATTTCGTGGCAGCTAATGCAGAACTCTTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAGCCACCCCAGAAGACGAT                                                  <  SRR4302543.2299145/94‑1 (MQ=60)

                                             GATACACCGTGTTGCGCATTTCGTGGCAGCTAATGCAGAACTCTTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAGCCACCCCAGAAGACGAT                                                  <  SRR4302543.5943195/94‑1 (MQ=60)

                                             GATACACCGTGTTGCGCATTTCGTGGCAGCTAATGCAGAACTCTTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAGCCACCCCAGAAGACGAT                                                  >  SRR4302543.1294352/1‑94 (MQ=60)

                                              ATACACCGTGTTGCGCATTTCGTGGCAGCTAATGCAGAACTCTTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAGCCACCCCAGAAGACGATG                                                 <  SRR4302543.3781295/94‑1 (MQ=60)

                                                 CACCGTGTTGCGCATTTCGTGGCAGCTAATGCAGAACTCTTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAGCCACCCCAGAAGACGATGCCG                                              >  SRR4302543.2889395/1‑94 (MQ=60)

                                                 CACCGTGTTGCGCATTTCGTGGCAGCTAATGCAGAACTCTTCGGCATTGGCTTTTTCCATCCCCGTGTTAAAGCCACCCCAGAAGACGATGGCG                                              >  SRR4302543.3805766/1‑94 (MQ=60)

                                                   CCGTGTTGCGCATTTCGTGGCAGCTAATGCAGAACTCTTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAGCCACCCCAGAAGACGATGCCGCC                                            >  SRR4302543.1954034/1‑94 (MQ=60)

                                                   CCGTGTTGCGCATTTCGTGGCAGCTAATGCAGAACTCTTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAGCCACCCCAGAAGACGATGCCGCC                                            <  SRR4302543.5178231/94‑1 (MQ=60)

                                                    CGTGTTGCGCATTTCGTGGCAGCTAATGCAGAACTCTTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAGCCACCCCAGAAGACGATGCCGCCA                                           <  SRR4302543.2158678/94‑1 (MQ=60)

                                                      TGTTGCGCATTTCGTGGCAGCTAATGCAGAACTCTTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAGCCACCCCAGAAGACGATGCCGCCAAC                                         >  SRR4302543.5846791/1‑94 (MQ=60)

                                                       GTTGCGCATTTCGTGGCAGCTAATGCAGAACTCTTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAGCCACCCCAGAAGACGATGCCGCCAACA                                        >  SRR4302543.7313944/1‑94 (MQ=60)

                                                         TGCGCATTTCGTGGCAGCTAATGCAGAACTCTTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAGCCACCCCAGAAGACGATGCCGCCAACAAA                                      <  SRR4302543.3038546/94‑1 (MQ=60)

                                                           CGCATTTCGTGGCAGCTAATGCAGAACTCTTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAGCCACCCCAGAAGACGATGCCGCCAACAAAAC                                    >  SRR4302543.3399034/1‑94 (MQ=60)

                                                            GCATTTCGTGGCAGCTAATGCAGAACTCTTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAGCCACCCCAGAAGACGATGCCGCCAACAAAACC                                   >  SRR4302543.1276313/1‑94 (MQ=60)

                                                            GCATTTCGTGGCAGCTAATGCAGAACTCTTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAGCCACCCCAGAAGACGATGCCGCCAACAAAACC                                   >  SRR4302543.1802131/1‑94 (MQ=60)

                                                               TTTCGTGGCAGCTAATGCAGAACTCTTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAGCCACCCCAGAAGACGATGCCGCCAACAAAACCGAT                                <  SRR4302543.6348430/94‑1 (MQ=60)

                                                                TTCGTGGCAGCTAATGCAGAACTCTTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAGCCACCCCAGAAGACGATGCCGCCAACAAAACCGATC                               <  SRR4302543.5964553/94‑1 (MQ=60)

                                                                   GTGGCAGCTAATGCAGAACTCTTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAGCCACCCCAGAAGACGATGCCGCCAACAAAACCGATCAAC                            >  SRR4302543.2062291/1‑94 (MQ=60)

                                                                   GTGGCAGCTAATGCAGAACTCTTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAGCCACCCCAGAAGACGATGCCGCCAACAAAACCGATCAAC                            <  SRR4302543.1792841/94‑1 (MQ=60)

                                                                    TGGCAGCTAATGCAGAACTCTTCGGCATTTGCTTTTTCCATCCCGGTGTTAAAGCCACCCCAGAAGACGATGCCGCCAACAAAACCGATCAACA                           <  SRR4302543.525385/94‑1 (MQ=60)

                                                                    TGGCAGCTAATGCAGAACTCTTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAGCCACCCCAGAAGACGATGCCGCCAACAAAACCGATCAACA                           >  SRR4302543.5962980/1‑94 (MQ=60)

                                                                    TGGCAGCTAATGCAGAACTCTTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAGCCACCCCAGAAGACGATGCCGCCAACAAAACCGATCAACA                           <  SRR4302543.7002926/94‑1 (MQ=60)

                                                                     GGCAGCTAATGCAGAACTCTTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAGCCACCCCAGAAGACGATGCCGCCAACAAAACCGATCAACAG                          >  SRR4302543.7670897/1‑94 (MQ=60)

                                                                     GGCAGCTAATGCAGAACTCTTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAGCCACCCCAGAAGACGATGCCGCCAACAAAACCGATCAACAG                          <  SRR4302543.5827815/94‑1 (MQ=60)

                                                                     GGCAGCTAATGCAGAACTCTTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAGCCACCCCAGAAGACGATGCCGCCAACAAAACCGATCAACAG                          <  SRR4302543.3221039/94‑1 (MQ=60)

                                                                      GCAGCTAATGCAGAACTCTTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAGCCACCCCAGAAGACGATGCCGCCAACAAAACCGATCAACAGC                         <  SRR4302543.7582186/94‑1 (MQ=60)

                                                                      GCAGCTAATGCAGAACTCTTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAGCCACCCCAGAAGACGATGCCGCCAACAAAACCGATCAACAGC                         <  SRR4302543.2421386/94‑1 (MQ=60)

                                                                       CAGCTAATGCAGAACTCTTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAGCCACCCCAGAAGACGATGCCGCCAACAAAACCGATCAACAGCA                        <  SRR4302543.7015443/94‑1 (MQ=60)

                                                                        AGCTAATGCAGAACTCTTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAGCCACCCCAGAAGACGATGCCGCCAACAAAACCGATCAACAGCAG                       <  SRR4302543.7770876/94‑1 (MQ=60)

                                                                        AGCTAATGCAGAACTCTTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAGCCACCCCAGAAGACGATGCCGCCAACAAAACCGATCAACAGCAG                       <  SRR4302543.6247274/94‑1 (MQ=60)

                                                                        AGCTAATGCAGAACTCTTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAGCCACCCCAGAAGACGATGCCGCCAACAAAACCGATCAACAGCAG                       <  SRR4302543.2570329/94‑1 (MQ=60)

                                                                        AGCTAATGCAGAACTCTTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAGCCACCCCAGAAGACGATGCCGCCAACAAAACCGATCAACAGCAG                       <  SRR4302543.4383010/94‑1 (MQ=60)

                                                                          CTAATGCAGAACTCTTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAGCCACCCCAGAAGACGATGCCGCCAACAAAACCGATCAACAGCAGCG                     >  SRR4302543.7186754/1‑94 (MQ=60)

                                                                           TAATGCAGAACTCTTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAGCCACCCCAGAAGACGATGCCGCCAACAAAACCGATCAACAGCAGCGT                    >  SRR4302543.3175850/1‑94 (MQ=60)

                                                                            AATGCAGAACTCTTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAGCCACCCCAGAAGACGATGCCGCCAACAAAACCGATCAACAGCAGCGTC                   <  SRR4302543.2118781/94‑1 (MQ=60)

                                                                            AATGCAGAACTCTTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAGCCACCCCAGAAGACGATGCCGCCAACAAAACCGATCAACAGCAGCGTC                   <  SRR4302543.7950580/94‑1 (MQ=60)

                                                                             ATGCAGAACTCTTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAGCCACCCCAGAAGACGATGCCGCCAACAAAACCGATCAACAGCAGCGTCC                  >  SRR4302543.1720883/1‑94 (MQ=60)

                                                                             ATGCAGAACTCTTCGGCATTGGCTTTTTCCATCCCGGCGTTAAAGCCACCCCAGAAGACGATGCCGCCAACAAAACCGATCAACAGCAGCGTCC                  >  SRR4302543.2341474/1‑94 (MQ=60)

                                                                               GCAGAACTCTTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAGCCACCCCAGAAGACGATGCCGCCAACAAAACCGATCAACAGCAGCGTCCCC                >  SRR4302543.6491012/1‑94 (MQ=60)

                                                                                CAGAACTCTTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAGCCACCCCAGAAGACGATGCCGCCAACAAAACCGATCAACAGCAGCGTCCCCA               >  SRR4302543.4677854/1‑94 (MQ=60)

                                                                                CAGAACTCTTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAGCCACCCCAGAAGACGATGCCGCCAACAAAACCGATCAACAGCAGCGTCCCCA               >  SRR4302543.1057143/1‑94 (MQ=60)

                                                                                CAGAACTCTTCGGCATTGGCTTTTTCCATCCCGGTGGTAAAGCCACTCCAGAAGACGATGCCGCCAACAAACCCGATCAACGGCAGAGTCCCCA               >  SRR4302543.4677852/1‑94 (MQ=60)

                                                                                 AGAACTCTTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAGCCACCCCAGAAGACGATGCCGCCAACAAAACCGATCAACAGCAGCGTCCCCAG              >  SRR4302543.2900484/1‑94 (MQ=60)

                                                                                 AGAACTCTTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAGCCACCCCAGAAGACGATGCCGCCAACAAAACCGATCAACAGCAGCGTCCCCAG              <  SRR4302543.4101430/94‑1 (MQ=60)

                                                                                  GAACTCTTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAGCCACCCCAGAAGACGATGCCGCCAACAAAACCGATCAACAGCAGCGTCCCCAGC             >  SRR4302543.6569746/1‑94 (MQ=60)

                                                                                   AACTCTTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAGCCACCCCAGAAGACGATGCCGCCAACAAAACCGATCAACAGCAGCGTCCCCAGCG            >  SRR4302543.1641499/1‑94 (MQ=60)

                                                                                   AACTCTTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAGCCACCCCAGAAGACGATGCCGCCAACAAAACCGATCAACAGCAGCGTCCCCAGCG            >  SRR4302543.4547493/1‑94 (MQ=60)

                                                                                    ACTCTTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAGCCACCCCAGAAGACGATGCCGCCAACAAAACCGATCAACAGCAGCGTCCCCAGCGC           >  SRR4302543.3018073/1‑94 (MQ=60)

                                                                                      TCTTCGGCATTGGCTTTTTCCATCCCGGTGTTAAAGCCACCCCAGAAGACGATGCCGCCAACAAAACCGATCAACAGCAGCGTCCCCAGCGCCA         >  SRR4302543.6397560/1‑94 (MQ=60)

                                                                                            GCATTGGCTTTTTCCATCCCGGTGTTAAAGCCACCCCAGAAGACGATGCCGCCAACAAAACCGATCAACAGCAGCGTCCCCAGCGCCAGACGGC   >  SRR4302543.2046098/1‑94 (MQ=60)

                                                                                             CATTGGCTTTTTCCATCCCGGTGTTAAAGCCACCCCAGAAGACGATGCCGCCAACAAAACCGATCAACAGCAGCGTCCCCAGCGCCAGACGGCT  >  SRR4302543.7535070/1‑94 (MQ=60)

                                                                                             CATTGGCTTTTTCCATCCCGGTGTTAAAGCCACCCCAGAAGACGATGCCGCCAACAAAACCGATCAACAGCAGCGTCCCCAGCGCCAGACGGCT  <  SRR4302543.2049930/94‑1 (MQ=60)

GGACGCCGCTACGGTTGTTGTAGTGCACGGAATCCATGTATTCCTGATACACCGTGTTGCGCATTTCGTGGCAGCTAATGCAGAACTCTTCGGTATTGGCTTTTTCCATCCCGGTGTTAAAGCCACCCCAGAAGACGATGCCGCCAACAAAACCGATCAACAGCAGCGTCCCCAGCGCCAGACGGCT  >  NC_000913/2296030‑2296216

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 5 ≤` `ATCG/ATCG` `< 25 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`