Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I1 R1
|
1696 |
279.3 |
15874187 |
97.8% |
15524954 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
2,311,335 |
(T)5→4 |
intergenic (‑566/‑173) |
ompC ← / → yojN |
outer membrane protein 1b (Ib;c)/putative 2‑component sensor protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 2,311,331 | 0 | T | . | 99.6%
| 1112.8
/ ‑3.0
| 244 | intergenic (‑562/‑177) | ompC/yojN | outer membrane protein 1b (Ib;c)/putative 2‑component sensor protein |
| Reads supporting (aligned to +/- strand): ref base T (1/0); new base . (133/110); total (134/110) |
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.56e-01 |
Only 100 of 262 total aligned reads displayed.
AAAACTATAACGCTTGTTAACTATTTCACAAATAATTAACATCCGCATAATTTCCAGCAATCTTTGTTTATTTGCAATTATTTTTGTTGGGCTTTTTGTAGGTTATTTGTACAGCAAAATGGCGCTTGTACATCTATTTCCCCCAATGCAGGATGATAAATATCACGGGAGAATAGAGAAT > NC_000913/2311239‑2311419
|
aaaaCTATAACGCTTGTTAACTATTTCACAAATAATTAACATCCGCATAATTTCCAGCAATCTTTGTTTATTTGCAATTATTTTTGTTGGGCt > 2:3369911/1‑93 (MQ=255)
aaaCTATAACGCTTGTTAACTATTTCACAAATAATTAACATCCGCATAATTTCCAGCAATCTTTGTTTATTTGCAATTATTTTTGTTGGGCtt > 2:2080371/1‑93 (MQ=255)
aaCTATAACGCTTGTTAACTATTTCACAAATAATTAACATCCGCATAATTTCCAGCAATCTTTGTTTATTTGCAATTATTTTTGTTGGGCttt < 1:3137681/93‑1 (MQ=255)
cTATAACGCTTGTTAACTATTACACAAATAATTAACATCCGCATAATTTCCAGCAATCTTTGTTTATTTGCAATTATTTTTGTTGGGCttttg < 1:468989/93‑2 (MQ=255)
tataACGCTTGTTAACTATTTCACAAATAATTAACATCCGCATAATTTCCAGCAATCTTTGTTTATTTGCAATTATTTTTGTTGGGCttttgt > 2:512827/1‑91 (MQ=255)
ataACGCTTGTTAACTATTTCACAAATAATTAACATCCGCATAATTTCCAGCAATCTTTGTTTATTTGCAATTATTTTTGTTGGGCttttgta > 2:2659235/1‑90 (MQ=255)
ataACGCTTGTTAACTATTTCACAAATAATTAACATCCGCATAATTTCCAGCAATCTTTGTTTATTTGCAATTATTTTTGTTGGGCttttgta < 2:6499155/93‑4 (MQ=255)
ataACGCTTGTTAACTATTTCACAAATAATTAACATCCGCATAATTTCCAGCAATCTTTGTTTATTTCCATTTATTTTTGTTGGGCttttgta > 2:7319974/1‑90 (MQ=255)
taACGCTTGTTAACTATTTCACAAATAATTAACATCCGCATAATTTCCAGCAATCTTTGTTTATTTGCAATTATTTTTGTTGGGCttttgtag > 2:3913362/1‑89 (MQ=255)
taACGCTTGTTAACTATTTCACAAATAATTAACATCCGCATAATTTCCAGCAATCTTTGTTTATTTGCAATTATTTTTGTTGGGCttttgtag > 2:5334396/1‑89 (MQ=255)
aaCGCTTGTTAACTATTTCACAAATAATTAACATCCGCATAATTTCCAGCAATCTTTGTTTATTTGCAATTATTTTTGTTGGGC‑TTTTGTAgg > 2:6218951/1‑93 (MQ=255)
aaCGCTTGTTAACTATTTCACAAATAATTAACATCCGCATAATTTCCAGCAATCTTTGTTTATTTGCAATTATTTTTGTTGGGC‑TTTTGTAgg < 2:5394181/93‑1 (MQ=255)
cGCTTGTTAACTATTTCACAAATAATTAACATCCGCATAATTTCCAGCAATCTTTGCTTATTTGCAATTATTTTTGTTGGGC‑TTTTGTAGGtt > 1:7348786/1‑93 (MQ=255)
gCTTGTTAACTATTTCACAAATAATTAACATCCGCATAATTTCCAGCAATCTTTGTTTATTTGCAATTATTTTTGTTGGGC‑TTTTGTAGGTTa > 1:3631232/1‑93 (MQ=255)
cTTGTTAACTATTTCACAAATAATTAACATCCGCATAATTTCCAGCAATCTTTGTTTATTTGCAATTATTTTTGTTGGGC‑TTTTGTAGGTTAt < 2:3981681/93‑1 (MQ=255)
tGTTAACTATTTCACAAATAATTAACATCCGCATAATTTCCAGCAATCTTTGTTTATTTGCAATTATTTTTGTTGGGC‑TTTTGTAGGTTAttt < 2:7891730/93‑1 (MQ=255)
gTTAACTATTTCACAAATAATTAACATCCGCATAATTTCCAGCAATCTTTGTTTATTTGCAATTATTTTTGTTGGGC‑TTTTGTAGGTTATTTg < 1:6053021/93‑1 (MQ=255)
gTTAACTATTTCACAAATAATTAACATCCGCATAATTTCCAGCAATCTTTGTTTATTTGCAATTATTTTTGTTGGGC‑TTTTGTAGGTTATTTg > 2:3137857/1‑93 (MQ=255)
ttAACTATTTCACAAATAATTAACATCCGCATAATTTCCAGCAATCTTTGTTTATTTGCAATTATTTTTGTTGGGC‑TTTTGTAGGTTATTTGt < 1:7793853/93‑1 (MQ=255)
ttAACTATTTCACAAATAATTAACATCCGCATAATTTCCAGCAATCTTTGTTTATTTGCAATTATTTTTGTTGGGC‑TTTTGTAGGTTATTTGt < 1:3426501/93‑1 (MQ=255)
ttAACTATTTCACAAATAATTAACATCCGCATAATTTCCAGCAATCTTTGTTTATTTGCAATTATTTTTGTTGGGC‑TTTTGTAGGTTATTTGt < 2:1235382/93‑1 (MQ=255)
ttAACTATTTCACAAATAATTAACATCCGCATAATTTCCAGCAATCTTTGTTTATTTGCAATTATTTTTGTTGGGC‑TTTTGTAGGTTATTTGt > 2:1795295/1‑93 (MQ=255)
ttAACTATTTCACAAATAATTAACATCCGCATAATTTCCAGCAATCTTTGTTTATTTGCAATTATTTTTGTTGGGC‑TTTTGTAGGTTATTTGt > 1:3804412/1‑93 (MQ=255)
tAACTATTTCACAAATAATTAACATCCGCATAATTTCCAGCAATCTTTGTTTATTTGCAATTATTTTTGTTGGGC‑TTTTGTAGGTTATTTGTa > 2:1810511/1‑93 (MQ=255)
aaCTATTTCACAAATAATTAACATCCGCATAATTTCCAGCAATCTTTGTTTATTTGCAATTATTTTTGTTGGGC‑TTTTGTAGGTTATTTGTAc > 1:943506/1‑93 (MQ=255)
aCTATTTCACAAATAATTAACATCCGCATAATTTCCAGCAATCTTTGTTTATTTGCAATTATTTTTGTTGGGC‑TTTTGTAGGTTATTTGTACa < 2:5703281/93‑1 (MQ=255)
cTATTTCACAAATAATTAACATCCGCATAATTTCCAGCAATCTTTGTTTATTTGCAATTATTTTTGTTGGGC‑TTTTGTAGGTTATTTGTACAg < 2:5482791/93‑1 (MQ=255)
tATTTCACAAATAATTAACATCCGCATAATTTCCAGCAATCTTTGTTTATTTGCAATTATTTTTGTTGGGC‑TTTTGTAGGTTATTTGTACAGc > 2:4667263/1‑93 (MQ=255)
ttCACAAATAATTAACATCCGCATAATTTCCAGCAATCTTTGTTTATTTGCAATTATTTTTGTTGGGC‑TTTTGTAGGTTATTTGTACAGCaaa > 2:1681185/1‑93 (MQ=255)
cacaAATAATTAACATCCGCATAATTTCCAGCAATCTTTGTTTATTTGCAATTATTTTTGTTGGGC‑TTTTGTAGGTTATTTGTACAGCAAAAt > 2:6356474/1‑93 (MQ=255)
caAATAATTAACATCCGCATAATTTCCAGCAATCTTTGTTTATTTGCAATTATTTTTGTTGGGC‑TTTTGTAGGTTATTTGTACAGCAAAATgg < 2:2679831/93‑1 (MQ=255)
ataatTAACATCCGCATAATTTCCAGCAATCTTTGTTTATTTGCAATTATTTTTGTTGGGC‑TTTTGTAGGTTATTTGTACAGCAAAATGgcgc > 2:774183/1‑93 (MQ=255)
ataatTAACATCCGCATAATTTCCAGCAATCTTTGTTTATTTGCAATTATTTTTGTTGGGC‑TTTTGTAGGTTATTTGTACAGCAAAATGgcgc > 2:1409478/1‑93 (MQ=255)
taatTAACATCCGCATAATTTCCAGCAATCTTTGTTTATTTGCAATTATTTTTGTTGGGC‑TTTTGTAGGTTATTTGTACAGCAAAATGGCGCt > 1:2556502/1‑93 (MQ=255)
taatTAACATCCGCATAATTTCCAGCAATCTTTGTTTATTTGCAATTATTTTTGTTGGGC‑TTTTGTAGGTTATTTGTACAGCAAAATGGCGCt < 2:5752510/93‑1 (MQ=255)
aatTAACATCCGCATAATTTCCAGCAATCTTTGTTTATTTGCAATTATTTTTGTTGGGC‑TTTTGTAGGTTATTTGTACAGCAAAATGGCGCtt < 2:3270584/93‑1 (MQ=255)
atTAACATCCGCATAATTTCCAGCAATCTTTGTTTATTTGCAATTATTTTTGTTGGGC‑TTTTGTAGGTTATTTGTACAGCAAAATGGCGCTTg < 2:879452/93‑1 (MQ=255)
atTAACATCCGCATAATTTCCAGCAATCTTTGTTTATTTGCAATTATTTTTGTTGGGC‑TTTTGTAGGTTATTTGTACAGCAAAATGGCGCTTg > 2:7470159/1‑93 (MQ=255)
tAACATCCGCATAATTTCCAGCAATCTTTGTTTATTTGCAATTATTTTTGTTGGGC‑TTTTGTAGGTTATTTGTACAGCAAAATGGCGCTTGTa > 1:5104302/1‑93 (MQ=255)
tAACATCCGCATAATTTCCAGCAATCTTTGTTTATTTGCAATTATTTTTGTTGGGC‑TTTTGTAGGTTATTTGTACAGCAAAATGGCGCTTGTa < 2:2160053/93‑1 (MQ=255)
aCATCCGCATAGTTTCCAGCAATCTTTGTTTATTTGCAGTTATTTTTGTTGGGC‑TTTTGTAGGTTATTTGTACAGCAAAATGGCGCTTGTACa < 2:7038093/93‑1 (MQ=255)
aCATCCGCATAATTTCCAGCAATCTTTGTTTATTTGCAATTATTTTTGTTGGGC‑TTTTGTAGGTTATTTGTACAGCAAAATGGCGCTTGTACa > 2:4921452/1‑93 (MQ=255)
aCATCCGCATAATTTCCAGCAATCTTTGTTTATTTGCAATTATTTTTGTTGGGC‑TTTTGTAGGTTATTTGTACAGCAAAATGGCGCTTGTACa < 2:3595713/93‑1 (MQ=255)
aCATCCGCATAATTTCCAGCAATCTTTGTTTATTTGCAATTATTTTTGTTGGGC‑TTTTGTAGGTTATTTGTACAGCAAAATGGCGCTTGTACa > 1:1957714/1‑93 (MQ=255)
tCCGCATAATTTCCAGCAATCTTTGTTTATTTGCAATTATTTTTGTTGGGC‑TTTTGTAGGTTATTTGTACAGCAAAATGGCGCTTGTACATCt > 2:5010982/1‑93 (MQ=255)
tCCGCATAATTTCCAGCAATCTTTGTTTATTTGCAATTATTTTTGTTGGGC‑TTTTGTAGGTTATTTGTACAGCAAAATGGCGCTTGTACATCt > 1:1625016/1‑93 (MQ=255)
tCCGCATAATTTCCAGCAATCTTTGTTTATTTGCAATTATTTTTGTTGGGC‑TTTTGTAGGTTATTTGTACAGCAAAATGGCGCTTGTACATCt > 2:6864193/1‑93 (MQ=255)
tCCGCATAATTTCCAGCAATCTTTGTTTATTTGCAATTATTTTTGTTGGGC‑TTTTGTAGGTTATTTGTACAGCAAAATGGCGCTTGTACATCt > 1:2734380/1‑93 (MQ=255)
ccGCATAATTTCCAGCAATCTTTGTTTATTTGCAATTATTTTTGTTGGGC‑TTTTGTAGGTTATTTGTACAGCAAAATGGCGCTTGTACATCTa < 1:651864/93‑1 (MQ=255)
ccGCATAATTTCCAGCAATCTTTGTTTATTTGCAATTATTTTTGTTGGGC‑TTTTGTAGGTTATTTGTACAGCAAAATGGCGCTTGTACATCTa < 1:6167414/93‑1 (MQ=255)
cGCATAATTTCCAGCAATCTTTGTTTATTTGCAATTATTTTTGTTGGGC‑TTTTGTAGGTTATTTGTACAGCAAAATGGCGCTTGTACATCTAt > 2:3056917/1‑93 (MQ=255)
gCATAATTTCCAGCAATCTTTGTTTATTTGCAATTATTTTTGTTGGGC‑TTTTGTAGGTTATTTGTACAGCAAAATGGCGCTTGTACATCTAtt < 1:6931014/93‑1 (MQ=255)
cATAATTTCCAGCAATCTTTGTTTATTTGCAATTATTTTTGTTGGGC‑TTTTGTAGGTTATTTGTACAGCAAAATGGCGCTTGTACATCTAttt > 1:1126692/1‑93 (MQ=255)
aTAATTTCCAGCAATCTTTGTTTATTTGCAATTATTTTTGTTGGGC‑TTTTGTAGGTTATTTGTACAGCAAAATGGCGCTTGTACATCTATTTc > 1:2287054/1‑93 (MQ=255)
aTAATTTCCAGCAATCTTTGTTTATTTGCAATTATTTTTGTTGGGC‑TTTTGTAGGTTATTTGTACAGCAAAATGGCGCTTGTACATCTATTTc > 1:5896054/1‑93 (MQ=255)
tAATTTCCAGCAATCTTTGTTTATTTGCAATTATTTTTGTTGGGC‑TTTTGTAGGTTATTTGTACAGCAAAATGGCGCTTGTACATCTATTTcc > 1:1045666/1‑93 (MQ=255)
aaTTTCCAGCAATCTTTGTTTATTTGCAATTATTTTTGTTGGGC‑TTTTGTAGGTTATTTGTACAGCAAAATGGCGCTTGTACATCTATTTccc > 1:1492499/1‑93 (MQ=255)
tCCAGCAATCTTTGTTTATTTGCAATTATTTTTGTTGGGC‑TTTTGTAGGTTATTTGTACAGCAAAATGGCGCTTGTACATCTATTTCCCCCaa < 2:7580519/93‑1 (MQ=255)
ccAGCAATCTTTGTTTATTTGCAATTATTTTTGTTGGGC‑TTTTGTAGGTTATTTGTACAGCAAAATGGCGCTTGTACATCTATTTCCCCCAAt > 1:4219307/1‑93 (MQ=255)
cAGCAATCTTTGTTTATTTGCAATTATTTTTGTTGGGC‑TTTTGTAGGTTTTTTGTACAGCAAAATGGCGCTTGTACATCTATTTCCCCCAATg > 2:55980/1‑93 (MQ=255)
cAGCAATCTTTGTTTATTTGCAATTATTTTTGTTGGGC‑TTTTGTAGGTTATTTGTACAGCAAAATGGCGCTTGTACATCTATTTCCCCCAATg > 1:7927602/1‑93 (MQ=255)
aGCAATCTTTGTTTATTTGCAATTATTTTTGTTGGGC‑TTTTGTAGGTTATTTGTACAGCAAAATGGCGCTTGTACATCTATTTCCCCCAATGc > 2:6132017/1‑93 (MQ=255)
cAATCTTTGTTTATTTGCAATTATTTTTGTTGGGC‑TTTTGTAGGTTATTTGTACAGCAAAATGGCGCTTGTACATCTATTTCCCCCAATGCAg < 1:4110938/93‑1 (MQ=255)
cAATCTTTGTTTATTTGCAATTATTTTTGTTGGGC‑TTTTGTAGGTTATTTGTACAGCAAAATGGCGCTTGTACATCTATTTCCCCCAATGCAg > 2:4128838/1‑93 (MQ=255)
aaTCTTTGTTTATTTGCAATTATTTTTGTTGGGC‑TTTTGTAGGTTATTTGTACAGCAAAATGGCGCTTGTACATCTATTTCCCCCAATGCAgg > 2:5636514/1‑93 (MQ=255)
aTCTTTGTTTATTTGCAATTATTTTTGTTGGGC‑TTTTGTAGGTTATTTGTACAGCAAAATGGCGCTTGTACATCTATTTCCCCCAATGCAGga < 1:7042824/93‑1 (MQ=255)
aTCTTTGTTTATTTGCAATTATTTTTGTTGGGC‑TTTTGTAGGTTATTTGTACAGCAAAATGGCGCTTGTACATCTATTTCCCCCAATGCAGga < 2:1620548/93‑1 (MQ=255)
tttGTTTATTTGCAATTATTTTTGTTGGGC‑TTTTGTAGGTTATTTGTACAGCAAAATGGCGCTTGTACATCTATTTCCCCCAATGCAGgatga > 1:7174412/1‑93 (MQ=255)
tttGTTTATTTGCAATTATTTTTGTTGGGC‑TTTTGTAGGTTATTTGTACAGCAAAATGGCGCTTGTACATCTATTTCCCCCAATGCAGgatga > 2:716235/1‑93 (MQ=255)
tGTTTATTTGCAATTATTTTTGTTGGGC‑TTTTGTAGGGTATTTGTACAGCAAAATGGCGCTTGTACATCTATTTCCCCCAATGCAGGATGATa > 1:4533170/1‑93 (MQ=255)
tttATTTGCAATTATTTTTGTTGGGC‑TTTTGTAGGTTATTTGTACAGCAAAATGGCGCTTGTACATCTATTTCCCCCAATGCAGGATGATaaa < 2:6743675/93‑1 (MQ=255)
tttATTTGCAATTATTTTTGTTGGGC‑TTTTGTAGGTTATTTGTACAGCAAAATGGCGCTTGTACATCTATTTCCCCCAATGCAGGATGATaaa < 1:6670934/93‑1 (MQ=255)
tATTTGCAATTATTTTTGTTGGGC‑TTTTGTAGGTTATTTGTACAGCAAAATGGCGCTTGTACATCTATTTCCCCCAATGCAGGATGATAAata > 2:1403933/1‑93 (MQ=255)
tATTTGCAATTATTTTTGTTGGGC‑TTTTGTAGGTTATTTGTACAGCAAAATGGCGCTTGTACATCTATTTCCCCCAATGCAGGATGATAAata < 2:6005165/93‑1 (MQ=255)
aTTTGCAATTATTTTTGTTGGGC‑TTTTGTAGGTTATTTGTACAGCAAAATGGCGCTTGTACATCTATTTCCCCCAATGCAGGATGATAAatat > 1:770453/1‑93 (MQ=255)
tttGCAATTATTTTTGTTGGGC‑TTTTGTAGGTTATTTGTACAGCAAAATGGCGCTTGTACATCTATTTCCCCCAATGCAGGATGATAAATATc < 1:5590780/93‑1 (MQ=255)
tttGCAATTATTTTTGTTGGGC‑TTTTGTAGGTTATTTGTACAGCAAAATGGCGCTTGTACATCTATTTCCCCCAATGCAGGATGATAAATATc > 1:6757173/1‑93 (MQ=255)
tttGCAATTATTTTTGTTGGGC‑TTTTGTAGGTTATTTGTACAGCAAAATGGCGCTTGTACATCTATTTCCCCCAATGCAGGATGATAAATATc < 1:5718932/93‑1 (MQ=255)
tttGCAATTATTTTTGTTGGGC‑TTTTGTAGGTTATTTGTACAGCAAAATGGCGCTTGTACATCTATTTCCCCCAATGCAGGATGATAAATATc < 1:3063294/93‑1 (MQ=255)
ttGCAATTATTTTTGTTGGGC‑TTTTGTAGGTTATTTGTACAGCAAAATGGCGCTTGTACATCTATTTCCCCCAATGCAGGATGATAAATATCa < 2:7242373/93‑1 (MQ=255)
gCAATTATTTTTGTTGGGC‑TTTTGTAGGTTATTTGTACAGCAAAATGGCGCTTGTACATCTATTTCCCCCAATGCAGGATGATAAATATCACg < 1:523472/93‑1 (MQ=255)
gCAATTATTTTTGTTGGGC‑TTTTGTAGGTTATTTGTACAGCAAAATGGCGCTTGTACATCTATTTCCCCCAATGCAGGATGATAAATATCACg > 1:4990254/1‑93 (MQ=255)
gCAATTATTTTTGTTGGGC‑TTTTGTAGGTTATTTGTACAGCAAAATGGCGCTTGTACATCTATTTCCCCCAATGCAGGATGATAAATATCACg < 1:6371602/93‑1 (MQ=255)
gCAATTATTTTTGTTGGGC‑TTTTGTAGGTTATTTGTACAGCAAAATGGCGCTTGTACATCTATTTCCCCCAATGCAGGATGATAAATATCACg < 2:7917266/93‑1 (MQ=255)
aaTTATTTTTGTTGGGC‑TTTTGAAGGTTATTTGTACAGCAAAATGGCGCTTGTACATCTATTTCCCCCAATGCAGGATGATAAATATCACggg > 1:6834024/1‑93 (MQ=255)
attattTTTGTTGGGC‑TTTTGTAGGTTATTTGTACAGCAAAATGGCGCTTGTACATCTATTTCCCCCAATGCAGGATGATAAATATCACGGga < 1:4841232/93‑1 (MQ=255)
attattTTTGTTGGGC‑TTTTGTAGGTTATTTGTACAGCAAAATGGCGCTTGTACATCTATTTCCCCCAATGCAGGATGATAAATATCACGGga < 1:3638847/93‑1 (MQ=255)
tattTTTGTTGGGC‑TTTTGTAGGTTATTTGTACAGCAAAATGGCGCTTGTACATCTATTTCCCCCAATGCAGGATGATAAATATCACGGgaga > 2:1690924/1‑93 (MQ=255)
attTTTGTTGGGC‑TTTTGTAGGTTATTTGTACAGCAAAATGGCGCTTGTACATCTATTTCCCCCAATGCAGGATGATAAATATCACGGGAGaa > 1:5784945/1‑93 (MQ=255)
attTTTGTTGGGC‑TTTTGTAGGTTATTTGTACAGCAAAATGGCGCTTGTACATCTATTTCCCCCAATGCAGGATGATAAATATCACGGGAGaa < 1:3349887/93‑1 (MQ=255)
attTTTGTTGGGC‑TTTTGTAGGTTATTTGTACAGCAAAATGGCGCTTGTACATCTATTTCCCCCAATGCAGGATGATAAATATCACGGGAGaa < 2:2352801/93‑1 (MQ=255)
tttttGTTGGGC‑TTTTGTAGGTTATTTGTACAGCAAAATGGCGCTTGTACATCTATTTCCCCCAATGCAGGATGATAAATATCACGGGAGAAt < 2:7442314/93‑1 (MQ=255)
ttttGTTGGGC‑TTTTGTAGGTTATTTGTACAGCAAAATGGCGCTTGTACATCTATTTCCCCCAATGCAGGATGATAAATATCACGGGAGAATa > 2:3689459/1‑93 (MQ=255)
ttttGTTGGGC‑TTTTGTAGGTTATTTGTACAGCAAAATGGCGCTTGTACATCTATTTCCCCCAATGCAGGATGATAAATATCACGGGAGAATa > 1:4722116/1‑93 (MQ=255)
tttGTTGGGC‑TTTTGTAGTTTATTTGTACAGCAAAATGGCGCTTGTACATCTATTTCCCCCAATGCAGGATGATAAATATCACGGGAGAATag < 2:6931100/93‑1 (MQ=255)
tttgGGC‑TTTTGTAGGTTATTTGTACAGCAAAATGGCGCTTGTACATCTATTTCCCCCAATGCAGGATGATAAATATCACGGGAGAATAgaga < 1:2248144/92‑1 (MQ=255)
gttgGGC‑TTTTGTAGGTTATTTGTACAGCAAAATGGCGCTTGTACATCTATTTCCCCCAATGCAGGATGATAAATATCACGGGAGAATAgaga > 1:6165339/1‑93 (MQ=255)
gttgGGC‑TTTTGTAGGTTATTTGTACAGCAAAATGGCGCTTGTACATCTATTTCCCCCAATGCAGGATGATAAATATCACGGGAGAATAgaga < 1:3714684/93‑1 (MQ=255)
gttgGGC‑TTTTGTAGGTTATTTGTACAGCAAAATGGCGCTTGTACATCTATTTCCCCCAATGCAGGATGATAAATATCACGGGAGAATAgaga < 2:4339464/93‑1 (MQ=255)
tgGGC‑TTTTGTAGGTTATTTGTACAGCAAAATGGCGCTTGTACATCTATTTCCCCCAATGCAGGATGATAAATATCACGGGAGAATAGAGAat < 2:6635008/93‑1 (MQ=255)
|
AAAACTATAACGCTTGTTAACTATTTCACAAATAATTAACATCCGCATAATTTCCAGCAATCTTTGTTTATTTGCAATTATTTTTGTTGGGCTTTTTGTAGGTTATTTGTACAGCAAAATGGCGCTTGTACATCTATTTCCCCCAATGCAGGATGATAAATATCACGGGAGAATAGAGAAT > NC_000913/2311239‑2311419
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
ACTATAACGCTTGTTAACTATTTCACAAATAATTAACATCCGCATAATTTCCAGCAATCTTTGTTTATTTGCAATTATTTTTGTTGGGCTTTTTGTAGGTTATTTGTACAGCAAAATGGCGCTTGTACATCTATTTCCCCCAATGCAGGATGATAAATATCACGGGAGAATAGAGAATCATCAATCA > NC_000913/2311242‑2311428
|
ACTATAACGCTTGTTAACTATTTCACAAATAATTAACATCCGCATAATTTCCAGCAATCTTTGTTTATTTGCAATTATTTTTGTTGGTCTTTTG < SRR4302543.5810097/94‑1 (MQ=60)
ACGCTTGTTAACTATTTCACAAATAATTAACATCCGCATAATTTCCAGCAATCTTTGTTTATTTGCAATTATTTTTGTTGGGC‑TTTTGTAGGTT < SRR4302543.5952215/94‑1 (MQ=60)
ACGCTTGTTAACTATTTCACAAATAATTAACATCCGCATAATTTCCAGCAATCTTTGCTTATTTGCAATTATTTTTGTTGGGC‑TTTTGTAGGTT > SRR4302543.7419479/1‑94 (MQ=60)
CGCTTGTTAACTATTTCACAAATAATTAACATCCGCATAATTTCCAGCAATCTTTGTTTATTTGCAATTATTTTTGTTGGGC‑TTTTGTAGGTTA > SRR4302543.3663203/1‑94 (MQ=60)
CGCTTGTTAACTATTTCACAAATAATTAACATCCGCATAATTTCCAGCAATCTTTGTTTATTTGCAATTATTTTTGTTGGGC‑TTTTGTAGGTTA > SRR4302543.3663204/1‑94 (MQ=60)
GCTTGTTAACTATTTCACAAATAATTAACATCCGCATAATTTCCAGCAATCTTTGTTTATTTGCAATTATTTTTGTTGGGC‑TTTTGTAGGTTAT > SRR4302543.5366680/1‑94 (MQ=60)
CTTGTTAACTATTTCACAAATAATTAACATCCGCATAATTTCCAGCAATCTTTGTTTATTTGCAATTATTTTTGTTGGGC‑TTTTGTAGGTTATT > SRR4302543.4968503/1‑94 (MQ=60)
TTGTTAACTATTTCACAAATAATTAACATCCGCATAATTTCCAGCAATCTTTGTTTATTTGCAATTATTTTTGTTGGGC‑TTTTGTAGGTTATTT > SRR4302543.5209186/1‑94 (MQ=60)
TGTTAACTATTTCACAAATAATTAACATCCGCATAATTTCCAGCAATCTTTGTTTATTTGCAATTATTTTTGTTGGGC‑TTTTGTAGGTTATTTG > SRR4302543.1293385/1‑94 (MQ=60)
GTTAACTATTTCACAAATAATTAACATCCGCATAATTTCCAGCAATCTTTGTTTATTTGCAATTATTTTTGTTGGGC‑TTTTGTAGGTTATTTGT < SRR4302543.6110320/94‑1 (MQ=60)
GTTAACTATTTCACAAATAATTAACATCCGCATAATTTCCAGCAATCTTTGTTTATTTGCAATTATTTTTGTTGGGC‑TTTTGTAGGTTATTTGT > SRR4302543.3837940/1‑94 (MQ=60)
TTAACTATTTCACAAATAATTAACATCCGCATAATTTCCAGCAATCTTTGTTTATTTGCAATTATTTTTGTTGGGC‑TTTTGTAGGTTATTTGTA < SRR4302543.3457161/94‑1 (MQ=60)
TTAACTATTTCACAAATAATTAACATCCGCATAATTTCCAGCAATCTTTGTTTATTTGCAATTATTTTTGTTGGGC‑TTTTGTAGGTTATTTGTA < SRR4302543.7867306/94‑1 (MQ=60)
TAACTATTTCACAAATAATTAACATCCGCATAATTTCCAGCAATCTTTGTTTATTTGCAATTATTTTTGTTGGGC‑TTTTGTAGGTTATTTGTAC < SRR4302543.4520800/94‑1 (MQ=60)
TAACTATTTCACAAATAATTAACATCCGCATAATTTCCAGCAATCTTTGTTTATTTGCAATTATTTTTGTTGGGC‑TTTTGTAGGTTATTTGTAC > SRR4302543.951750/1‑94 (MQ=60)
TATTTCACAAATAATTAACATCCGCATAATTTCCAGCAATCTTTGTTTATTTGCAATTATTTTTGTTGGGC‑TTTTGTAGGTTATTTGTACAGCA > SRR4302543.4752574/1‑94 (MQ=60)
TATTTCACAAATAATTAACATCCGCATAATTTCCAGCAATCTTTGTTTATTTGCAATTATTTTTGTTGGGC‑TTTTGTAGGTTATTTGTACAGCA > SRR4302543.6443728/1‑94 (MQ=60)
TTTCACAAATAATTAACATCCGCATAATTTCCAGCAATCTTTGTTTATTTGCAATTATTTTTGTTGGGC‑TTTTGTAGGTTATTTGTACAGCAAA > SRR4302543.3925534/1‑94 (MQ=60)
TTTCACAAATAATTAACATCCGCATAATTTCCAGCAATCTTTGTTTATTTGCAATTATTTTTGTTGGGC‑TTTTGTAGGTTATTTGTACAGCAAA > SRR4302543.6874971/1‑94 (MQ=60)
TTCACAAATAATTAACATCCGCATAATTTCCAGCAATCTTTGTTTATTTGCAATTATTTTTGTTGGGC‑TTTTGTAGGTTATTTGTACAGCAAAA > SRR4302543.2461848/1‑94 (MQ=60)
TCACAAATAATTAACATCCGCATAATTTCCAGCAATCTTTGTTTATTTGCAATTATTTTTGTTGGGC‑TTTTGTAGGTTATTTGTACAGCAAAAT > SRR4302543.50110/1‑94 (MQ=60)
TCACAAATAATTAACATCCGCATAATTTCCAGCAATCTTTGTTTATTTGCAATTATTTTTGTTGGGC‑TTTTGTAGGTTATTTGTACAGCAAAAT < SRR4302543.5945631/94‑1 (MQ=60)
AAATAATTAACATCCGCATAATTTCCAGCAATCTTTGTTTATTTGCAATTATTTTTGTTGGGC‑TTTTGTAGGTTATTTGTACAGCAAAATGGCG < SRR4302543.4600986/94‑1 (MQ=60)
AAATAATTAACATCCGCATAATTTCCAGCAATCTTTGTTTATTTGCAATTATTTTTGTTGGGC‑TTTTGTAGGTTATTTGTACAGCAAAATGGCG > SRR4302543.2874982/1‑94 (MQ=60)
ATAATTAACATCCGCATAATTTCCAGCAATCTTTGTTTATTTGCAATTATTTTTGTTGGGC‑TTTTGTAGGTTATTTGTACAGCAAAATGGCGCT > SRR4302543.2579877/1‑94 (MQ=60)
ATTAACATCCGCATAATTTCCAGCAATCTTTGTTTATTTGCAATTATTTTTGTTGGGC‑TTTTGTAGGTTATTTGTACAGCAAAATGGCGCTTGT > SRR4302543.5794308/1‑94 (MQ=60)
TTAACATCCGCATAATTTCCAGCAATCTTTGTTTATTTGCAATTATTTTTGTTGGGC‑TTTTGTAGGTTATTTGTACAGCAAAATGGCGCTTGTA > SRR4302543.5150498/1‑94 (MQ=60)
AACATCCGCATAATTTCCAGCAATCTTTGTTTATTTGCAATTATTTTTGTTGGGC‑TTTTGTAGGTTATTTGTACAGCAAAATGGCGCTTGTACA > SRR4302543.1975275/1‑94 (MQ=60)
ACATCCGCATAATTTCCAGCAATCTTTGTTTATTTGCAATTATTTTTGTTGGGC‑TTTTGTAGGTTATTTGTACAGCAAAATGGCGCTTGTACAT > SRR4302543.3623697/1‑94 (MQ=60)
ACATCCGCATAATTTCCAGCAATCTTTGTTTATTTGCAATTATTTTTGTTGGGC‑TTTTGTAGGTTATTTGTACAGCAAAATGGCGCTTGTACAT > SRR4302543.7917786/1‑94 (MQ=60)
CATCCGCATAATTTCCAGCAATCTTTGTTTATTTGCAATTATTTTTGTTGGGC‑TTTTGTAGGTTATTTGTACAGCAAAATGGCGCTTGTACATC < SRR4302543.4667136/94‑1 (MQ=60)
CATCCGCATAATTTCCAGCAATCTTTGTTTATTTGCAATTATTTTTGTTGGGC‑TTTTGTAGGTTATTTGTACAGCAAAATGGCGCTTGTACATC > SRR4302543.7570770/1‑94 (MQ=60)
CATCCGCATAATTTCCAGCAATCTTTGTTTATTTGCAATTATTTTTGTTGGGC‑TTTTGTAGGTTATTTGTACAGCAAAATGGCGCTTGTACATC > SRR4302543.3101859/1‑94 (MQ=60)
ATCCGCATAATTTCCAGCAATCTTTGTTTATTTGCAATTATTTTTGTTGGGC‑TTTTGTAGGTTATTTGTACAGCAAAATGGCGCTTGTACATCT > SRR4302543.601605/1‑94 (MQ=60)
ATCCGCATAATTTCCAGCAATCTTTGTTTATTTGCAATTATTTTTGTTGGGC‑TTTTGTAGGTTATTTGTACAGCAAAATGGCGCTTGTACATCT > SRR4302543.2759259/1‑94 (MQ=60)
ATCCGCATAATTTCCAGCAATCTTTGTTTATTTGCAATTATTTTTGTTGGGC‑TTTTGTAGGTTATTTGTACAGCAAAATGGCGCTTGTACATCT > SRR4302543.1639494/1‑94 (MQ=60)
CCGCATAATTTCCAGCAATCTTTGTTTATTTGCAATTATTTTTGTTGGGC‑TTTTGTAGGTTATTTGTACAGCAAAATGGCGCTTGTACATCTAT < SRR4302543.6225767/94‑1 (MQ=60)
CCGCATAATTTCCAGCAATCTTTGTTTATTTGCAATTATTTTTGTTGGGC‑TTTTGTAGGTTATTTGTACAGCAAAATGGCGCTTGTACATCTAT < SRR4302543.657835/94‑1 (MQ=60)
CCGCATAATTTCCAGCAATCTTTGTTTATTTGCAATTATTTTTGATGGGC‑TTTTGTAGGTTATTTGTACAGCAAAATGGCGCTTGTACATCTAT < SRR4302543.1391801/94‑1 (MQ=60)
CGCATAATTTCCAGCAATCTTTGTTTATTTGCAATTATTTTTGTTGGGC‑TTTTGTAGGTTATTTGTACAGCAAAATGGCGCTTGTACATCTATT > SRR4302543.3751949/1‑94 (MQ=60)
CGCATAATTTCCAGCAATCTTTGTTTATTTGCAATTATTTTTGTTGGGC‑TTTTGTAGGTTATTTGTACAGCAAAATGGCGCTTGTACATCTATT > SRR4302543.1647615/1‑94 (MQ=60)
CGCATAATTTCCAGCAATCTTTGTTTATTTGCAATTATTTTTGTTGGGC‑TTTTGTAGGTTATTTGTACAGCAAAATGGCGCTTGTACATCTATT > SRR4302543.6315576/1‑94 (MQ=60)
GCATAATTTCCAGCAATCTTTGTTTATTTGCAATTATTTTTGTTGGGC‑TTTTGTAGGTTATTTGTACAGCAAAATGGCGCTTGTACATCTATTT < SRR4302543.6996446/94‑1 (MQ=60)
GCATAATTTCCAGCAATCTTTGTTTATTTGCAATTATTTTTGTTGGGC‑TTTTGTAGGTTATTTGTACAGCAAAATGGCGCTTGTACATCTATTT > SRR4302543.1136914/1‑94 (MQ=60)
GCATAATTTCCAGCAATCTTTGTTTATTTGCAATTATTTTTGTTGGGC‑TTTTGTAGGTTATTTGTACAGCAAAATGGCGCTTGTACATCTATTT < SRR4302543.6996207/94‑1 (MQ=60)
CATAATTTCCAGCAATCTTTGTTTATTTGCAATTATTTTTGTTGGGC‑TTTTGTAGGTTATTTGTACAGCAAAATGGCGCTTGTACATCTATTTC > SRR4302543.5949827/1‑94 (MQ=60)
CATAATTTCCAGCAATCTTTGTTTATTTGCAATTATTTTTGTTGGGC‑TTTTGTAGGTTATTTGTACAGCAAAATGGCGCTTGTACATCTATTTC > SRR4302543.5181139/1‑94 (MQ=60)
CATAATTTCCAGCAATCTTTGTTTATTTGCAATTATTTTTGTTGGGC‑TTTTGTAGGTTATTTGTACAGCAAAATGGCGCTTGTACATCTATTTC > SRR4302543.2307939/1‑94 (MQ=60)
ATAATTTCCAGCAATCTTTGTTTATTTGCAATTATTTTTGTTGGGC‑TTTTGTAGGTTATTTGTACAGCAAAATGGCGCTTGTACATCTATTTCC > SRR4302543.3691829/1‑94 (MQ=60)
ATAATTTCCAGCAATCTTTGTTTATTTGCAATTATTTTTGTTGGGC‑TTTTGTAGGTTATTTGTACAGCAAAATGGCGCTTGTACATCTATTTCC > SRR4302543.5722061/1‑94 (MQ=60)
ATAATTTCCAGCAATCTTTGTTTATTTGCAATTATTTTTGTTGGGC‑TTTTGTAGGTTATTTGTACAGCAAAATGGCGCTTGTACATCTATTTCC > SRR4302543.7294563/1‑94 (MQ=60)
ATAATTTCCAGCAATCTTTGTTTATTTGCAATTATTTTTGTTGGGC‑TTTTGTAGGTTATTTGTACAGCAAAATGGCGCTTGTACATCTATTTCC > SRR4302543.1055016/1‑94 (MQ=60)
TAATTTCCAGCAATCTTTGTTTATTTGCAATTATTTTTGTTGGGC‑TTTTGTAGGTTATTTGTACAGCAAAATGGCGCTTGTACATCTATTTCCC > SRR4302543.1505928/1‑94 (MQ=60)
AATTTCCAGCAATCTTTGTTTATTTGCAATTATTTTTGTTGGGC‑TTTTGTAGGTTATTTGTACAGCAAAATGGCGCTTGTACATCTATTTCCCC > SRR4302543.369646/1‑94 (MQ=60)
ATTTCCAGCAATCTTTGTTTATTTGCAATTATTTTTGTTGGGC‑TTTTGTAGGTTATTTGTACAGCAAAATGGCGCTTGTACATCTATTTCCCCC > SRR4302543.6904879/1‑94 (MQ=60)
TCCAGCAATCTTTGTTTATTTGCAATTATTTTTGTTGGGC‑TTTTGTAGGTTATTTGTACAGCAAAATGGCGCTTGTACATCTATTTCCCCCAAT > SRR4302543.4257557/1‑94 (MQ=60)
CCAGCAATCTTTGTTTATTTGCAATTATTTTTGTTGGGC‑TTTTGTAGGTTATTTGTACAGCAAAATGGCGCTTGTACATCTATTTCCCCCAATG > SRR4302543.8002042/1‑94 (MQ=60)
CCAGCAATCTTTGTTTATTTGCAATTATTTTTGTTGGGC‑TTTTGTAGGTTATTTGTACAGCAAAATGGCGCTTGTACATCTATTTCCCCCAATG > SRR4302543.3440502/1‑94 (MQ=60)
CAATCTTTGTTTATTTGCAATTATTTTTGTTGGGC‑TTTTGTAGGTTATTTGTACAGCAAAATGGCGCTTGTACATCTATTTCCCCCAATGCAGG < SRR4302543.4148138/94‑1 (MQ=60)
CAATCTTTGTTTATTTGCAATTATTTTTGTTGGGC‑TTTTGTAGGTTATTTGTACAGCAAAATGGCGCTTGTACATCTATTTCCCCCAATGCAGG < SRR4302543.4147938/94‑1 (MQ=60)
CAATCTTTGTTTATTTGCAATTATTTTTGTTGGGC‑TTTTGTAGGTTATTTGTACAGCAAAATGGCGCTTGTACATCTATTTCCCCCAATGCAGG > SRR4302543.3141825/1‑94 (MQ=60)
ATCTTTGTTTATTTGCAATTATTTTTGTTGGGC‑TTTTGTAGGTTATTTGTACAGCAAAATGGCGCTTGTACATCTATTTCCCCCAATGCAGGAT < SRR4302543.7671872/94‑1 (MQ=60)
ATCTTTGTTTATTTGCAATTATTTTTGTTGGGC‑TTTTGTAGGTTATTTGTACAGCAAAATGGCGCTTGTACATCTATTTCCCCCAATGCAGGAT > SRR4302543.618939/1‑94 (MQ=60)
ATCTTTGTTTATTTGCAATTATTTTTGTTGGGC‑TTTTGTAGGTTATTTGTACAGCAAAATGGCGCTTGTACATCTATTTCCCCCAATGCAGGAT < SRR4302543.7110908/94‑1 (MQ=60)
TCTTTGTTTATTTGCAATTATTTTTGTTGGGC‑TTTTGTAGGTTATTTGTACAGCAAAATGGCGCTTGTACATCTATTTCCCCCAATGCAGGATG > SRR4302543.882174/1‑94 (MQ=60)
TCTTTGTTTATTTGCAATTATTTTTGTTGGGC‑TTTTGTAGGTTATTTGTACAGCAAAATGGCGCTTGTACATCTATTTCCCCCAATGCAGGATG < SRR4302543.6584414/94‑1 (MQ=60)
CTTTGTTTATTTGCAATTATTTTTGTTGGGC‑TTTTGTAGGTTATTTGTACAGCAAAATGGCGCTTGTACATCTATTTCCCCCAATGCAGGATGA > SRR4302543.7244062/1‑94 (MQ=60)
TTGTTTATTTGCAATTATTTTTGTTGGGC‑TTTTGTAGGGTATTTGTACAGCAAAATGGCGCTTGTACATCTATTTCCCCCAATGCAGGATGATA > SRR4302543.4574435/1‑94 (MQ=60)
TGTTTATTTGCAATTATTTTTGTTGGGC‑TTTTGTAGGTTATTTGTACAGCAAAATGGCGCTTGTACATCTATTTCCCCCAATGCAGGATGATAA < SRR4302543.7147790/94‑1 (MQ=60)
TGTTTATTTGCAATTATTTTTGTTGGGC‑TTTTGTAGGTTATTTGTACAGCAAAATGGCGCTTGTACATCTATTTCCCCCAATGCAGGATGATAA < SRR4302543.6918110/94‑1 (MQ=60)
TGTTTACTTGCAATTATTTTTGTTGGGC‑TTTTGTAGGTTATTTGTACAGCAAAATGGCGCTTGTACATCTATTTCCCCCAATGCAGGATGATAA < SRR4302543.1094581/94‑1 (MQ=60)
GTTTATTTGCAATTATTTTTGTTGGGC‑TTTTGTAGGTTATTTGTACAGCAAAATGGCGCTTGTACATCTATTTCCCCCAATGCAGGATGATAAA > SRR4302543.6427183/1‑94 (MQ=60)
GTTTATTTGCAATTATTTTTGTTGGGC‑TTTTGTAGGTTATTTGTACAGCAAAATGGCGCTTGTACATCTATTTCCCCCAATGCAGGATGATAAA > SRR4302543.476254/1‑94 (MQ=60)
TTTATTTGCAATTATTTTTGTTGGGC‑TTTTGTAGGTTATTTGTACAGCAAAATGGCGCTTGTACATCTATTTCCCCCAATGCAGGATGATAAAT < SRR4302543.6733916/94‑1 (MQ=60)
TTTATTTGCAATTATTTTTGTTGGGC‑TTTTGTAGGTTATTTGTACAGCAAAATGGCGCTTGTACATCTATTTCCCCCAATGCAGGATGATAAAT < SRR4302543.646707/94‑1 (MQ=60)
TTTATTTGCAATTATTTTTGTTGGGC‑TTTTGTAGGTTATTTGTACAGCAAAATGGCGCTTGTACATCTATTTCCCCCAATGCAGGATGATAAAT < SRR4302543.206985/94‑1 (MQ=60)
TATTTGCAATTATTTTTGTTGGGC‑TTTTGTAGGTTATTTGTACAGCAAAATGGCGCTTGTACATCTATTTCCCCCAATGCAGGATGATAAATAT < SRR4302543.3429120/94‑1 (MQ=60)
TATTTGCAATTATTTTTGTTGGGC‑TTTTGTAGGTTATTTGTACAGCAAAATGGCGCTTGTACATCTATTTCCCCCAATGCAGGATGATAAATAT > SRR4302543.777212/1‑94 (MQ=60)
TATTTGCAATTATTTTTGTTGGGC‑TTTTGTAGGTTATTTGTACAGCAAAATGGCGCTTGTACATCTATTTCCCCCAATGCAGGATGATAAATAT > SRR4302543.7783840/1‑94 (MQ=60)
ATTTGCAATTATTTTTGTTGGGC‑TTTTGTAGGTTATTTGTACAGCAAAATGGCGCTTGTACATCTATTTCCCCCAATGCAGGATGATAAATATC > SRR4302543.6820992/1‑94 (MQ=60)
ATTTGCAATTATTTTTGTTGGGC‑TTTTGTAGGTTATTTGTACAGCAAAATGGCGCTTGTACATCTATTTCCCCCAATGCAGGATGATAAATATC < SRR4302543.7941632/94‑1 (MQ=60)
ATTTGCAATTATTTTTGTTGGGC‑TTTTGTAGGTTATTTGTACAGCAAAATGGCGCTTGTACATCTATTTCCCCCAATGCAGGATGATAAATATC > SRR4302543.6132265/1‑94 (MQ=60)
TTTGCAATTATTTTTGTTGGGC‑TTTTGTAGGTTATTTGTACAGCAAAATGGCGCTTGTACATCTATTTCCCCCAATGCAGGATGATAAATATCA < SRR4302543.5641709/94‑1 (MQ=60)
TTTGCAATTATTTTTGTTGGGC‑TTTTGTAGGTTATTTGTACAGCAAAATGGCGCTTGTACATCTATTTCCCCCAATGCAGGATGATAAATATCA < SRR4302543.3090848/94‑1 (MQ=60)
TTTGCAATTATTTTTGTTGGGC‑TTTTGTAGGTTATTTGTACAGCAAAATGGCGCTTGTACATCTATTTCCCCCAATGCAGGATGATAAATATCA < SRR4302543.5771118/94‑1 (MQ=60)
TGCAATTATTTTTGTTGGGC‑TTTTGTAGGTTATTTGTACAGCAAAATGGCGCTTGTACATCTATTTCCCCCAATGCAGGATGATAAATATCACG > SRR4302543.2558559/1‑94 (MQ=60)
TGCAATTATTTTTGTTGGGC‑TTTTGTAGGTTATTTGTACAGCAAAATGGCGCTTGTACATCTATTTCCCCCAATGCAGGATGATAAATATCACG < SRR4302543.7390481/94‑1 (MQ=60)
TGCAATTATTTTTGTTGGGC‑TTTTGTAGGTTATTTGTACAGCAAAATGGCGCTTGTACATCTATTTCCCCCAATGCAGGATGATAAATATCACG > SRR4302543.5035683/1‑94 (MQ=60)
TGCAATTATTTTTGTTGGGC‑TTTTGTAGGTTATTTGTACAGCAAAATGGCGCTTGTACATCTATTTCCCCCAATGCAGGATGATAAATATCACG < SRR4302543.509218/94‑1 (MQ=60)
GCAATTATTTTTGTTGGGC‑TTTTGTAGGTTATTTGTACAGCAAAATGGCGCTTGTACATCTATTTCCCCCAATGCAGGATGATAAATATCACGG < SRR4302543.528321/94‑1 (MQ=60)
GCAATTATTTTTGTTGGGC‑TTTTGTAGGTTATTTGTACAGCAAAATGGCGCTTGTACATCTATTTCCCCCAATGCAGGATGATAAATATCACGG < SRR4302543.6431537/94‑1 (MQ=60)
CAATTATTTTTGTTGGGC‑TTTTGTAGGTTATTTGTACAGCAAAATGGCGCTTGTACATCTATTTCCCCCAATGCAGGATGATAAATATCACGGG < SRR4302543.3865133/94‑1 (MQ=60)
CAATTATTTTTGTTGGGC‑TTTTGAAGGTTATTTGTACAGCAAAATGGCGCTTGTACATCTATTTCCCCCAATGCAGGATGATAAATATCACGGG > SRR4302543.6898540/1‑94 (MQ=60)
ATTATTTTTGTTGGGC‑TTTTGTAGGTTATTTGTACAGCAAAATGGCGCTTGTACATCTATTTCCCCCAATGCAGGATGATAAATATCACGGGAG < SRR4302543.4885376/94‑1 (MQ=60)
ATTATTTTTGTTGGGC‑TTTTGTAGGTTATTTGTACAGCAAAATGGCGCTTGTACATCTATTTCCCCCAATGCAGGATGATAAATATCACGGGAG < SRR4302543.3670870/94‑1 (MQ=60)
ATTATTTTTGTTGGGC‑TTTTGTAGGTTATTTGTACAGCAAAATGGCGCTTGTACATCTATTTCCCCCAATGCAGGATGATAAATATCACGGGAG < SRR4302543.2849897/94‑1 (MQ=60)
TTATTTTTGTTGGGC‑TTTTGTAGGTTATTTGTACAGCAAAATGGCGCTTGTACATCTATTTCCCCCAATGCAGGATGATAAATATCACGGGAGA > SRR4302543.203123/1‑94 (MQ=60)
TTATTTTTGTTGGGC‑TTTTGTAGGTTATTTGTACAGCAAAATGGCGCTTGTACATCTATTTCCCCCAATGCAGGATGATAAATATCACGGGAGA > SRR4302543.5480011/1‑94 (MQ=60)
TATTTTTGTTGGGC‑TTTTGTAGGTTATTTGTACAGCAAAATGGCGCTTGTACATCTATTTCCCCCAATGCAGGATGATAAATATCACGGGAGAA > SRR4302543.5837582/1‑94 (MQ=60)
TATTTTTGTTGGGC‑TTTTGTAGGTTATTTGTACAGCAAAATGGCGCTTGTACATCTATTTCCCCCAATGCAGGATGATAAATATCACGGGAGAA < SRR4302543.2270129/94‑1 (MQ=60)
ATTTTTGTTGGGC‑TTTTGTAGGTTATTTGTACAGCAAAATGGCGCTTGTACATCTATTTCCCCCAATGCAGGATGATAAATATCACGGGAGAAT > SRR4302543.263831/1‑94 (MQ=60)
ATTTTTGTTGGGC‑TTTTGTAGGTTATTTGTACAGCAAAATGGCGCTTGTACATCTATTTCCCCCAATGCAGGATGATAAATATCACGGGAGAAT < SRR4302543.3380049/94‑1 (MQ=60)
TTTTTGTTGGGC‑TTTTGTAGGTTATTTGTACAGCAAAATGGCGCTTGTACATCTATTTCCCCCAATGCAGGATGATAAATATCACGGGAGAATA < SRR4302543.7042503/94‑1 (MQ=60)
TTTTTGTTGGGC‑TTTTGTAGGTTATTTGTACAGCAAAATGGCGCTTGTACATCTATTTCCCCCAATGCAGGATGATAAATATCACGGGAGAATA > SRR4302543.4765263/1‑94 (MQ=60)
TTTTGTTGGGC‑TTTTGTAGGTTATTTGTACAGCAAAATGGCGCTTGTACATCTATTTCCCCCAATGCAGGATGATAAATATCACGGGAGAATAG < SRR4302543.3232522/94‑1 (MQ=60)
TTTTGTTGGGC‑TTTTGTAGGTTATTTGTACAGCAAAATGGCGCTTGTACATCTATTTCCCCCAATGCAGGATGATAAATATCACGGGAGAATAG < SRR4302543.6818469/94‑1 (MQ=60)
TTTTGTTGGGC‑TTTTGTAGGTTATTTGTACAGCAAAATGGCGCTTGTACATCTATTTCCCCCAATGCAGGATGATAAATATCACGGGAGAATAG < SRR4302543.6818468/94‑1 (MQ=60)
TTTTGTTGGGC‑TTTTGTAGGTTATTTGTACAGCAAAATGGCGCTTGTACATCTATTTCCCCCAATGCAGGATGATAAATATCACGGGAGAATAG < SRR4302543.3468727/94‑1 (MQ=60)
TTTGTTGGGC‑TTTTGTAGGTTATTTGTACAGCAAAATGGCGCTTGTACATCTATTTCCCCCAATGCAGGATGATAAATATGACGGGAGAATAGA < SRR4302543.4848824/94‑1 (MQ=60)
TTTGTTGGGC‑TTTTGTAGGTTATTTGTACAGCAAAATGGCGCTTGTACATCTATTTCCCCCAATGCAGGATGATAAATATCACGGGAGAATAGA < SRR4302543.1565116/94‑1 (MQ=60)
TTGTTGGGC‑TTTTGTAGGTTATTTGTACAGCAAAATGGCGCTTGTACATCTATTTCCCCCAATGCAGGATGATAAATATCACGGGAGAATAGAG < SRR4302543.4191672/94‑1 (MQ=60)
TGTTGGGC‑TTTTGTAGGTTATTTGTACAGCAAAATGGCGCTTGTACATCTATTTCCCCCAATGCAGGATGATAAATATCACGGGAGAATAGAGA > SRR4302543.6223681/1‑94 (MQ=60)
TGTTGGGC‑TTTTGTAGGTTATTTGTACAGCAAAATGGCGCTTGTACATCTATTTCCCCCAATGCAGGATGATAAATATCACGGGAGAATAGAGA > SRR4302543.6223682/1‑94 (MQ=60)
GTTGGGC‑TTTTGTAGGTTATTTGTACAGCAAAATGGCGCTTGTACATCTATTTCCCCCAATGCAGGATGATAAATATCACGGGAGAATAGAGAA < SRR4302543.3747353/94‑1 (MQ=60)
tttgggcTTTTGTAGGTTATTTGTACAGCAAAATGGCGCTTGTACATCTATTTCCCCCAATGCAGGATGATAAATATCACGGGAGAATAGAGAA < SRR4302543.2268559/87‑1 (MQ=60)
TTGGGC‑TTTTGTAGGTTATTTGTACAGCAAAATGGCGCTTGTACATCTATTTCCCCCAATGCAGGATGATAAATATCACGGGAGAATAGAGAAT < SRR4302543.1858886/94‑1 (MQ=60)
GGGC‑TTTTGTAGGTTATTTGTACAGCAAAATGGCGCTTGTACATCTATTTCCCCCAATGCAGGATGATAAATATCACGGGAGAATAGAGAATCA < SRR4302543.2924292/94‑1 (MQ=60)
tggcTTTTGTAGGTTATTTGTACAGCAAAATGGCGCTTGTACATCTATTTCCCCCAATGCAGGATGATAAATATCACGGGAGAATAGAGAATCA < SRR4302543.2608243/90‑1 (MQ=60)
gcTTTTGTAGGTTATTTGTACAGCAAAATGGCGCTTGTACATCTATTTCCCCCAATGCAGGATGATAAATATCACGGGAGAATAGAGAATCATC > SRR4302543.6851247/3‑94 (MQ=60)
gcTTTTGTAGGTTATTTGTACAGCAAAATGGCGCTTGTACATCTATTTCCCCCAATGCAGGATGATAAATATCACGGGAGAATAGAGAATCATC < SRR4302543.1616435/92‑1 (MQ=60)
gcTTTTGTAGGTTATTTGTACAGCAAAATGGCGCTTGTACATCTATTTCCCCCAATGCAGGATGATAAATATCACGGGAGAATAGAGAATCATC > SRR4302543.6851248/3‑94 (MQ=60)
CTTTTGTAGGTTATTTGTACAGCAAAATGGCGCTTGTACATCTATTTCCCCCAATGCAGGATGATAAATATCACGGGAGAATAGAGAATCATCA > SRR4302543.3752151/1‑94 (MQ=60)
CTTTTGTAGGTTATTTGTACAGCAAAATGGCGCTTGTACATCTATTTCCCCCAATGCAGGATGATAAATATCACGGGAGAATAGAGAATCATCA < SRR4302543.4868255/94‑1 (MQ=60)
TTTTGTAGGTTATTTGTACAGCAAAATGGCGCTTGTACATCTATTTCCCCCAATGCAGGATGATAAATATCACGGGAGAATAGAGAATCATCAA < SRR4302543.802412/94‑1 (MQ=60)
TTTTGTAGGTTATTTGTACAGCAAAATGGCGCTTGTACATCTATTTCCCCCAATGCAGGATGATAAATATCACGGGAGAATAGAGAATCATCAA < SRR4302543.802414/94‑1 (MQ=60)
TTTGTAGGTTATTTGTACAGCAAAATGGCGCTTGTACATATATTTCCCCCAATGCAGGATGATAAATATCACGGGAGAGTAGAGAATCATCAAT > SRR4302543.6046568/1‑94 (MQ=60)
TTGTAGGTTATTTGTACAGCAAAATGGCGCTTGTACATCTATTTCCCCCAATGCAGGATGATAAATATCACGGGAGAATAGAGAATCATCAATC > SRR4302543.4448369/1‑94 (MQ=60)
TGTAGGTTATTTGTACAGCAAAATGGCTCTTGTACATCTATTTCCCCCAATGCAGGATGATAAATATCACGGGAGAATAGAGAATCATCAATCA < SRR4302543.6589961/94‑1 (MQ=60)
|
ACTATAACGCTTGTTAACTATTTCACAAATAATTAACATCCGCATAATTTCCAGCAATCTTTGTTTATTTGCAATTATTTTTGTTGGGCTTTTTGTAGGTTATTTGTACAGCAAAATGGCGCTTGTACATCTATTTCCCCCAATGCAGGATGATAAATATCACGGGAGAATAGAGAATCATCAATCA > NC_000913/2311242‑2311428
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| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
