Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I1 R1
|
1696 |
279.3 |
15874187 |
97.8% |
15524954 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
3,055,697 |
T→C |
D245G (GAT→GGT) |
serA ← |
D‑3‑phosphoglycerate dehydrogenase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,055,697 | 0 | T | C | 99.7%
| 998.6
/ ‑5.1
| 319 | D245G (GAT→GGT) | serA | D‑3‑phosphoglycerate dehydrogenase |
| Reads supporting (aligned to +/- strand): ref base T (1/0); new base C (146/171); total (148/171) |
| Fisher's exact test for biased strand distribution p-value = 4.62e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 2.84e-01 |
Only 100 of 332 total aligned reads displayed.
TCGCTATTGGTCGCCGGTTCCGTCGGGAATACGTCGATTGCCGCCCCCGCCAGATGTTTGCTCGCCAGCGCATCACACAGCGCCGGAATATCCACCACAGTACCGCGCGAAGCATTAATCAGCAGCGAGCCGGGCTTCATTAGTGAAATTTCTTTCGCGCCCATCATATTTTTGGTGGA > NC_000913/3055607‑3055785
|
tCGCTATTGGTCGCCGGTTCCGTCGGGAATACGTCGATTGCCGCCCCCGCCAGATGTTTGCTCGCCAGCGCATCACACAGCGCCGGAATAccc > 2:2542834/1‑93 (MQ=255)
tCGCTATTGGTCGCCGGTTCCGTCGGGAATACGTCGATTGCCGCCCCCGCCAGATGTTTGCTCGCCAGCGCATCACACAGCGCCGGAATAccc > 2:7505301/1‑93 (MQ=255)
cGCTATTGGTCGCCGGTTCCGTCGGGAATACGTCGATTGCCGCCCCCGCCAGATGTTTGCTCGCCAGCGCATCACACAGCGCCGGAATACcca < 1:3266431/93‑1 (MQ=255)
gCTATTGGTCGCCGGTTCCGTCGGGAATACGTCGATTGCCGCCCCCGCCAGATGTTTGCTCGCCAGCGCATCACACAGCGCCGGAATACccac > 2:374792/1‑93 (MQ=255)
aTTGGTCGCCGGTTCCGTCGGGAATACGTCGATTGCCGCCCCCGCCAGATGTTTGCTCGCCAGCGCATCCCACAGCGCCGGAATACCcaccac < 2:5405835/93‑1 (MQ=255)
tgtgTCGCCGGTTCCGTCGGGAATACGTCGATTGCCGCCCCCGCCAGATGTTTGCTCGCCAGCGCATCACACAGCGCCGGAATACCCACcaca < 1:6459373/90‑1 (MQ=255)
gTCGCCGGTTCCGTCGGGAATACGTCGATTGCCGCCCCCGCCAGATGTTTGCTCGCCAGCGCATCACACAGCGCCGGAATACCCACCACAGTa > 1:4205119/1‑93 (MQ=255)
gTCGCCGGTTCCGTCGGGAATACGTCGATTGCCGCCCCCGCCAGATGTTTGCTCGCCAGCGCATCACACAGCGCCGGAATACCCACCACAGTa > 1:953936/1‑93 (MQ=255)
cGCCGGTTCCGTCGGGAATACGTCGATTGCCGCCCCCGCCAGATGTTTGCTCGCCGGCGCATCACTCCGCGCCGGAATACCCCCCACAGttca < 1:7042075/93‑4 (MQ=255)
gCCGGTTCCGTCGGGAATACGTCGATTGCCGCCCCCGCCAGATGTTTGCTCGCCAGCGCATCACACAGCGCCGGAATACCCACCACAGTACcg > 1:696724/1‑93 (MQ=255)
ccGGTTCCGTCGGGAATACGTCGATTGCCGCCCCCGCCAGATGTTTGCTCGCCAGCGCATCACACAGCGCCGGAATACCCACCACAGTACcgc > 2:7829212/1‑93 (MQ=255)
ggTTCCGTCGGGAATACGTCGATTGCCGCCCCCGCCAGATGTTTGCTCGCCAGCGCATCACACAGCGCCGGAATACCCACCACAGTACcgcgc < 1:6634428/93‑1 (MQ=255)
ggTTCCGTCGGGAATACGTCGATTGCCGCCCCCGCCAGATGTTTGCTCGCCAGCGCATCACACAGCGCCGGAATACCCACCACAGTACcgcgc > 2:6141823/1‑93 (MQ=255)
gTTCCGTCGGGAATACGTCGATTGCCGCCCCCGCCAGATGTTTGCTCGCCAGCGCATCACACAGCGCCGGAATACCCACCACAGTACcgcgcg > 2:5119005/1‑93 (MQ=255)
gTTCCGTCGGGAATACGTCGATTGCCGCCCCCGCCAGATGTTTGCTCGCCAGCGCATCACACAGCGCCGGAATACCCACCACAGTACcgcgcg > 1:5185082/1‑93 (MQ=255)
gTTCCGTCGGGAATACGTCGATTGCCGCCCCCGCCAGATGTTTGCTCGCCAGCGCATCACACAGCGCCGGAATACCCACCACAGTACcgcgcg > 2:3311993/1‑93 (MQ=255)
gTTCCGTCGGGAATACGTCGATTGCCGCCCCCGCCAGATGTTTGCTCGCCAGCGCATCACACAGCGCCGGAATACCCACCACAGTACcgcgcg > 1:7884419/1‑93 (MQ=255)
ttCCGTCGGGAATACGTCGATTGCCG‑CCCCGCCAGATGTTTGCTCGCCAGCGCATCACACAGCGCCGGAATACCCACCACAGTACCGCGCGaa > 2:1134328/1‑93 (MQ=255)
tCCGTCGGGAATACGTCGATTGCCGCCCCCGCCAGATGTTTGCTCGCCAGCGCATCACACAGCGCCGGAATACCCACCACAGTACCGCGCGaa > 1:7399050/1‑93 (MQ=255)
tCCGTCGGGAATACGTCGATTGCCGCCCCCGCCAGATGTTTGCTCGCCAGCGCATCACACAGCGCCGGAATACCCACCACAGTACCGCGCGaa < 2:3267591/93‑1 (MQ=255)
tCCGTCGGGAATACGTCGATTGCCGCCCCCGCCAGATGTTTGCTCGCCAGCGCATCACACAGCGCCGGAATACCCACCACAGTACCGCGCGaa < 2:4720318/93‑1 (MQ=255)
ccGTCGGGAATACGTCGATTGCCGCCCCCGCCAGATGTTTGCTCGCCAGCGCATCACACAGCGCCGGAATACCCACCACAGTACCGCGCGAAg > 1:1661562/1‑93 (MQ=255)
tCGGGAATACGTCGATTGCCGCCCCCGCCAGATGTTTGCTCGCCAGCGCATCACACAGCGCCGGAATACCCACCACAGTACCGCGCGAAGCAt < 1:264076/93‑1 (MQ=255)
tCGGGAATACGTCGATTGCCGCCCCCGCCAGATGTTTGCTCGCCAGCGCATCACACAGCGCCGGAATACCCACCACAGTACCGCGCGAAGCAt > 1:1327462/1‑93 (MQ=255)
cGGGAATACGTCGATTGCCGCCCCCGCCAGATGTTTGCTCGCCAGCGCATCACACAGCGCCGGAATACCCACCACAGTACCGCGCGAAGCAtt < 2:2179484/93‑1 (MQ=255)
gggAATACGTCGATTGCCGCCCCCGCCAGATGTTTGCTCGCCAGCGCATCACACAGCGCCGGAATACCCACCACAGTACCGCGCGAAGCATTa > 2:5574026/1‑93 (MQ=255)
ggAATACGTCGATTGCCGCCCCCGCCAGATGTTTGCTCGCCAGCGCATCACACAGCGCCGGAATACCCACCACAGTACCGCGCGAAGCATTaa > 2:1903975/1‑93 (MQ=255)
ggAATACGTCGATTGCCGCCCCCGCCAGATGTTTGCTCGCCAGCGCATCACACAGCGCCGGAATACCCACCACAGTACCGCGCGAAGCATTaa > 1:226005/1‑93 (MQ=255)
gagaTACGTCGATTGCCGCCCCCGCCAGATGTTTGCTCGCCAGCGCATCACACAGCGCCGGAATACCCACCACAGTACCGCGCGAAGCATTaa < 1:2365467/90‑1 (MQ=255)
gAATACGTCGATTGCCGCCCCCGCCAGATGTTTGCTCGCCAGCGCATCACACAGCGCCGGAATACCCACCACAGTACCGCGCGAAGCATTAAt < 1:2123893/93‑1 (MQ=255)
atgcGTCGATTGCCGCCGCCGCCAGATGTTTGCTCGCCAGCGCATCACACAGCGCCGGAATACCCACCACAGTACCGCGCGAAGCATTAATca < 1:7314940/90‑1 (MQ=255)
aTACGTCGATTGCCGCCCCCGCCAGATGTTTGCTCGCCAGCGCATCACACAGCGCCGGAATACCCACCACAGTACCGCGCGAAGCATTAATca < 2:246956/93‑1 (MQ=255)
aTACGTCGATTGCCGCCCCCGCCAGATGTTTGCTCGCCAGCGCATCACACAGCGCCGGAATACCCACCACAGTACCGCGCGAAGCATTAATca < 2:3445488/93‑1 (MQ=255)
tACGTCGATTGCCGCCCCCGCCAGATGTTTGCTCGCCAGCGCATCACACAGCGCCGGAATACCCACCACAGTACCGCGCGAAGCATTAATcag > 1:3730002/1‑93 (MQ=255)
tACGTCGATTGCCGCCCCCGCCAGATGTTTGCTCGCCAGCGCATCACACAGCGCCGGAATACCCACCACAGTACCGCGCGAAGCATTAATcag < 1:7253874/93‑1 (MQ=255)
tACGTCGATTGCCGCCCCCGCCAGATGTTTGCTCGCCAGCGCATCACACAGCGCCGGAATACCCACCACAGTACCGCGCGAAGCATTAATcag > 1:1558185/1‑93 (MQ=255)
cGTCGATTGCCGCCCCCGCCAGATGTTTGCTCGCCAGCGCATCACACAGCGCCGGAATACCCCCCACAGTACCGCGCGAAGCATTAATcagca < 2:659155/93‑1 (MQ=255)
cGTCGATTGCCGCCCCCGCCAGATGTTTGCTCGCCAGCGCATCACACAGCGCCGGAATACCCACCACAGTACCGCGCGAAGCATTAATcagca < 2:1711309/93‑1 (MQ=255)
cGTCGATTGCCGCCCCCGCCAGATGTTTGCTCGCCAGCGCATCACACAGCGCCGGAATACCCACCACAGTACCGCGCGAAGCATTAATcagca < 1:5494907/93‑1 (MQ=255)
gATTGCCGCCCCCGCCAGATGTTTGCTCGCCAGCGCATCACACAGCGCCGGAATACCCACCACAGTACCGCGCGAAGCATTAATCAGCAGCGa > 2:855499/1‑93 (MQ=255)
gATTGCCGCCCCCGCCAGATGTTTGCTCGCCAGCGCATCACACAGCGCCGGAATACCCACCACAGTACCGCGCGAAGCATTAATCAGCAGCGa < 1:1925583/93‑1 (MQ=255)
ttGCCGCCCCCGCCAGATGTTTGCTCGCCAGCGCATCACACAGCGCCGGAATACCCACCACAGTACCGCGCGAAGCATTAATCAGCAGCGAGc < 2:1946711/93‑1 (MQ=255)
ttGCCGCCCCCGCCAGATGTTTGCTCGCCAGCGCATCACACAGCGCCGGAATACCCACCACAGTACCGCGCGAAGCATTAATCAGCAGCGAGc > 1:832423/1‑93 (MQ=255)
ccgccCCCGCCAGATGTTTGCTCGCCAGCGCATCACACAGCGCCGGAATACCCACCACAGTACCGCGCGAAGCATTAATCAGCAGCGAGCCgg < 2:3361917/93‑1 (MQ=255)
ccgccCCCGCCAGATGTTTGCTCGCCAGCGCATCACACAGCGCCGGAATACCCACCACAGTACCGCGCGAAGCATTAATCAGCAGCGAGCCgg < 1:1133537/93‑1 (MQ=255)
ccgccCCCGCCAGATGTTTGCTCGCCAGCGCATCACACAGCGCCGGAATACCCACCACAGTACCGCGCGAAGCATTAATCAGCAGCGAGCCgg < 1:1249279/93‑1 (MQ=255)
ccgccCCCGCCAGATGTTTGCTCGCCAGCGCATCACACAGCGCCGGAATACCCACCACAGTACCGCGCGAAGCATTAATCAGCAGCGAGCCgg < 2:2013345/93‑1 (MQ=255)
gccCCCGCCAGATGTTTGCTCGCCAGCGCATCACACAGCGCCGGAATACCCACCACAGTACCGCGCGAAGCATTAATCAGCAGCGATCCGGGc < 1:1824267/93‑1 (MQ=255)
gccCCCGCCAGATGTTTGCTCGCCAGCGCATCACACAGCGCCGGAATACCCACCACAGTACCGCGCGAAGCATTAATCAGCAGCGAGCCGGGc < 1:1423683/93‑1 (MQ=255)
ccccccGCCAGATGTTTGCTCGCCAGCGCATCACACAGCGCCGGAATACCCACCACAGTACCGCGCGAAGCATTAATCAGCAGCGAGCCGGGc < 1:7433699/92‑1 (MQ=255)
ccccGCCAGATGTTTGCTCGCCAGCGCATCACACAGCGCCGGAATACCCACCACAGTACCGCGCGAAGCATTAATCAGCAGCGAGCCGGGCtt < 2:1312973/93‑1 (MQ=255)
cccGCCAGATGTTTGCTCGCCAGCGCATCACACAGCGCCGGAATACCCACCACAGTACCGCGCGAAGCATTAATCAGCAGCGAGCCGGGCtgc > 1:4951042/1‑91 (MQ=255)
cccGCCAGATGTTTGCTCGCCAGCGCATCACACAGCGCCGGAATACCCACCACAGTACCGCGCGAAGCATTAATCAGCAGCGAGCCGGGCTTc > 2:574030/1‑93 (MQ=255)
ccGCCAGATGTTTGCTCGCCAGCGCATCACACAGCGCCGGAATACCCACCACAGTACCGCGCGAAGCATTAATCAGCAGCGAGCCGGGCTTCa < 2:5277757/93‑1 (MQ=255)
cGCCAGATGTTTGCTCGCCAGCGCATCACACAGCGCCGGAATGCCCACCACAGTACCGCGCGAAGCATTAATCAGCAGCGAGCCGGGCTTCAt < 2:922438/93‑1 (MQ=255)
cGCCAGATGTTTGCTCGCCAGCGCATCACACAGCGCCGGAATACCCACCACAGTACCGCGCGAAGCATTAATCAGCAGCGAGCCGGGCTTCAt > 1:4120494/1‑93 (MQ=255)
ccAGATGTTTGCTCGCCAGCGCATCACACAGCGCCGGAATACCCACCACAGTACCGCGCGAAGCATTAATCAGCAGCGAGCCGGGCTTCATTa < 1:4270713/93‑1 (MQ=255)
ccAGATGTTTGCTCGCCAGCGCATCACACAGCGCCGGAATACCCACCACAGTACCGCGCGAAGCATTAATCAGCAGCGAGCCGGGCTTCATTa < 1:4362382/93‑1 (MQ=255)
cAGATGTTTGCTCGCCAGCGCATCACACAGCGCCGGAATACCCACCACAGTACCGCGCGAAGCATTAATCAGCAGCGAGCCGGGCTTCATTAg < 2:4435179/93‑1 (MQ=255)
aGATGTTTGCTCGCCAGCGCATCACACAGCGCCGGAATACCCACCACAGTACCGCGCGAAGCATTAATCAGCAGCGAGCCGGGCTTCATTAGt < 2:1415019/93‑1 (MQ=255)
aGATGTTTGCTCGCCAGCGCATCACACAGCGCCGGAATACCCACCACAGTACCGCGCGAAGCATTAATCAGCAGCGAGCCGGGCTTCATTAGt > 1:2891245/1‑93 (MQ=255)
aGATGTTTGCTCGCCAGCGCATCACACAGCGCCGGAATACCCACCACAGTACCGCGCGAAGCATTAATCAGCAGCGAGCCGGGCTTCATTAGt < 1:5229158/93‑1 (MQ=255)
aGATGTTTGCTCGCCAGCGCATCACACAGCGCCGGAATACCCACCACAGTACCGCGCGAAGCATTAATCAGCAGCGAGCCGGGCTTCATTAGt < 2:2877795/93‑1 (MQ=255)
aTGTTTGCTCGCCAGCGCATCACACAGCGCCGGAATACCCACCACAGTACCGCGCGAAGCATTAATCAGCAGCGAGCCGGGCTTCATTAGTGa > 2:3646751/1‑93 (MQ=255)
aTGTTTGCTCGCCAGCGCATCACACAGCGCCGGAATACCCACCACAGTACCGCGCGAAGCATTAATCAGCAGCGAGCCGGGCTTCATTAGTGa < 1:5456161/93‑1 (MQ=255)
tGTTTGCTCGCCAGCGCATCACACAGCGCCGGAATACCCACCACAGTACCGCGCGAAGCATTAATCAGCAGCGAGCCGGGCTTCATTAGTGaa > 2:3110193/1‑93 (MQ=255)
gTTTGCTCGCCAGCGCATCACACAGCGCCGGAATACCCACCACAGTACCGCGCGAAGCATTAATCAGCAGCGAGCCGGGCTTCATTAGTGaaa < 2:7484414/93‑1 (MQ=255)
tttGCTCGCCAGCGCATCACACAGCGCCGGAATACCCACCACAGTACCGCGCGAAGCATTAATCAGCAGCGAGCCGGGCTTCATTAGTGAAAt > 1:5101890/1‑93 (MQ=255)
gtggCCAGCGCATAACACAGCGCAGGAATACCCACCGCAGTACCGCGCGAAGCATTAATCAGCAGCGAGCCGGGCTTCATTAGTGAAAtttct < 2:4212781/90‑1 (MQ=255)
cTCGCCAGCGCATCACACAGCGCCGGAATACCCACCACAGTACCGCGCGAAGCATTAATCAGCAGCGAGCCGGGCTTCATTAGTGAAAtttct < 2:5350021/93‑1 (MQ=255)
tCGCCAGCGCATCACACAGCGCCGGAATACCCACCACAGTACCGCGCGAAGCATTAATCAGCAGCGAGCCGGGCTTCATTAGTGAAAtttctt < 2:58053/93‑1 (MQ=255)
tCGCCAGCGCATCACACAGCGCCGGAATACCCACCACAGTACCGCGCGAAGCATTAATCAGCAGCGAGCCGGGCTTCATTAGTGAAAtttctt < 1:5810373/93‑1 (MQ=255)
tCGCCAGCGCATCACACAGCGCCGGAATACCCACCACAGTACCGCGCGAAGCATTAATCAGCAGCGAGCCGGGCTTCATTAGTGAAAtttctt > 1:6247012/1‑93 (MQ=255)
cgacAGCGCATCACACAGCCCCGGAATCCCCACCACAGTACCGCGCGAAGCATTAATCAGCAGCGAGCCGGTCTTCATTAGTGAAAtttcttt < 1:3075791/90‑1 (MQ=255)
cGCCAGCGCATCACACAGCGCCGGAATACCCACCACAGTACCGCGCGAAGCATTAATCAGCAGCGAGCCGGGCTTCATTAGTGAAAtttcttt < 2:2122169/93‑1 (MQ=255)
cGCCAGCGCATCACACAGCGCCGGAATACCCACCACAGTACCGCGCGAAGCATTAATCAGCAGCGAGCCGGGCTTCATTAGTGAAAtttcttt < 1:1030583/93‑1 (MQ=255)
ccAGCGCATCACACAGCGCCGGAATACCCACCACAGTACCGCGCAAAGCATTAATCAGCAGCGAGCCGGGCTTCATTAGTGAAATTTCTTTcg < 2:775815/93‑1 (MQ=255)
aGCGCATCACACAGCGCCGGAATACCCACCACAGTACCGCGCGAAGCATTAATCAGCAGCGAGCCGGGCTTCATTAGTGAAATTTCTTTcgcg > 1:4072411/1‑93 (MQ=255)
aGCGCATCACACAGCGCCGGAATACCCACCACAGTACCGCGCGAAGCATTAATCAGCAGCGAGCCGGGCTTCATTAGTGAAATTTCTTTcgcg > 2:3535045/1‑93 (MQ=255)
gcATCACACAGCGCCGGAATACCCACCACAGTACCGCGCGAAGCATTAATCAGCAGCGAGCCGGGCTTCATTAGTGAAATTTCTTTCGCGccc < 1:7495548/93‑1 (MQ=255)
gcATCACACAGCGCCGGAATACCCACCACAGTACCGCGCGAAGCATTAATCAGCAGCGAGCCGGGCTTCATTAGTGAAATTTCTTTCGCGccc > 1:3591581/1‑93 (MQ=255)
cATCACACAGCGCCGGAATACCCACCACAGTACCGCGCGAAGCATTAATCAGCAGCGAGCCGGGCTTCATTAGTGAAATTTCTTTCGCGCCca < 2:4931922/93‑1 (MQ=255)
tCACACAGCGCCGGAATACCCACCACAGTACCGCGCGAAGCATTAATCAGCAGCGAGCCGGGCTTCATTAGTGAAATTTCTTTCGCGCCcatc < 1:3040839/93‑1 (MQ=255)
tCACACAGCGCCGGAATACCCACCACAGTACCGCGCGAAGCATTAATCAGCAGCGAGCCGGGCTTCATTAGTGAAATTTCTTTCGCGCCcatc > 1:2836960/1‑93 (MQ=255)
cacacaGCGCCGGAATACCCACCACAGTACCGCGCGAAGCATTAATCAGCAGCGAGCCGGGCTTCATTAGTGAAATTTCTTTCGCGCCcatca < 1:4604065/93‑1 (MQ=255)
cacaGCGCCGGAATACCCACCACAGTACCGCGCGAAGCATTAATCAGCAGCGAGCCGGGCTTCATTAGTGAAATTTCTTTCGCGCCCATCata > 2:6974114/1‑93 (MQ=255)
cacaGCGCCGGAATACCCACCACAGTACCGCGCGAAGCATTAATCAGCAGCGAGCCGGGCTTCATTAGTGAAATTTCTTTCGCGCCCATCata < 1:7199810/93‑1 (MQ=255)
cacaGCGCCGGAATACCCACCACAGTACCGCGCGAAGCATTAATCAGCAGCGAGCCGGGCTTCATTAGTGAAATTTCTTTCGCGCCCATCata < 2:1059142/93‑1 (MQ=255)
caGCGCCGGAATACCCACCACAGTACCGCGCGAAGCATTAATCAGCAGCGAGCCGGGCTTCATTAGTGAAATTTCTTTCGCGCCCATCATAtt < 1:4816098/93‑1 (MQ=255)
caGCGCCGGAATACCCACCACAGTACCGCGCGAAGCATTAATCAGCAGCGAGCCGGGCTTCATTAGTGAAATTTCTTTCGCGCCCATCATAtt < 1:2961715/93‑1 (MQ=255)
atctccGGAATACCCACCACAGTACCGCGCGAAGCATTAATCAGCAGCGAGCCGGGCTTCATTAGTGAAATTTCTTTCGCGCCCATCATAttt < 2:5446593/89‑1 (MQ=255)
cgcCGGAATACCCACCACAGTACCGCGCGAAGCATTAATCAGCAGCGAGCCGGGCTTCATTAGTGAAATTTCTTTCGCGCCCATCATAttttt < 2:2367454/93‑1 (MQ=255)
ccGGAATACCCACCACAGTACCGCGCGAAGCATTAATCAGCAGCGAGCCGGGCTTCATTAGTGAAATTTCTTTCGCGCCCATCATATTTTtgg > 2:7090449/1‑93 (MQ=255)
ccGGAATACCCACCACAGTACCGCGCGAAGCATTAATCAGCAGCGAGCCGGGCTTCATTAGTGAAATTTCTTTCGCGCCCATCATATTTTtgg < 1:6538297/93‑1 (MQ=255)
cGGAATATCCACCACAGTACCGCGCGAAGCATTAATCAGCAGCGAGCCGGGCTTCATTAGTGAAATTTCTTTCGCGCCCATCATATTTTtggt > 2:668667/1‑93 (MQ=255)
gAATACCCACCACAGTACCGCGCGAAGCATTAATCAGCAGCGAGCCGGGCTTCATTAGTGAAATTTCTTTCGCGCCCATCATATTTTtggtgg > 2:7059088/1‑93 (MQ=255)
aaTACCCACCACAGTACCGCGCGAAGCATTAATCAGCAGCGAGCCGGGCTTCATTAGTGAAATTTCTTTCGCGCCCATCATATTTTTGGTGGa > 2:4137039/1‑93 (MQ=255)
aaTACCCACCACAGTACCGCGCGAAGCATTAATCAGCAGCGAGCCGGGCTTCATTAGTGAAATTTCTTTCGCGCCCATCATATTTTTGGTGGa > 2:3959265/1‑93 (MQ=255)
aaTACCCACCACAGTACCGCGCGAAGCATTAATCAGCAGCGAGCCGGGCTTCATTAGTGAAATTTCTTTCGCGCCCATCATATTTTTGGTGGa < 2:6468803/93‑1 (MQ=255)
aaTACCCACCACAGTACCGCGCGAAGCATTAATCAGCAGCGAGCCGGGCTTCATTAGTGAAATTTCTTTCGCGCCCATCATATTTTTGGTGGa < 2:2777421/93‑1 (MQ=255)
|
TCGCTATTGGTCGCCGGTTCCGTCGGGAATACGTCGATTGCCGCCCCCGCCAGATGTTTGCTCGCCAGCGCATCACACAGCGCCGGAATATCCACCACAGTACCGCGCGAAGCATTAATCAGCAGCGAGCCGGGCTTCATTAGTGAAATTTCTTTCGCGCCCATCATATTTTTGGTGGA > NC_000913/3055607‑3055785
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
GGATCGCTATTGGTCGCCGGTTCCGTCGGGAATACGTCGATTGCCGCCCCCGCCAGATGTTTGCTCGCCAGCGCATCACACAGCGCCGGAATATCCACCACAGTACCGCGCGAAGCATTAATCAGCAGCGAGCCGGGCTTCATTAGTGAAATTTCTTTCGCGCCCATCATATTTTTGGTGGACGGAT > NC_000913/3055604‑3055790
|
GGATCGCTATTGGTCGCCGGTTCCGTCGGGAATACGTCGATTGCCGCCCCCGCCAGATGTTTGCTCGCCAGCGCATCACACAGCGCCGGAATAC > SRR4302543.184395/1‑94 (MQ=60)
GGATCGCTATTGGTCGCCGGTTCCGTCGGGAATACGTCGATTGCCGCCCCCGCCAGATGTTTGCTCGCCAGCGCATCACACAGCGCCGGAATAC > SRR4302543.228810/1‑94 (MQ=60)
GATCGCTATTGGTCGCCGGTTCCGTCGGGAATACGTCGATTGCCGCCCCCGCCAGATGTTTGCTCGCCAGCGCATCACACAGCGCCGGAATACC > SRR4302543.1519841/1‑94 (MQ=60)
GATCGCTATTGGTCGCCGGTTCCGTCGGGAATACGTCGATTGCCGCCCCCGCCAGATGTTTGCTCGCCAGCGCATCACACAGCGCCGGAATACC > SRR4302543.2906465/1‑94 (MQ=60)
ATCGCTATTGGTCGCCGGTTCCGTCGGGAATACGTCGATTGCCGCCCCCGCCAGATGTTTGCTCGCCAGCGCATCACACAGCGCCGGAATACCC > SRR4302543.7481769/1‑94 (MQ=60)
ATCGCTATTGGTCGCCGGTTCCGTCGGGAATACGTCGATTGCCGCCCCCGCCAGATGTTTGCTCGCCAGCGCATCACACAGCGCCGGAATACCC < SRR4302543.2203883/94‑1 (MQ=60)
TCGCTATTGGTCGCCGGTTCCGTCGGGAATACGTCGATTGCCGCCCCCGCCAGATGTTTGCTCGCCAGCGCATCACACAGCGCCGGAATACCCA < SRR4302543.4374976/94‑1 (MQ=60)
CGCTATTGGTCGCCGGTTCCGTCGGGAATACGTCGATTGCCGCCCCCGCCAGATGTTTGCTCGCCAGCGCATCACACAGCGCCGGAATACCCAC < SRR4302543.3295949/94‑1 (MQ=60)
CGCTATTGGTCGCCGGTTCCGTCGGGAATACGTCGATTGCCGCCCCCGCCAGATGTTTGCTCGCCAGCGCATCACACAGCGCCGGAATACCCAC > SRR4302543.4920258/1‑94 (MQ=60)
CGCTATTGGTCGCCGGTTCCGTCGGGAATACGTCGATTGCCGCCCCCGCCAGATGTTTGCTCGCCAGCGCATCACACAGCGCCGGAATACCCAC > SRR4302543.5136351/1‑94 (MQ=60)
CGCTATTGGTCGCCGGTTCCGTCGGGAATACGTCGATTGCCGCCCCCGCCAGATGTTTGCTCGCCAGCGCATCACACAGCGCCGGAATACCCAC > SRR4302543.5292751/1‑94 (MQ=60)
CTATTGGTCGCCGGTTCCGTCGGGAATACGTCGATTGCCGCCCCCGCCAGATGTTTGCTCGCCAGCGCATCACACAGCGCCGGAATACCCACCC > SRR4302543.1449427/1‑94 (MQ=60)
CTATTGGTCGCCGGTTCCGTCGGGAATACGTCGATTGCCGCCCCCGCCAGATGTTTGCTCGCCAGCGCATCACACAGCGCCGGAATACCCACCA > SRR4302543.5079771/1‑94 (MQ=60)
ATTGGTCGCCGGTTCCGTCGGGAATACGTCGATTGCCGCCCCCGCCAGATGTTTGCTCGCCAGCGCATCACACAGCGCCGGAATACCCACCACA < SRR4302543.3100391/94‑1 (MQ=60)
tgtGTCGCCGGTTCCGTCGGGAATACGTCGATTGCCGCCCCCGCCAGATGTTTGCTCGCCAGCGCATCACACAGCGCCGGAATACCCACCACAG < SRR4302543.6520236/91‑1 (MQ=60)
TTGGTCGCCGGTTCCGTCGGGAATACGTCGATTGCCGCCCCCGCCAGATGTTTGCTCGCCAGCGCATCACACAGCGCCGGAATACCCACCACAG < SRR4302543.4438967/94‑1 (MQ=60)
TGGTCGCCGGTTCCGTCGGGAATACGTCGATTGCCGCCCCCGCCAGATGTTTGCTCGCCAGCGCATCACACAGCGCCGGAATACCCACCACAGT < SRR4302543.3866163/94‑1 (MQ=60)
GGTCGCCGGTTCCGTCGGGAATACGTCGATTGCCGCCCCCGCCAGATGTTTGCTCGCCAGCGCATCACACAGCGCCGGAATACCCACCACAGTA < SRR4302543.2621810/94‑1 (MQ=60)
GGTCGCCGGTTCCGTCGGGAATACGTCGATTGCCGCCCCCGCCAGATGTTTGCTCGCCAGCGCATCACACAGCGCCGGAATACCCACCACAGTA > SRR4302543.962297/1‑94 (MQ=60)
GGTCGCCGGTTCCGTCGGGAATACGTCGATTGCCGCCCCCGCCAGATGTTTGCTCGCCAGCGCATCACACAGCGCCGGAATACCCACCACAGTA > SRR4302543.4243249/1‑94 (MQ=60)
GGTCGCCGGTTCCGTCGGGAATACGTCGATTGCCGCCCCCGCCAGATGTTTGCTCGCCAGCGCATCACACAGCGCCGGAATACCCACCACAGTA > SRR4302543.962295/1‑94 (MQ=60)
GGTCGCCGGTTCCGTCGGGAATACGTCGATTGCCGCCCCCGCCAGATGTTTGCTCGCCAGCGCATCACACAGCGCCGGAATACCCACCACAGTA > SRR4302543.1112387/1‑94 (MQ=60)
GTCGCCGGTTCCGTCGGGAATACGTCGATTGCCGCCCCCGCCAGATGTTTGCTCGCCAGCGCATCACACAGCGCCGGAATACCCACCACAGTAC < SRR4302543.7387135/94‑1 (MQ=60)
CGCCGGTTCCGTCGGGAATACGTCGATTGCCGCCCCCGCCAGATGTTTGCTCGCCGGCGCATCACTCCGCGCCGGAATACCCCCCACAGTtcag < SRR4302543.7110118/94‑5 (MQ=60)
CGCCGGTTCCGTCGGGAATACGTCGATTGCCGCCCCCGCCAGATGTTTGCTCGCCAGCGCATCACACAGCGCCGGAATACCCACCACAGTACCG > SRR4302543.703103/1‑94 (MQ=60)
CGCCGGTTCCGTCGGGAATACGTCGATTGCCGCCCCCGCCAGATGTTTGCTCGCCAGCGCATCACACAGCGCCGGAATACCCACCACAGTACCG < SRR4302543.5539671/94‑1 (MQ=60)
GCCGGTTCCGTCGGGAATACGTCGATTGCCGCCCCCGCCAGATGTTTGCTCGCCAGCGCATCACACAGCGCCGGAATACCCACCACAGTACCGC > SRR4302543.4129430/1‑94 (MQ=60)
CCGGTTCCGTCGGGAATACGTCGATTGCCGCCCCCGCCAGATGTTTGCTCGCCAGCGCATCACACAGCGCCGGAATACCCACCACAGTACCGCG > SRR4302543.7312535/1‑94 (MQ=60)
GGTTCCGTCGGGAGTACGTCGATTGCCGCCCCCGCCAGATGTTTGCTCGCCAGCGCATCACACAGCGCCGGAATACCCACCACAGTACCGCGCG > SRR4302543.3002552/1‑94 (MQ=60)
GGTTCCGTCGGGAATACGTCGATTGCCGCCCCCGCCAGATGTTTGCTCGCCAGCGCATCACACAGCGCCGGAATACCCACCACAGTACCGCGCG > SRR4302543.5231865/1‑94 (MQ=60)
GGTTCCGTCGGGAATACGTCGATTGCCGCCCCCGCCAGATGTTTGCTCGCCAGCGCATCACACAGCGCCGGAATACCCACCACAGTACCGCGCG < SRR4302543.1426801/94‑1 (MQ=60)
GGTTCCGTCGGGAATACGTCGATTGCCGCCCCCGCCAGATGTTTGCTCGCCAGCGCATCACACAGCGCCGGAATACCCACCACAGTACCGCGCG < SRR4302543.6697030/94‑1 (MQ=60)
GGTTCCGTCGGGAATACGTCGATTGCCGCCCCCGCCAGATGTTTGCTCGCCAGCGCATCACACAGCGCCGGAATACCCACCACAGTACCGCGCG > SRR4302543.4150552/1‑94 (MQ=60)
GGTTCCGTCGGGAATACGTCGATTGCCGCCCCCGCCAGATGTTTGCTCGCCAGCGCATCACACAGCGCCGGAATACCCACCACAGTACCGCGCG > SRR4302543.814076/1‑94 (MQ=60)
GGTTCCGTCGGGAATACGTCGATTGCCGCCCCCGCCAGATGTTTGCTCGCCAGCGCATCACACAGCGCCGGAATACCCACCACAGTACCGCGCG > SRR4302543.7958596/1‑94 (MQ=60)
GGTTCCGTCGGGAATACGTCGATTGCCGCCCCCGCCAGATGTTTGCTCGCCAGCGCATCACACAGCGCCGGAATACCCACCACAGTACCGCGCG > SRR4302543.2343021/1‑94 (MQ=60)
GGTTCCGTCGGGAATACGTCGATTGCCGCCCCCGCCAGATGTTTGCTCGCCAGCGCATCACACAGCGCCGGAATACCCACCACAGTACCGCGCG > SRR4302543.5231863/1‑94 (MQ=60)
GGTTCCGTCGGGAATACGTCGATTGCCGCCCCCGCCAGATGTTTGCTCGCCAGCGCATCACACAGCGCCGGAATACCCACCACAGCACCGCGCG > SRR4302543.5231864/1‑94 (MQ=60)
GTTCCGTCGGGAATACGTCGATTGCCGCCCCCGCCAGATGTTTGCTCGCCAGCGCATCACACAGCGCCGGAATACCCACCACAGTACCGCGCGA > SRR4302543.6637522/1‑94 (MQ=60)
GTTCCGTCGGGAATACATCGATTGCCGCCCCCGCCAGATGTTTGCTCGCCAGCGCATCACACAGCGCCGGAATACCCACCACAGTACCGCGCGA > SRR4302543.894720/1‑94 (MQ=60)
TTCCGTCGGGAATACGTCGATTGCCGCCCCCGCCAGATGTTTGCTCGCCAGCGCATCACACAGCGCCGGAATACCCACCACAGTACCGCGCGAA > SRR4302543.7470092/1‑94 (MQ=60)
TCCGTCGGGAATACGTCGATTGCCGCCCCCGCCAGATGTTTGCTCGCCAGCGCATCACACAGCGCCGGAATACCCACCACAGTACCGCGCGAAG > SRR4302543.1676447/1‑94 (MQ=60)
TCCGTCGGGAATACGTCGATTGCCGCCCCCGCCAGATGTTTGCTCGCCAGCGCATCACACAGCGCCGGAATACCCACCACAGTACCGCGCGAAG > SRR4302543.648799/1‑94 (MQ=60)
TCCGTCGGGAATACGTCGATTGCCGCCCCCGCCAGATGTTTGCTCGCCAGCGCATCACACAGCGCCGGAATACCCACCACAGTACCGCGCGAAG < SRR4302543.2667922/94‑1 (MQ=60)
CGTCGGGAATACGTCGATTGCCGCCCCCGCCAGATGTTTGCTCGCCAGCGCATCACACAGCGCCGGAATACCCACCACAGTACCGCGCGAAGCA < SRR4302543.2337953/94‑1 (MQ=60)
CGTCGGGAATACGTCGATTGCCGCCCCCGCCAGATGTTTGCTCGCCAGCGCATCACACAGCGCCGGAATACCCACCACAGTACCGCGCGAAGCA > SRR4302543.7556040/1‑94 (MQ=60)
GTCGGGAATACGTCGATTGCCGCCCCCGCCAGATGTTTGCTCGCCAGCGCATCACACAGCGCCGGAATACCCACCACAGTACCGCGCGAAGCAT > SRR4302543.1971108/1‑94 (MQ=60)
GTCGGGAATACGTCGATTGCCGCCCCCGCCAGATGTTTGCTCGCCAGCGCATCACACAGCGCCGGAATACCCACCACAGTACCGCGCGAAGCAT > SRR4302543.1339288/1‑94 (MQ=60)
TCGGGAATACGTCGATTGCCGCCCCCGCCAGATGTTTGCTCGCCAGCGCATCACACAGCGCCGGAATACCCACCACAGTACCGCGCGAAGCATT < SRR4302543.266391/94‑1 (MQ=60)
GGGAATACGTCGATTGCCGCCCCCGCCAGATGTTTGCTCGCCAGCGCATCACACAGCGCCGGAATACCCACCACAGTACCGCGCGAAGCATTAA > SRR4302543.227958/1‑94 (MQ=60)
gagATACGTCGATTGCCGCCCCCGCCAGATGTTTGCTCGCCAGCGCATCACACAGCGCCGGAATACCCACCACAGTACCGCGCGAAGCATTAAT < SRR4302543.2386919/91‑1 (MQ=60)
GGAATACGTCGATTGCCGCCCCCGCCAGATGTTTGCTCGCCAGCGCATCACACAGCGCCGGAATACCCACCACAGTGCCGCGCGAAGCATTAAT < SRR4302543.1388555/94‑1 (MQ=60)
GGAATACGTCGATTGCCGCCCCCGCCAGATGTTTGCTCGCCAGCGCATCACACAGCGCCGGAATACCCACCACAGTACCGCGCGAAGCATTAAT > SRR4302543.3048879/1‑94 (MQ=60)
GAATACGTCGATTGCCGCCCCCGCCAGATGTTTGCTCGCCAGCGCATCACACAGCGCCGGAATACCCACCACAGTACCGCGCGAAGCATTAATC > SRR4302543.7487921/1‑94 (MQ=60)
GAATACGTCGATTGCCGCCCCCGCCAGATGTTTGCTCGCCAGCGCATCACACAGCGCCGGAATACCCACCACAGTACCGCGCGAAGCATTAATC < SRR4302543.2142908/94‑1 (MQ=60)
AATACGTCGATTGCCGCCCCCGCCAGATGTTTGCTCGCCAGCGCATCACACAGCGCCGGAATACCCACCACAGTACCGCGCGAAGCATTAATCA < SRR4302543.7897863/94‑1 (MQ=60)
AATACGTCGATTGCCGCCCCCGCCAGATGTTTGCTCGCCAGCGCATCACACAGCGCCGGAATACCCACCACAGTACCGCGCGAAGCATTAATCA < SRR4302543.7669982/94‑1 (MQ=60)
AATACGTCGATTGCCGCCCCCGCCAGATGTTTGCTCGCCAGCGCATCACACAGCGCCGGAATACCCACCACAGTACCGCGCGAAGCATTAATCA < SRR4302543.2539286/94‑1 (MQ=60)
ATGCGTCGATTGCCGCCGCCGCCAGATGTTTGCTCGCCAGCGCATCACACAGCGCCGGAATACCCACCACAGTACCGCGCGAAGCATTAATCAG < SRR4302543.7385430/94‑1 (MQ=60)
ATACGTCGATTGCCGCCCCCGCCAGATGTTTGCTCGCCAGCGCATCACACAGCGCCGGAATACCCACCACAGTACCGCGCGAAGCATTAATCAG > SRR4302543.1572109/1‑94 (MQ=60)
ATACGTCGATTGCCGCCCCCGCCAGATGTTTGCTCGCCAGCGCATCACACAGCGCCGGAATACCCACCACAGTACCGCGCGAAGCATTAATCAG > SRR4302543.3762803/1‑94 (MQ=60)
ATACGTCGATTGCCGCCCCCGCCAGATGTTTGCTCGCCAGCGCATCACACAGCGCCGGAATACCCACCACAGTACCGCGCGAAGCATTAATCAG > SRR4302543.7313690/1‑94 (MQ=60)
ATACGTCGATTGCCGCCCCCGCCAGATGTTTGCTCGCCAGCGCATCACACAGCGCCGGAATACCCACCACAGTACCGCGCGAAGCATTAATCAG < SRR4302543.7385429/94‑1 (MQ=60)
ATACGTCGATTGCCGCCCCCGCCAGATGTTTGCTCGCCAGCGCATCACACAGCGCCGGAATACCCACCACAGTACCGCGCGAAGCATTAATCAG < SRR4302543.6215981/94‑1 (MQ=60)
TACGTCGATTGCCGCCCCCGCCAGATGTTTGCTCGCCAGCGCATCACACAGCGCCGGAATACCCACCACAGTACCGCGCGAAGCATTAATCAGC < SRR4302543.7324009/94‑1 (MQ=60)
TACGTCGATTGCCGCCCCCGCCAGATGTTTGCTCGCCAGCGCATCACACAGCGCCGGAATACCCACCACAGTACCGCGCGAAGCATTAATCAGC < SRR4302543.3268513/94‑1 (MQ=60)
ACGTCGATTGCCGCCCCCGCCAGATGTTTGCTCGCCAGCGCATCACACAGCGCCGGAATACCCACCACAGTACCGCGCGAAGCATTAATCAGCA > SRR4302543.7344253/1‑94 (MQ=60)
ACGTCGATTGCCGCCCCCGCCAGATGTTTGCTCGCCAGCGCATCACACAGCGCCGGAATACCCACCACAGTACCGCGCGAAGCATTAATCAGCA < SRR4302543.3539808/94‑1 (MQ=60)
CGTCGATTGCCGCCCCCGCCAGATGTTTGCTCGCCAGCGCATCACACAGCGCCGGAATACCCACCACAGTACCGCGCGAAGCATTAATCAGCAG > SRR4302543.7960743/1‑94 (MQ=60)
CGTCGATTGCCGCCCCCGCCAGATGTTTGCTCGCCAGCGCATCACACAGCGCCGGAATACCCACCACAGTACCGCGCGAAGCATTAATCAGCAG < SRR4302543.7195847/94‑1 (MQ=60)
CGTCGATTGCCGCCCCCGCCAGATGTTTGCTCGCCAGCGCATCACACAGCGCCGGAATACCCACCACAGTACCGCGCGAAGCATTAATCAGCAG < SRR4302543.3711169/94‑1 (MQ=60)
CGTCGATTGCCGCCCCCGCCAGATGTTTGCTCGCCAGCGCATCACACAGCGCCGGAATACCCACCACAGTACCGCGCGAAGCATTAATCAGCAG < SRR4302543.5737014/94‑1 (MQ=60)
CGTCGATTGCCGCCCCCGCCAGATGTTTGCTCGCCAGCGCATCACACAGCGCCGGAATACCCACCACAGTACCGCGCGAAGCATTAATCAGCAG < SRR4302543.5544747/94‑1 (MQ=60)
GTCGATTGCCGCCCCCGCCAGATGTTTGCTCGCCAGCGCATCACACAGCGCCGGAATACCCACCACAGTACCGCGCGAAGCATTAATCAGCAGC < SRR4302543.4677010/94‑1 (MQ=60)
GTCGATTGCCGCCCCCGCCAGATGTTTGCTCGCCAGCGCATCACACAGCGCCGGAATACCCACCACAGTACCGCGCGAAGCATTAATCAGCAGC > SRR4302543.7092811/1‑94 (MQ=60)
TCGATTGCCGCCCCCGCCAGATGTTTGCTCGCCAGCGCATCACACAGCGCCGGAATACCCACCACAGTACCGCGCGAAGCATTAATCAGCAGCG < SRR4302543.2990982/94‑1 (MQ=60)
CGATTGCCGCCCCCCCCAGATGTTTGCCCGCCAGCGCATCACACAGCGCCGGAATACCCACCACAGTACCGCGCGAAGCATTAATCAGCAGCGA < SRR4302543.6625476/94‑1 (MQ=60)
GATTGCCGCCCCCGCCAGATGTTTGCTCGCCAGCGCATCACACAGCGCCGGAATACCCACCACAGTACCGCGCGAAGCATTAATCAGCAGCGAG < SRR4302543.1942932/94‑1 (MQ=60)
GATTGCCGCCCCCGCCAGATGTTTGCTCGCCAGCGCATCACACAGCGCCGGAATACCCACCACAGTACCGCGCGAAGCATTAATCAGCAGCGAG < SRR4302543.288783/94‑1 (MQ=60)
ATTGCCGCCCCCGCCAGATGTTTGCTCGCCAGCGCATCACACAGCGCCGGAATACCCACCACAGTACCGCGCGAAGCATTAATCAGCAGCGAGC > SRR4302543.839760/1‑94 (MQ=60)
TGCCGCCCCCGCCAGATGTTTGCTCGCCAGCGCATCACACAGCGCCGGAATCCCCACCACAGTACCGCGCGAAGCATTAATCAGCAGCGAGCCG < SRR4302543.544838/94‑1 (MQ=60)
GCCGCCCCCGCCAGATGTTTGCTCGCCAGCGCATCACACAGCGCCGGAATACCCACCACAGTACCGCGCGAAGCATTAATCAGCAGCGAGCCGG < SRR4302543.1481182/94‑1 (MQ=60)
CCGCCCCCGCCAGATGTTTGCTCGCCAGCGCATCACACAGCGCCGGAATACCCACCACAGTACCGCGCGAAGCATTAATCAGCAGCGAGCCGGG < SRR4302543.1260484/94‑1 (MQ=60)
CCGCCCCCGCCAGATGTTTGCTCGCCAGCGCATCACACAGCGCCGGAATACCCACCACAGTACCGCGCGAAGCATTAATCAGCAGCGAGCCGGG > SRR4302543.545444/1‑94 (MQ=60)
CCGCCCCCGCCAGATGTTTGCTCGCCAGCGCATCACACAGCGCCGGAATACCCACCACAGTACCGCGCGAAGCATTAATCAGCAGCGAGCCGGG < SRR4302543.1143831/94‑1 (MQ=60)
CGCCCCCGCCAGATGTTTGCTCGCCAGCGCATCACACAGCGCCGGAATACCCACCACAGTACCGCGCGAAGCATTAATCAGCAGCGAGCCGGGC > SRR4302543.5187694/1‑94 (MQ=60)
CGCCCCCGCCAGATGTTTGCTCGCCAGCGCATCACACAGCGCCGGAATACCCACCACAGTACCGCGCGAAGCATTAATCAGCAGCGAGCCGGGC > SRR4302543.3608968/1‑94 (MQ=60)
GCCCCCGCCAGATGTTTGCTCGCCAGCGCATCACACAGCGCCGGAATACCCACCACAGTACCGCGCGAAGCATTAATCAGCAGCGATCCGGGCT < SRR4302543.1840646/94‑1 (MQ=60)
GCCCCCGCCAGATGTTTGCTCGCCAGCGCATCACACAGCGCCGGAATACCCACCACAGTACCGCGCGAAGCATTAATCAGCAGCGAGCCGGGCT < SRR4302543.1436568/94‑1 (MQ=60)
CCCCCCGCCAGATGTTTGCTCGCCAGCGCATCACACAGCGCCGGAATACCCACCACAGTACCGCGCGAAGCATTAATCAGCAGCGAGCCGGGCT < SRR4302543.7504960/94‑1 (MQ=60)
CCCCCGCCAGATGTTTGCTCGCCAGCGCATCACACAGCGCCGGAATACCCACCACAGTACCGCGCGAAGCATTAATCAGCAGCGAGCCGGGCTT > SRR4302543.4282255/1‑94 (MQ=60)
CCCCGCCAGATGTTTGCTCGCCAGCGCATCACACAGCGCCGGAATACCCACCACAGTACCGCGCGAAGCATTAATCAGCAGCGAGCCGGGCTTC < SRR4302543.1329988/94‑1 (MQ=60)
CCCCGCCAGATGTTTGCTCGCCAGCGCATCACACAGCGCCGGAATACCCACCACAGTACCGCGCGAAGCATTAATCAGCAGCGAGCCGGGCTGC > SRR4302543.4996134/1‑94 (MQ=60)
CCCCGCCAGATGTTTGCTCGCCAGCGCATCACACAGCGCCGGAATACCCACCACAGTACCGCGCGAAACATTAATCAGCAGCGAGCCGGGCTTC < SRR4302543.2913773/94‑1 (MQ=60)
CCCGCCAGATGTTTGCTCGCCAGCGCATCACACAGCGCCGGAATACCCACCACAGTACCGCGCGAAGCATTAATCAGCAGCGAGCCGGGCTTCA < SRR4302543.7389233/94‑1 (MQ=60)
CCGCCAGATGTTTGCTCGCCAGCGCATCACACAGCGCCGGAATACCCACCACAGTACCGCGCGAAGCATTAATCAGCAGCGAGCCGGGCTTCAT > SRR4302543.4157633/1‑94 (MQ=60)
CCGCCAGATGTTTGCTCGCCAGCGCATCACACAGCGCCGGAATACCCACCACAGTACCGCGCGAAGCATTAATCAGCAGCGAGCCGGGCTTCAT > SRR4302543.6377561/1‑94 (MQ=60)
CGCCAGATGTTTGCTCGCCAGCGCATCACACAGCGCCGGAATACCCACCACAGTACCGCGCGAAGCATTAATCAGCAGCGAGCCGGGCTTCATT > SRR4302543.1305944/1‑94 (MQ=60)
GCCAGATGTTTGCTCGCCAGCGCATCACACAGCGCCGGAATACCCACCACAGTACCGCGCGAAGCATTAATCAGCAGCGAGCCGGGCTTCATTA < SRR4302543.4392957/94‑1 (MQ=60)
CCAGATGTTTGCTCGCCAGCGCATCACACAGCGCCGGAATACCCACCACAGTACCGCGCGAAGCATTAATCAGCAGCGAGCCGGGCTTCATTAG < SRR4302543.4309520/94‑1 (MQ=60)
CCAGATGTTTGCTCGCCAGCGCATCACACAGCGCCGGAATACCCACCACAGTACCGCGCGAAGCATTAATCAGCAGCGAGCCGGGCTTCATTAG < SRR4302543.7058791/94‑1 (MQ=60)
CCAGATGTTTGCTCGCCAGCGCATCACACAGCGCCGGAATACCCACCACAGTACCGCGCGAAGCATTAATCAGCAGCGAGCCGGGCTTCATTAG < SRR4302543.4401904/94‑1 (MQ=60)
CAGATGTTTGCTCGCCAGCGCATCACACAGCGCCGGAATACCCACCACAGTACCGCGCGAAGCATTAATCAGCAGCGAGCCGGGCTTCATTAGT < SRR4302543.2943197/94‑1 (MQ=60)
CAGATGTTTGCTCGCCAGCGCATCACACAGCGCCGGAATACCCACCACAGTACCGCGCGAAGCATTAATCAGCAGCGAGCCGGGCTTCATTAGT < SRR4302543.6546046/94‑1 (MQ=60)
CAGATGTTTGCTCGCCAGCGCATCACACAGCGCCGGAATACCCACCACAGTACCGCGCGAAGCATTAATCAGCAGCGAGCCGGGCTTCATTAGT > SRR4302543.7445057/1‑94 (MQ=60)
CAGATGTTTGCTCGCCAGCGCATCACACAGCGCCGGAATACCCACCACAGTACCGCGCGAAGCATTAATCAGCAGCGAGCCGGGCTTCATTAGT > SRR4302543.2917542/1‑94 (MQ=60)
CAGATGTTTGCTCGCCAGCGCATCACACAGCGCCGGAATACCCACCACAGTACCGCGCGAAGCATTAATCAGCAGCGAGCCGGGCTTCATTAGG > SRR4302543.1259651/1‑94 (MQ=60)
AGATGTTTGCTCGCCAGCGCATCACACAGCGCCGGAATACCCACCACAGTACCGCGCGAAGCATTAATCAGCAGCGAGCCGGGCTTCATTAGTG < SRR4302543.6836163/94‑1 (MQ=60)
AGATGTTTGCTCGCCAGCGCATCACACAGCGCCGGAATACCCACCACAGTACCGCGCGAAGCATTAATCAGCAGCGAGCCGGGCTTCATTAGTG < SRR4302543.5276269/94‑1 (MQ=60)
AGATGTTTGCTCGCCAGCGCATCACACAGCGCCGGAATACCCACCACAGTACCGCGCGAAGCATTAATCAGCAGCGAGCCGGGCTTCATTAGTG > SRR4302543.6577421/1‑94 (MQ=60)
ATGTTTGCTCGCCAGCGCATCACACAGCGCCGGAATACCCACCACAGTACCGCGCGAAGCATTAATCAGCAGCGAGCCGGGCTTCATTAGTGAA < SRR4302543.5505629/94‑1 (MQ=60)
ATGTTTGCTCGCCAGCGCATCACACAGCGCCGGAATACCCACCACAGTACCGCGCGAAGCATTAATCAGCAGCGAGCAGGGCTTCATTAGTGAA > SRR4302543.7920302/1‑94 (MQ=60)
TGTTTGCTCGCCAGCGCATCACACAGCGCCGGAATACCCACCACAGTACCGCGCGAAGCATTAATCAGCAGCGAGCCGGGCTTCATTAGTGAAA < SRR4302543.7222886/94‑1 (MQ=60)
TGTTTGCTCGCCAGCGCATCACACAGCGCCGGAATACCCACCACAGTACCGCGCGAAGCATTAATCAGCAGCGAGCCGGGCTTCATTAGTGAAA < SRR4302543.6664037/94‑1 (MQ=60)
GTTTGCTCGCCAGCGCATCACACAGCGCCGGAATACCCACCACAGTACCGCGCGAAGCATTAATCAGCAGCGAGCCGGGCTTCATTAGTGAAAT > SRR4302543.5148079/1‑94 (MQ=60)
GTTTGCTCGCCAGCGCATCACACAGCGCCGGAATACCCACCACAGTACCGCGCGAAGCATTAATCAGCAGCGAGCCGGGCTTCATTAGTGAAAT > SRR4302543.5148078/1‑94 (MQ=60)
GTTTGCTCGCCAGCGCATCACACAGCGCCGGAATACCCACCACAGTACCGCGCGAAGCATTAATCAGCAGCGAGCCGGGCTTCATTAGTGAAAT > SRR4302543.2185156/1‑94 (MQ=60)
GTTTGCTCGCCAGCGCATCACACAGCGCCGGAATACCCACCACAGTACCGCGCGAAGCATTAATCAGCAGCGAGCCGGGCTTCATTAGTGAAAT > SRR4302543.2184944/1‑94 (MQ=60)
TTTGCTCGCCAGCGCATCACACAGCGCCGGAATACCCACCACAGTACCGCGCGAAGCATTAATCAGCAGCGAGCCGGGCTTCATTAGTGAAATT < SRR4302543.979203/94‑1 (MQ=60)
TTGGCTCGCCAGCGCATCACACAGCGCCGGAATACCCACCACAGTACCGCGCGAAGCATTAATCAGCAGCGAGCCGGGCTTCATTAGTGAAATT < SRR4302543.1938917/94‑1 (MQ=60)
TTGCTCGCCAGCGCATCACACAGCGCCGGAATACCCACCACAGTACCGCGCGAAGCATTAATCAGCAGCGAGCCGGGCTTCATTAGTGAAATTT > SRR4302543.4988397/1‑94 (MQ=60)
TTGCTCGCCAGCGCATCACACAGCGCCGGAATACCCACCACAGTACCGCGCGAAGCATTAATCAGCAGCGAGCCGGGCTTCATTAGTGAAATTT < SRR4302543.3093493/94‑1 (MQ=60)
TGCTCGCCAGCGCATCACACAGCGCCGGAATACCCACCACAGTACCGCGCGAAGCATTAATCAGCAGCGAGCCGGGCTTCATTAGTGAAATTTC < SRR4302543.4320675/94‑1 (MQ=60)
CTCGCCAGCGCATCACACAGCGCCGGAATACCCACCACAGTACCGCGCGAAGCATTAATCAGCAGCGAGCCGGGCTTCATTAGTGAAATTTCTT > SRR4302543.2725507/1‑94 (MQ=60)
CTCGCCAGCGCATCACACAGCGCCGGAATACCCACCACAGTACCGCGCGAAGCATTAATCAGCAGCGAGCCGGGCTTCATTAGTGAAATTTCTT > SRR4302543.4148908/1‑94 (MQ=60)
CTCGCCAGCGCATCACACAGCGCCGGAATACCCACCACAGTACCGCGCGAAGCATTAATCAGCAGCGAGCCGGGCTTCATTAGTGAAATTTCTT > SRR4302543.6305944/1‑94 (MQ=60)
TCGCCAGCGCATCACACAGCGCCGGAATACCCACCACAGTACCGCGCGAAGCATTAATCAGCAGCGAGCCGGGCTTCATTAGTGAAATTTCTTT < SRR4302543.5863218/94‑1 (MQ=60)
CGCCAGCGCATCACACAGCGCCGGAATACCCACCACAGTACCGCGCGAAGCATTAATCAGCAGCGAGCCGGGCTTCATTAGTGAAATTTCTTTC < SRR4302543.4190202/94‑1 (MQ=60)
CGCCAGCGCATCACACAGCGCCGGAATACCCACCACAGTACCGCGCGAAGCATTAATCAGCAGCGAGCCGGGCTTCATTAGTGAAATTTCTTTC < SRR4302543.4190201/94‑1 (MQ=60)
CGCCAGCGCATCACACAGCGCCGGAATACCCACCACAGTACCGCGCGAAGCATTAATCAGCAGCGAGCCGGGCTTCATTAGTGAAATTTCTTTC < SRR4302543.1039724/94‑1 (MQ=60)
CGCCAGCGCATCACACAGCGCCGGAATACCCACCACAGTACCGCGCGAAGCATTAATCAGCAGCGAGCCGGGCTTCATTAGTGAAATTTCTTTC < SRR4302543.6114141/94‑1 (MQ=60)
CGCCAGCGCATCACACAGCGCCGGAATACCCACCACAGTACCGCGCGAAGCATTAATCAGCAGCGAGCCGGGCTTCATTAGTGAAATTTCTTTC < SRR4302543.1787675/94‑1 (MQ=60)
CGCCAGCGCATCACACAGCGCCGGAATACCCACCACAGTACCGCGCGAAGCATTAATCAGCAGCGAGCCGGGCTTCATTAGTGAAATTTCTTTC > SRR4302543.521513/1‑94 (MQ=60)
CGACAGCGCATCACACAGCCCCGGAATCCCCACCACAGTACCGCGCGAAGCATTAATCAGCAGCGAGCCGGTCTTCATTAGTGAAATTTCTTTC < SRR4302543.3103454/94‑1 (MQ=60)
CAAGCGCACCACACAGCGCGGGAATACCCACCACAGTCCCGCGCGAAGCATTAAGCAGCAGCGAGCCGGGCTTCATTAGTGAAATTTCTTTCGC < SRR4302543.4247/94‑1 (MQ=60)
CAGCGCATCACACAGCGCCGGAATACCCACCACAGTACCGCGCGAAGCATTAATCAGCAGCGAGCCGGGCTTCATTAGTGAAATTTCTTTCGCG > SRR4302543.4108894/1‑94 (MQ=60)
CAGCGCATCACACAGCGCCGGAATACCCACCACAGTACCGCGCGAAGCATTAATCAGCAGCGAGCCGGGCTTCATTAGTGAAATTTCTTTCGCG > SRR4302543.3789065/1‑94 (MQ=60)
CGCATCACACAGCGCCGGAATACCCACCACAGTACCGCGCGAAGCATTAATCAGCAGCGAGCCGGGCTTCATTAGTGAAATTTCTTTCGCGCCC > SRR4302543.371827/1‑94 (MQ=60)
CGCATCACACAGCGCCGGAATACCCACCACAGTACCGCGCGAAGCATTAATCAGCAGCGAGCCGGGCTTCATTAGTGAAATTTCTTTCGCGCCC > SRR4302543.3623288/1‑94 (MQ=60)
GCATCACACAGCGCCGGAATACCCACCACAGTACCGCGCGAAGCATTAATCAGCAGCGAGCCGGGCTTCATTAGTGAAATTTCTTTCGCGCCCA < SRR4302543.7567246/94‑1 (MQ=60)
GCATCACACAGCGCCGGAATACCCACCACAGTACCGCGCGAAGCATTAATCAGCAGCGAGCCGGGCTTCATTAGTGAAATTTCTTTCGCGCCCA > SRR4302543.1205536/1‑94 (MQ=60)
GCATCACACAGCGCCGGAATACCCACCACAGTACCGCGCGAAGCATTAATCAGCAGCGAGCCGGGCTTCATTAGTGAAATTTCTTTCGCGCCCA > SRR4302543.7162090/1‑94 (MQ=60)
ATCACACAGCGCCGGAATACCCACCACAGTACCGCGCGAAGCATTAATCAGCAGCGAGCCGGGCTTCATTAGTGAAATTTCTTTCGCGCCCATC > SRR4302543.2862900/1‑94 (MQ=60)
ATCACACAGCGCCGGAATACCCACCACAGTACCGCGCGAAGCATTAATCAGCAGCGAGCCGGGCTTCATTAGTGAAATTTCTTTCGCGCCCATC > SRR4302543.4868042/1‑94 (MQ=60)
ATCACACAGCGCCGGAATACCCACCACAGTACCGCGCGAAGCATTAATCAGCAGCGAGCCGGGCTTCATTAGTGAAATTTCTTTCGCGCCCATC > SRR4302543.1920877/1‑94 (MQ=60)
ATCACACAGCGCCGGAATACCCACCACAGTACCGCGCGAAGCATTAATCAGCAGCGAGCCGGGCTTCATTAGTGAAATTTCTTTCGCGCCCATC > SRR4302543.20202/1‑94 (MQ=60)
ATCACACAGCGCCGGAATACCCACCACAGTACCGCGCGAAGCATTAATCAGCAGCGAGCCGGGCTTCATTAGTGAAATTTCTTTCGCGCCCATC > SRR4302543.1733073/1‑94 (MQ=60)
ATCACACAGCGCCGGAATACCCACCACAGTACCGCGCGAAGCATTAATCAGCAGCGAGCCGGGCTTCATTAGTGAAATTTCTTTCGCGCCCATC > SRR4302543.1131251/1‑94 (MQ=60)
TCACACAGCGCCGGAATACCCACCACAGTACCGCGCGAAGCATTAATCAGCAGCGAGCCGGGCTTCATTAGTGAAATTTCTTTCGCGCCCATCA < SRR4302543.3068263/94‑1 (MQ=60)
TCACACAGCGCCGGAATACCCACCACAGTACCGCGCGAAGCATTAATCAGCAGCGAGCCGGGCTTCATTAGTGAAATTTCTTTCGCGCCCATCA > SRR4302543.7536202/1‑94 (MQ=60)
CCCACAGCGCCGGAATACCCACCACAGTACCGCGCGAAGCATTAATCAGCAGCGAGCCGGGCTTCATTAGTGAAATTTCTTTCGCGCCCATCAT < SRR4302543.5530579/94‑1 (MQ=60)
CACACAGCGCCGGAATACCCACCACAGTACCGCGCGAAGCATTAATCAGCAGCGAGCCGGGCTTCATTAGTGAAATTTCTTTCGCGCCCATCAT < SRR4302543.5779862/94‑1 (MQ=60)
CACACAGCGCCGGAATACCCACCACAGTACCGCGCGAAGCATTAATCAGCAGCGAGCCGGGCTTCATTAGTGAAATTTCTTTCGCGCCCATCAT < SRR4302543.4645892/94‑1 (MQ=60)
ACACAGCGCCGGAATACCCACCACAGTACCGCGCGAAGCATTAATCAGCAGCGAGCCGGGCTTCATTAGTGAAATTTCTTTCGCGCCCATCATA < SRR4302543.1669794/94‑1 (MQ=60)
ACACAGCGCCGGAATACCCACCACAGTACCGCGCGAAGCATTAATCAGCAGCGAGCCGGGCTTCATTAGTGAAATTTCTTTCGCGCCCATCATA < SRR4302543.1669795/94‑1 (MQ=60)
CACAGCGCCGGAATACCCACCACAGTACCGCGCGAAGCATTAATCAGCAGCGAGCCGGGCTTCATTAGTGAAATTTCTTTCGCGCCCATCATAT > SRR4302543.2158170/1‑94 (MQ=60)
CACAGCGCCGGAATACCCACCACAGTACCGCGCGAAGCATTAATCAGCAGCGAGCCGGGCTTCATTAGTGAAATTTCTTTCGCGCCCATCATAT < SRR4302543.7269618/94‑1 (MQ=60)
CACAGCGCCGGAATACCCACCACAGTACCGCGCGAAGCATTAATCAGCAGCGAGCCGGGCTTCATTAGTGAAATTTCTTTCGCGCCCATCATAT < SRR4302543.134683/94‑1 (MQ=60)
CACAGCGCCGGAATACCCACCACAGTACCGCGCGAAGCATTAATCAGCAGCGAGCCGGGCTTCATTAGTGAAATTTCTTTCGCGCCCATCATAT > SRR4302543.6933623/1‑94 (MQ=60)
ACAGCGCCGGAATACCCACCACAGTACCGCGCGAAGCATTAATCAGCAGCGAGCCGGGCTTCATTAGTGAAATTTCTTTCGCGCCCATCATATT < SRR4302543.1837368/94‑1 (MQ=60)
CAGCGCCGGAATACCCACCACAGTACCGCGCGAAGCATTAATCAGCAGCGAGCCGGGCTTCATTAGTGAAATTTCTTTCGCGCCCATCATATTT < SRR4302543.2988606/94‑1 (MQ=60)
CAGCGCCGGAATACCCACCACAGTACCGCGCGAAGCATTAATCAGCAGCGAGCCGGGCTTCATTAGTGAAATTTCTTTCGCGCCCATCATATTT < SRR4302543.4860070/94‑1 (MQ=60)
AGCGCCGGAATACCCACCACAGTACCGCGCGAAGCATTAATCAGCAGCGAGCCGGGCTTCATTAGTGAAATTTCTTTCGCGCCCATCATATTTT > SRR4302543.5920901/1‑94 (MQ=60)
GCGCCGGAATACCCACCACAGTACCGCGCGAAGCATTAATCAGCAGCGAGCCGGGCTTCATTAGTGAAATTTCTTTCGCGCCCATCATATTTTT < SRR4302543.2972966/94‑1 (MQ=60)
CGCCGGAATACCCACCACAGTACCGCGCGAAGCATTAATCAGCAGCGAGCCGGGCTTCATTAGTGAAATTTCTTTCGCGCCCATCATATTTTTG > SRR4302543.3336116/1‑94 (MQ=60)
GCCGGAATACCCACCACAGTACCGCGCGAAGCATTAATCAGCAGCGAGCCGGGCTTCATTAGTGAAATTTCTTTCGCGCCCATCATATTTTTGG > SRR4302543.1001169/1‑94 (MQ=60)
CCGGAATACCCACCACAGTACCGCGCGAAGCATTAATCAGCAGCGAGCCGGGCTTCATTAGTGAAATTTCTTTCGCGCCCATCATATTTTTGGT < SRR4302543.3180690/94‑1 (MQ=60)
CCGGAATACCCACCACAGTACCGCGCGAAGCATTAATCAGCAGCGAGCCGGGCTTCATTAGTGAAATTTCTTTCGCGCCCATCATATTTTTGGT < SRR4302543.6599846/94‑1 (MQ=60)
CGGAATACCCACCACAGTACCGCGCGAAGCATTAATCAGCAGCGAGCCGGGCTTCATTAGTGAAATTTCTTTCGCGCCCATCATATTTTTGGTG < SRR4302543.4445496/94‑1 (MQ=60)
GGAATACCCACCACAGTACCGGGCGAAGCATTAATCAGCAGCGAGCAGGGGTTCATTACGGAAATTTCTTTCGCGCCCATCATATTTTTtgcga > SRR4302543.4749596/1‑89 (MQ=60)
GGAATACCCACCACAGTACCGCGCGAAGCATTAATCAGCAGCGAGCCGGGCTTCATTAGTGAAATTTCTTTCGCGCCCATCATATTTTTGGTGG > SRR4302543.4749594/1‑94 (MQ=60)
ATACCCACCACAGTACCGCGCGAAGCATTAATCAGCAGCGAGCCGGGCTTCATTAGTGAAATTTCTTTCGCGCCCATCATATTTTTGGTGGACG > SRR4302543.1687477/1‑94 (MQ=60)
ATACCCACCACAGTACCGCGCGAAGCATTAATCAGCAGCGAGCCGGGCTTCATTAGTGAAATTTCTTTCGCGCCCATCATATTTTTGGTGGACG > SRR4302543.3989890/1‑94 (MQ=60)
TACCCACCCCAGTACCGCGCCAAGCATTAATCAGCAGCGAGCCGGGCTTCATTAGTGAAATTTCTTTCGCGCCCATCATATTTTTGGTGGACGG < SRR4302543.2705547/94‑1 (MQ=60)
TACCCACCACAGTACCGCGCGAAGCATTAATCAGCAGCGAGCCGGGCTTCATTAGTGAAATTTCTTTCGCGCCCATCATATTTTTGGTGGACGG > SRR4302543.2555946/1‑94 (MQ=60)
CCCACCACAGTACCGCGCGAAGCATTAATCAGCAGCGAGCCGGGCTTCATTAGTGAAATTTCTTTCGCGCCCATCATATTTTTGGTGGACGGAT < SRR4302543.3280189/94‑1 (MQ=60)
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GGATCGCTATTGGTCGCCGGTTCCGTCGGGAATACGTCGATTGCCGCCCCCGCCAGATGTTTGCTCGCCAGCGCATCACACAGCGCCGGAATATCCACCACAGTACCGCGCGAAGCATTAATCAGCAGCGAGCCGGGCTTCATTAGTGAAATTTCTTTCGCGCCCATCATATTTTTGGTGGACGGAT > NC_000913/3055604‑3055790
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| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
