Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I1 R1	1696	279.3	15874187	97.8%	15524954	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,078,245	C→G	G470G (GGG→GGC)	tktA ←	transketolase 1 isozyme

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,078,245	0	C	G	100.0%	921.2 / NA	295	G470G (GGG→GGC)	tktA	transketolase 1 isozyme
Reads supporting (aligned to +/- strand): ref base C (0/0); new base G (155/140); total (155/140)

Only 100 of 319 total aligned reads displayed.

CGCGGATTCAACCTGGTCACACGGACGCCATGTAGACATGTTCGGGGTTACGCGCAGAGAAGCGACCTGCTCAACCGGCTGGTGAGTCGGCCCGTCTTCGCCCAGACCGATGGAGTCGTGGGTGTAAACCATCACCTGACGCTGTTTCATCAGCGCAGCCATACGTACGGCGTTACGTGC  >  NC_000913/3078155‑3078334

 gcgGATTCAACCTGGTCACACGGACGCCATGTAGACATGTTCGGGGTTACGCGCAGAGAAGCGACTTGCTCAACCGGCTGGTGAGTCGGGCCg                                                                                        >  2:4233541/1‑93 (MQ=255)

 gcgGATTCAACCTGGTCAAACGGACGCCATGTAGACATGTTCGGGGTTACGCGCAGAGTAGCGACTTGCTCAACCGGCTGGTGAGTCGGGCCg                                                                                        >  2:6576823/1‑93 (MQ=255)

   ggATTCAACCTGGTCACACGGACGCCATGTAGACATGTTCGGGGTTACGCGCAGAGAAGCGACTTGCTCAACCGGCTGGTGAGTCGGGCCGTc                                                                                      <  1:1438616/93‑1 (MQ=255)

   ggATTCAACCTGGTCACACGGACGCCATGTAGACATGTTCGGGGTTACGCGCAGAGAAGCGACTTGCTCAACCGGCTGGTGAGTCGGGCCGTc                                                                                      <  2:33065/93‑1 (MQ=255)

   ggATTCAACCTGGTCACACGGACGCCATGTAGACATGTTCGGGGTTACGCGCAGAGAAGCGACTTGCTCAACCGGCTGGTGAGTCGGGCCGTc                                                                                      >  1:5728519/1‑93 (MQ=255)

    gATTCAACCTGGTCACACGGACGCCATGTAGACATGTTCGGGGTTACGCGCAGAGAAGCGACTTGCTCAACCGGCTGGTGAGTCGGGCCGTCt                                                                                     <  2:810871/93‑1 (MQ=255)

    gATTCAACCTGGTCACACGGACGCCATGTAGACATGTTCGGGGTTACGCGCAGAGAAGCGACTTGCTCAACCGGCTGGTGAGTCGGGCCGTCt                                                                                     >  1:6947346/1‑93 (MQ=255)

    gATTCAACCGGGTCACACGGACGCCATGTAGACATGTTCGGGGGTACGCGCAGAGAAGCGACTTGCTCAACCGGCTGGTGAGTCGGGCCGTCt                                                                                     >  2:7922115/1‑93 (MQ=255)

     aTTCACCCTGGTCACACGGCCGCCATGTAGACATGTTCGGGGTTACGCGCAGAGAAGCGACTTGCTCACCCGGCTGGTGAGTCGGGCCGTCtt                                                                                    <  2:4990430/93‑1 (MQ=255)

     aTTCAACCTGGTCACACGGACGCCATGTAGACATGTTCGGGGTTACGCGCAGAGAAGCGACTTGCTCAACCGGCTGGTGAGTCGGGCCGTCtt                                                                                    >  1:2490958/1‑93 (MQ=255)

      ttCAACCTGGTCACACGGACGCCATGTAGACATGTTCGGGGTTACGCGCAGAGAAGCGACTTGCTCAACCGGCTGGTGAGTCGGGCCGTCTTc                                                                                   >  1:3793864/1‑93 (MQ=255)

      ttCAACCTGGTCACACGGACGCCATGTAGACATGTTCGGGGTTACGCGCAGAGAAGCGACTTGCTCAACCGGCTGGTGAGTCGGGCCGTCTTc                                                                                   >  2:6872452/1‑93 (MQ=255)

      ttCAACCTGGTCACACGGACGCCATGTAGACATGTTCGGGGTTACGCGCAGAGAAGCGACTTGCTCAACCGGCTGGTGAGTCGGGCCGTCTTc                                                                                   <  2:5780488/93‑1 (MQ=255)

          aCCTGGTCACACGGACGCCATGTAGACATGTTCGGGGTTACGCGCAGAGAAGCGACTTGCTCAACCGGCTGGTGAGTCGGGCCGTCTTCGccc                                                                               <  1:236775/93‑1 (MQ=255)

           ccTGGTCACACGGACGCCATGTAGACATGTTCGGGGTTACGCGCAGAGAAGCGACTTGCTCAACCGGCTGGTGAGTCGGGCCGTCTTCGCCCa                                                                              <  1:7057306/93‑1 (MQ=255)

             tGGTCACACGGACGCCATGTAGACATGTTCGGGGTTACGCGCAGAGAAGCGACTTGCTCAACCGGCTGGTGAGTCGGGCCGTCTTCGCCCAgc                                                                            >  2:4692439/1‑92 (MQ=255)

             tGGTCACACGGACGCCATGTAGACATGTTCGGGGTTACGCGCAGAGAAGCGACTTGCTCAACCGGCTGGTGAGTCGGGCCGTCTTCGCCCAGa                                                                            >  1:5446958/1‑93 (MQ=255)

              ggTCACACGGACGCCATGTAGACATGTTCGGGGTTACGCGCAGAGAAGCGACTTGCTCAACCGGCTGGTGAGTCGGGCCGTCTTCGCCCAGAc                                                                           <  2:1064709/93‑1 (MQ=255)

               gTCACACGGACGCCATGTAGACATGTTCGGGGTTACGCGCAGAGAAGCGACTTGCTCAACCGGCTGGTGAGTCGGGCCGTCTTCGCCCAGAcc                                                                          >  2:3721998/1‑93 (MQ=255)

                  acacGGACGCCATGTAGACATGTTCGGGGTTACGCGCAGAGAAGCGACTTGCTCAACCGGCTGGTGAGTCGGGCCGTCTTCGCCCAGACCGag                                                                       >  1:3615097/1‑92 (MQ=255)

                  acacGGACGCCATGTAGACATGTTCGGGGTTACGCGCAGAGAAGCGACTTGCTCAACCGGCTGGTGAGTCGGGCCGTCTTCGCCCAGACCGAt                                                                       <  1:4967448/93‑1 (MQ=255)

                  acacGGACGCCATGTAGACATGTTCGGGGTTACGCGCAGAGAAGCGACTTGCTCAACCGGCTGGTGAGTCGGGCCGTCTTCGCCCAGACCGAt                                                                       >  1:3341327/1‑93 (MQ=255)

                   cacGGACGCCATGTAGACATGTTCGGGGTTACGCGCAGAGAAGCGACTTGCTCAACCGGCTGGTGAGTCGGGCCGTCTTCGCCCAGACCGATg                                                                      >  1:7267344/1‑93 (MQ=255)

                   cacGGACGCCATGTAGACATGTTCGGGGTTACGCGCAGAGAAGCGACTTGCTCAACCGGCTGGTGAGTCGGGCCGTCTTCGCCCAGACCGATg                                                                      <  1:1177865/93‑1 (MQ=255)

                      ggACGCCATGTAGACATGTTCGGGGTTACGCGCAGAGAAGCGACTTGCTCAACCGGCTGGTGAGTCGGGCCGTCTTCGCCCAGACCGATGGAg                                                                   >  2:399074/1‑93 (MQ=255)

                       gACGCCATGTAGACATGTTCGGGGTTACGCGCAGAGAAGCGACTTGCTCAACCGGCTGGTGAGTCGGGCCGTCTTCGCCCAGACCGATGGAgc                                                                  >  2:2778218/1‑92 (MQ=255)

                       gACGCCATGTAGACATGTTCGGGGTTACGCGCAGAGAAGCGACTTGCTCAACCGGCTGGTGAGTCGGGCCGTCTTCGCCCAGACCGATGGAGt                                                                  <  2:1540055/93‑1 (MQ=255)

                       gACGCCATGTAGACATGTTCGGGGTTACGCGCAGAGAAGCGACTTGCTCAACCGGCTGGTGAGTCGGGCCGTCTTCGCCCAGACCGATGGAGt                                                                  <  1:3568759/93‑1 (MQ=255)

                          gCCATGTAGACATGTTCGGGGTTACGCGCAGAGAAGCGACTTGCTCAACCGGCTGGTGAGTCGGGCCGTCTTCGCCCAGACCGATGGAGTCgg                                                               >  2:1742591/1‑92 (MQ=255)

                           ccATGTAGACATGTTCGGGGTTACGCGCAGAGAAGCGACTTGCTCAACCGGCTGGTGAGTCGGGCCGTCTTCGCCCAGACCGATGGAGTCGTg                                                              <  2:2956483/93‑1 (MQ=255)

                           ccATGTAGACATGTTCGGGGTTACGCGCAGAGAAGCGACTTGCTCAACCGGCTGGTGAGTCGGGCCGTCTTCGCCCAGACCGATGGAGTCGTg                                                              <  1:2853009/93‑1 (MQ=255)

                            cATGTAGACATGTTCGGGGTTACGCGCAGAGAAGCGACTTGCTCAACCGGCTGGTGAGTCGGGCCGTCTTCGCCCAGACCGATGGAGTCGTgg                                                             >  2:2243768/1‑93 (MQ=255)

                             aTGTAGACATGTTCGGGGTTACGCGCAGAGAAGCGACTTGCTCAACCGGCTGGTGAGTCGGGCCGTCTTCGCCCAGACCGATGGAGTCGTggg                                                            <  2:3603377/93‑1 (MQ=255)

                             aTGTAGACATGTTCGGGGTTACGCGCAGAGAAGCGACTTGCTCAACCGGCTGGTGAGTCGGGCCGTCTTCGCCCAGACCGATGGAGTCGTggg                                                            <  1:6362382/93‑1 (MQ=255)

                              tGTAGACATGTTCGGGGTTACGCGCAGAGAAGCGACTTGCTCAACCGGCTGGTGAGTCGGGCCGTCTTCGCCCAGACCGATGGAGTCGTgggg                                                           >  2:440800/1‑92 (MQ=255)

                              tGTAGACATGTTCGGGGTTACGCGCAGAGAAGCGACTTGCTCAACCGGCTGGTGAGTCGGGCCGTCTTCGCCCAGACCGATGGAGTCGTGGgt                                                           >  2:7769021/1‑93 (MQ=255)

                              tGTAGACATGTTCGGGGTTACGCGCAGAGAAGCGACTTGCTCAACCGGCTGGTGAGTCGGGCCGTCTTCGCCCAGACCGATGGAGTCGTGGgt                                                           <  1:7409689/93‑1 (MQ=255)

                                tAGACATGTTCGGGGTTACGCGCAGAGAAGCGACTTGCTCAACCGGCTGGTGAGTCGGGCCGTCTTCGCCCAGACCGATGGAGTCGTGGgtgt                                                         <  1:6014126/93‑1 (MQ=255)

                                  gACATGTTCGGGGTTACGCGCAGAGAAGCGACTTGCTCAACCGGCTGGTGAGTCGGGCCGTCTTCGCCCAGACCGATGGAGCAGTGGGTGTaa                                                       >  1:1018941/1‑93 (MQ=255)

                                   aCATGTTCGGGGTTACGCGCAGAGAAGCGACTTGCTCAACCGGCTGGTGAGTCGGGCCGTCTTCGCCCAGACCGATGGAGTCGTGGGTGTaaa                                                      <  1:89769/93‑1 (MQ=255)

                                    cATGTTCGGGGTTACGCGCAGAGAAGCGACTTGCTCAACCGGCTGGTGAGTCGGGCCGTCTTCGCCCAGACCGATGGAGTCGTGGGTGTAAAc                                                     >  2:4310975/1‑93 (MQ=255)

                                    cATGTTCGGGGTTACGCGCAGAGAAGCGACTTGCTCAACCGGCTGGTGAGTCGGGCCGTCTTCGCCCAGACCGATGGAGTCGTGGGTGTAAAc                                                     <  1:7769022/93‑1 (MQ=255)

                                     aTGTTCGGGGTTACGCGCAGAGAAGCGACTTGCTCAACCGGCTGGTGAGTCGGGCCGTCTTCGCCCAGACCGATGGAGTCGTGGGTGTAAAcc                                                    >  1:4216730/1‑93 (MQ=255)

                                      tGTTCGGGGTTACGCGCAGAGAAGCGACTTGCTCAACCGGCTGGTGAGTCGGGCCGTCTTCGCCCAGACCGATGGAGTCGTGGGTGTAAACCa                                                   >  2:1356943/1‑93 (MQ=255)

                                       gtgcGGGGTTACTCGCAGAGAAGCGACTTGCTCATCCGGCTGGTGAGTCGGGCCGTCTTCGCCCAGACCGATGGAGTCGTGGGTGTAAACCAt                                                  <  2:1872606/90‑1 (MQ=255)

                                         tCGGGGTTACGCGCAGAGAAGCGACTTGCTCAACCGGCTGGTGAGTCGGGCCGTCTTCGCCCAGACCGATGGAGTCGTGGGTGTAAACCATCa                                                <  2:7722914/93‑1 (MQ=255)

                                         tCGGGGTTACGCGCAGAGAAGCGACTTGCTCAACCGGCTGGTGAGTCGGGCCGTCTTCGCCCAGACCGATGGAGTCGTGGGTGTAAACCATCa                                                <  1:2626339/93‑1 (MQ=255)

                                          cGGGGTTACGCGCAGAGAAGCGACTTGCTCAACCGGCTGGTGAGTCGTGCCGTCTTCGCCCAGACCGATGGAGTCGTGGGTGTAAACCATCAc                                               <  1:4426000/93‑1 (MQ=255)

                                          cGGGGTTACGCGCAGAGAAGCGACTTGCTCAACCGGCTGGTGAGTCGGGCCGTCTTCGCCCAGACCGATGGAGTCGTGGGTGTAAACCATCAc                                               <  1:2272031/93‑1 (MQ=255)

                                          cGGGGTTACGCGCAGAGAAGCGACTTGCTCAACCGGCTGGTGAGTCGGGCCGTCTTCGCCCAGACCGATGGAGTCGTGGGTGTAAACCATCAc                                               <  1:6745175/93‑1 (MQ=255)

                                           ggggTTACGCGCAGAGAAGCGACTTGCTCAACCGGCTGGTGAGTCGGGGCGTCTTCGCCCAGACCGATGGAGTCGTGGGTGTAAACCATCAcc                                              >  2:4497922/1‑93 (MQ=255)

                                           ggggTTACGCGCAGAGAAGCGACTTGCTCAACCGGCTGGTGAGTCGGGCCGTCTTCGCCCAGACCGATGGAGTCGTGGGTGTAAACCATCAcc                                              >  2:6405581/1‑93 (MQ=255)

                                           ggggTTACGCGCAGAGAAGCGACTTGCTCAACCGGCTGGTGAGTCGGGCCGTCTTCGCCCAGACCGATGGAGTCGTGGGTGTAAACCATCAcc                                              <  2:3905907/93‑1 (MQ=255)

                                           ggggTTACGCGCAGAGAAGCGACTTGCTCAACCGGCTGGTGAGTCGGGCCGTCTTCGCCCAGACCGATGGAGTCGTGGGTGTAAACCATCAcc                                              <  1:3016701/93‑1 (MQ=255)

                                              gTTACGCGCAGAGAAGCGACTTGCTCAACCGGCTGGTGAGTCGGGCCGTCTTCGCCCAGACCGATGGAGTCGTGGGTGTAAACCATCACCTGa                                           >  2:5941968/1‑93 (MQ=255)

                                               gtACGCGCAGAGAAGCGACTTGCTCAACCGGCTGGTGAGTCGGGCCGTCTTCGCCCAGACCGATGGAGTCGTGGGTGTAAACCATCACCTGAc                                          <  1:3288628/92‑1 (MQ=255)

                                                tACGCGCAGAGAAGCGACTTGCTCAACCGGCTGGTGAGTCGGGCCGTCTTCGCCCAGACCGATGGAGTCGTGGGTGTAAACCATCACCTGACg                                         >  2:1948714/1‑93 (MQ=255)

                                                   gcgcAGAGAAGCGACTTGCTCAACCGGCTGGTGAGTCGGGCCGTCTTCGCCCAGACCGATGGAGTCGTGGGTGTAAACCATCACCTGACGCTg                                      >  2:2653589/1‑93 (MQ=255)

                                                      cAGAGAAGCGACTTGCTCAACCGGCTGGTGAGTCGGGCCGTCTTCGCCCAGACCGATGGAGTCGTGGGTGTAAACCATCACCTGACGCTGttt                                   <  2:4771728/93‑1 (MQ=255)

                                                      cAGAGAAGCGACTTGCTCAACCGGCTGGTGAGTCGGGCCGTCTTCGCCCAGACCGATGGAGTCGTGGGTGTAAACCATCACCTGACGCTGttt                                   <  1:4856110/93‑1 (MQ=255)

                                                        gagaAGCGACTTGCTCAACCGGCTGGTGAGTCGGGCCGTCTTCGCCCAGACCGATGGAGTCGTGGGTGTAAACCATCACCTGACGCTGTTtca                                 <  2:5563326/93‑1 (MQ=255)

                                                        gagaAGCGACTTGCTCAACCGGCTGGTGAGTCGGGCCGTCTTCGCCCAGACCGATGGAGTCGTGGGTGTAAACCATCACCTGACGCTGTTtca                                 <  2:6185988/93‑1 (MQ=255)

                                                        gagaAGCGACTTGCTCAACCGGCTGGTGAGTCGGGCCGTCTTCGCCCAGACCGATGGAGTCGTGGGTGTAAACCATCACCTGACGCTGTTtca                                 >  1:4362617/1‑93 (MQ=255)

                                                         agaAGCGACTTGCTCAACCGGCTGGTGAGTCGGGCCGTCTTCGCCCAGACCGATGGAGTCGTGGGTGTAAACCATCACCTGACGCTGTTtcat                                >  1:2565221/1‑93 (MQ=255)

                                                         agaAGCGACTTGCTCAACCGGCTGGTGAGTCGGGCCGTCTTCGCCCAGACCGATGGAGTCGTGGGTGTAAACCATCACCTGACGCTGTTtcat                                <  2:6131921/93‑1 (MQ=255)

                                                          gaAGCGACTTGCTCATCCGGCTGGTGAGTCGGGCCTTCTTCGCCCAGACCGATGGAGTCGTGTGTGTAACCCATCACCTGACGCTGTTtcatc                               <  2:3752118/93‑1 (MQ=255)

                                                          gaAGCGACTTGCTCAACCGGCTGGTGAGTCGGGCCGTCTTCGCCCAGACCGATGGAGTCGTGGGTGTAAACCATCACCTGACGCTGTTtcatc                               <  1:1052375/93‑1 (MQ=255)

                                                          gaAGCGACTTGCTCAACCGGCTGGTGAGTCGGGCCGTCTTCGCCCAGACCGATGGAGTCGTGGGTGTAAACCATCACCTGACGCTGTTtcatc                               <  2:7562937/93‑1 (MQ=255)

                                                          gaAGCGACTTGCTCAACCGGCTGGTGAGTCGGGCCGTCTTCGCCCAGACCGATGGAGTCGTGGGGGTAAACCATAACCTGACGCTGTTtcatc                               >  2:2876353/1‑93 (MQ=255)

                                                          aaaGCTACTTGGTGAACCGACTGGTGAGTCGGGCCTACTTCGACCAGACCGATGGAGTCGTGGGTGTAAACCATCACCTGACGCTGTTtcatc                               <  1:1931044/92‑1 (MQ=255)

                                                           aaGCGACTTGCTCAACCGGCTGGTGAGTCGGGCCGTCTTCGCCCAGACCGATGGAGTCGTGGGTGTAAACCATCACCTGACGCTGTTtcatca                              >  1:4244375/1‑93 (MQ=255)

                                                            aGCGACTTGCTCAACCGGCTGGTGAGTCGGGCCGTCTTCGCCCAGACCGATGGAGTCGTGGGTGTAAACCATCACCTGACGCTGTTTCATCAg                             <  1:5564921/93‑1 (MQ=255)

                                                                acttGCTCAACCGGCTGGTGAGTCGGGCCGTCTTCGCCCAGACCGATGGAGTCGTGGGTGTAAACCATCACCTGGCGCTGTTTCATCAGCGCa                         >  2:7405120/4‑93 (MQ=255)

                                                                acttGCTCAACCGGCTGGTGAGTCGGGCCGTCTTCGCCCAGACCGATGGAGTCGTGGGTGTAAACCATCACCTGACGCTGTTTCATCAGCGCa                         <  1:253703/90‑1 (MQ=255)

                                                                  ttGCTCAACCGGCTGGTGAGTCGGGCCGTCTTCGCCCAGACCGATGGAGTCGTGGGTGTAAACCATCACCTGACGCTGTTTCATCAGCGCAGc                       >  2:1027241/2‑93 (MQ=255)

                                                                  ttGCTCAACCGGCTGGTGAGTCGGGCCGTCTTCGCCCAGACCGATGGAGTCGTGGGCGTGAACCAAAACCTGACGCTGTTTCTTCAGCGCAGc                       >  2:3457343/2‑93 (MQ=255)

                                                                     cTCAACCGGCTGGTGAGTCGGGCCGTCTTCGCCCAGACCGATGGAGTCGTGGGTGTAAACCATCACCTGACGCTGTTTCATCAGCGCAGCCAt                    >  1:2089630/1‑93 (MQ=255)

                                                                      tCAACCGGCTGGTGAGTCGGGCCGTCTTCGCCCAGACCGATGGAGTCGTGGGTGTAAACCATCACCTGACGCTGTTTCATCAGCGCAGCCAta                   >  1:3168263/1‑93 (MQ=255)

                                                                      tCAACCGGCTGGTGAGTCGGGCCGTCTTCGCCCAGACCGATGGAGTCGTGGGTGTAAACCATCACCTGACGCTGTTTCATCAGCGCAGCCAta                   <  1:4766529/93‑1 (MQ=255)

                                                                      tCAACCGGCTGGTGAGTCGGGCCGTCTTCGCCCAGACCGATGGAGTCGTGGGTGTAAACCATCACCTGACGCTGTTTCATCAGCGCAGCCAta                   <  1:1237138/93‑1 (MQ=255)

                                                                       cAACCGGCTGGTGAGTCGGGCCGTCTTCGCCCAGACCGATGGAGTCGTGGGTGTAAACCATCACCTGACGCTGTTTCATCAGCGCAGCCAtac                  <  2:1475444/93‑1 (MQ=255)

                                                                       cAACCGGCTGGTGAGTCGGGCCGTCTTCGCCCAGACCGATGGAGTCGTGGGTGTAAACCATCACCTGACGCTGTTTCATCAGCGCAGCCAtac                  <  1:1821490/93‑1 (MQ=255)

                                                                        aaCCGGCTGGTGAGTCGGGCCGTCTTCGCCCAGACCGATGGAGTCGTGGGTGTAAACCATCACCTGACGCTGTTTCATCAGCGCAGCCAtacg                 >  2:7331539/1‑93 (MQ=255)

                                                                        aaCCGGCTGGTGAGTCGGGCCGTCTTCGCCCAGACCGATGGAGTCGTGGGTGTAAACCATCACCTGACGCTGTTTCATCAGCGCAGCCAtacg                 >  1:4595316/1‑93 (MQ=255)

                                                                         aCCGGCTGGTGAGTCGGGCCGTCTTCGCCCAGACCGATGGAGTCGTGGGTGTAAACCATCACCTGACGCTGTTTCATCAGCGCAGCCAtacgt                <  2:7127299/93‑1 (MQ=255)

                                                                         aCCGGCTGGTGAGTCGGGCCGTCTTCGCCCAGACCGATGGAGTCGTGGGTGTAAACCATCACCTGACGCTGTTTCATCAGCGCAGCCAtacgt                <  2:645244/93‑1 (MQ=255)

                                                                         aCCGGCTGGTGAGTCGGGCCGTCTTCGCCCAGACCGATGGAGTCGTGGGTGTAAACCATCACCTGACGCTGTTTCATCAGCGCAGCCAtacgt                >  2:3127763/1‑93 (MQ=255)

                                                                         aCCGGCTGGTGAGTCGGGCCGTCTTCGCCCAGACCGATGGAGTCGTGGGTGTAAACCATCACCTGACGCTGTTTCATCAGCGCAGCCAtacgt                <  2:6005209/93‑1 (MQ=255)

                                                                          ccGGCTGGTGAGTCGGGCCGTCTTCGCCCAGACCGATGGAGTCGTGGGTGTAAACCATCACCTGACGCTGTTTCATCAGCGCAGCCAtacgta               <  2:1591871/93‑1 (MQ=255)

                                                                           cGGCTGGTGAGTCGGGCCGTCTTCGCCCAGACCGATGGAGTCGTGGGTGTAAACCATCACCTGACGCTGTTTCATCAGCGCAGCCAtacgtac              <  1:6630900/93‑1 (MQ=255)

                                                                            ggCTGGTGAGTCGGGCCGTCTTCGCCCAGACCGATGGAGTCGTGGGTGTAAACCATCACCTGACGCTGTTTCATCAGCGCAGCCAtacgtacg             >  2:238235/1‑93 (MQ=255)

                                                                             gCTGGTGAGTCGGGCCGTCTTCGCCCAGACCGATGGAGTCGTGGGGGTAAACCATCACCTGACGCTGTTTCATCAGCGCAGCCATACGTACgg            >  1:4663339/1‑93 (MQ=255)

                                                                               tGGTGAGTCGGGCCGTCTTCGCCCAGACCGATGGAGTCGTGGGTGTAAACCATCACCTGACGCTGTTTCATCAGCGCAGCCATACGTACGGCg          >  2:5058555/1‑93 (MQ=255)

                                                                               tGGTGAGTCGGGCCGTCTTCGCCCAGACCGATGGAGTCGTGGGTGTAAACCATCACCTGACGCTGTTTCATCAGCGCAGCCATACGTACGGCg          >  2:4660719/1‑93 (MQ=255)

                                                                                ggTGAGTCGGGCCGTCTTCGCCCAGACCGATGGAGTCGTGGGTGTAAACCATCACCTGACGCTGTTTCATCAGCGCAGCCATACGTACGGCGt         >  2:2108878/1‑93 (MQ=255)

                                                                                     gTCGGGCCGTCTTCGCCCAGACCGATGGAGTCGTGGGTGTAAACCATCACCTGACGCTGTTTCATCAGCGCAGCCATACGTACGGCGTTACGt    <  2:7002647/93‑1 (MQ=255)

                                                                                     gTCGGGCCGTCTTCGCCCAGACCGATGGAGTCGTGGGTGTAAACCATCACCTGACGCTGTTTCATCAGCGCAGCCATACGTACGGCGTTACGt    <  2:7493262/93‑1 (MQ=255)

                                                                                     gTCGGGCCGTCTTCGCCCAGACCGATGGAGTCGTGGGTGTAAACCATCACCTGACGCTGTTTCATCAGCGCAGCCATACGTACGGCGTTACGt    <  1:5162685/93‑1 (MQ=255)

                                                                                       cGGGCCGTCTTCGCCCAGACCGATGGAGTCGTGGGTGTAAACCATCACCTGACGCTGTTTCATCAGCGCAGCCATACGTACGGCGTTACGTGc  >  1:1371189/1‑93 (MQ=255)

                                                                                       cGGCCCGTCTTCCCCCAGACCGATGGAGTCGTGGGTGTAAACCATCACCTGACGCTGTTTCATCAGCGCAGCCATACGTACGGCGTTACGTGc  <  2:5868490/93‑1 (MQ=255)

CGCGGATTCAACCTGGTCACACGGACGCCATGTAGACATGTTCGGGGTTACGCGCAGAGAAGCGACCTGCTCAACCGGCTGGTGAGTCGGCCCGTCTTCGCCCAGACCGATGGAGTCGTGGGTGTAAACCATCACCTGACGCTGTTTCATCAGCGCAGCCATACGTACGGCGTTACGTGC  >  NC_000913/3078155‑3078334

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 20 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

GACCGCGGATTCAACCTGGTCACACGGACGCCATGTAGACATGTTCGGGGTTACGCGCAGAGAAGCGACCTGCTCAACCGGCTGGTGAGTCGGCCCGTCTTCGCCCAGACCGATGGAGTCGTGGGTGTAAACCATCACCTGACGCTGTTTCATCAGCGCAGCCATACGTACGGCGTTACGTGCGT  >  NC_000913/3078152‑3078336

GACCGCGGATTCAACCTGGTCACACGGACGCCATGTAGACATGTTCGGGGTTACGCGCAGAGAAGCGACTTGCTCAACCGGCTGGTGAGTCGGG                                                                                             >  SRR4302543.3387732/1‑94 (MQ=60)

GACCGCGGATTCAACCTGGTCACACGGACGCCATGTAGACATGTTCGGGGTTACGCGCAGAGAAGCGACTTGCTCAACCGGCTGGTGAGTCGGG                                                                                             <  SRR4302543.5565131/94‑1 (MQ=60)

  CCGCGGATTCAACCTGGTCACACGGACGCCATGTAGACATGTTCGGGGTTACGCGCAGAGAAGCGACTTGCTCAACCGGCTGGTGAGTCGGGCC                                                                                           <  SRR4302543.7378373/94‑1 (MQ=60)

     CGGATTCAACCTGGTCACACGGACGCCATGTAGACATGTTCGGGGTTACGCGCAGAGAAGCGACTTGCTCAACCGGCTGGTGAGTCGGGCCGTC                                                                                        >  SRR4302543.1118612/1‑94 (MQ=60)

     CGGATTCAACCTGGTCACACGGACGCCATGTAGACATGTTCGGGGTTACGCGCAGAGAAGCGACTTGCTCAACCGGCTGGTGAGTCGGGCCGTC                                                                                        >  SRR4302543.5780788/1‑94 (MQ=60)

      GGATTCAACCTGGTCACACGGACGCCATGTAGGCATGTTCGGGGTTACGCGCAGAGAAGCGACTTGCTCAACCGGCTGGTGAGTCGGGCCGTCT                                                                                       <  SRR4302543.2955443/94‑1 (MQ=60)

      GGATTCAACCTGGTCACACGGACGCCATGTAGACATGTTCGGGGTTACGCGCAGAGAAGCGACTTGCTCAACCGGCTGGTGAGTCGGGCCGTCT                                                                                       <  SRR4302543.1451613/94‑1 (MQ=60)

      GGATTCAACCTGGTCACACGGACGCCATGTAGACATGTTCGGGGTTACGCGCAGAGAAGCGACTTGCTCAACCGGCTGGTGAGTCGGGCCGTCT                                                                                       <  SRR4302543.7009953/94‑1 (MQ=60)

      GGATTCAACCTGGTCACACGGACGCCATGTAGACATGTTCGGGGTTACGCGCAGAGAAGCGACTTGCTCAACCGGCTGGTGAGTCGGGCCGTCT                                                                                       >  SRR4302543.7012708/1‑94 (MQ=60)

       GATTCAACCTGGTCACACGGACGCCATGTAGACATGTTCGGGGTTACGCGCAGAGAAGCGACTTGCTCAACCGGCTGGTGAGTCGGGCCGTCTT                                                                                      >  SRR4302543.2513534/1‑94 (MQ=60)

        ATTCAACCTGGTCACACGGACGCCATGTAGACATGTTCGGGGTTACGCGCAGAGAAGCGACTTGCTCAACCGGCTGGTGAGTCGGGCCGTCTTC                                                                                     >  SRR4302543.3667715/1‑94 (MQ=60)

        ATTCAACCTGGTCACACGGACGCCATGTAGACATGTTCGGGGTTACGCGCAGAGAAGCGACTTGCTCAACCGGCTGGTGAGTCGGGCCGTCTTC                                                                                     >  SRR4302543.5046126/1‑94 (MQ=60)

        ATTCAACCTGGTCACACGGACGCCATGTAGACATGTTCGGGGTTACGCGCAGAGAAGCGACTTGCTCAACCGGCTGGTGAGTCGGGCCGTCTTC                                                                                     >  SRR4302543.2982610/1‑94 (MQ=60)

        ATTCAACCTGGTCACACGGACGCCATGTAGACATGTTCGGGGTTACGCGCAGAGAAGCGACTTGCTCAACCGGCTGGTGAGTCGGGCCGTCTTC                                                                                     >  SRR4302543.3827289/1‑94 (MQ=60)

             ACCTGGTCACACGGACGCCATGTAGACATGTTCGGGGTTACGCGCAGAGAAGCGACTTGCTCAACCGGCTGGTGAGTCGGGCCGTCTTCGCCCA                                                                                <  SRR4302543.238823/94‑1 (MQ=60)

             ACCTGGTCACACGGACGCCATGTAGACATGTTCGGGGTTACGCGCAGAGAAGCGACTTGCTCAACCGGCTGGTGAGTCGGGCCGTCTTCGCCCA                                                                                <  SRR4302543.3629559/94‑1 (MQ=60)

             ACCTGGTCACACGGACGCCATGTAGACATGTTCGGGGTTACGCGCAGAGAAGCGACTTGCTCAACCGGCTGGTGAGTCGGGCCGTCTTCGCCCA                                                                                <  SRR4302543.221402/94‑1 (MQ=60)

              CCTGGTCGCCCGGCCGCCATGTGGCCGTGTTCGGGGTTACGCGCAGGGAAGCGACTTGCTCGCCCGGCTGGTGAGTCGGGCCGTCTTCGCCCAG                                                                               <  SRR4302543.6084636/94‑1 (MQ=38)

              CCTGGTCACACGGACGCCATGTAGACATGTTCGGGGTTACGCGCAGAGAAGCGACTTGCTCAACCGGCTGGTGAGTCGGGCCGTCTTCGCCCAG                                                                               <  SRR4302543.7125793/94‑1 (MQ=60)

               CTGGTCACACGGACGCCATGTAGACATGTTCGGGGTTACGCGCAGAGAAGCGACTTGCTCAACCGGCTGGTGAGTCGGGCCGTCTTCGCCCAGC                                                                              >  SRR4302543.5524449/1‑94 (MQ=60)

               CTGGTCACACGGACGCCATGTAGACATGTTCGGGGTTACGCGCAGAGAAGCGACTTGCTCAACCGGCTGGTGAGTCGGGCCGTCTTCGCCCAGA                                                                              >  SRR4302543.5496382/1‑94 (MQ=60)

                 GGTCACACGGACGCCATGTAGACATGTTCGGGGTTACGCGCAGAGAAGCGACTTGCTCAACCGGCTGGTGAGTCGGGCCGTCTTCGCCCAGACC                                                                            <  SRR4302543.1421693/94‑1 (MQ=60)

                 GGTCACACGGACGCCATGTAGACATGTTCGGGGTTACGCGCAGAGAAGCGACTTGCTCAACCGGCTGGTGAGGCGGGCCGTCCTCGCCCAGACC                                                                            >  SRR4302543.7454802/1‑94 (MQ=60)

                  GTCACACGGACGCCATGTAGACATGTTCGGGGTTACGCGCAGAGAAGCGACTTGCTCAACCGGCTGGTGAGTCGGGCCGTCTTCGCCCAGACCG                                                                           <  SRR4302543.3485695/94‑1 (MQ=60)

                  GTCACACGGACGCCATGTAGACATGTTCGGGGTTACGCGCAGAGAAGCGACTTGCTCAACCGGCTGGTGAGTCGGGCCGTCTTCGCCCAGACCG                                                                           <  SRR4302543.7383979/94‑1 (MQ=60)

                   TCACACGGACGCCATGTAGACATGTTCGGGGTTACGCGCAGAGAAGCGACTTGCTCAACCGGCTGGTGAGTCGGGCCGTCTTCGCCCAGACCGA                                                                          >  SRR4302543.5105855/1‑94 (MQ=60)

                    CACACGGACGCCATGTAGACATGTTCGGGGTTACGCGCAGAGAAGCGACTTGCTCAACCGGCTGGTGAGTCGGGGCGTCTTCGCCCAGACAGAT                                                                         >  SRR4302543.2914661/1‑94 (MQ=60)

                    CACACGGACGCCATGTAGACATGTTCGGGGTTACGCGCAGAGAAGCGACTTGCTCAACCGGCTGGTGAGTCGGGCCGTCTTCGCCCAGACCGAT                                                                         >  SRR4302543.3371417/1‑94 (MQ=60)

                    CACACGGACGCCATGTAGACATGTTCGGGGTTACGCGCAGAGAAGCGACTTGCTCAACCGGCTGGTGAGTCGGGCCGTCTTCGCCCAGACCGAT                                                                         <  SRR4302543.4740721/94‑1 (MQ=60)

                    CACACGGACGCCATGTAGACATGTTCGGGGTTACGCGCAGAGAAGCGACTTGCTCAACCGGCTGGTGAGTCGGGCCGTCTTCGCCCAGACCGAT                                                                         <  SRR4302543.6769799/94‑1 (MQ=60)

                    CACACGGACGCCATGTAGACATGTTCGGGGTTACGCGCAGAGAAGCGACTTGCTCAACCGGCTGGTGAGTCGGGCCGTCTTCGCCCAGACCGAG                                                                         >  SRR4302543.3646971/1‑94 (MQ=60)

                     CCACGGACGCCATGTAGACATGTTCGGGGTTACGCGCAGAGAAGCGACTTGCTCAACCGGCTGGTGAGTCGGGCCGTCTTCGCCCAGACCGATG                                                                        <  SRR4302543.2230263/94‑1 (MQ=60)

                     ACACGGTCGCCATGTAGACATGTTCGGGGTTACGCGCAGAGAAGCGACCTGCTCAACCGGCTGGTGAGTCGGGCCGTCTTCGCCCAGACCGATG                                                                        <  SRR4302543.4895769/94‑1 (MQ=60)

                     ACACGGACGCCATGTAGACATGTTCGGGGTTACGCGCAGAGAAGCGACTTGCTCAACCGGCTGGTGAGTCGGGCCGTCTTCGCCCAGACCGATG                                                                        <  SRR4302543.5012664/94‑1 (MQ=60)

                     ACACGGACGCCATGTAGACATGTTCGGGGTTACGCGCAGAGAAGCGACTTGCTCAACCGGCTGGTGAGTCGGGCCGTCTTCGCCCAGACCGATG                                                                        >  SRR4302543.6046153/1‑94 (MQ=60)

                     ACACGGACGCCATGTAGACATGTTCGGGGTTACGCGCAGAGAAGCGACTTGCTCAACCGGCTGGTGAGTCGGGCCGTCTTCGCCCAGACCGATG                                                                        >  SRR4302543.1580849/1‑94 (MQ=60)

                     ACACGGACGCCATGTAGACATGTTCGGGGTTACGCGCAGAGAAGCGACTTGCTCAACCGGCTGGTGAGTCGGGCCGTCTTCGCCCAGACCGATG                                                                        <  SRR4302543.488648/94‑1 (MQ=60)

                     ACACGGACGCCATGTAGACATGTTCGGGGTTACGCGCAGAGAAGCGACTTGCTCAACCGGCTGGTGAGTCGGGCCGTCTTCGCCCAGACCGATG                                                                        >  SRR4302543.7337555/1‑94 (MQ=60)

                      CACGGACGCCATGTAGACATGTTCGGGGTTACGCGCAGAGAAGCGACTTGCTCAACCGGCTGGTGAGTCGGGCCGTCTTCGCCCAGACCGATGG                                                                       <  SRR4302543.1188526/94‑1 (MQ=60)

                      CACGGACGCCATGTAGACATGTTCGGGGTTACGCGCAGAGAAGCGACTTGCTCAACCGGCTGGTGAGTCGGGCCGTCTTCGCCCAGACCGATGG                                                                       <  SRR4302543.256043/94‑1 (MQ=60)

                       ACGGACGCCATGTAGACATGTTCGGGGTTACGCGCAGAGAAGCGACTTGCTCAACCGGCTGGTGAGTCGGGCCGTCTTCGCCCAGACCGATGGA                                                                      <  SRR4302543.2611786/94‑1 (MQ=60)

                        CGGACGCCATGTAGACATGTTCGGGGTTACGCGCAGAGAAGCGACTTGCTCAACCGGCTGGTGAGTCGGGCCGTCTTCGCCCAGACCGATGGAG                                                                     <  SRR4302543.2529781/94‑1 (MQ=60)

                        CGGACGCCATGTAGACATGTTCGGGGTTACGCGCAGAGAAGCGACTTGCTCAACCGGCTGGTGAGTCGGGCCGGCTTCGCCCAGACCGATGGAG                                                                     >  SRR4302543.4532275/1‑94 (MQ=60)

                          GACGCCATGTAGACATGTTCGGGGTTACGCGCAGAGAAGCGACTTGCTCAACCGGCTGGTGAGTCGGGCCGTCTTCGCCCAGACCGATGGAGTC                                                                   <  SRR4302543.3600317/94‑1 (MQ=60)

                          GACGCCATGTAGACATGGTCGGGGTTACGCGCAGAGAAGCGACTTGCTCAACCGGCTGGTGAGTCGGGCCGTCTTCGCCCAGACCGATGGAGTC                                                                   <  SRR4302543.457731/94‑1 (MQ=60)

                           ACGCCATGTAGACATGTTCGGGGTTACGCGCAGAGAAGCGACTTGCTCAACCGGCTGGTGAGTCGGGCCGTCTTCGCCCAGACCGATGGAGTCG                                                                  <  SRR4302543.5653239/94‑1 (MQ=60)

                           ACGCCATGTAGACATGTTCGGGGTTACGCGCAGAGAAGCGACTTGCTCAACCGGCTGGTGAGTCGGGCCGTCTTCGCCCAGACCGATGGAGTCG                                                                  <  SRR4302543.4680065/94‑1 (MQ=60)

                             GCCATGTAGACATGTTCGGGGTTACGCGCAGAGAAGCGACTTGCTCAACCGGCTGGTGAGTCGGGCCGTCTTCGTCCAGACCGATGGAGTCGTG                                                                >  SRR4302543.3664191/1‑94 (MQ=60)

                             GCCATGTAGACATGTTCGGGGTTACGCGCAGAGAAGCGACTTGCTCAACCGGCTGGTGAGTCGGGCCGTCTTCGCCCAGACCGATGGAGTCGTG                                                                <  SRR4302543.2544320/94‑1 (MQ=60)

                              CCATGTAGACATGTTCGGGGTTACGCGCAGAGAAGCGACTTGCTCAACCGGCTGGTGAGTCGGGCCGTCTTCGCCCAGACCGATGGAGTCGTGG                                                               <  SRR4302543.2879046/94‑1 (MQ=60)

                              CCATGTAGACATGTTCGGGGTTACGCGCAGAGAAGCGACTTGCTCAACCGGCTGGTGAGTCGGGCCGTCTTCGCCCAGACCGATGGAGTCGTGG                                                               <  SRR4302543.5874674/94‑1 (MQ=60)

                               CATGTAGACATGTTCGGGGTTACGCGCAGAGAAGCGACTTGCTCAACCGGCTGGTGAGTCGGGCCGTCTTCGCCCAGACCGATGGAGTCGTGGG                                                              <  SRR4302543.2569849/94‑1 (MQ=60)

                                ATGTAGACATGTTCGGGGTTACGCGCAGAGAAGCGACTTGCTCAACCGGCTGGTGAGTCGGGCCGTCTTCGCCCAGACCGATGGAGTCGTGGGT                                                             <  SRR4302543.3816155/94‑1 (MQ=60)

                                ATGTAGACATGTTCGGGGTTACGCGCAGAGAAGCGACTTGCTCAACCGGCTGGTGAGTCGGGCCGTCTTCGCCCAGACCGATGGAGTCGTGGGT                                                             <  SRR4302543.6422212/94‑1 (MQ=60)

                                ATGTAGACATGTTCGGGGTTACGCGCAGAGAAGCGACTTGCTCAACCGGCTGGTGAGTCGGGCCGTCTTCGCCCAGACCGATGGAGTCGTGGGT                                                             >  SRR4302543.4923276/1‑94 (MQ=60)

                                ATGTAGACATGTTCGGGGTTACGCGCAGAGAAGCGACTTGCTCAACCGGCTGGTGAGTCGGGCCGTCTTCGCCCAGACCGATGGAGTCGTGGGG                                                             >  SRR4302543.4924457/1‑94 (MQ=60)

                                 TGTAGACATGTTCGGGGTTACGCGCAGAGAAGCGACTTGCTCAACCGGCTGGTGAGTCGGGCCGTCTTCGCCCAGACCGATGGAGTCGTGGGTG                                                            <  SRR4302543.7480789/94‑1 (MQ=60)

                                 TGTAGACATGTTCGGGGTTACGCGCAGAGAAGCGACTTGCTCAACCGGCTGGTGAGTCGGGCCGTCTTCGCCCAGACCGATGGAGTCGTGGGTG                                                            >  SRR4302543.3289898/1‑94 (MQ=60)

                                  GTAGACATGTTCGGGGTTACGCGCAGAGAAGCGACTTGCTCAACCGGCTGGTGAGTCGGGCCGTCTTCGCCCAGACCGATGGAGTCGTGGGTGT                                                           >  SRR4302543.5277180/1‑94 (MQ=60)

                                  GTAGACATGTTCGGGGTTACGCGCAGAGAAGCGACTTGCTCAACCGGCTGGTGAGTCGGGCCGTCTTCGCCCAGACCGATGGAGTCGTGGGTGT                                                           >  SRR4302543.5277186/1‑94 (MQ=60)

                                   TAGACATGTTCGGGGTTACGCGCAGAGAAGCGACTTGCTCAACCGGCTGGTGAGTCGGGCCGTCTTCGCCCAGACCGATGGAGTCGTGGGTGTA                                                          <  SRR4302543.6069697/94‑1 (MQ=60)

                                    AGACATGTTCGGGGTTACGCGCAGAGAAGCGACTTGCTCAACCGGCTGGTGAGTCGGGCCGTCTTCGCCCAGACCGATGGAGTCGTGGGTGTAA                                                         >  SRR4302543.6868888/1‑94 (MQ=60)

                                    AGACATGTTCGGGGTTACGCGCAGAGAAGCGACTTGCTCAACCGGCTGGTGAGTCGGGCCGTCTTCGCCCAGACCGATGGAGTCGTGGGTGTAA                                                         >  SRR4302543.1027954/1‑94 (MQ=60)

                                    AGACATGTTCGGGGTTACGCGCAGAGAAGCGACTTGCTCAACCGGCTGGTGAGTCGGGCCGTCTTCGCCCAGACCGATGGAGCAGTGGGTGTAA                                                         >  SRR4302543.1027953/1‑94 (MQ=60)

                                     GACATGTTCGGGGTTACGCGCAGAGAAGCGACTTGCTCAACCGGCTGGTGAGTCGGGCCGTCTTCGCCCAGACCGATGGAGTCGTGGGGGTAAA                                                        >  SRR4302543.6589640/1‑94 (MQ=60)

                                      ACATGTTCGGGGTTACGCGCAGAGAAGCGACTTGCTCAACCGGCTGGTGAGTCGGGCCGTCTTCGCCCAGACCGATGGAGTCGTGGGTGTAAAC                                                       <  SRR4302543.90609/94‑1 (MQ=60)

                                       CATGTTCGGGGTTACGCGCAGAGAAGCGACTTGCTCAACCGGCTGGTGAGTCGGGCCGTCTTCGCCCAGACCGATGGAGTCGTGGGTGTAAACC                                                      <  SRR4302543.7842319/94‑1 (MQ=60)

                                       CATGTTCGGGGTTACGCGCAGAGAAGCGACTTGCTCAACCGGCTGGTGAGTCGGGCCGTCTTCGCCCAGACCGATGGAGTCGTGGGTGTAAACC                                                      >  SRR4302543.4254961/1‑94 (MQ=60)

                                        ATGTTCGGGGTTACGCGCAGAGAAGCGACTTGCTCAACCGGCTGGTGAGTCGGGCCGTCTTCGCCCAGACCGATGGAGTCGTGGGTGTAAACCA                                                     >  SRR4302543.1086895/1‑94 (MQ=60)

                                        ATGTTCGGGGTTACGCGCAGAGAAGCGACTTGCTCAACCGGCTGGTGAGTCGGGCCGTCTTCGCCCAGACCGATGGAGTCGTGGGTGTAAACCA                                                     >  SRR4302543.1559981/1‑94 (MQ=60)

                                        ATGTTCGGGGTTACGCGCAGAGAAGCGACTTGCTCAACCGGCTGGTGAGTCGGGCCGTCTTCGCCCAGACCGATGGAGTCGTGGGTGTAAACCA                                                     >  SRR4302543.2416402/1‑94 (MQ=60)

                                        ATGTTCGGGGTTACGCGCAGAGAAGCGACTTGCTCAACCGGCTGGTGAGTCGGGCCGTCTTCGCCCAGACCGATGGAGTCGTGGGTGTAAACCA                                                     >  SRR4302543.2715087/1‑94 (MQ=60)

                                          GTTCGGGGTTACGCGCAGAGAAGCGACTTGCTCAACCGGCTGGTGAGTCTGGCCGTCTTCGCCCAGACCGATGGAGTCGTGGGTGTAAACCATC                                                   <  SRR4302543.3613048/94‑1 (MQ=60)

                                            TCGGGGTTACGCGCAGAGAAGCGACTTGCTCAACCGGCTGGTGAGTCGGGCCGTCTTCGCCCAGACCGATGGAGTCGTGGGTGTAAACCATCAC                                                 <  SRR4302543.2650109/94‑1 (MQ=60)

                                             CGGGGTTACGCGCAGAGAAGCGACTTGCTCAACCGGCTGGTGAGTCGTGCCGTCTTCGCCCAGACCGATGGAGTCGTGGGTGTAAACCATCACC                                                <  SRR4302543.4466103/94‑1 (MQ=60)

                                             CGGGGTTACGCGCAGAGAAGCGACTTGCTCAACCGGCTGGTGAGTCGGGCCGTCTTCGCCCAGACCGATGGAGTCGTGGGTGTAAACCATCACC                                                <  SRR4302543.2292796/94‑1 (MQ=60)

                                             CGGGGTTACGCGCAGAGAAGCGACTTGCTCAACCGGCTGGTGAGTCGGGCCGTCTTCGCCCAGACCGATGGAGTCGTGGGTGTAAACCATCACC                                                <  SRR4302543.6808876/94‑1 (MQ=60)

                                             CGGGGTTACGCGCAGAGAAGCGACTTGCTCAACCGGCTGGTGAGTCGGGCCGTCTTCGCCCAGACCGATGGAGTCGTGGGTGTAAACCATCACC                                                <  SRR4302543.4466104/94‑1 (MQ=60)

                                             CGGGGTTACGCGCAGAGAAGCGACTTGCTCAACCGGCTGGTGAGTCGGGCCGTCTTCGCCCAGACCGATGGAGTCGTGGGTGTAAACCATCACC                                                >  SRR4302543.3421423/1‑94 (MQ=60)

                                              GGGGTTACGCGCAGAGAAGCGACTTGCTCAACCGGCTGGTGAGTCGGGCCGTCTTCGCCCAGACCGATGGAGTCGTGGGTGTAAACCATCACCT                                               <  SRR4302543.3248795/94‑1 (MQ=60)

                                              GGGGTTACGCGCAGAGAAGCGACTTGCTCAACCGGCTGGTGAGTCGGGCCGTCTTCGCCCAGACCGATGGAGTCGTGGGTGTAAACCATCACCT                                               <  SRR4302543.3043987/94‑1 (MQ=60)

                                              GGGGTTACGCGCAGAGAAGCGACTTGCTCAACCGGCTGGTGAGTCGGGCCGTCTTCGCCCAGACCGATGGAGTCGTGGGTGTAAACCATCACCT                                               >  SRR4302543.6807462/1‑94 (MQ=60)

                                               GGGTTACGCGCAGAGAAGCGACTTGCTCAACCGGCTGGTGAGTCGGGCCGTCTTCGCCCAGACCGATGGAGTCGTGGGTGTAAACCATCACCTG                                              <  SRR4302543.1926803/94‑1 (MQ=60)

                                                GGTTACGCGCAGAGAAGCGACTTGCTCAACCGGCTGGTGAGTCGGGCCGTCTTCGCCCAGACCGATGGAGTCGTGGGTGTAAACCATCACatgc                                             >  SRR4302543.2019323/1‑90 (MQ=60)

                                                GGTTACGCGCAGAGAAGCGACTTGCTCAACCGGCTGGTGAGTCGGGCCGTCTTCGCCCAGACCGATGGAGTCGTGGGTGTAAACCATCACCTGA                                             <  SRR4302543.1274309/94‑1 (MQ=60)

                                                 GTTACGCGCAGAGAAGCGACTTGCTCAACCGGCTGGTGAGTCGGGCCGTCTTCGCCCAGACCGATGGAGTCGTGGGTGTAAACCATCACCTGAC                                            <  SRR4302543.1842034/94‑1 (MQ=60)

                                                 GTTACGCGCAGAGAAGCGACTTGCTCAACCGGCTGGTGAGTCGGGCCGTCTTCGCCCAGACCGATGGAGTCGTGGGTGTAAACCATCACCTGAC                                            <  SRR4302543.6327536/94‑1 (MQ=60)

                                                 GTTACGCGCAGAGAAGCGACTTGCTCAACCGGCTGGTGAGTCGGGCCGTCTTCGCCCAGACCGATGGAGTCGTGGGTGTAAACCATCACCTGAC                                            <  SRR4302543.7844835/94‑1 (MQ=60)

                                                  GTACGCGCAGAGAAGCGACTTGCTCAACCGGCTGGTGAGTCGGGCCGTCTTCGCCCAGACCGATGGAGTCGTGGGTGTAAACCATCACCTGACG                                           <  SRR4302543.3318306/94‑1 (MQ=60)

                                                     CGCGCAGAGAAGCGACTTGCTCAACCGGCTGGTGAGTCGGGCCGTCTTCGCCCAGACCGATGGAGTCGTGGGTGTAAACCATCACCTGACGCTG                                        >  SRR4302543.7054636/1‑94 (MQ=60)

                                                       CGCAGAGAAGCGACTTGCTCAACCGGCTGGTGAGTCGGGCCGTCTTCGCCCAGACCGATGGAGTCGTGGGTGTAAACCATCACCTGACGCTGTT                                      >  SRR4302543.5557031/1‑94 (MQ=60)

                                                        GCAGAGAAGCGACTTGCTCAACCGGCTGGTGAGTCGGGCCGTCTTCGCCCAGACCGATGGAGTCGTGGGTGTAAACCATCACCTGACGCTGTTT                                     <  SRR4302543.2074471/94‑1 (MQ=60)

                                                         CAGAGAAGCGACTTGCTCAACCGGCTGGTGAGTCGGGCCGTCTTCGCCCAGACCGATGGAGTCGTGGGTGTAAACCATCACCTGACGCTGTTTC                                    >  SRR4302543.1568051/1‑94 (MQ=60)

                                                         CAGAGAAGCGACTTGCTCAACCGGCTGGTGAGTCGGGCCGTCTTCGCCCAGACCGATGGAGTCGTGGGTGTAAACCATCACCTGACGCTGTTTC                                    <  SRR4302543.4900390/94‑1 (MQ=60)

                                                         CAGAGAAGCGACTTGCTCAACCGGCTGGGGAGTCGGGCCGTCTTCGCCCAGACCGATGGAGACGTGGGTGTAAACCATCACCTGACGCTGTTTC                                    >  SRR4302543.658439/1‑94 (MQ=60)

                                                          AGAGAAGCGACTTGCTCAACCGGCTGGTGAGTCGGGCCGTCTTCGCCCAGACCGATGGAGTCGTGGGTGTAAACCATCACCTGACGCTGTTTCA                                   >  SRR4302543.4807776/1‑94 (MQ=60)

                                                          AGAGAAGCGACTTGCTCAACCGGCTGGTGAGTCGGGCCGTCTTCGCCCAGACCGATGGAGTCGTGGGTGTAAACCATCACCTGACGCTGTTTCA                                   >  SRR4302543.4402140/1‑94 (MQ=60)

                                                          AGAGAAGCGACTTGCTCAACCGGCTGGTGAGTCGGGCCGTCTTCGCCCAGACCGATGGAGTCGTGGGTGTAAACCATCACCTGACGCTGTTTCA                                   >  SRR4302543.4377082/1‑94 (MQ=60)

                                                           GAGAAGCGACTTGCTCAACCGGCTGGTGAGTCGGGCCGTCTTCGCCCAGACCGATGGAGTCGTGGGTGTAAACCATCACCTGACGCTGTTTCAT                                  <  SRR4302543.5176485/94‑1 (MQ=60)

                                                           GAGAAGCGACTTGCTCAACCGGCTGGTGAGTCGGGCCGTCTTCGCCCAGACCGATGGAGTCGTGGGTGTAAACCATCACCTGACGCTGTTTCAT                                  >  SRR4302543.2588656/1‑94 (MQ=60)

                                                           GAGAAGCGACTTGCTCAACCGGCTGGGGAGTCGGGCCGTCTTCGCCCAGACCGATGGAGTCGTGGGTGTAAACCATCACCTGACGCTGTTTCAT                                  >  SRR4302543.1318417/1‑94 (MQ=60)

                                                             aaagctacttggtgAACCGACTGGTGAGTCGGGCCTACTTCGACCAGACCGATGGAGTCGTGGGTGTAAACCATCACCTGACGCTGTTTCATCA                                <  SRR4302543.1948419/80‑1 (MQ=60)

                                                             GAAGCGACTTGCTCAACCGGCTGGTGAGTCGGGCCGTCTTCGCCCAGACCGATGGAGTCGTGGGTGTAAACCATCACCTGACGCTGTTTCATCA                                <  SRR4302543.1061799/94‑1 (MQ=60)

                                                             GAAGCGACTTGCTCAACCGGCTGGTGAGTCGGGCCGTCTTCGCCCAGACCGATGGAGTCGTGGGTGTAAACCATCACCTGACGCTGTTTCATCA                                <  SRR4302543.2502029/94‑1 (MQ=60)

                                                             GAAGCGACTTGCTCAACCGGCTGGTGAGTCGGGCCGTCTTCGCCCAGACCGATGGAGTCGTGGGTGTAAACCATCACCTGACGCTGTTTCATCA                                <  SRR4302543.1189684/94‑1 (MQ=60)

                                                             GAAGCGACTTGCTCAACCGGCTGGTGAGTCGGGCCGTCTTCGCCCAGACCGATGGAGTCGTGGGTGTAAACCATCACCTGACGCTGTTTCATCA                                >  SRR4302543.4282890/1‑94 (MQ=60)

                                                             GAAGCGACTTGCTCAACCGGCTGGTGAGTCGGGCCGTCTTCGCCCAGACCGATGGAGTCGTGGGTGTAAACCATCACCTGACGCTGTTTCATCA                                <  SRR4302543.4449829/94‑1 (MQ=60)

                                                             GAAGCGACTTGCTCAACCGGCTGGTGAGTCGGGCCGGCTTCGCCCAGACCGATGGAGTCGTGGGTGTAAACCATCACCTGACGCTGTTTCATCA                                >  SRR4302543.2599411/1‑94 (MQ=60)

                                                              AAGCGACTTGCTCAACCGGCTGGGGAGTCGGGCCGTCTTCGCCCAGACCGATGGAGTCGTGGGTGTAAACCATCACGTGACGATGTTTAATCAC                               >  SRR4302543.3895531/1‑94 (MQ=60)

                                                               AGCGACTTGCTCAACCGGCTGGTGAGTCGGGCCGTCTTCGCCCAGACCGATGGAGTCGTGGGTGTAAACCATCACCTGACGCTGTTTCATCAGC                              <  SRR4302543.3322866/94‑1 (MQ=60)

                                                               AGCGACTTGCTCAACCGGCTGGTGAGTCGGGCCGTCTTCGCCCAGACCGATGGAGTCGTGGGTGTAAACCATCACCTGACGCTGTTTCATCAGC                              >  SRR4302543.140781/1‑94 (MQ=60)

                                                               AGCGACTTGCTCAACCGGCTGGTGAGTCGGGCCGTCTTCGCCCAGACCGATGGAGTCGTGGGTGTAAACCATCACCTGACGCTGTTTCATCAGC                              <  SRR4302543.5615538/94‑1 (MQ=60)

                                                                  GACTTGCTCAACCGGCTGGTGAGTCGGGCCGTCTTCGCCCAGACCGATGGAGTCGTGGGTGTAAACCATCACCTGACGCTGTTTCATCAGCGCA                           >  SRR4302543.2354373/1‑94 (MQ=60)

                                                                  GACTTGCTCAACCGGCTGGTGAGTCGGGCCGTCTTCGCCCAGACCGATGGAGTCGTGGGTGTAAACCATCACCTGACGCTGTTTCATCAGCGCA                           >  SRR4302543.4336518/1‑94 (MQ=60)

                                                                  GACTTGCTCAACCGGCTGGTGAGTCGGGCCGTCTTCGCCCAGACCGATGGAGTCGTGGGTGTAAACCATCACCTGACGCTGTTTCATCAGCGCA                           <  SRR4302543.3122226/94‑1 (MQ=60)

                                                                   acttgctatacccgctcgtcAGTCGGGCCGTCATCGCCCAGACCGATGGAGTCGTGGGTGTAAACCATCACCTGACGCTGTTTCATCAGCGCAG                          <  SRR4302543.3484862/74‑1 (MQ=60)

                                                                   ACTTGCTCAACCGGCTGGTGAGTCGGGCCGTCTTCGCCCAGACCGATGGAGTCGTGGGTGTAAACCATCACCTGACGCTGTTTCATCAGCGCAG                          <  SRR4302543.255917/94‑1 (MQ=60)

                                                                    CTTGCTCAACCGGCTGGTGAGTCGGGCCGTCTTCGCCCAGACCGATGGAGTCGTGGGTGTAAACCATCACCTGACGCTGTTTCATCAGCGCAGC                         >  SRR4302543.4278751/1‑94 (MQ=60)

                                                                    CTTGCTCAACCGGCTGGTGAGTCGGGCCGTCTTCGCCCAGACCGATGGAGTCGTGGGTGTAAACCATCACCTGACGCTGTTTCATCAGCGCAGC                         >  SRR4302543.7326468/1‑94 (MQ=60)

                                                                       GCTCAACCGGCTGGTGAGTCGGGCCGTCTTCGCCCAGACCGATGGAGTCGTGGGTGTAAACCATCACCTGACGCTGTTTCATCAGCGCAGCCAT                      >  SRR4302543.2108299/1‑94 (MQ=60)

                                                                       GCTCAACCGGCTGGTGAGTCGGGCCGTCTTCGCCCAGACCGATGGAGTCGTGGGTGTAAACCATCACCTGACGCTGTTTCATCAGCGCAGCCAT                      <  SRR4302543.6314316/94‑1 (MQ=60)

                                                                        CTCAACCGGCTGGTGAGTCGGGCCGTCTTCGCCCAGACCGATGGAGTCGTGGGTGTAAACCATCACCTGACGCTGTTTCATCAGCGCAGCCATA                     >  SRR4302543.3196790/1‑94 (MQ=60)

                                                                         TCAACCGGCTGGTGAGTCGGGCCGTCTTCGCCCAGACCGATGGAGTCGTGGGTGTAAACCATCACCTGACGCTGTTTCATCAGCGCAGCCATAC                    <  SRR4302543.1248272/94‑1 (MQ=60)

                                                                         TCAACCGGCTGGTGAGTCGGGCCGTCTTCGCCCAGACCGATGGAGTCGTGGGTGTAAACCATCACCTGACGCTGTTTCATCAGCGCAGCCATAC                    <  SRR4302543.268427/94‑1 (MQ=60)

                                                                         TCAACCGGCTGGTGAGTCGGGCCGTCTTCGCCCAGACCGATGGAGTCGTGGGTGTAAACCATCACCTGACGCTGTTTCATCAGCGCAGCCATAC                    <  SRR4302543.4810091/94‑1 (MQ=60)

                                                                         TCAACCGGCTGGTGAGTCGGGCCGTCTTCGCCCAGACCGATGGAGTCGTGGGTGTAAACCATCACCTGACGCTGTTTCATCAGCGCAGCCATAC                    >  SRR4302543.7126861/1‑94 (MQ=60)

                                                                         TCAACCGGCTGGTGAGTCGGGCCGTCTTCGCCCAGACCGATGGAGTCGTGGGTGTAAACCATCACCTGACGCTGTTTCATCAGCGCAGCCATAC                    <  SRR4302543.3053573/94‑1 (MQ=60)

                                                                          CAACCGGCTGGTGAGTCGGGCCGTCTTCGCCCAGCCCGATGGAGTCGTGGGTGTAAACCATCACCTGACGCTGTTTCctgcgcgcagacatcgg                   >  SRR4302543.4637051/1‑77 (MQ=60)

                                                                          CAACCGGCTGGTGAGTCGGGCCGTCTTCGCCCAGACCGATGGAGTCGTGGGTGTAAACCATCACCTGACGCTGTTTCATCAGCGCAGCCATACG                   <  SRR4302543.2366571/94‑1 (MQ=60)

                                                                          CAACCGGCTGGTGAGTCGGGCCGTCTTCGCCCAGACCGATGGAGTCGTGGGTGTAAACCATCACCTGACGCTGTTTCATCAGCGCAGCCATACG                   >  SRR4302543.4637050/1‑94 (MQ=60)

                                                                          CAACCGGCTGGTGAGTCGGGCCGTCTTCGCCCAGACCGATGGAGTCGTGGGTGTAAACCATCACCTGACGCTGTTTCATCAGCGCAGCCATACG                   <  SRR4302543.1837832/94‑1 (MQ=60)

                                                                            ACCGGCTGGTGAGTCGGGCCGTCTTCGCCCAGACCGATGGAGTCGTGGGTGTAAACCATCACCTGACGCTGTTTCATCAGCGCAGCCATACGTA                 >  SRR4302543.7508192/1‑94 (MQ=60)

                                                                              CGGCTGGTGAGTCGGGCCGTCTTCGCCCAGACCGATGGAGTCGTGGGTGTAAACCATCACCTGACGCTGTTTCATCAGCGCAGCCATACGTACG               <  SRR4302543.6693461/94‑1 (MQ=60)

                                                                              CGGCTGGTGAGTCGGGCCGTCTTCGCCCAGACCGATGGAGTCGTGGGTGTAAACCATCACCTGACGCTGTTTCATCAGCGCAGCCATACGTACG               <  SRR4302543.5658726/94‑1 (MQ=60)

                                                                              CGGCTGGTGAGTCGGGCCGTCTTCGCCCAGACCGATGGAGTCGTGGGTGTAAACCATCACCTGACGCTGTTTCATCAGCGCAGCCATACGTACG               <  SRR4302543.1215951/94‑1 (MQ=60)

                                                                              CGGCTGGTGAGTCGGGCCGTCTTCGCCCAGACCGATGGAGTCGTGGGTGTAAACCATCACCTGACGCTGTTTCATCAGCGCAGCCATACGTACG               >  SRR4302543.2391551/1‑94 (MQ=60)

                                                                               GGCTGGTGAGTCGGGCCGTCTTCGCCCAGACCGATGGAGTCGTGGGGGTAAACCATCACCTGACGCTGTTTCATCAGCGCAGCCATACGTACGG              >  SRR4302543.4705836/1‑94 (MQ=60)

                                                                                GCTGGTGAGTCGGGCCGTCTTCGCCCAGACCGATGGAGTCGTGGGTGTAAACCATCACCTGACGCTGTTTCATCAGCGCAGCCATACGTACGGC             <  SRR4302543.4083908/94‑1 (MQ=60)

                                                                                 CTGGTGAGTCGGGCCGTCTTCGCCCAGACCGATGGAGTCGTGGGTGTAAACCATCACCTGACGCTGTTTCATCAGCGCAGCCATACGTACGGCG            >  SRR4302543.1032191/1‑94 (MQ=60)

                                                                                 CTGGTGAGTCGGGCCGTCTTCGCCCAGACCGATGGAGTCGTGGGTGTAAACCATCACCTGACGCTGTTTCATCAGCGCAGCCATACGTACGGCG            <  SRR4302543.4462540/94‑1 (MQ=60)

                                                                                 CTGGTGAGTCGGGCCGTCTTCGCCCAGACCGATGGAGTCGTGGGTGTAAACCATCACCTGACGCTGTTTCATCAGCGCAGCCATACGTACGGCG            >  SRR4302543.7493649/1‑94 (MQ=60)

                                                                                  TGGTGAGTCGGGCCGTCTTCGCCCAGACCGATGGAGTCGTGGGTGTAAACCATCACCTGACGCTGTTTCATCAGCGCAGCCATACGTACGGCGT           >  SRR4302543.3326460/1‑94 (MQ=60)

                                                                                   GGTGAGTCGTGCCGTCTTCGCCCAGACCGATGGAGTCGTGGGTGTAAACCATCACCTGACGCTGTTTCATCAGCGCAGCCATACGTACGGCGTT          >  SRR4302543.7347891/1‑94 (MQ=60)

                                                                                       AGTCGGGCCGTCTTCGCCCAGACCGATGGAGTCGTGGGTGTAAACCATCACCTGACGCTGTTTCATCAGCGCAGCCATACGTACGGCGTTACGT      <  SRR4302543.4271946/94‑1 (MQ=60)

                                                                                       AGTCGGGCCGTCTTCGCCCAGACCGATGGAGTCGTGGGTGTAAACCATCACCTGACGCTGTTTCATCAGCGCAGCCATACGTACGGCGTTACGT      >  SRR4302543.802876/1‑94 (MQ=60)

                                                                                        GTCGGGCCGTCTTCGCCCAGACCGATGGAGTCGTGGGTGTAAACCATCACCTGACGCTGTTTCATCAGCGCAGCCATACGTACGGCGTTACGTG     <  SRR4302543.5209337/94‑1 (MQ=60)

                                                                                         TCGGGCCGTCTTCGCCCAGACCGATGGAGTCGTGGGTGTAAACCATCACCTGACGCTGTTTCATCAGCGCAGCCATACGTACGGCGTTACGTGC    >  SRR4302543.1383507/1‑94 (MQ=60)

                                                                                         TCGGGCCGTCTTCGCCCAGACCGATGGAGTCGTGGGTGTAAACCATCACCTGACGCCGTTTCATCAGCGCAGCCATACGTACGGCGTTACGTGC    <  SRR4302543.4233658/94‑1 (MQ=60)

                                                                                           GGGCCGTCTTCGCCCAGACCGATGGAGTCGTGGGTGTAAACCATCACCTGACGCTGTTTCATCAGCGCAGCCATACGTACGGCGTTACGTGCGT  >  SRR4302543.2775194/1‑94 (MQ=60)

                                                                                           GGGCCGTCTTCGCCCAGACCGATGGAGTCGTGGGTGTAAACCATCACCTGACGCTGTTTCATCAGCGCAGCCATACGTACGGCGTTACGTGCGT  >  SRR4302543.4404178/1‑94 (MQ=60)

GACCGCGGATTCAACCTGGTCACACGGACGCCATGTAGACATGTTCGGGGTTACGCGCAGAGAAGCGACCTGCTCAACCGGCTGGTGAGTCGGCCCGTCTTCGCCCAGACCGATGGAGTCGTGGGTGTAAACCATCACCTGACGCTGTTTCATCAGCGCAGCCATACGTACGGCGTTACGTGCGT  >  NC_000913/3078152‑3078336

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 2 ≤` `ATCG/ATCG` `< 24 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`