Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I1 R1	1696	279.3	15874187	97.8%	15524954	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,100,603	A→G	F90L (TTC→CTC)	yggH ←	hypothetical protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,100,603	0	A	G	100.0%	901.9 / NA	287	F90L (TTC→CTC)	yggH	hypothetical protein
Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (161/126); total (161/126)

Only 100 of 302 total aligned reads displayed.

GACACATCACGCGCAGGTTGCTTAAACCTTCTTCATGCGCAGAAGCCAGGCACGCACCAACGCCCGGTGAATGCACTTCAATGCCGAGGAAGTCCTGCTCAGGGCGATCTTTAGCCATTGCCACCAGCGACGCCCCCATGCCAAAACCAATCTCAAGCGTCACCGGCGCTTCACGGCCAA  >  NC_000913/3100513‑3100692

 acacATCACGCGCAGGTTGCTTAAACCTTCTTCATGCGCAGAAGCCAGGCACGCACCAACGCCCGGTGAATGCACTTCAATGCCGAGGAGGTc                                                                                        >  2:7114255/1‑93 (MQ=255)

  cacaTCACGCGCAGGTTGCTTAAACCTTCTTCATGCGCAGAAGCCAGGCACGCACCAACGCCCGGTGAATGCACTTCAATGCCGAGGAGGTcc                                                                                       <  2:4052019/93‑1 (MQ=255)

   acaTCACGCGCAGGTTGCTTAAACCTTCTTCATGCGCAGAAGCCAGGCACGCACCAACGCCCGGTGAATGCACTTCAATGCCGAGGAGGTCCt                                                                                      <  2:122069/93‑1 (MQ=255)

    caTCACGCGCAGGTTGCTTAAACCTTCTTCATGCGCAGAAGCCAGGCACGCACCAACGCCCGGTGAATGCACTTCAATGCCGAGGAGGTCCTg                                                                                     >  2:4365511/1‑93 (MQ=255)

     aTCACGCGCAGGTTGCTTAAACCTTCTTCATGCGCAGAAGCCAGGCACGCACCAACGCCCGGTGAATGCACTTCAATGCCGAGGAGGTCCTGc                                                                                    <  1:1433170/93‑1 (MQ=255)

     aTCACGCGCAGGTTGCTTAAACCTTCTTCATGCGCAGAAGCCAGGCACGCACCAACGCCCGGTGAATGCACTTCAATGCCGAGGAGGTCCTGc                                                                                    <  1:4771776/93‑1 (MQ=255)

       cACGCGCAGGTTGCTTAAACCTTCTTCATGCGCAGAAGCCAGGCACGCACCAACGCCCGGTGAATGCACTTCAATGCCGAGGAGGTCCTGCTc                                                                                  <  2:2408707/93‑1 (MQ=255)

        aCGCGCAGGTTGCTTAAACCTTCTTCATGCGCAGAAGCCAGGCACGCACCAACGCCCGGTGAATGCACTTCAATGCCGAGGAGGTCCTGCTCa                                                                                 >  2:5163551/1‑93 (MQ=255)

        aCGCGCAGGTTGCTTAAACCTTCTTCATGCGCAGAAGCCAGGCACGCACCAACGCCCGGTGAATGCACTTCAATGCCGAGGAGGTCCTGCTCa                                                                                 <  2:4162959/93‑1 (MQ=255)

         cgcgCAGGTTGCTTAAACCTTCTTCATGCGCAGAAGCCAGGCACGCACCAACGCCCGGTGAATGCACTTCAATGCCGAGGAGGTCCTGCTCAg                                                                                <  1:3170461/93‑1 (MQ=255)

         cgcgCAGGTTGCTTAAACCTTCTTCATGCGCAGAAGCCAGGCACGCACCAACGCCCGGTGAATGCACTTCAATGCCGAGGAGGTCCTGCTCAg                                                                                <  1:3874048/93‑1 (MQ=255)

         cgcgAAGGTTGCTTAAACCTTCTTCATGCGCAGAAGCCAGGCACGCACCAACGCCCGGTGAATGCACTTCAATGCCGAGGAGGACCTGCTCAg                                                                                <  2:7045282/93‑1 (MQ=255)

          gcgcAGGTTGCTTAAACCTTCTTCATGCGCAGAAGCCAGGCACGCACCAACGCCCGGTGAATGCACTTCAATGCCGAGGAGGTCCTGCTCAgg                                                                               <  1:5213558/93‑1 (MQ=255)

           gcgaGGTTGCTTAAACCTTCTTCATGCGCAGAAGCCAGGCACGCACCAACGCCCGGTGAATGCACTTCAATGCCGAGGAGGTCCTGCTCAggg                                                                              <  2:2552866/90‑1 (MQ=255)

           cgcAGGTTGCTTAAACCTTCTTCATGCGCAGAAGCCAGGCACGCACCAACGCCCGGTGAATGCACTTCAATGCCGAGGAGGTCCTGCTCAggg                                                                              <  2:5648276/93‑1 (MQ=255)

           cgcAGGTTGCTTAAACCTTCTTCATGCGCAGAAGCCAGGCACGCACCAACGCCCGGTGAATGCACTTCAATGCCGAGGAGGTCCTGCTCAggg                                                                              <  1:6437630/93‑1 (MQ=255)

               ggTTGCTTAAACCTTCTTCATGCGCAGAAGCCAGGCACGCACCAACGCCCGGTGAATGCACTTCAATGCCGAGGAGGTCCTGCTCAGGGCGAt                                                                          >  1:2906655/1‑93 (MQ=255)

                gTTGCTTAAACCTTCTTCATGCGCAGAAGCCAGGCACGCACCAACGCCCGGTGAATGCACTTCAATGCCGAGGAGGTCCTGCTCAGGGCGATc                                                                         <  2:3244317/93‑1 (MQ=255)

                 ttGCTTAAACCTTCTTCATGCGCAGAAGCCAGGCACGCACCAACGCCCGGTGAATGCACTTCAATGCCGAGGAGGTCCTGCTCAGGGCGATCt                                                                        >  1:5282234/1‑93 (MQ=255)

                 ttGCTTAAACCTTCTTCATGCGCAGAAGCCAGGCACGCACCAACGCCCGGTGAATGCACTTCAATGCCGAGGAGGTCCTGCTCAGGGCGATCt                                                                        >  1:6055636/1‑93 (MQ=255)

                 ttGCTTAAACCTTCTTCATGCGCAGAAGCCAGGCACGCACCAACGCCCGGTGAATGCACTTCAATGCCGAGGAGGTCCTGCTCAGGGCGATCt                                                                        >  2:6823202/1‑93 (MQ=255)

                  tGCTTAAACCTTCTTCATGCGCAGAAGCCAGGCACGCACCAACGCCCGGTGAATGCACTTCAATGCCGAGGAGGTCCTGCTCAGGGCGATCtt                                                                       <  1:5462112/93‑1 (MQ=255)

                    cTTAAACCTTCTTCATGCGCAGAAGCCAGGCACGCACCAACGCCCGGTGAATGCACTTCAATGCCGAGGAGGTCCTGCTCAGGGCGATCTTTa                                                                     <  2:6224647/93‑1 (MQ=255)

                     ttAAACCTTCTTCATGCGCAGAAGCCAGGCACGCACCAACGCCCGGTGAATGCACTTCAATGCCGAGGAGGTCCTGCTCAGGGCGATCTTTAg                                                                    >  1:4603642/1‑93 (MQ=255)

                     ttAAACCTTCTTCATGCGCAGAAGCCAGGCACGCACCAACGCCCGGTGAATGCACTTCAATGCCGAGGAGGTCCTGCTCAGGGCGATCTTTAg                                                                    >  1:7556126/1‑93 (MQ=255)

                      tAAACCTTCTTCATGCGCAGAAGCCAGGCACGCACCAACGCCCGGTGAATGCACTTCAATGCCGAGGAGGTCCTGCTCAGGGCGATCTTTAGc                                                                   <  2:3873127/93‑1 (MQ=255)

                      tAAACCTTCTTCATGCGCAGAAGCCAGGCACGCACCAACGCCCGGTGAATGCACTTCAATGCCGAGGAGGTCCTGCTCAGGGCGATCTTTAGc                                                                   >  2:1805519/1‑93 (MQ=255)

                        aaCCTTCTTCATGCGCAGAAGCCAGGCACGCACCAACGCCCGGTGAATGCACTTCAATGCCGAGGAGGTCCTGCTCAGGGCGATCTTTAGCCa                                                                 <  1:6789026/93‑1 (MQ=255)

                        aaCCTTCTTCATGCGCAGAAGCCAGGCACGCACCAACGCCCGGTGAATGCACTTCAATGCCGAGGAGGTCCTGCTCAGGGCGATCTTTAGCCa                                                                 >  1:3234348/1‑93 (MQ=255)

                        aaCCTTCTTCATGCGCAGAAGCCAGGCACGCACCAACGCCCGGTGAATGCACTTCAATGCCGAGGAGGTCCTGCTCAGGGCGATCTTTAGCCa                                                                 <  2:4816714/93‑1 (MQ=255)

                          ccTTCTTCATGCGCAGAAGCCAGGCACGCACCAACGCCCGGTGAATGCACTTCAATGCCGAGGAGGTCCTGCTCAGGGCGATCTTTAGCCAtt                                                               <  2:1554720/93‑1 (MQ=255)

                          ccTTCTTCATGCGCAGAAGCCAGGCACGCACCAACGCCCGGTGAATGCACTTCAATGCCGAGGAGGTCCTGCTCAGGGCGATCTTTAGCCAtt                                                               >  2:7338973/1‑93 (MQ=255)

                           cttcttCATGCGCAGAAGCCAGGCACGCACCAACGCCCGGTGAATGCACTTCAATGCCGAGGAGGTCCTGCTCAGGGCGATCTTTAGCCATTg                                                              >  1:6406352/1‑93 (MQ=255)

                            ttcttcATGCGCAGAAGCCAGGCACGCACCAACGCCCGGTGAATGCACTTCAATGCCGAGGAGGTCCTGCTCAGGGCGATCTTTAGCCATTGc                                                             >  2:2841508/1‑93 (MQ=255)

                             tcttcATGCGCAGAAGCCAGGCACGCACCAACGCCCGGTGAATGCACTTCAATGCCGAGGAGGTCCTGCTCAGGGCGATCTTTAGCCATTGcc                                                            >  1:7367776/1‑93 (MQ=255)

                               ttcATGCGCAGAAGCCAGGCACGCACCAACGCCCGGTGAATGCACTTCAATGCCGAGGAGGTCCTGCTCAGGGCGATCTTTAGCCATTGccac                                                          >  2:3308889/1‑93 (MQ=255)

                               ttcATGCGCAGAAGCCAGGCACGCACCAACGCCCGGTGAATGCACTTCAATGCCGAGGAGGTCCTGCTCAGGGCGATCTTTAGCCATTGccac                                                          <  2:4985118/93‑1 (MQ=255)

                               ttcATGCGCAGAAGCCAGGCACGCACCAACGCCCGGTGAATGCACTTCAATGCCGAGGAGGTCCTGCTCAGGGCGATCTTTAGCCATTGccac                                                          >  2:7704921/1‑93 (MQ=255)

                               ttcATGCGCAGAAGCCAGGCACGCACCAACGCCCGGTGAATGCACTTAAATGCCGAGGAGGTCCTGCTCAGGGCGATCTTTAGCCATTGccac                                                          >  1:5893624/1‑93 (MQ=255)

                                   tGCGCAGAAGCCAGGCACGCACCAACGCCCGGTGAATGCACTTCAATGCCGAGGGGGTCCTGCTCAGGGCGATCTTTAGCCATTGCCACCAgg                                                      >  2:3106848/1‑92 (MQ=255)

                                    gcgcAGAAGCCAGGCACGCACCAACGCCCGGTGAATGCACTTCAATGCCGAGGAGGTCCTGCTCAGGGCGATCTTTAGCCATTGCCACCAGCg                                                     >  1:2873778/1‑93 (MQ=255)

                                     cgcAGAAGCCAGGCACGCACCAACGCCCGGTGAATGCACTTCAATGCCGAGGAGGTCCTGCTCAGGGCGATCTTTAGCCATTGCCACCAGCGa                                                    <  2:2252549/93‑1 (MQ=255)

                                     cgcAGAAGCCAGGCACGCACCAACGCCCGGTGAATGCACTTCAATGCCGAGGAGGTCCTGCTCAGGGCGATCTTTAGCCATTGCCACCAGCGa                                                    >  2:4776306/1‑93 (MQ=255)

                                     cgcAGAAGCCAGGCACGCACCAACGCCCGGTGAATGCACTTCAATGCCGAGGAGGTCCTGCTCAGGGCGATCTTTAGCCATTGCCACCAGCGa                                                    <  2:804244/93‑1 (MQ=255)

                                      gcAGAAGCCAGGCACGCACCAACGCCCGGTGAATGCACTTCAATGCCGAGGAGGTCCTGCTCAGGGCGATCTTTAGCCATTGCCACCAGCGAc                                                   <  2:2188485/93‑1 (MQ=255)

                                       cAGAAGCCAGGCACGCACCAACGCCCGGTGAATGCACTTCAATGCCGAGGAGGTCCTGCTCAGGGCGATCTTTAGCCATTGCCACCAGCGACg                                                  >  1:6921778/1‑93 (MQ=255)

                                        aGAAGCCAGGCACGCACCAACGCCCGGTGAATGCACTTCAATGCCGAGGAGGTCCTGCTCAGGGCGATCTTTAGCCATTGCCACCAGCGACGc                                                 >  1:710415/1‑93 (MQ=255)

                                        aGAAGCCAGGCACGCACCAACGCCCGGTGAATGCACTTCAATGCCGAGGAGGTCCTGCTCAGGGCGATCTTTAGCCATTGCCACCAGCGACGc                                                 >  1:4942985/1‑93 (MQ=255)

                                         gAAGCCAGGCACGCACCAACGCCCGGTGAATGCACTTCAATGCCGAGGCGGTCCTGCTCAGAGCGATCTTCAGCCATTGCAACCAGCGACGcc                                                >  1:6541483/1‑93 (MQ=255)

                                         gAAGCCAGGCACGCACCAACGCCCGGTGAATGCACTTCAATGCCGAGGAGGTCCTGCTCAGGGCGATCTTTAGCCATTGCCACCAGCGACGcc                                                >  2:7860677/1‑93 (MQ=255)

                                         gAAGCCAGGCACGCACCAACGCCCGGTGAATGCACTTCAATGCCGAGGAGGTCCTGCTCAGGGCGATCTTTAGCCATTGCCACCAGCGACGcc                                                >  2:744841/1‑93 (MQ=255)

                                         gAAGCCAGGCACGCACCAACGCCCGGTGAATGCACTTCAATGCCGAGGAGGTCCTGCTCAGGGCGATCTTTAGCCATTGCCACCAGCGACGcc                                                >  1:3816848/1‑93 (MQ=255)

                                           aGCCAGGCACGCACCAACGCCCGGTGAATGCACTTCAATGCCGAGGAGGTCCTGCTCAGGGCGATCTTTAGCCATTGCCACCAGCGACGcccc                                              >  1:1710778/1‑93 (MQ=255)

                                            gCCAGGCACGCACCAACGCCCGGTGAATGCACTTCAATGCCGAGGAGGTCCTGCTCAGGGCGATCTTTAGCCATTGCCACCAGCGACGccccc                                             <  2:1062270/93‑1 (MQ=255)

                                            gCCAGGCACGCACCAACGCCCGGTGAATGCACTTCAATGCCGAGGAGGTCCTGCTCAGGGCGATCTTTAGCCATTGCCACCAGCGACGccccc                                             >  2:6508692/1‑93 (MQ=255)

                                             ccAGGCACGCACCAACGCCCGGTGAATGCACTTCAATGCCGAGGAGGTCCTGCTCAGGGCGATCTTTAGCCATTGCCACCAGCGACGCCCCCa                                            <  1:5593007/93‑1 (MQ=255)

                                             ccAGGCACGCACCAACGCCCGGTGAATGCACTTCAATGCCGAGGAGGTCCTGCTCAGGGCGATCTTTAGCCATTGCCACCAGCGACGCCCCCa                                            <  2:2079084/93‑1 (MQ=255)

                                             ccAGGCACGCACCAACGCCCGGTGAATGCACTTCAATGCCGAGGAGGTCCTGCTCAGGGCGATCTTTAGCCATTGCCACCAGCGACGCCCCCa                                            <  2:1680172/93‑1 (MQ=255)

                                              cAGGCACGCACCAACGCCCGGTGAATGCACTTCAATGCCGAGGAGGTCCTGCTCAGGGCGATCTTTAGCCATTGCCACCAGCGACGCCCCCAt                                           <  2:5921087/93‑1 (MQ=255)

                                              cAGGCACGCACCAACGCCCGGTGAATGCACTTCAATGCCGAGGAGGTCCTGCTCAGGGCGATCTTTAGCCATTGCCACCAGCGACGCCCCCAt                                           >  1:5993830/1‑93 (MQ=255)

                                              cAGGCACGCACCAACGCCCGGTGAATGCACTTCAATGCCGAGGAGGTCCTGCTCAGGGCGATCTTTAGCCACTGCCACCAGCGACGCCCCCAt                                           >  1:1240221/1‑93 (MQ=255)

                                                  cacgcacCAACGCCCGGTGAATGCACTTCAATGCCGAGGAGGTCCTGCTCAGGGCGATCTTTAGCCATTGCCACCAGCGACGCCCCCATGCCa                                       >  1:3387630/1‑93 (MQ=255)

                                                   acgcacCAACGCCCGGTGAATGCACTTCAATGCCGAGGAGGTCCTGCTCAGGGCGATCTTTAGCCATTGCCACCAGCGACGCCCCCATGCCaa                                      >  2:604246/1‑93 (MQ=255)

                                                    cgcacCAACGCCCGGTGAATGCACTTCAATGCCGAGGAGGTCCTGCTCAGGGCGATCTTTAGCGATTGCCACCAGCGACGCCCCCATGCCaaa                                     >  2:6555686/1‑93 (MQ=255)

                                                    cgcacCAACGCCCGGTGAATGCACTTCAATGCCGAGGAGGTCCTGCTCAGGGCGATCTTTAGCCATTGCCACCAGCGACGCCCCCATGCCaaa                                     >  2:6898533/1‑93 (MQ=255)

                                                     gcacCAACGCCCGGTGAATGCACTTCAATGCCGAGGAGGTCCTGCTCAGGGCGATCTTTAGCCATTGCCACCAGCGACGCCCCCATGCCaaaa                                    >  2:2284765/1‑93 (MQ=255)

                                                     gcacCAACGCCCGGTGAATGCACTTCAATGCCGAGGAGGTCCTGCTCAGGGCGATCTTTAGCCATTGCCACCAGCGACGCCCCCATGCCaaaa                                    <  2:3797495/93‑1 (MQ=255)

                                                      cacCAACGCCCGGTGAATGCACTTCAATGCCGAGGAGGTCCTGCTCAGGGCGATCTTTAGCCATTGCCACCAGCGACGCCCCCATGCCAAAAc                                   >  1:2307832/1‑93 (MQ=255)

                                                       acCAACGCCCGGTGAATGCACTTCAATGCCGAGGAGGTCCTGCTCAGGGCGATCTTTAGCCATTGCCACCAGCGACGCCCCCATGCCAAAAcc                                  >  1:6871474/1‑93 (MQ=255)

                                                        ccAACGCCCGGTGAATGCACTTCAATGCCGAGGAGGTCCTGCTCAGGGCGATCTTTAGCCATTGCCACCAGCGACGCCCCCATGCCAAAACCa                                 <  1:2422659/93‑1 (MQ=255)

                                                        ccAACGCCCGGTGAATGCACTTCAATGCCGAGGAGGTCCTGCTCAGGGCGATCTTTAGCCATTGCCACCAGCGACGCCCCCATGCCAAAACCa                                 <  2:6621196/93‑1 (MQ=255)

                                                        ccAACGCCCGGTGAATGCACTTCAATGCCGAGGAGGTCCTGCTCAGGGCGATCTTTAGCCATTGCCACCAGCGACGCCCCCATGCCAAAACCa                                 >  1:7481649/1‑93 (MQ=255)

                                                         cAACGCCCGGTGAATGCACTTCAATGCCGAGGAGGTCCTGCTCAGGGCGATCTTTAGCCATTGCCACCAGCGACGCCCCCATGCCAAAACCaa                                <  2:2957287/93‑1 (MQ=255)

                                                          aaCGCCCGGTGAATGCACTTCAATGCCGAGGAGGTCCTGCTCAGGGCGATCTTTAGCCATTGCCAGCAGCGACGCCCCCATGCCAAAACCAAt                               >  1:4512808/1‑93 (MQ=255)

                                                          aaCGCCCGGTGAATGCACTTCAATGCCGAGGAGGTCCTGCTCAGGGCGATCTTTAGCCATTGCCACCAGCGACGCCCCCATGCCAAAACCAAt                               >  2:1466060/1‑93 (MQ=255)

                                                          aaCGCCCGGTGAATGCACTTCAATGCCGAGGAGGTCCTGCTCAGGGCGATCTTTAGCCATTGCCACCAGCGACGCCCCCATGCCAAAACCAAt                               >  1:1607358/1‑93 (MQ=255)

                                                              cccGGTGAATGCACTTCAATGCCGAGGAGGTCCTGCTCAGGGCGATCTTTAGCCATTGCCACCAGCGACGCCCCCATGCCAAAACCAATCTCa                           <  2:5239528/93‑1 (MQ=255)

                                                               ccGGTGAATGCACTTCAATGCCGAGGAGGTCCTGCTCAGGGCGATCTTTAGCCATTGCCACCAGCGACGCCCCCATGCCAAAACCAATCTCaa                          <  1:5146034/93‑1 (MQ=255)

                                                               ccGGTGAATGCACTTCAATGCCGAGGAGGTCCTGCTCAGGGCGATCTTTAGCCATTGCCACCAGCGACGCCCCCATGCCAAAACCAATCTCaa                          <  2:3383296/93‑1 (MQ=255)

                                                                cGGTGAATGCACTTCAATGCCGAGGAGGTCCTGCTCAGGGCGATCTTTAGCCATTGCCACCAGCGACGCCCCCATGCCAAAACCAATCTCAAg                         <  2:7556487/93‑1 (MQ=255)

                                                                cGGTGAATGCACTTCAATGCCGAGGAGGTCCTGCTCAGGGCGATCTTTAGCCATTGCCACCAGCGACGCCCCCATGCCAAAACCAATCTCAAg                         <  1:4816041/93‑1 (MQ=255)

                                                                cGGTGAATGCACTTCAATGCCGAGGAGGTCCTGCTCAGGGCGATCTTTAGCCATTGCCACCAGCGACGCCCCCATGCCAAAACCAATCTCAAg                         <  1:4377752/93‑1 (MQ=255)

                                                                 ggTGAATGCACTTCAATGCCGAGGAGGTCCTGCTCAGGGCGATCTTTAGCCATTGCCACCAGCGACGCCCCCATGCCAAAACCAATCTCAAGc                        >  1:4010794/1‑93 (MQ=255)

                                                                   tGAATGCACTTCAATGCCGAGGAGGTCCTGCTCAGGGCGATCTTTAGCCATTGCCACCAGCGACGCCCCCATGCCAAAACCAATCTCAAGCGt                      >  1:2962067/1‑93 (MQ=255)

                                                                      aTGCACTTCAATGCCGAGGAGGTCCTGCTCAGGGCGATCTTTAGCCATTGCCACCAGCGACGCCCCCATGCCAAAACCAATCTCAAGCGTCAc                   >  2:2477709/1‑93 (MQ=255)

                                                                      aTGCACTTCAATGCCGAGGAGGTCCTGCTCAGGGCGATCTTTAGCCATTGCCACCAGCGACGCCCCCATGCCAAAACCAATCTCAAGCGTCAc                   <  1:812803/93‑1 (MQ=255)

                                                                      aTGCACTTCAATGCCGAGGAGGTCCTGCTCAGGGCGATCTTTAGCCATTGCCACCAGCGACGCCCCCATGCCAAAACCAATCTCAAGCGTCAc                   >  1:4665323/1‑93 (MQ=255)

                                                                      aTGCACTTCAATGCCGAGGAGGTCCTGCTCAGGGCGATCTTTAGCCATTGCCACCAGCGACGCCCCCATGCCAAAACCAATCTCAAGCGTCAc                   <  1:2213671/93‑1 (MQ=255)

                                                                          aCTTCAATGCCGAGGAGGTCCTGCTCAGGGCGATCTTTAGCCATTGCCACCAGCGACGCACCCATGCCAAAACCAATCTCAAGCGTCACCGgc               >  1:7651325/1‑93 (MQ=255)

                                                                           cTTCAATGCCGAGGAGGTCCTGCTCAGGGCGATCTTTAGCCATTGCCACCAGCGACGCCCCCATGCCAACACCAATCTCAAGCGTCACCGgcg              >  1:1279607/1‑93 (MQ=255)

                                                                           cTTCAATGCCGAGGAGGTCCTGCTCAGGGCGATCTTTAGCCATTGCCACCAGCGACGCCCCCATGCCAAAACCAATCTCAAGCGTCACCGgcg              >  1:621709/1‑93 (MQ=255)

                                                                           cTTCAATGCCGAGGAGGTCCTGCTCAGGGCGATCTTTAGCCATTGCCACCAGCGACGCCCCCATGCCAAAACCAATCTCAAGCGTCACCGgcg              <  2:1161946/93‑1 (MQ=255)

                                                                            ttCAATGCCGAGGAGGTCCTGCTCAGGGCGATCTTTAGCCATTGCCACCAGCGACGCCCCCATGCCAAAACCAATCTCAAGCGTCACCGgcgc             >  1:1932183/1‑93 (MQ=255)

                                                                            ttCAATGCCGAGGAGGTCCTGCTCAGGGCGATCTTTAGCCATTGCCACCAGCGACGCCCCCATGCCAAAACCAATCTCAAGCGTCACCGgcgc             >  1:1470697/1‑93 (MQ=255)

                                                                                 tGCCGAGGAGGTCCTGCTCAGGGCGATCTTTAGCCATTGCCACCAGCGACGCCCCCATGCCAAAACCAATCTCAAGCGTCACCGGCGCTTCAc        <  2:5346061/93‑1 (MQ=255)

                                                                                  gCCGAGGAGGTCCTGCTCAGGGCGATCTTTAGCCATTGCCACCAGCGACGCCCCCATGCCAAAACCAATCTCAAGCGTCACCGGCGCTTCACg       >  2:6191397/1‑93 (MQ=255)

                                                                                  gCCGAGGAGGTCCTGCTCAGGGCGATCTTTAGCCATTGCCACCAGCGACGCCCCCATGCCAAAACCAATCTCAAGCGTCACCGGCGCTTCACg       <  1:2727379/93‑1 (MQ=255)

                                                                                    cGAGGAGGTCCTGCTCAGGGCGATCTTTAGCCATTGCCACCAGCGACGCCCCCATGCCAAAACCAATCTCAAGCGTCACCGGCGCTTCACGGc     <  2:5752182/93‑1 (MQ=255)

                                                                                       ggAGGTCCTGCTCAGGGCGATCTTTAGCCATTGCCACCAGCGACGCCCCCATGCCAAAACCAATCTCAAGCGTCACCGGCGCTTCACGGCCaa  >  2:3522220/1‑93 (MQ=255)

                                                                                       ggAGGTCCTGCTCAGGGCGATCTTTAGCCATTGCCACCAGCGACGCCCCCATGCCAAAACCAATCTCAAGCGTCACCGGCGCTTCACGGCCaa  <  2:5585874/93‑1 (MQ=255)

GACACATCACGCGCAGGTTGCTTAAACCTTCTTCATGCGCAGAAGCCAGGCACGCACCAACGCCCGGTGAATGCACTTCAATGCCGAGGAAGTCCTGCTCAGGGCGATCTTTAGCCATTGCCACCAGCGACGCCCCCATGCCAAAACCAATCTCAAGCGTCACCGGCGCTTCACGGCCAA  >  NC_000913/3100513‑3100692

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 23 ≤` `ATCG/ATCG` `< 30 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

CGTGACACATCACGCGCAGGTTGCTTAAACCTTCTTCATGCGCAGAAGCCAGGCACGCACCAACGCCCGGTGAATGCACTTCAATGCCGAGGAAGTCCTGCTCAGGGCGATCTTTAGCCATTGCCACCAGCGACGCCCCCATGCCAAAACCAATCTCAAGCGTCACCGGCGCTTCACGGCCAAAAAG  >  NC_000913/3100510‑3100696

CGTGACACATCACGCGCAGGTTGCTTAAACCTTCTTCATGCGCAGAAGCCAGGCACGCACCAACGCCCGGTGAATGCACTTCAATGCCGAGGAG                                                                                               <  SRR4302543.1233337/94‑1 (MQ=60)

CGTGACACATCACGCGCAGGTTGCTTAAACCTTCTTCATGCGCAGAAGCCAGGCACGCACCAACGCCCGGTGAATGCACTTCAATGCCGAGGAG                                                                                               <  SRR4302543.5422991/94‑1 (MQ=60)

CGTGACACATCACGCGCAGGTTGCTTAAACCTTCTTCATGCGCAGAAGCCAGGCACGCACCAACGCCCGGTGAATGCACTTCAATGCCGAGGAG                                                                                               <  SRR4302543.5422992/94‑1 (MQ=60)

CGTGACACATCACGCGCAGGTTGCTTAAACCTTCTTCATGCGCAGAAGCCAGGCACGCACCAACGCCCGGTGAATGCACTTCAATGCCGAGGAG                                                                                               <  SRR4302543.3313018/94‑1 (MQ=60)

CGTGACACATCACGCGCAGGTTGCTTAAACCTTCTTCATGCGCAGAAGCCAGGCACGCACCAACGCCCGGTGAATGCACTTCAATGCCGAGGAG                                                                                               <  SRR4302543.7057984/94‑1 (MQ=60)

 GTGACACATCACGCGCAGGTTGCTTAAACCTTCTTCATGCGCAGAAGCCAGGCACGCACCAACGCCCGGTGAATGCACTTCAATGCCGAGGAGG                                                                                              >  SRR4302543.6292280/1‑94 (MQ=60)

  TGACACATCACGCGCAGGTTGCTTAAACCTTCTTCATGCGCAGAAGCCAGGCACGCACCAACGCCCGGTGAATGCACTTCAATGCCGAGGAGGT                                                                                             <  SRR4302543.3196261/94‑1 (MQ=60)

  TGACACATCACGCGCAGGTTGCTTAAACCTTCTTCATGCGCAGAAGCCAGGCACGCACCAACGCCCGGTGAATGCACTTCAATGCCGAGGAGGT                                                                                             <  SRR4302543.6963308/94‑1 (MQ=60)

   GACACATCACGCGCAGGTTGCTTAAACCTTCTTCATGCGCAGAAGCCAGGCACGCACCAACGCCCGGTGAATGCACTTCAATGCCGAGGAGGTC                                                                                            >  SRR4302543.6225367/1‑94 (MQ=60)

     CACATCACGCGCAGGTTGCTTAAACCTTCTTCATGCGCAGAAGCCAGGCACGCACCAACGCCCGGTGAATGCACTTCAATGCCGAGGAGGTCCT                                                                                          >  SRR4302543.2984135/1‑94 (MQ=60)

     CACATCACGCGCAGGTTGCTTAAACCTTCTTCATGCGCAGAAGCCAGGCACGCACCAACGCCCGGTGAATGCACTTCAATGCCGAGGAGGTCCT                                                                                          <  SRR4302543.5451863/94‑1 (MQ=60)

     CACATCACGCGCAGGTTGCTTAAACCTTCTTCATGCGCAGAAGCCAGGCACGCACCAACGCCCGGTGAATGCACTTCAATGCCGAGGAGGTCCT                                                                                          <  SRR4302543.614950/94‑1 (MQ=60)

      ACATCACGCGCAGGTTGCTTAAACCTTCTTCATGCGCAGAAGCCAGGCACGCACCAACGCCCGGTGAATGCACTTCAATGCCGAGGAGGTCCTG                                                                                         <  SRR4302543.72892/94‑1 (MQ=60)

      ACATCACGCGCAGGTTGCTTAAACCTTCTTCATGCGCAGAAGCCAGGCACGCACCAACGCCCGGTGAATGCACTTCAATGCCGAGGAGGTCCTG                                                                                         <  SRR4302543.2425653/94‑1 (MQ=60)

        ATCACGCGCAGGTTGCTTAAACCTTCTTCATGCGCAGAAGCCAGGCACGCACCAACGCCCGGTGAATGCACTTCAATGCCGAGGAGGTCCTGCT                                                                                       <  SRR4302543.4815384/94‑1 (MQ=60)

        ATCACGCGCAGGTTGCTTAAACCTTCTTCATGCGCAGAAGCCAGGCACGCACCAACGCCCGGTGAATGCACTTCAATGCCGAGGAGGTCCTGCT                                                                                       <  SRR4302543.1446130/94‑1 (MQ=60)

          CACGCGCAGGTTGCTTAAACCTTCTTCATGCGCAGAAGCCAGGCACGCACCAACGCCCGGTGAATGCACTTCAATGCCGAGGAGGTCCTGCTCA                                                                                     <  SRR4302543.3876494/94‑1 (MQ=60)

            CGCGCAGGTTGCTTAAACCTTCTTCATGCGCAGAAGCCAGGCACGCACCAACGCCCGGTGAATGCACTTCAATGCCGAGGAGGTCCTGCTCAGG                                                                                   <  SRR4302543.3199019/94‑1 (MQ=60)

            CGCGCAGGTTGCTTAAACCTTCTTCATGCGCAGAAGCCAGGCACGCACCAACGCCCGGTGAATGCACTTCAATGCCGAGGAGGTCCTGCTCAGG                                                                                   <  SRR4302543.5996773/94‑1 (MQ=60)

            CGCGCAGGTTGCTTAAACCTTCTTCATGCGCAGAAGCCAGGCACGCACCAACGCCCGGTGAATGCACTTCAATGCCGAGGAGGTCCTGCTCAGG                                                                                   <  SRR4302543.3908249/94‑1 (MQ=60)

            CGCGCAGGTTGCTTAAACCTTCTTCATGCGCAGAAGCCAGGCACGCACCAACGCCCGGTGAATGCACTTCAATGCCGAGGAGGTCCTGCTCAGG                                                                                   <  SRR4302543.3199018/94‑1 (MQ=60)

            CGCGCAGGTTGCTTAAACCTTCTTCATGCGCAGAAGCCAGGCACGCACCAACGCCCGGTGAATGCACTTCAATGCCGAGGAGGTCCTGCTCAGG                                                                                   <  SRR4302543.3108593/94‑1 (MQ=60)

             GCGCAGGTTGCTTAAACCTTCTTCATGCGCAGAAGCCAGGCACGCACCAACGCCCGGTGAATGCACTTCAATGCCGAGGAGGTCCTGCTCAGGG                                                                                  >  SRR4302543.5294816/1‑94 (MQ=60)

             GCGCAGGTTGCTTAAACCTTCTTCATGCGCAGAAGCCAGGCACGCACCAACGCCCGGTGAATGCACTTCAATGCCGAGGAGGTCCTGCTCAGGG                                                                                  <  SRR4302543.5260531/94‑1 (MQ=60)

              CGCAGGTTGCTTAAACCTTCTTCATGCGCAGAAGCCAGGCACGCACCAACGCCCGGTGAATGCACTTCAATGCCGAGGAGGTCCTGCTCAGGGC                                                                                 <  SRR4302543.6498282/94‑1 (MQ=60)

                CAGGTTGCTTAAACCTTCTTCATGCGCAGAAGCCAGGCACGCACCAACGCCCGGTGAATGCACTTCAATGCCGAGGAGGTCCTGCTCAGGGCGA                                                                               >  SRR4302543.2489412/1‑94 (MQ=60)

                 AGGTTGCTTAAACCTTCTTCATGCGCAGAAGCCAGGCACGCACCAACGCCCGGTGAATGCACTTCAATGCCGAGGAGGTCCTGCTCAGGGCGAT                                                                              >  SRR4302543.4878449/1‑94 (MQ=60)

                 AGGTTGCTTAAACCTTCTTCATGCGCAGAAGCCAGGCACGCACCAACGCCCGGTGAATGCACTTCAATGCCGAGGAGGTCCTGCTCAGGGCGAT                                                                              >  SRR4302543.2933081/1‑94 (MQ=60)

                  GGTTGCTTAAACCTTCTTCATGCGCAGAAGCCAGGCACGCACCAACGCCCGGTGAATGCACTTCAATGCCGAGGAGGTCCTGCTCAGGGCGATC                                                                             <  SRR4302543.2237537/94‑1 (MQ=60)

                   GTTGCTTAAACCTTCTTCATGCGCAGAAGCCAGGCACGCACCAACGCCCGGTGAATGCACTTCAATGCCGAGGAGGTCCTGCTCAGGGCGATCT                                                                            >  SRR4302543.5329907/1‑94 (MQ=60)

                   GTTGCTTAAACCTTCTTCATGCGCAGAAGCCAGGCACGCACCAACGCCCGGTGAATGCACTTCAATGCCGAGGAGGTCCTGCTCAGGGCGATCT                                                                            >  SRR4302543.6112961/1‑94 (MQ=60)

                     TGCTTAAACCTTCTTCATGCGCAGAAGCCAGGCACGCACCAACGCCCGGTGAATGCACTTCAATGCCGAGGAGGTCCTGCTCAGGGCGATCTTT                                                                          <  SRR4302543.5861622/94‑1 (MQ=60)

                     TGCTTAAACCTTCTTCATGCGCAGAAGCCAGGCACGCACCAACGCCCGGTGAATGCACTTCAATGCCGAGGAGGTCCTGCTCAGGGCGATCTTT                                                                          <  SRR4302543.2795860/94‑1 (MQ=60)

                     TGCTTAAACCTTCTTCATGCGCAGAAGCCAGGCACGCACCAACGCCCGGTGAATGCACTTCAATGCCGAGGAGGTCCTGCTCAGGGCGATCTTT                                                                          <  SRR4302543.5511610/94‑1 (MQ=60)

                       CTTAAACCTTCTTCATGCGCAGAAGCCAGGCACGCACCAACGCCCGGTGAATGCACTTCAATGCCGAGGAGGTCCTGCTCAGGGCGATCTTTAG                                                                        >  SRR4302543.6584166/1‑94 (MQ=60)

                       CTTAAACCTTCTTCATGCGCAGAAGCCAGGCACGCACCAACGCCCGGTGAATGCACTTCAATGCCGAGGAGGTCCTGCTCAGGGCGATCTTTAG                                                                        >  SRR4302543.4645466/1‑94 (MQ=60)

                       CTTAAACCTTCTTCATGCGCAGAAGCCAGGCACGCACCAACGCCCGGTGAATGCACTTCAATGCCGAGGAGGTCCTGCTCAGGGCGATCTTTAG                                                                        >  SRR4302543.4645467/1‑94 (MQ=60)

                       CTTAAACCTTCTTCATGCGCAGAAGCCAGGCACGCACCAACGCCCGGTGAATGCACTTCAATGCCGAGGAGGTCCTGCTCAGGGCGATCTTTAG                                                                        >  SRR4302543.3207709/1‑94 (MQ=60)

                       CTTAAACCTTCTTCATGCGCAGAAGCCAGGCACGCACCAACGCCCGGTGAATGCACTTCAATGCCGAGGAGGTCCTGCTCAGGGCGATCTTTAG                                                                        >  SRR4302543.2940844/1‑94 (MQ=60)

                       CTTAAACCTTCTTCATGCGCAGAAGCCAGGCACGCACCAACGCCCGGTGAATGCACTTCAATGCCGAGGAGGTCCTGCTCAGGGCGATCTTTAG                                                                        >  SRR4302543.7628073/1‑94 (MQ=60)

                         TAAACCTTCTTCATGCGCAGAAGCCAGGCACGCACCAACGCCCGGTGAATGCACTTCAATGCCGAGGAGGTCCTGCTCAGGGCGATCTTTAGCC                                                                      >  SRR4302543.6481382/1‑94 (MQ=60)

                          AAACCTTCTTCATGCGCAGAAGCCAGGCACGCACCAACGCCCGGTGAATGCACTTCAATGCCGAGGAGGTCCTGCTCAGGGCGATCTTTAGCCA                                                                     >  SRR4302543.3263603/1‑94 (MQ=60)

                          AAACCTTCTTCATGCGCAGAAGCCAGGCACGCACCAACGCCCGGTGAATGCACTTCAATGCCGAGGAGGTCCTGCTCAGGGCGATCTTTAGCCA                                                                     <  SRR4302543.764940/94‑1 (MQ=60)

                          AAACCTTCTTCATGCGCAGAAGCCAGGCACGCACCAACGCCCGGTGAATGCACTTCAATGCCGAGGAGGTCCTGCTCAGGGCGATCTTTAGCCA                                                                     >  SRR4302543.4875901/1‑94 (MQ=60)

                           AACCTTCTTCATGCGCAGAAGCCAGGCACGCACCAACGCCCGGTGAATGCACTTCAATGCCGAGGAGGTCCTGCTCAGGGCGATCTTTAGCCAT                                                                    <  SRR4302543.1884432/94‑1 (MQ=60)

                           AACCTTCTTCATGCGCAGAAGCCAGGCACGCACCAACGCCCGGTGAATGCACTTCAATGCCGAGGAGGTCCTGCTCAGGGCGATCTTTAGCCAT                                                                    <  SRR4302543.7476412/94‑1 (MQ=60)

                           AACCTTCTTCATGCGCAGAAGCCAGGCACGCACCAACGCCCGGTGAATGCACTTCAATGCCGAGGAGGTCCTGCTCAGGGCGATCTTTAGCCAT                                                                    <  SRR4302543.6853140/94‑1 (MQ=60)

                            ACCTTCTTCATGCGCAGAAGCCAGGCACGCACCAACGCCCGGTGAATGCACTTCAATGCCGAGGAGGTCCTGCTCAGGGCGATCTTTAGCCATT                                                                   <  SRR4302543.1332760/94‑1 (MQ=60)

                             CCTTCTTCATGCGCAGAAGCCAGGCACGCACCAACGCCCGGTGAATGCACTTCAATGCCGAGGAGGTCCTGCTCAGGGCGATCTTTAGCCATTG                                                                  >  SRR4302543.6466685/1‑94 (MQ=60)

                             CCTTCTTCATGCGCAGAAGCCAGGCACGCACCAACGCCCGGTGAATGCACTTCAATGCCGAGGAGGTCCTGCTCAGGGCGATCTTTAGCCATTG                                                                  <  SRR4302543.4732684/94‑1 (MQ=60)

                              CTTCTTCATGCGCAGAAGCCAGGCACGCACCAACGCCCGGTGAATGCACTTCAATGCCGAGGAGGTCCTGCTCAGGGCGATCTTTAGCCATTGC                                                                 >  SRR4302543.2925375/1‑94 (MQ=60)

                               TTCTTCATGCGCAGAAGCCAGGCACGCACCAACGCCCGGTGAATGCACTTCAATGCCGAGGAGGTCCTGCTCAGGGCGATCTTTAGCCATTGCC                                                                <  SRR4302543.3115749/94‑1 (MQ=60)

                               TTCTTCATGCGCAGAAGCCAGGCACGCACCAACGCCCGGTGAATGCACTTCAATGCCGAGGAGGTCCTGCTCAGGGCGATCTTTAGCCATTGCC                                                                >  SRR4302543.7438615/1‑94 (MQ=60)

                               TTCTTCATGCGCAGAAGCCAGGCACGCACCAACGCCCGGTGAATGCACTTCAATGCCGAGGAGGGCCTGCTCAGGGCGATCTTTAGCCAccgcc                                                                >  SRR4302543.6080551/1‑89 (MQ=60)

                                 CTTCATGCGCAGAAGCCAGGCACGCACCAACGCCCGGTGAATGCACTTAAATGCCGAGGAGGTCCTGCTCAGGGCGATCTTTAGCCATTGCCAC                                                              >  SRR4302543.5947367/1‑94 (MQ=60)

                                 CTTCACGCGCAGAAGCCAGGCACGCACCAACGCCCGGTGAATGCACTTCAATGCCGAGGAGGTCCTGCTCAGGTCGATCTTTAGCCATTGCCAC                                                              <  SRR4302543.812692/94‑1 (MQ=60)

                                   TCATGCGCAGAAGCCAGGCACGCACCAACGCCCGGTGAATGCACTTCAATGCCGAGGAGGTCCTGCTCAGGGCGATCTTTAGCCATTGCCACCA                                                            <  SRR4302543.1273989/94‑1 (MQ=60)

                                   TCATGCGCAGAAGCCAGGCACGCACCAACGCCCGGTGAATGCACTTCAATGCCGAGGAGGTCCTGCTCAGGGCGATCTTTAGCCATTGCCACCA                                                            >  SRR4302543.7690134/1‑94 (MQ=60)

                                   TCATGCGCAGAAGCCAGGCACGCACCAACGCCCGGTGAATGCACTTCAATGCCGAGGAGGTCCTGCTCAGGGCGATCTTTAGCCATTGCCACCA                                                            >  SRR4302543.717485/1‑94 (MQ=60)

                                   TCATGCGCAGAAGCCAGGCACGCACCAACGCCCGGTGAATGCACTTCAATGCCGAGGAGGTCCTGCTCAGGGCGATCTTTAGCCATTGCCACCA                                                            >  SRR4302543.7562332/1‑94 (MQ=60)

                                      TGCGCAGAAGCCAGGCACGCACCAACGCCCGGTGAATGCACTTCAATGCCGAGGAGGTCCTGCTCAGGGCGATCTTTAGCCATTGCCACCAGCG                                                         <  SRR4302543.4692002/94‑1 (MQ=60)

                                      TGCGCAGAAGCCAGGCACGCACCAACGCCCGGTGAATGCACTTCAATGCCGAGGAGGTCCTGCTCAGGGCGATCTTTAGCCATTGCCACCAGCG                                                         >  SRR4302543.2899938/1‑94 (MQ=60)

                                        CGCAGAAGCCAGGCACGCACCAACGCCCGGTGAATGCACTTCAATGCCGAGGAGGTCCTGCTCAGGGCGATCTTTAGCCATTGCCACCAGCGAC                                                       <  SRR4302543.5518321/94‑1 (MQ=60)

                                        CGCAGAAGCCAGGCACGCACCAACGCCCGGTGAATGCACTTCAATGCCGAGGAGGTCCTGCTCAGGGCGATCTTTAGCCATTGCCACCAGCGAC                                                       <  SRR4302543.2270994/94‑1 (MQ=60)

                                        CGCAGAAGCCAGGCACGCACCAACGCCCGGTGAATGCACTTCAATGCCGAGGAGGTCCTGCTCAGGGCGATCTTTAGCCATTGCCACCAGCGAC                                                       <  SRR4302543.3324845/94‑1 (MQ=60)

                                         GCAGAAGCCAGGCACGCACCAACGCCCGGTGAATGCACTTCAATGCCGAGGAGGTCCTGCTCAGGGCGATCTTTAGCCATTGCCACCAGCGACG                                                      >  SRR4302543.6986860/1‑94 (MQ=60)

                                          CAGAAGCCAGGCACGCACCAACGCCCGGTGAATGCACTTCAATGCCGAGGAGGTCCTGCTCAGGGCGATCTTTAGCCATTGCCACCAGCGACGC                                                     >  SRR4302543.716865/1‑94 (MQ=60)

                                          CAGAAGCCAGGCACGCACCAACGCCCGGTGAATGCACTTCAATGCCGAGGAGGTCCTGCTCAGGGCGATCTTTAGCCATTGCCACCAGCGACGC                                                     >  SRR4302543.4987995/1‑94 (MQ=60)

                                          CAGAAGCCAGGCACGCACCAACGCCCGGTGAATGCACTTCAATGCCGAGGAGGGCCTGCTCAGGGCGATCCTTAGCCATTGCCACCAGCGACGC                                                     >  SRR4302543.4724447/1‑94 (MQ=60)

                                           AGAAGCCAGGCACGCACCAACGCCCGGTGAATGCACTTCAATGCCGAGGCGGTCCTGCTCAGAGCGATCTTCAGCCATTGCAACCAGCGACGCC                                                    >  SRR4302543.6603056/1‑94 (MQ=60)

                                           AGAAGCCAGGCACGCACCAACGCCCGGTGAATGCACTTCAATGCCGAGGAGGTCCTGCTCAGGGCGATCTTTAGCCATTGCCACCAGCGACGCC                                                    >  SRR4302543.6933235/1‑94 (MQ=60)

                                           AGAAGCCAGGCACGCACCAACGCCCGGTGAATGCACTTCAATGCCGAGGAGGTCCTGCTCAGGGCGATCTTTAGCCATTGCCACCAGCGACGCC                                                    >  SRR4302543.3850500/1‑94 (MQ=60)

                                           AGAAGCCAGGCACGCACCAACGCCCGGTGAATGCACTTCAATGCCGAGGAGGTCCTGCTCAGGGCGATCTTTAGCCATTGCCACCAGCGACGCC                                                    <  SRR4302543.145776/94‑1 (MQ=60)

                                            GAAGCCAGGCACGCACCAACGCCCGGTGAATGCACTTCAATGCCGAGGAGGTCCTGCTCAGGGCGATCTTTAGCCATTGCCACCAGCGACGCCC                                                   >  SRR4302543.2111688/1‑94 (MQ=60)

                                             AAGCCAGGCACGCACCAACGCCCGGTGAATGCACTTCAATGCCGAGGAGGTCCTGCTCAGGGCGATCTTTAGCCATTGCCACCAGCGACGCCCC                                                  >  SRR4302543.5003824/1‑94 (MQ=60)

                                             AAGCCAGGCACGCACCAACGCCCGGTGAATGCACTTCAATGCCGAGGAGGTCCTGCTCAGGGCGATCTTTAGCCATTGCCACCAGCGACGCCCC                                                  >  SRR4302543.1726080/1‑94 (MQ=60)

                                                CCAGGCTCGCACCAACGCCCGGTGAAGGCACCTCAATGCCGAGGAGGTCCTGTTCAGGGCGATCTTTAGCCAGTGCCACCAGCGATGCCCCCAT                                               >  SRR4302543.7069616/1‑94 (MQ=60)

                                                CCAGGCACGCACCAACGCCCGGTGAATGCACTTCAATGCCGAGGAGGTCCTGCTCAGGGCGATCTTTAGCCATTGCCACCAGCGACGCCCCCAT                                               >  SRR4302543.1815731/1‑94 (MQ=60)

                                                CCAGGCACGCACCAACGCCCGGTGAATGCACTTCAATGCCGAGGAGGTCCTGCTCAGGGCGATCTTTAGCCATTGCCACCAGCGACGCCCCCAT                                               <  SRR4302543.3267122/94‑1 (MQ=60)

                                                CCAGGCACGCACCAACGCCCGGTGAATGCACTTCAATGCCGAGGAGGTCCTGCTCAGGGCGATCTTTAGCCATTGCCACCAGCGACGCCCCCAT                                               <  SRR4302543.5643951/94‑1 (MQ=60)

                                                CCAGGCACGCACCAACGCCCGGTGAATGCACTTCAATGCCGAGGAGGTCCTGCTCAGGGCGATCTTTAGCCATTGCCACCAGCGACGCCCCCAT                                               >  SRR4302543.6048774/1‑94 (MQ=60)

                                                CCAGGCACGCACCAACGCCCGGTGAATGCACTTCAATGCCGAGGAGGTCCTGCTCAGGGCGATCTTTAGCCACTGCCACCAGCGACGCCCCCAT                                               >  SRR4302543.1251368/1‑94 (MQ=60)

                                                CCAGGCACGCACCAACGCCCGGTGAATGCACTTCAATGCCGAGGAGGGCCTGCTCAGGGCGATCTTTAGCCATTGCCACCAGCGACGCCCCCAT                                               >  SRR4302543.6048775/1‑94 (MQ=60)

                                                 CAGGCACGCACCAACGCCCGGTGAATGCACTTCAATGCCGAGGAGGTCCTGCTCAGGGCGATCTTTAGCCATTGCCACCAGCGACGCCCCCATG                                              >  SRR4302543.4460253/1‑94 (MQ=60)

                                                 CAGGCACGCACCAACGCCCGGTGAATGCACTTCAATGCCGAGGAGGTCCTGCTCAGGGCGATCTTTAGCCATTGCCACCAGCGACGCCCCCATG                                              <  SRR4302543.578299/94‑1 (MQ=60)

                                                  AGGCACGCACCAACGCCCGGTGAATGCACTTCAATGCCGAGGAGGTCCTGCTCAGGGCGATCTTTAGCCATTGCCACCAGCGACGCCCCCATGC                                             <  SRR4302543.4123499/94‑1 (MQ=60)

                                                  AGGCACGCACCAACGCCCGGTGAATGCACTTCAATGCCGAGGAGGTCCTGCTCAGGGCGATCTTTAGCCATTGCCACCAGCGACGCCCCCATGC                                             >  SRR4302543.291577/1‑94 (MQ=60)

                                                    GCACGCACCAACGCCCGGTGAATGCACTTCAATGCCGAGGAGGTCCTGCTCAGGGCGATCTTTAGCCATTGCCACCAGCGACGCCCCCATGCCA                                           >  SRR4302543.3418001/1‑94 (MQ=60)

                                                     CACGCACCAACGCCCGGTGAATGCACTTCAATGCCGAGGAGGTCCTGCTCAGGGCGATCTTTAGCCATTGCCACCAGCGACGCCCCCATGCCAA                                          >  SRR4302543.1506121/1‑94 (MQ=60)

                                                      ACGCACCAACGCCCGGTGAATGCACTTCAATGCCGAGGAGGTCCTGCTCAGGGCGATCTTTAGCCATTGCCACCAGCGACGCCCCCATGCCAAA                                         >  SRR4302543.6306804/1‑94 (MQ=60)

                                                      ACGCACCAACGCCCGGTGAATGCACTTCAATGCCGAGGAGGTCCTGCTCAGGGCGATCTTTAGCCATTGCCACCAGCGACGCCCCCATGCCAAA                                         >  SRR4302543.499568/1‑94 (MQ=60)

                                                       CGCACCAACGCCCGGTGAATGCACTTCAATGCCGAGGAGGTCCTGCTCAGGGCGATCTTTAGCCATTGCCACCAGCGACGCCCCCATGCCAAAA                                        >  SRR4302543.5237442/1‑94 (MQ=60)

                                                       CGCACCAACGCCCGGTGAATGCACTTCAATGCCGAGGAGGTCCTGCTCAGGGCGATCTTTAGCCATTGCCACCAGCGACGCCCCCATCCCAACA                                        >  SRR4302543.531242/1‑94 (MQ=60)

                                                        GCACCAACGCCCGGTGAATGCACTTCAATGCCGAGGAGGTCCTGCTCAGGGCGATCTTTAGCCATTGCCACCAGCGACGCCCCCATGCCAAAAC                                       >  SRR4302543.2328846/1‑94 (MQ=60)

                                                         CACCAACGCCCGGTGAATGCACTTCAATGCCGAGGAGGTCCTGCTCAGGGCGATCTTTAGCCATTGCCACCAGCGACGCCCCCATGCCAAAACC                                      >  SRR4302543.3777888/1‑94 (MQ=60)

                                                         CACCAACGCCCGGTGAATGCACTTCAATGCCGAGGAGGTCCTGCTCAGGGCGATCTTTAGCCATTGCCACCAGCGACGCCCCCATGCCAAAACC                                      >  SRR4302543.6936190/1‑94 (MQ=60)

                                                         CACCAACGCCCGGTGAATGCACTTCAATGCCGAGGAGGTCCTGCTCAGGGCGATCTTTAGCCATTGCCACCAGCGACGCCCCCATGCCAAAACC                                      <  SRR4302543.3694459/94‑1 (MQ=60)

                                                         CACCAACGCCCGGTGAATGCACTTCAATGCCGAGGAGGTCCTGCTCAGGGCGATCTTTAGCCATTGCCACCAGCGACGCCCCCATGCCAAAACC                                      >  SRR4302543.7479862/1‑94 (MQ=60)

                                                          ACCAACGCCCGGTGAATGCACTTCAATGCCGAGGAGGTCCTGCTCAGGGCGATCTTTAGCCATTGCCACCAGCGACGCCCCCATGCCAAAACCA                                     >  SRR4302543.7553264/1‑94 (MQ=60)

                                                          ACCAACGCCCGGTGAATGCACTTCAATGCCGAGGAGGTCCTGCTCAGGGCGATCTTTAGCCATTGCCACCAGCGACGCCCCCATGCCAAAACCA                                     >  SRR4302543.7553265/1‑94 (MQ=60)

                                                           CCAACGCCCGGTGAATGCACTTCAATGCCGAGGAGGTCCTGCTCAGGGCGATCTTTAGCCATTGCCACCAGCGACGCCCCCATGCCAAAACCAA                                    >  SRR4302543.6890545/1‑94 (MQ=60)

                                                           CCAACGCCCGGTGAATGCACTTCAATGCCGAGGAGGTCCTGCTCAGGGCGATCTTTAGCCATTGCCACCAGCGACGCCCCCATGCCAAAACCAA                                    <  SRR4302543.2444529/94‑1 (MQ=60)

                                                            CAACGCCCGGTGAATGCACTTCAATGCCGAGGAGGTCCTGCTCAGGGCGATCTTTAGCCATTGCCAGCAGCGACGCCCCCATGCCAAAACCAAT                                   >  SRR4302543.4553846/1‑94 (MQ=60)

                                                            CAACGCCCGGTGAATGCACTTCAATGCCGAGGAGGTCCTGCTCAGGGCGATCTTTAGCCATTGCCACCAGCGACGCCCCCATGCCAAAACCAAT                                   >  SRR4302543.5391365/1‑94 (MQ=60)

                                                            CAACGCCCGGTGAATGCACTTCAATGCCGAGGAGGTCCTGCTCAGGGCGATCTTTAGCCATTGCCACCAGCGACGCCCCCATGCCAAAACCAAT                                   >  SRR4302543.1621693/1‑94 (MQ=60)

                                                             AACGCCCGGTGAATGCACTTCAATGCCGAGGAGGTCCTGCTCAGGGCGATCTTTAGCCATTGCCACCAGCGACGCCCCCATGCCAAAACCAATC                                  <  SRR4302543.4851751/94‑1 (MQ=60)

                                                              ACGCCCGGTGAATGCACTTCAATGCCGAGGAGGTCCTGCTCAGGGCGATCTTTAGCCATTGCCACCAGCGACGCCCCCATGCCAAAACCAATCT                                 <  SRR4302543.6685983/94‑1 (MQ=60)

                                                              ACGCCCGGTGAATGCACTTCAATGCCGAGGAGGTCCTGCTCAGGGCGATCTTTAGCCATTGCCACCAGCGACGCCCCCATGCCAAAACCAATCT                                 <  SRR4302543.6332044/94‑1 (MQ=60)

                                                               CGCCCGGTGAATGCACTTCAATGCCGAGGAGGTCCTGCTCAGGGCGATCTTTAGCCATTGCCACCAGCGACGCCCCCATGCCAAAACCAATCTC                                >  SRR4302543.6000533/1‑94 (MQ=60)

                                                               CGCCCGGTGAATGCACTTCAATGCCGAGGAGGTCCTGCTCAGGGCGATCTTTAGCCATTGCCACCAGCGACGCCCCCATGCCAAAACCAATCTC                                <  SRR4302543.453680/94‑1 (MQ=60)

                                                                GCCCGGTGAATGCACTTCAATGCCGAGGAGGTCCTGCTCAGGGCGATCTTTAGCCATTGCCACCAGCGACGCCCCCATGCCAAAACCAATCTCA                               >  SRR4302543.2660026/1‑94 (MQ=60)

                                                                 CCCGGTGAATGCACTTCAATGCCGAGGAGGTCCTGCTCAGGGCGATCTTTAGCCATTGCCACCAGCGACGCCCCCATGCCAAAACCAATCTCAA                              >  SRR4302543.2224076/1‑94 (MQ=60)

                                                                 CCCGGTGAATGCACTTCAATGCCGAGGAGGTCCTGCTCAGGGCGATCTTTAGCCATTGCCACCAGCGACGCCCCCATGCCAAAACCAATCTCAA                              <  SRR4302543.6738307/94‑1 (MQ=60)

                                                                 CCCGGTGAATGCACTTCAATGCCGAGGAGGTCCTGCTCAGGGCGATCTTTAGCCATTGCCACCAGCGACGCCCCCATGCCAAAACCAATCTCAA                              >  SRR4302543.1455943/1‑94 (MQ=60)

                                                                  CCGGTGAATGCACTTCAATGCCGAGGAGGTCCTGCTCAGGGCGATCTTTAGCCATTGCCACCAGCGACGCCCCCATGCCAAAACCAATCTCAAG                             <  SRR4302543.5192551/94‑1 (MQ=60)

                                                                  CCGGTGAACGCCCTTCAATGCCGAGGAGGTCCATCTCAGGGCGATCTTTAGCCATTGCCACCAGCGACGCCCCCATGCCAAAACCAATCTCAAG                             <  SRR4302543.4236835/94‑1 (MQ=60)

                                                                   CGGTGAATGCACTTCAATGCCGAGGAGGTCCTGCTCAGGGCGATCTTTAGCCATTGCCACCAGCGACGCCCCCATGCCAAAACCAATCTCAAGC                            >  SRR4302543.7762490/1‑94 (MQ=60)

                                                                   CGGTGAATGCACTTCAATGCCGAGGAGGTCCTGCTCAGGGCGATCTTTAGCCATTGCCACCAGCGACGCCCCCATGCCAAAACCAATCTCAAGC                            >  SRR4302543.4046600/1‑94 (MQ=60)

                                                                   CGGTGAATGCACTTCAATGCCGAGGAGGTCCTGCTCAGGGCGATCTTTAGCCATTGCCACCAGCGACGCCCCCATGCCAAAACCAATCTCAAGC                            <  SRR4302543.4860012/94‑1 (MQ=60)

                                                                   CGGTGAATGCACTTCAATGCCGAGGAGGTCCTGCTCAGGGCGATCTTTAGCCATTGCCACCAGCGACGCCCCCATGCCAAAACCAATCTCAAGC                            <  SRR4302543.4417428/94‑1 (MQ=60)

                                                                   CGGTGAATGCACTTCAATGCCGAGGAGGTCCTGCTCAGGGCGATCTTTAGCCATTGCCACCAGCGACGCCCCCATGCCAAAACCAATCTCAAGC                            <  SRR4302543.4817248/94‑1 (MQ=60)

                                                                    GGTGAATGCACTTCAATGCCGAGGAGGTCCTGCTCAGGGCGATCTTTAGCCATTGCCACCAGCGACGCCCCCATGCCAAAACCAATCTCAAGCG                           >  SRR4302543.281637/1‑94 (MQ=60)

                                                                    GGTGAATGCACTTCAATGCCGAGGAGGTCCTGCTCAGGGCGATCTTTAGCCATTGCCACCAGCGACGCCCCCATGCCAAAACCAATCTCAAGCG                           >  SRR4302543.1259775/1‑94 (MQ=60)

                                                                     GTGAATGCACTTCAATGCCGAGGAGGTCCTGCTCAGGGCGATCTTTAGCCATTGCCACCAGCGACGCCCCCATGCCAAAACCAATCTCAAGCGT                          >  SRR4302543.2988961/1‑94 (MQ=60)

                                                                       GAATGCACTTCAATGCCGAGGAGGTCCTGCTCAGGGCGATCTTTAGCCATTGCCACCAGCGACGCCCCCATGCCAAAACCAATCTCAAGCGTCA                        <  SRR4302543.6590118/94‑1 (MQ=60)

                                                                        AATGCACTTCAATGCCGAGGAGGTCCTGCTCAGGGCGATCTTTAGCCATTGCCACCAGCGACGCCCCCATGCCAAAACCAATCTCAAGCGTCAC                       >  SRR4302543.4707839/1‑94 (MQ=60)

                                                                        AATGCACTTCAATGCCGAGGAGGTCCTGCTCAGGGCGATCTTTAGCCATTGCCACCAGCGACGCCCCCATGCCAAAACCAATCTCAAGCGTCAC                       <  SRR4302543.3935817/94‑1 (MQ=60)

                                                                        AATGCACTTCAATGCCGAGGAGGTCCTGCTCAGGGCGATCTTTAGCCATTGCCACCAGCGACGCCCCCATGCCAAAACCAATCTCAAGCGTCAC                       >  SRR4302543.5632469/1‑94 (MQ=60)

                                                                         ATGCACTTCAATGCCGAGGAGGTCCTGCTCAGGGCGATCTTTAGCCATTGCCACCAGCGACGCCCCCATGCCAAAACCAATCTCAAGCGTCACC                      >  SRR4302543.2365806/1‑94 (MQ=60)

                                                                         ATGCACTTCAATGCCGAGGAGGTCCTGCTCAGGGCGATCTTTAGCCATTGCCACCAGCGACGCCCCCATGCCAAAACCAATCTCAAGCGTCACC                      >  SRR4302543.4001956/1‑94 (MQ=60)

                                                                         ATGCACTTCAATGCCGAGGAGGTCCTGCTCAGGGCGATCTTTAGCCATTGCCACCAGCGACGCCCCCATGCCAAAACCAATCTCAAGCGTCACC                      <  SRR4302543.819962/94‑1 (MQ=60)

                                                                         ATGCACTTCAATGCCGAGGAGGTCCTGCTCAGGGCGATCTTTAGCCATTGCCACCAGCGACGCCCCCATGCCAAAACCAATCTCAAGCGTCACC                      <  SRR4302543.2233619/94‑1 (MQ=60)

                                                                          TGCACTTCAATGCCGAGGAGGTCCTGCTCAGGGCGATCTTTAGCCATTGCCACCAGCGACGCCCCCATGCCAAAACCAATCTCAAGCGTCACCG                     <  SRR4302543.824699/94‑1 (MQ=60)

                                                                           GCACTTCAATGCCGAGGAGGTCCTGCTCAGGGCGATCTTTAGCCATTGCCACCAGCGACGCCCCCATGCCAAAACCAATCTCAAGCGTCACCGG                    >  SRR4302543.3898222/1‑94 (MQ=60)

                                                                            CACTTCAATGCCGAGGAGGTCCTGCTCAGGGCGATCTTTAGCCATTGCCACCAGCGACGCCCCCATGCCAAAACCAATCTCAAGCGTCACCGGC                   >  SRR4302543.6058146/1‑94 (MQ=60)

                                                                            CACTTCAATGCCGAGGAGGTCCTGCTCAGGGCGATCTTTAGCCATTGCCACCAGCGACGCCCCCATGCCAAAACCAATCTCAAGCGTCACCGGC                   >  SRR4302543.6469180/1‑94 (MQ=60)

                                                                            CACTTCAATGCCGAGGAGGTCCTGCTCAGGGCGATCTTTAGCCATTGCCACCAGCGACGCCCCCATGCCAAAACCAATCTCAAGCGTCACCGGC                   <  SRR4302543.5210208/94‑1 (MQ=60)

                                                                            CACTTCAATGCCGAGGAGGTCCTGCTCAGGGCGATCTTTAGCCATTGCCACCAGCGACGCACCCATGCCAAAACCAATCTCAAGCGTCACCGGC                   >  SRR4302543.7723875/1‑94 (MQ=60)

                                                                             ACTTCAATGCCGAGGAGGTCCTGCTCAGGGCGATCTTTAGCCATTGCCACCAGCGACGCCCCCATGCCAACACCAATCTCAAGCGTCACCGGCG                  >  SRR4302543.1291017/1‑94 (MQ=60)

                                                                             ACTTCAATGCCGAGGAGGTCCTGCTCAGGGCGATCTTTAGCCATTGCCACCAGCGACGCCCCCATGCCAAAACCAATCTCAAGCGTCACCGGCG                  >  SRR4302543.627403/1‑94 (MQ=60)

                                                                              CTTCAATGCCGAGGAGGTCCTGCTCAGGGCGATCTTTAGCCATTGCCACCAGCGACGCCCCCATGCCAAAACCAATCTCAAGCGTCACCGGCGC                 >  SRR4302543.1949563/1‑94 (MQ=60)

                                                                              CTTCAATGCCGAGGAGGTCCTGCTCAGGGCGATCTTTAGCCATTGCCACCAGCGACGCCCCCATGCCAAAACCAATCTCAAGCGTCACCGGCGC                 >  SRR4302543.1483943/1‑94 (MQ=60)

                                                                               TTCAATGCCGAGGAGGTCCTGCTCAGGGCGATCTTTAGCCATTGCCACCAGCGACGCCCCCATGCCAAAACCAATCTCAAGCGTCACCGGCGCT                <  SRR4302543.6945134/94‑1 (MQ=60)

                                                                                  AATGCCGAGGAGGTCCTGCTCAGGGCGATCTTTAGCCATTGCCACCAGCGACGCCCCCATGCCAAAACCAATCTCAAGCGTCACCGCGGCTTCA             >  SRR4302543.4573165/1‑94 (MQ=60)

                                                                                   ATGCCGAGGAGGTCCTGCTCAGGGCGATCTTTAGCCATTGCCACCAGCGACGCCCCCATGCCAAAACCAATCTCAAGCGTCACCGGCGCTTCAC            <  SRR4302543.4556701/94‑1 (MQ=60)

                                                                                    TGCCGAGGAGGTCCTGCTCAGGGCGATCTTTAGCCATTGCCACCAGCGACGCCCCCATGCCAAAACCAATCTCAAGCGTCACCGGCGCTTCACG           >  SRR4302543.6953398/1‑94 (MQ=60)

                                                                                     GCCGAGGAGGTCCTGCTCAGGGCGATCTTTAGCCATTGCCACCAGCGACGCCCCCATGCCAAAACCAATCTCAAGCGTCACCGGCGCTTCACGG          <  SRR4302543.2752195/94‑1 (MQ=60)

                                                                                        GAGGAGGTCCTGCTCAGGGCGATCTTTAGCCATTGCCACCAGCGACGCCCCCATGCCAAAACCAATCTCAAGCGTCACCGGCGCTTCACGGCCA       >  SRR4302543.132252/1‑94 (MQ=60)

                                                                                        GAGGAGGTCCTGCTCAGGGCGATCTTTAGCCATTGCCACCAGCGACGCCCCCATGCCAAAACCAATCTCAAGCGTCACCGGCGCTTCACGGCCA       >  SRR4302543.1638867/1‑94 (MQ=60)

                                                                                        GAGGAGGTCCTGCTCAGGGCGATCTTTAGCCATTGCCACCAGCGACGCCCCCATGCCAAAACCAATCTCAAGCGTCACCGGCGCTTCACGGCCA       >  SRR4302543.1655824/1‑94 (MQ=60)

                                                                                         AGGAGGTCCTGCTCAGGGCGATCTTTAGCCATTGCCACCAGCGACGCCCCCATGCCAAAACCAATCTCAAGCGTCACCGGCGCTTCACGGCCAA      >  SRR4302543.1487836/1‑94 (MQ=60)

                                                                                          GGAGGTCCTGCTCAGGGCGATCTTTAGCCATTGCCACCAGCGACGCCCCCATGCCAAAACCAATCTCAAGCGTCACCGGCGCTTCACGGCCAAA     >  SRR4302543.5568634/1‑94 (MQ=60)

                                                                                          GGAGGTCCTGCTCAGGGCGATCTTTAGCCATTGCCACCAGCGACGCCCCCATGCCAAAACCAATCTCAAGCGTCACCGGCGCTTCACGGCCAAA     >  SRR4302543.1646945/1‑94 (MQ=60)

                                                                                           GAGGTCCTGCTCAGGGCGATCTTTAGCATTTGCCACCAGCGACGCCCCCATGCCAAAACCAATCTCAAGCGTCACCGGCGCTTCACGGCCAAAA    >  SRR4302543.395315/1‑94 (MQ=60)

                                                                                             GGTCCTGCTCAGGGCGATCTTTAGCCATTGCCACCAGCGACGCCCCCATGCCAAAACCAATCTCAAGCGTCACCGGCGCTTCACGGCCAAAAAG  <  SRR4302543.2057703/94‑1 (MQ=60)

CGTGACACATCACGCGCAGGTTGCTTAAACCTTCTTCATGCGCAGAAGCCAGGCACGCACCAACGCCCGGTGAATGCACTTCAATGCCGAGGAAGTCCTGCTCAGGGCGATCTTTAGCCATTGCCACCAGCGACGCCCCCATGCCAAAACCAATCTCAAGCGTCACCGGCGCTTCACGGCCAAAAAG  >  NC_000913/3100510‑3100696

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 11 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`