Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I1 R1 1696 279.3 15874187 97.8% 15524954 93.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,597,072 T→C D73G (GAC→GGC)  b3460 ← LivJ

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,597,0720TC99.1% 1404.4 / ‑3.7 451D73G (GAC→GGC) b3460LivJ
Reads supporting (aligned to +/- strand):  ref base T (2/2);  new base C (241/205);  total (244/207)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 457 total aligned reads displayed.

GAAGAACAGAGGTGACCAATCACATATTTAATGCCGTCGTTAACGACTTTGTTCGCCACCGCAACCGCCTGTTTCGGGTCACAGGCATCGTCATATTTTACGATTTGCAGTTTGTTGCCTTTAATGCCGCCTTTAGCGTTGATATCCGCAACCGCCTGCTCTGCGCCGGTAAACTCCTGG  >  NC_000913/3596982‑3597161
                                                                                          |                                                                                         
 aagaaCAGAGGTGACCAATCACATATTTAATGCCGTCGTTAACGACTTTGTTCGCCACCGCAACCGCCTGTTTCGGGTCACAGGCATCGCCat                                                                                        <  2:5989996/93‑1 (MQ=255)
  agaaCAGAGGTGACCAATCACATATTTAATGCCGTCGTTAACGACTTTGTTCGCCACCGCAACCGCCTGTTTCGGGTCACAGGCATCGCCata                                                                                       <  1:4801201/93‑1 (MQ=255)
   gtaCAGAGGTGACCAATCACATATTTAATGCCGTCGTTAACGACTTTGTTCGCCACCGCAACCGCCTGTTTCGGGTCACAGGCATCGCCatat                                                                                      <  1:6145226/91‑1 (MQ=255)
   gaaCAGAGGTGACCAATCACATATTTAATGCCGTCGTTAACGACTTTGTTCGCCACCGCAACCGCCTGTTTCGGGTCACAGGCATCGCCatat                                                                                      >  2:6642345/1‑93 (MQ=255)
    aaCAGAGGTGACCAATCACATATTTAATGCCGTCGTTAACGACTTTGTTCGCCACCGCAACCGCCTGTTTCGGGTCACAGGCATCGCCATAtt                                                                                     >  1:3259637/1‑93 (MQ=255)
    aaCAGAGGTGACCAATCACATATTTAATGCCGTCGTTAACGACTTTGTTCGCCACCGCAACCGCCTGTTTCGGGTCACAGGCATCGCCATAtt                                                                                     >  1:2543658/1‑93 (MQ=255)
     aCAGAGGTGACCAATCACATATTTAATGCCGTCGTTAACGACTTTGTTCGCCACCGCAACCGCCTGTTTCGGGTCACAGGCATCGCCATAttt                                                                                    >  1:245029/1‑93 (MQ=255)
      cAGAGGTGACCAATCACATATTTAATGCCGTCGTTAACGACTTTGTTCGCCACCGCAACCGCCTGTTTCGGGTCACAGGCATCGCCATAtttt                                                                                   <  2:1531644/93‑1 (MQ=255)
       agagGTGACCAATCACATATTTAATGCCGTCGTTAACGACTTTGTTCGCCACCGCAACCGCCTGTTTCGGGTCACAGGCATCGCCATATTTTa                                                                                  >  1:585038/1‑93 (MQ=255)
        gagGTGACCAATCACATATTTAATGCCGTCGTTAACGACTTTGTTCGCCACCGCAACCGCCTGTTTCGGGTCACAGGCATCGCCATATTTTAc                                                                                 >  2:2411517/1‑93 (MQ=255)
        gagGTGACCAATCACATATTTAATGCCGTCGTTAACGACTTTGTTCGCCACCGCAACCGCCTGTTTCGGGTCACAGGCATCGCCATATTTTAc                                                                                 >  2:2997330/1‑93 (MQ=255)
        gagGTGACCAATCACATATTTAATGCCGTCGTTAACGACTTTGTTCGCCACCGCAACCGCCTGTTTCGGGTCACAGGCATCGCCATATTTTAc                                                                                 >  2:6446804/1‑93 (MQ=255)
         agGTGACCAATCACATATTTAATGCCGTCGTTAACGACTTTGTGCGCCACCGCACCCGCCTGTTTCGGGTCACAGGCATCGCCATATTTTACg                                                                                <  1:186743/93‑1 (MQ=255)
         agGTGACCAATCACATATTTAATGCCGTCGCTAACGACTTTGTTCGCCACCGCAACCGCCCGCTTCGGGTCACAGGCATCGCCATATTTTACg                                                                                >  2:4866903/1‑93 (MQ=25)
          ggggACCAATCACATATTTAATGCCGTCGTTAACGACTTTGTTCGCCACGGCAACCGCCAGTTTCGGGTCACAGGGATCGCATTATTTTACgt                                                                               >  2:1760568/4‑92 (MQ=255)
          ggTGACCAATCACATATTTAATGCCGTCGTTAACGACTTTGTTCGCCACCGCAACCGCCTGTTTCGGGTCACAGGCATCGCCATATTTTACgt                                                                               >  1:5091401/1‑92 (MQ=255)
           gTGACCAATCACATATTTAATGCCGTCGTTAACGACTTTGTTCGCCACCGCAACCGCCTGTTTCGGGTCACAGGCATCGCCATATTTTACGAt                                                                              <  1:637245/93‑1 (MQ=255)
              aCCAATCACATATTTAATGCCGTCGTTAACGACTTTGTTCGCCACCGCAACCGCCTGTTTCGGGTCACAGGCATCGCCATATTTTACGATTTg                                                                           <  1:430641/93‑1 (MQ=255)
                cAATCACATATTTAATGCCGTCGTTAACGACTTTGTTCGCCACCGCAACCGCCTGTTTCGGGTCACAGGCATCGCCATATTTTACGATTTgag                                                                         >  1:2670755/1‑91 (MQ=255)
                cAATCACATATTTAATGCCGTCGTTAACGACTTTGTTCGCCACCGCAACCGCCTGTTTCGGGTCACAGGCATCGCCATATTTTACGATTTGCa                                                                         <  2:3391455/93‑1 (MQ=255)
                cAATCACATATTTAATGCCGTCGTTAACGACTTTGTTCGCCACCGCAACCGCCTGTTTCGGGTCACAGGCATCGCCATATTTTACGATTTGCa                                                                         >  1:3872745/1‑93 (MQ=255)
                cAATCACATATTTAATGCCGTCGTTAACGACTTTGTTCGCCACCGCAACCGCCTGTTTCGGGTCACAGGCATCGCCATATTTTACGATTTGCa                                                                         >  2:2636123/1‑93 (MQ=255)
                cAATCACATATTTAATGCCGTCGTTAACGACTTTGTTCGCCACCGCAACCGCCTGTTTCGGGTCACAGGCATCGCCATATTTTACGATTTGCa                                                                         >  1:2237995/1‑93 (MQ=255)
                 aaTCACATATTTAATGCCGTCGTTAACGACTTTGTTCGCCACCGCAACCGCCTGTTTCGGGTCACAGGCATCGCCATATTTTACGATTTGCAg                                                                        >  2:3581403/1‑93 (MQ=255)
                 aaTCACATATTTAATGCCGTCGTTAACGACTTTGTTCGCCACCGCAACCGCCTGTTTCGGGTCACAGGAATCGCCATATTTTACGATTTGCAg                                                                        >  1:4545771/1‑93 (MQ=255)
                     acaTATTTAATGCCGTCGTTAACGACTTTGTTCGCCACCGCAACCGCCTGTTTCGGGTCACAGGCATCGCCATATTTTACGATTTGCAGTttg                                                                    >  2:4766348/1‑93 (MQ=255)
                      caTATTTAATGCCGTCGTTAACGACTTTGTTCGCCACCGCAACCGCCTGTTTCGGGTCACAGGCATCGCCATATTTTACGATTTGCAGTttgt                                                                   >  1:120772/1‑93 (MQ=255)
                       atatTTAATGCCGTCGTTAACGACTTTGTTCGCCACCGCAACCGCCTGTTTCGGGTCACAGGCATCGCCATATTTTACGATTTGCAGTttgtt                                                                  <  2:5252093/93‑1 (MQ=255)
                        tatTTAATGCCGTCGTTAACGACTTTGTTCGCCACCGCAACCGCCTGTTTCGGGTCACAGGCATCGCCATATTTTACGATTTGCGGTttgttg                                                                 >  2:7624039/1‑93 (MQ=255)
                        tatTTAATGCCGTCGTTAACGACTTTGTTCGCCACCGCAACCGCCTGTTTCGGGTCACAGGCATCGCCATATTTTACGATTTGCAGTttgttg                                                                 >  2:896030/1‑93 (MQ=255)
                        tatTTAATGCCGTCGTTAACGACTTTGTTCGCCACCGCAACCGCCTGTTTCGGGTCACAGGCATCGCCATATTTTACGATTTGCAGTttgttg                                                                 >  2:5745236/1‑93 (MQ=255)
                        tatTTAATGCCGTCGTTAACGACTTTGTTCGCCACCGCAACCGCCTGTTTCGGGTCACAGGCATCGCCATATTTTACGATTTGCAGTttgttg                                                                 >  2:6126547/1‑93 (MQ=255)
                         atatAATGCCGTCGTTAACGACTTTGTTCGCCACCGCAACCGCCTGTTTCGGGTCACAGGCATCGCCATATTTTACGATTTGCAGTTTGTTGc                                                                <  2:4565662/90‑1 (MQ=255)
                         atTTAATGCCGTCGTTAACGACTTTGTTCGCCACCGCAACCGCCTGTTTCGGGTCACAGGCATCGCCATATTTTACGATTTGCAGTTTGTTGc                                                                >  1:5993813/1‑93 (MQ=255)
                         atTTAATGCCGTCGTTAACGACTTTGTTCGCCACCGCAACCGCCTGTTTCGGGTCACAGGCATCGCCATATTTTACGATTTGCAGTTTGTTGc                                                                <  2:6834457/93‑1 (MQ=255)
                          tttATTGCCGTCGTTCACGTCTTTGTTCGCCACCGCAACCGCCTGTTTCGGGTCACAGGCATCGCCATATTTTACGCTTTGCAGTTTGTTGcc                                                               <  2:7027449/93‑1 (MQ=255)
                          tttAATGCCGTCGTTAACGACTTTGTTCGCCACCGCAACCGCCTGTTTCGGGTCACAGGCATCGCCATATTTTACGATTTGCAGTTTGTTGct                                                               >  1:4873280/1‑92 (MQ=255)
                          tttAATGCCGTCGTTAACGACTTTGTTCGCCACCGCAACCGCCTGTTTCGGGTCACAGGCATCGCCATATTTTACGATTTGCAGTTTGTTGcc                                                               <  1:5355598/93‑1 (MQ=255)
                           ttACTGCCGTCGTTAACGACTTTGTTCGCCACCGCAACCGCCTGTTTCGGGTCACAGGCATCGCCATATTTTACGATTTGCAGTTTGTTGCCt                                                              >  2:5542545/1‑93 (MQ=255)
                           ttAATGCCGTCGTTAACGACTTTGTTCGCCACCGCAACCGCCTGTTTCGGGTCACAGGCATCGCCATATTTTACGATTTGCAGTTTGTTGCCt                                                              <  1:1662237/93‑1 (MQ=255)
                           ttAATGCCGTCGTTAACGACTTTGTTCGCCACCGCAACCGCCTGTTTCGGGTCACAGGCATCGCCATATTTTACGATTTGCAGTTTGTTGCCt                                                              <  1:7096484/93‑1 (MQ=255)
                            tAATGCCGTCGTTAACGACTTTGTTCGCCACCGCAACCGCCTGTTTCGGGTCACAGGCATCGCCATATTTTACGATTTGCAGTTTGTTGCCtt                                                             <  1:2301775/93‑1 (MQ=255)
                              aTGCCGTCGTTAACGACTTTGTTCGCCACCGCAACCGCCTGTTTCGGGTCACAGGCATCGCCATATTTTACGATTTGCAGTTTGTTGCCTTTa                                                           >  2:1661223/1‑93 (MQ=255)
                              aTGCCGTCGTTAACGACTTTGTTCGCCACCGCAACCGCCTGTTTCGGGTCACAGGCATCGCCATATTTTACGATTTGCAGTTTGTTGCCTTTa                                                           >  1:771241/1‑93 (MQ=255)
                                  cgtcgtTAACGACTTTGTTCGCCACCGCAACCGCCTGTTTCGGGTCACAGGCATCGCCATATTTTACGATTTGCAGTTTGTTGCCTTTAATgc                                                       >  2:71800/1‑93 (MQ=255)
                                  cgtcgtTAACGACTTTGTTCGCCACCGCAACCGCCTGTTTCGGGTCACAGGCATCGCCATATTTTACGATTTGCAGTTTGTTGCCTTTAATgc                                                       <  1:854244/93‑1 (MQ=255)
                                  cgtcgtTAACGACTTTGTTCGCCACCGCAACCGCCTGTTTCGGGTCACAGGCATCGCCATATTTTACGATTTGCAGTTTGTTGCCTTTAATgc                                                       >  2:2807205/1‑93 (MQ=255)
                                  cgtcgtTAACGACTTTGTTCGCCACCGCAACCGCCTGTTTCGGGTCACAGGCATCGCCATATTTTACGATTTGCAGTTTGTTGCCTTTAATgc                                                       <  1:5310665/93‑1 (MQ=255)
                                  cgccgtTAACGACTTTGTTCGCCACCGCAACCGCCTGTTTCGGGTCACAGTCATCGCCATATTTTACGATCTGCAGTTTGTTGCCTTTAATgc                                                       <  1:1330000/90‑1 (MQ=255)
                                   gtcgtTAACGACTTTGTTCGCCACCGCAACCGCCTGTTTCGGGTCACAGGCATCGCCATATTTTACGATTTGCAGTTTGTTGCCTTTAATgcc                                                      >  2:4054001/1‑93 (MQ=255)
                                    tcgtTCGCGCCTTTGTTCGCCCCCGCCGCCGCCTGTTTCGGGTCCCGGGCCTCGCCATTTTTTCCGCTTTGCCGTTTGTTGCCTTTCCTgccg                                                     <  2:6037226/93‑1 (MQ=255)
                                    tcgtTAACGACTTTGTTCGCCACCGCACCCGCCTGTTTCGGGTCACAGGCATCGCCATATTTTACGATTTGCCGTTTGTTGCCTTTAATgacg                                                     >  1:3789461/1‑93 (MQ=255)
                                      gtTAACGACTTTGTTCGCCACCGCAACCGCCTGTTTCGGGTCACAGGCATCGCCATATTTTACGATTTGCAGTTTGTTGCCTTTAATgccgcc                                                   >  2:4464706/1‑93 (MQ=255)
                                       ttAACGACTTTGTTCGCCACCGCAACCGCCTGTTTCGGGTCACAGGCATCGCCATATTTTACGATTTGCAGTTTGTTGCCTTTAATGCCGCCt                                                  >  2:3878988/1‑93 (MQ=255)
                                       ttAACGACTTTGTTCGCCACCGCAACCGCCTGTTTCGGGTCACAGGCATCGCCATATTTTACGATTTGCAGTTTGTTGCCTTTAATGCCGCCt                                                  >  2:1386688/1‑93 (MQ=255)
                                        tAACGACTTTGTTCGCCACCGCAACCGCCTGTTTCGGGTCACAGGCATCGCCATATTTTACGATTTGCAGTTTGTTGCCTTTAATGCCGCCtt                                                 <  2:1142801/93‑1 (MQ=255)
                                        tAACGACTTTGTTCGCCACCGCAACCGCCTGTTTCGGGTCACAGGCATCGCCATATTTTACGATTTGCAGATTGTTGACTTTAATGCCGCCtt                                                 >  2:5161063/1‑93 (MQ=255)
                                         aaCGACTTTGTTCGCCACCGCAACCGCCTGTTTCGGGTCACAGGCATCGCCATATTTTACGATTTGCAGTTTGTTGCCTTTAATGCCGCCttt                                                <  2:7756469/93‑1 (MQ=255)
                                          aCGCCTTTGTTCGCCACCGCAACCGCCTGTTTCGGGTCACAGGCATCGCCATATTTTACGATTTGCAGTTTGTTGCCTTTAATGCCGCCTTTa                                               <  2:2237378/93‑1 (MQ=255)
                                          aCGACTTTGTTCGCCACCGCAACCGCCTGTTTCGGGTCACAGGCATCGCCATATTTTACGATTTGCAGTTTGTTGCCTTTAATGCCGCCTTTa                                               <  1:2107957/93‑1 (MQ=255)
                                            gACTTTGTTCGCCACCGCAACCGCCTGTTTCGGGTCACAGGCATCGCCATATTTTACGATTTGCAGTTTGTTGCCTTTAATGCCGCCTTTAGc                                             >  1:2899815/1‑93 (MQ=255)
                                             aCTTTGTTCGCCACCGCAACCGCCTGTTTCGGGTCACAGGCATCGCCATATTTTACGATTTGCAGTTTGTTGCCTTTAATGCCGCCTTTAGCg                                            >  1:5246657/1‑93 (MQ=255)
                                             aCTTTGTTCGCCACCGCAACCGCCTGTTTCGGGTCACAGGCATCGCCATATTTTACGATTTGCAGTTTGTTGCCTTTAATGCCGCCTTTAGCg                                            >  2:7406969/1‑93 (MQ=255)
                                             aCTTTGTTCGACACCGCAACCGCCTGTTTCGGGTCACAGGCATCGCCATATTTTACGATTTGCAGTTTGTTGCCTTTAATGCCGCCTTTAGct                                            >  2:2070287/1‑92 (MQ=255)
                                              cTTTGTTCGCCACCGCAACCGCCTGTTTCGGGTCACAGGCATCGCCATATTTTACGATTTGCAGTTTGTTGCCTTTAATGCCGCCTTTAGCGt                                           >  1:3672897/1‑93 (MQ=255)
                                               tttGTTCGCCACCGCAACCGCCTGTTTCGGGTCACAGGCATCGCCATATTTTACGATTTGCAGTTTGTTGCCTTTAATGCCGCCTTTAGCGtt                                          >  2:1311274/1‑93 (MQ=255)
                                               tttGTTCGCCACCGCAACCGCCTGTTTCGGGTCACAGGCATCGCCATATTTTACGATTTGCAGTTTGTTGCCTTTAATGCCGCCTTTAGCGtt                                          <  1:310364/93‑1 (MQ=255)
                                                ttGTTCGCCACCGCAACCGCCTGTTTCGGGTCACAGGCATCGCCATATTTTACGATTTGCAGTTTGTTGCCTTTAATGCCGCCTTTAGCGTTg                                         <  2:4280356/93‑1 (MQ=255)
                                                   ttCGCCACCGCAACCGCCTGTTTCGGGTCACAGGCATCGCCATATTTTACGATTTGCAGTTTGTTGCCTTTAATGCCGCCTTTAGCGTTGata                                      >  1:3398126/1‑93 (MQ=255)
                                                     cGCCACCGCAACCGCCTGTTTCGGGTCACAGGCATCGCCATATTTTACGATTTGCAGTTTGTTGCCTTTAATGCCGCCTTTAGCGTTGATATc                                    <  2:7298689/93‑1 (MQ=255)
                                                      gCCACCGCAACCGCCTGTTTCGGGTCACAGGCATCGCCATATTTTACGATTTGCAGTTTGTTGCCTTTAATGCCGCCTTTAGCGTTGATATcc                                   >  1:6638949/1‑93 (MQ=255)
                                                        cACCGCAACCGCCTGTTTCGGGTCACAGGCATCGCCATATTTTACGATTTGCAGTTTGTTGCCTTTAATGCCGCCTTTAGCGTTGATATCCGc                                 >  1:5713250/1‑93 (MQ=255)
                                                        cACCGCAACCGCCTGTTTCGGGTCACAGGCATCGCCATATTTTACGATTTGCAGTTTGTTGCCTTTAATGCCGCCTTTAGCGTTGATATCCGc                                 >  2:3973810/1‑93 (MQ=255)
                                                          ccGCAACCGCCTGTTTCGGGTCACAGGCATCGCCATATTTTACGATTTGCAGTTTGTTGCCTTTAATGCCGCCTTTAGCGTTGATATCCGCaa                               <  1:5542546/93‑1 (MQ=255)
                                                             cAACCGCCTGTTTCGGGTCACAGGCATCGCCATATTTTACGATTTGCAGTTTGTTGCCTTTAATGCCGCCTTTAGCGTTGATATCCGCAACCg                            >  2:1924098/1‑93 (MQ=255)
                                                              aaCCGCCTGTTTCGGGTCACAGGCATCGCCATATTTTACGATTTGCAGTTTGTTGCCTTTAATGCCGCCTTTAGCGTTGATATCCGCAACCGc                           >  1:6226653/1‑93 (MQ=255)
                                                              aaCCGCCTGTTTCGGGTCACAGGCATCGCCATATTTTACGATTTGCAGTTTGTTGCCTTTAATGCCGCCGTTAGCGTTGATATCCGCAACCGc                           >  2:4344492/1‑93 (MQ=255)
                                                               aCCGCCTGTTTCGGGTCACAGGCATCGCCATATTTTACGATTTGCAGTTTGTTGCCTTTAATGCCGCCTTTAGCGTTGATATCCGCAACCGcc                          >  1:3537669/1‑93 (MQ=255)
                                                               aCCGCCTGTTTCGGGTCACAGGCATCGCCATATTTTACGATTTGCAGTTTGTTGCCTTTAATGCCGCCTTTAGCGTTGATATCCGCAACCGcc                          >  1:1969869/1‑93 (MQ=255)
                                                                ccGCCTGTTTCGGGTCACAGGCATCGCCATATTTTACGATTTGCAGTTTGTTGCCTTTAATGCCGCCTTTAGCGTTGATATCCGCAACCGCCt                         <  2:3745431/93‑1 (MQ=255)
                                                                 cGCCTGTTTCGGGTCACAGGCATCGCCATATTTTACGATTTGCAGTTTGTTGCCTTTAATGCCGCCTTTAGCGTTGATATCCGCAACCGCCTg                        >  1:6873650/1‑93 (MQ=255)
                                                                  gCCTGTTTCGGGTCACAGGCATCGCCATATTTTACGATTTGCAGTTTGTTGCCTTTAATGCCGCCTTTAGCGTTGATATCCGCAACCGCCTGc                       >  1:7347258/1‑93 (MQ=255)
                                                                    cTGTTTCGGGTGACAGGCATCGACATATTTTACGATTTGCAGTTTGTTGCCTTTAATGCTGCCTTTAGCCTTGATATCCGCGACCGCCTGctc                     >  2:5405001/1‑93 (MQ=255)
                                                                    cTGTTTCGGGTCACAGGCATCGCCATATTTTACGATTTGCAGTTTGTTGCCTTTAATGCCGCCTTTAGCGTTGATATCCGCAACCGCCTGctc                     >  1:6544963/1‑93 (MQ=255)
                                                                    cTGTTTCGGGTCACAGGCATCGCCATATTTTACGATTTGCAGTTTGTTGCCTTTAATGCCGCCTTTAGCGTTGATATCCGCAACCGCCTGctc                     <  2:4671079/93‑1 (MQ=255)
                                                                     tGTTTCGGGTCACAGGCATCGCCATATTTTACGATTTGCAGTTTGTTGCCTTTAATGCCGCCTTTAGCGTTGATATCCGCAACCGCCTGctct                    >  1:4677680/1‑93 (MQ=255)
                                                                     tGTTTCGGGTCACAGGCATCGCCATATTTTACGATTTGCAGTTTGTTGCCTTTAATGCCGCCTTTAGCGTTGATATCCGCAACCGCCTGctct                    <  2:7838754/93‑1 (MQ=255)
                                                                     tGTTTCGGGTCACAGGCATCGCCATATTTTACGATTTGCAGTTTGTTGCCTTTAATGCCGCCTTTAGCGTTGATATCCGCAACCGCCTGctct                    <  1:7879588/93‑1 (MQ=255)
                                                                          cGGGTCACAGGCATCGCCATATTTTACGATTTGCAGTTTGTTGCCTTTAATGCCGCCTTTAGCGTTGATATCCGCATCCGCCTGCTCTGCGcc               <  1:17693/93‑1 (MQ=255)
                                                                               cacaGGCATCGCCATATTTTACGATTTGCAGTTTGTTGCCTTTAATGCCGCCTTTAGCGTTGATATCCGCAACCGCCTGCTCTGCGCCGGTaa          <  1:4951379/93‑1 (MQ=255)
                                                                                    gCATCGCCATATTTTACGATTTGCAGTTTGTTGCCTTTAATGCCGCCTTTAGCGTTGATATCCGCAACCGCCTGCTCTGCGCCGGTAAACTcc     <  2:1012084/93‑1 (MQ=255)
                                                                                    gCATCGCCATATTTTACGATTTGCAGTTTGTTGCCTTTAATGCCGCCTTTAGCGTTGATATCCGCAACCGCCTGCTCTGCGCCGGTAAACTcc     <  2:4978036/93‑1 (MQ=255)
                                                                                     cATCGCCATATTTTACGATTTGCAGTTTGTTGCCTTTAATGCCGCCTTTAGCGTTGATATCCGCAACCGCCTGCTCTGCGCCGGTAAACTCCt    >  1:3985694/1‑93 (MQ=255)
                                                                                     cATCGCCATATTTTACGATTTGCAGTTTGTTGCCTTTAATGCCGCCTTTAGCGTTGATATCCGCAACCGCCTGCTCTGCGCCGGTAAACTCCt    >  1:5757813/1‑93 (MQ=255)
                                                                                     cATCGCCATATTTTACGATTTGCAGTTTGTTGCCTTTAATGCCGCCTTTAGCGTTGATATCCGCAACCGCCTGCTCTGCGCCGGTAAACTCCt    <  2:3108065/93‑1 (MQ=255)
                                                                                       tCGCCATATTTTACGATTTGCAGTTTGTTGCCTTTAATGCCGCCTTTAGCGTTGATATCCGCAACCGCCTGCTCTGCGCCGGTAAACTCCTgg  >  1:7428740/1‑93 (MQ=255)
                                                                                       tCGCCATATTTTACGATTTGCAGTTTGTTGCCTTTAATGCCGCCTTTAGCGTTGATATCCGCAACCGCCTGCTCTGCGCCGGTAAACTCCTgg  <  2:2734165/93‑1 (MQ=255)
                                                                                       tCGCCATATTTTACGATTTGCAGTTTGTTGCCTTTAATGCCGCCTTTAGCGTTGATATCCGCAACCGCCTGCTCTGCGCCGGTAAACTCCTgg  >  2:3363923/1‑93 (MQ=255)
                                                                                       tCGCCATATTTTACGATTTGCAGTTTGTTGCCTTTAATGCCGCCTTTAGCGTTGATATCCGCAACCGCCTGCTCTGCGCCGGTAAACTCCTgg  >  1:1000657/1‑93 (MQ=255)
                                                                                       tCGCCATATTTTACGATTTGCAGCTTGTTGCCTTTAATGCCGCCTTTAGCGTTGATATCCGCAACCGCCTGCTCTGCGCCGGTAAACTCCTgg  >  2:6315642/1‑93 (MQ=255)
                                                                                          |                                                                                         
GAAGAACAGAGGTGACCAATCACATATTTAATGCCGTCGTTAACGACTTTGTTCGCCACCGCAACCGCCTGTTTCGGGTCACAGGCATCGTCATATTTTACGATTTGCAGTTTGTTGCCTTTAATGCCGCCTTTAGCGTTGATATCCGCAACCGCCTGCTCTGCGCCGGTAAACTCCTGG  >  NC_000913/3596982‑3597161

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

BRESEQ :: bam2aln output Only 200 of 236 total aligned reads displayed.
GATGAAGAACAGAGGTGACCAATCACATATTTAATGCCGTCGTTAACGACTTTGTTCGCCACCGCAACCGCCTGTTTCGGGTCACAGGCATCGTCATATTTTACGATTTGCAGTTTGTTGCCTTTAATGCCGCCTTTAGCGTTGATATCCGCAACCGCCTGCTCTGCGCCGGTAAACTCCTGGTCAC  >  NC_000913/3596979‑3597165
                                                                                             |                                                                                             
GATGAAGAACAGAGGTGACCAATCACATATTTAATGCCGTCGTTAACGACTTTGTTCGCCACCGCAACCGCCTGTTTCGGGTCACAGGCATCGC                                                                                               >  SRR4302543.4026753/1‑94 (MQ=60)
 ATGAAGAACAGAGGTGACCAATCACATATTTAATGCCGTCGTTAACGACTTTGTTCGCCACCGCAACCGCCTGTTTCGGGTCACAGGCATCGCC                                                                                              >  SRR4302543.1682610/1‑94 (MQ=60)
  TGAAGAACAGAGGTGACCAATCACATATTTAATGCCGTCGTTAACGACTTTGTTCGCCACCGCAACCGCCTGTTTCGGGTCACAGGCATCGCCA                                                                                             <  SRR4302543.1824751/94‑1 (MQ=60)
     AGAACAGAGGTGACCAATCACATATTTAATGCCGTCGTTAACGACTTTGTTCGCCACCGCAACCGCCTGTTTCGGGTCACAGGCATCGCCATAT                                                                                          <  SRR4302543.2456510/94‑1 (MQ=60)
     AGAACAGAGGTGACCAATCACATATTTAATGCCGTCGTTAACGACTTTGTTCGCCACCGCAACCGCCTGTTTCGGGTCACAGGCATCGCCATAT                                                                                          <  SRR4302543.4845081/94‑1 (MQ=60)
     AGAACAGAGGTGACCAATCACATATTTAATGCCGTCGTTAACGACTTTGTTCGCCACCGCAACCGCCTGTTTCGGGTCACAGGCATCGCCATAT                                                                                          >  SRR4302543.7156897/1‑94 (MQ=60)
      GTACAGAGGTGACCAATCACATATTTAATGCCGTCGTTAACGACTTTGTTCGCCACCGCAACCGCCTGTTTCGGGTCACAGGCATCGCCATATT                                                                                         <  SRR4302543.6203424/94‑1 (MQ=60)
      GAACAGAGGTGACCAATCACATATTTAATGCCGTCGTTAACGACTTTGTTCGCCACCGCAACCGCCTGTTTCGGGTCACAGGCATCGCCATATT                                                                                         >  SRR4302543.2566853/1‑94 (MQ=60)
      GAACAGAGGTGACCAATCACATATTTAATGCCGTCGTTAACGACTTTGTTCGCCACCGCAACCGCCTGTTTCGGGTCACAGGCATCGCCATATT                                                                                         <  SRR4302543.6146849/94‑1 (MQ=60)
      GAACAGAGGTGACCAATCACATATTTAATGCCGTCGTTAACGACTTTGTTCGCCACCGCAACCGCCTGTTTCGGGTCACAGGCATCGCCATATT                                                                                         >  SRR4302543.3289098/1‑94 (MQ=60)
      AAACAGAGGGTACCAATCACATATTTAATGCCGGCGTTAACGACTTTGTTCGCCACCGCAACCGCCTGTTTCGGGTCACAGGCATCGCCATATT                                                                                         <  SRR4302543.6147035/94‑1 (MQ=60)
       AACAGAGGTGACCAATCACATATTTAATGCCGTCGTTAACGACTTTGTTCGCCACCGCAACCGCCTGTTTCGGGTCACAGGCATCGCCATATTT                                                                                        >  SRR4302543.247154/1‑94 (MQ=60)
       AACAGAGGTGACCAATCACATATTTAATGCCGTCGTTAACGACTTTGTTCGCCACCGCAACCGCCTGTTTCGGGTCACAGGCATCGCCATATTT                                                                                        <  SRR4302543.2776411/94‑1 (MQ=60)
       AACAGAGGTGACCAATCACATATTTAATGCCGTCGTTAACGACTTTGTTCGCCACCGCAACCGCCTGTTTCGGGTCACAGGCATCGCCATATTT                                                                                        <  SRR4302543.4131762/94‑1 (MQ=60)
       AACAGAGGTGACCAATCACATATTTAATGCCGTCGTTAACGACTTTGTTCGCCACCGCAACCGCCTGTTTCGGGTCACAGGCATCGCCATATTT                                                                                        >  SRR4302543.6913202/1‑94 (MQ=60)
        ACAGAGGTGACCAATCACATATTTAATGCCGTCGTTAACGACTTTGTTCGCCACCGCAACCGCCTGTTTCGGGTCACAGGCATCGCCATATTTT                                                                                       >  SRR4302543.1702980/1‑94 (MQ=60)
         CAGAGGTGACCAATCACATATTTAATGCCGTCGTTAACGACTTTGTTCGCCACCGCAACCGCCTGTTTCGGGTCACAGGCATCGCCATATTTTA                                                                                      >  SRR4302543.590380/1‑94 (MQ=60)
         CAGAGGTGACCAATCACATATTTAATGCCGTCGTTAACGACTTTGTTCGCCACCGCAACCGCCTGTTTCGGGTCACAGGCATCGCCATATTTTA                                                                                      >  SRR4302543.4369249/1‑94 (MQ=60)
            AGGTGACCAATCACATATTTAATGCCGTCGTTAACGACTTTGTTCGCCACCGCAACCGCCTGTTTCGGGTCACAGGCATCGCCATATTTTACGT                                                                                   >  SRR4302543.5137535/1‑94 (MQ=60)
            AGGTGACCAATCACATATTTAATGCCGTCGTTAACGACTTTGTTCGCCACCGCAACCGCCTGTTTCGGGTCACAGGCATCGCCATATTTTACGA                                                                                   >  SRR4302543.5137534/1‑94 (MQ=60)
            AGGTGACCAATCACATATTTAATGCCGTCGTTAACGACTTTGTTCGCCACCGCAACCGCCTGTTTCGGGTCACAGGCATCGCCATATTTTACGA                                                                                   >  SRR4302543.5362694/1‑94 (MQ=60)
             GGTGACCAATCACATATTTAATGCCGTCGTTAACGACTTTGTTCGCCACCGCAACCGCCTGTTTCGGGTCACAGGCATCGCCATATTTTACGAT                                                                                  <  SRR4302543.4512054/94‑1 (MQ=60)
              GTGACCAATCACATATTTAATGCCGTCGTTAACGACTTTGTTCGCCACCGCAACCGCCTGTTTCGGGTCACAGGCATCGCCATATTTTACGATT                                                                                 <  SRR4302543.643066/94‑1 (MQ=60)
                GACCAATCACATATTTAATGCCGTCGTTAACGACTTTGTTCGCCACCGCAACCGCCTGTTTCGGGTCACAGGCATCGCCATATTTTACGATTTG                                                                               <  SRR4302543.2686395/94‑1 (MQ=60)
                GACCAATCACATATTTAATGCCGTCGTTAACGACTTTGTTCGCCACCGCAACCGCCTGTTTCGGGTCACAGGCATCGCCATATTTTACGATTTG                                                                               <  SRR4302543.3815138/94‑1 (MQ=60)
                 ACCAATCACATATTTAATGCCGTCGTTAACGACTTTGTTCGCCACCGCAACCGCCTGTTTCGGGTCACAGGCATCGCCATATTTTACGATTTGC                                                                              <  SRR4302543.434676/94‑1 (MQ=60)
                  CCAATCACATATTTAATGCCGTCGTTAACGACTTTGTTCGCCACCGCAACCGCCTGTTTCGGGTCACAGGCATCGCCATATTTTACGATTTGag                                                                             >  SRR4302543.2694970/1‑92 (MQ=60)
                  CCAATCACATATTTAATGCCGTCGTTAACGACTTTGTTCGCCACCGCAACCGCCTGTTTCGGGTCACAGGCATCGCCATATTTTACGATTTGCA                                                                             >  SRR4302543.3836933/1‑94 (MQ=60)
                  CCAATCACATATTTAATGCCGTCGTTAACGACTTTGTTCGCCACCGCAACCGCCTGTTTCGGGTCACAGGCATCGCCATATTTTACGATTTGCA                                                                             >  SRR4302543.2258266/1‑94 (MQ=60)
                  CCAATCACATATTTAATGCCGTCGTTAACGACTTTGTTCGCCACCGCAACCGCCTGTTTCGGGTCACAGGCATCGCCATATTTTACGATTTGCA                                                                             >  SRR4302543.3836934/1‑94 (MQ=60)
                  CCAATCACATATTTAATGCCGTCGTTAACGACTTTGTTCGCCACCGCAACCGCCTGTTTCGGGTCACAGGCATCGCCATATTTTACGATTTGCA                                                                             >  SRR4302543.3906938/1‑94 (MQ=60)
                   CAATCACATATTTAATGCCGTCGTTAACGACTTTGTTCGCCACCGCAACCGCCTGTTTCGGGTCACAGGCATCGCCATATTTTACGATTTGCAG                                                                            <  SRR4302543.3096557/94‑1 (MQ=60)
                   CAATCACATATTTAATGCCGTCGTTAACGACTTTGTTCGCCACCGCAACCGCCTGTTTCGGGTCACAGGCATCGCCATATTTTACGATTTGCAG                                                                            >  SRR4302543.6337155/1‑94 (MQ=60)
                   CAATCACATATTTAATGCCGTCGTTAACGACTTTGTTCGCCACCGCAACCGCCTGTTTCGGGTCACAGGCATCGCCATATTTTACGATTTGCAG                                                                            <  SRR4302543.1453630/94‑1 (MQ=60)
                   CAATCACATATTTAATGCCGTCGTTAACGACTTTGTTCGCCACCGCAACCGCCTGTTTCGGGTCACAGGCATCGCCATATTTTACGATTTGCAG                                                                            >  SRR4302543.4587168/1‑94 (MQ=60)
                    AATCACATATTTAATGCCGTCGTTAACGACTTTGTTCGCCACCGCAACCGCCTGTTTCGGGTCACAGGCATCGCCATATTTTACGATTTGCAGT                                                                           <  SRR4302543.4994850/94‑1 (MQ=60)
                    AATCACATATTTAATGCCGTCGTTAACGACTTTGTTCGCCACCGCAACCGCCTGTTTCGGGTCACAGGCATCGCCATATTTTACGATTTGCAGT                                                                           <  SRR4302543.1431221/94‑1 (MQ=60)
                     ATCACATATTTAATGCCGTCGTTAACGACTTTGTTCGCCACCGCAACCGCCTGTTTCGGGTCACAGGCATCGCCATATTTTACGATTTGCAGTT                                                                          >  SRR4302543.4815490/1‑94 (MQ=60)
                      TCACATATTTAATGCCGTCGTTAACGACTTTGTTCGCCACCGCAACCGCCTGTTTCGGGTCACAGGCATCGCCATATTTTACGATTTGCAGTTT                                                                         <  SRR4302543.2756679/94‑1 (MQ=60)
                      TCACATATTTAATGCCGTCGTTAACGACTTTGTTCGCCACCGCAACCGCCTGTTTCGGGTCACAGGCATCGCCATATTTTACGATTTGCAGTTT                                                                         >  SRR4302543.2518279/1‑94 (MQ=60)
                      TCACATATTTAATGCCGTCGTTAACGACTTTGTTCGCCACCGCAACCGCCTGTTTCGGGTCACAGGCATCGCCATAGGTTACGATTTGCAGTTT                                                                         >  SRR4302543.7102395/1‑94 (MQ=60)
                        ACATATTTAATGCCGTCGTTAACGACTTTGTTCGCCACCGCAACCGCCTGTTTCGGGTCACAGGCATCGCCATATTTTACGATTTGCAGTTTGT                                                                       >  SRR4302543.5691141/1‑94 (MQ=60)
                        ACATATTTAATGCCGTCGTTAACGACTTTGTTCGCCACCGCAACCGCCTGTTTCGGGTCACAGGCATCGCCATATTTTACGATTTGCAGTTTGT                                                                       >  SRR4302543.4703715/1‑94 (MQ=60)
                        ACATATTTAATGCCGTCGTTAACGACTTTGTTCGCCACCGCAACCGCCTGTTTCGGGTCACAGGCATCGCCATATTTTACGATTTGCAGTTTGT                                                                       >  SRR4302543.2349791/1‑94 (MQ=60)
                        ACATATTTAATGCCGTCGTTAACGACTTTGTTCGCCACCGCAACCGCCTGTTTCGGGTCACAGGCATCGCCATATTTTACGATTTGCAGTTTGT                                                                       >  SRR4302543.121864/1‑94 (MQ=60)
                         CATATTTAATGCCGTCGTTAACGACTTTGTTCGCCACCGCAACCGCCTGTTTCGGGTCACAGGCATCGCCATATTTTACGATTTGCAGTTTGTT                                                                      >  SRR4302543.1830220/1‑94 (MQ=60)
                          ATATTTAATGCCGTCGTTAACGACTTTGTTCGCCACCGCAACCGCCTGTTTCGGGTCACAGGCATCGCCATATTTTACGATTTGCAGTTTGTTG                                                                     >  SRR4302543.6022729/1‑94 (MQ=60)
                          ATATTTAATGCCGTCGTTAACGACTTTGTTCGCCACCGCAACCGCCTGTTTCGGGTCACAGGCATCGCCATATTTTACGATTTGCAGTTTGTTG                                                                     >  SRR4302543.5435884/1‑94 (MQ=60)
                          ATATTTAATGCCGTCGTTAACGACTTTGTTCGCCACCGCAACCGCCTGTTTCGGGTCACAGGCATCGCCATATTTTACGATTTGCAGTTTGTTG                                                                     >  SRR4302543.2720443/1‑94 (MQ=60)
                          ATATTTAAGGCCGTCGTTAACGACTTTGTTCGCCAACGCAACCGCCTGTTTCGGGTCACAGGCATCGCGATATTTGACGATTTGCAGTTTGTTG                                                                     <  SRR4302543.3654879/94‑1 (MQ=60)
                           TATTTAATGCCGTCGTTAACGACTTTGTTCGCCACCGCAACCGCCTGTTTCGGGTCACAGGCATCGCCATATTTTACGATTTGCAGTTTGTTGC                                                                    >  SRR4302543.181372/1‑94 (MQ=60)
                           TATTTAATGCCGTCGTTAACGACTTTGTTCGCCACCGCAACCGCCTGTTTCGGGTCACAGGCATCGCCATATTTTACGATTTGCAGTTTGTTGC                                                                    >  SRR4302543.6048757/1‑94 (MQ=60)
                            ATTTAATGCCGTCGTTAACGACTTTGTTCGCCACCGCAACCGCCTGTTTCGGGTCACAGGCATCGCCATATTTTACGATTTGCAGTTTGTTGCT                                                                   >  SRR4302543.1931205/1‑94 (MQ=60)
                            ATTTAATGCCGTCGTTAACGACTTTGTTCGCCACCGCAACCGCCTGTTTCGGGTCACAGGCATCGCCATATTTTACGATTTGCAGTTTGTTGCT                                                                   >  SRR4302543.4917702/1‑94 (MQ=60)
                            ATTTAATGCCGTCGTTAACGACTTTGTTCGCCACCGCAACCGCCTGTTTCGGGTCACAGGCATCGCCATATTTTACGATTTGCAGTTTGTTGCC                                                                   >  SRR4302543.5477475/1‑94 (MQ=60)
                             TTTAATGCCGTCGTTAACGACTTTGTTCGCCACCGCAACCGCCTGTTTCGGGTCACAGGCATCGCCATATTTTACGATTTGCAGTTTGTTGCCT                                                                  >  SRR4302543.400953/1‑94 (MQ=60)
                             TTTAATGCCGTCGTTAACGACTTTGTTCGCCACCGCAACCGCCTGTTTCGGGTCACAGGCATCGCCATATTTTACGATTTGCAGTTTGTTGCCT                                                                  >  SRR4302543.1094124/1‑94 (MQ=60)
                             TTTAATGCCGTCGTTAACGACTTTGTTCGCCACCGCAACCGCCTGTTTCGGGTCACAGGCATCGCCATATTTTACGATTTGCAGTTTGTTGCCT                                                                  <  SRR4302543.5404071/94‑1 (MQ=60)
                             TTTAATGCCGTCGTTAACGACTTTGTTCGCCACCGCAACCGCCTGTTTCGGGTCACAGGCATCGCCATATTTTACGATTTGCAGTTTGTTGCCT                                                                  <  SRR4302543.5949439/94‑1 (MQ=60)
                             TTTAATGCCGTCGTTAACGACTTTGTTCGCCACCGCAACCGCCTGTTTCGGGTCACAGGCATCGCCATATTTTACGATTTGCAGTTTGTTGCCT                                                                  <  SRR4302543.1978885/94‑1 (MQ=60)
                             TTTAATGCCGTCGTTAACGACTTTGTTCGCCACCGCAACCGCCTGTTTCGGGTCACAGGCATCGCCATATTTTACGATTTGCAGTTTCTTGCCT                                                                  >  SRR4302543.7482268/1‑94 (MQ=60)
                              TTAATGCCGTCGTTAACGACTTTGTTCGCCACCGCAACCGCCTGTTTCGGGTCACAGGCATCGCCATATTTTACGATTTGCAGTTTGTTGCCTT                                                                 <  SRR4302543.1677126/94‑1 (MQ=60)
                               TAATGCCGTCGTTAACGACTTTGTTCGCCACCGCAACCGCCTGTTTCGGGTCACAGGCATCGCCATATTTTACGATTTGCAGTTTGTTGCCTTT                                                                <  SRR4302543.2322753/94‑1 (MQ=60)
                                AATGCCGTCGTTAACGACTTTGTTCGCCACCGCAACCGCCTGTTTCGGGTCACAGGCATCGCCATATTTTACGATTTGCAGTTTGTTGCCTTTA                                                               >  SRR4302543.5195349/1‑94 (MQ=60)
                                AATGCCGTCGTTAACGACTTTGTTCGCCACCGCAACCGCCTGTTTCGGGTCACAGGCATCGCCATATTTTACGATTTGCAGTTTGTTGCCTTTA                                                               >  SRR4302543.778006/1‑94 (MQ=60)
                                AATGCCGTCGTTAACGACTTTGTTCGCCACCGCAACCGCCTGTTTCGGGTCACAGGCATCGCCATATTTTACGATTTGCAGTTTGTTGCCTTTA                                                               >  SRR4302543.1901193/1‑94 (MQ=60)
                                AATGCCGTCGTTAACGACTTTGTTCGCCACCGCAACCGCCTGTTTCGGGTCACAGGCATCGCCATATTTTACGATTTGCAGTTTGTTGCCTTTA                                                               <  SRR4302543.5396326/94‑1 (MQ=60)
                                AATGCCGTCGTTAACGACTTTGTTCGCCACCGCAACCGCCTGTTTCGGGTCACAGGCATCGCCATATTTTACGATTTGCAGTTTGTTGCCTTTA                                                               >  SRR4302543.3155042/1‑94 (MQ=60)
                                 ATGCCGTCGTTAACGACTTTGTTCGCCACCGCAACGGCCTGTTTCGGGTCACAGGCATCGCCATATTTTACGATTTGCAGTTTGTTGCCTTTAA                                                              <  SRR4302543.4235476/94‑1 (MQ=60)
                                 ATGCCGTCGTTAACGACTTTGTTCGCCACCGCAACCGCCTGTTTCGGGTCACAGGCATCGCCATATTTTACGATTTGCAGTTTGTTGCCTTTAA                                                              <  SRR4302543.5781154/94‑1 (MQ=60)
                                 ATGCCGTCGTTAACGACTTTGTTCGCCACCGCAACCGCCTGTTTCGGGTCACAGGCATCGCCATATTTTACGATTTGCAGTTTGTTGCCTTTAA                                                              <  SRR4302543.5781153/94‑1 (MQ=60)
                                  TGCCGTCGTTAACGACTTTGTTCGCCACCGCAACCGCCTGTTTCGGGTCACAGGCATCGCCATATTTTACGATTTGCAGTTTGTTGCCTTTAAT                                                             <  SRR4302543.5207311/94‑1 (MQ=60)
                                  TGCCGTCGTTAACGACTTTGTTCGCCACCGCAACCGCCTGTTTCGGGTCACAGGCATCGCCATATTTTACGATTTGCAGTTTGTTGCCTTTAAT                                                             <  SRR4302543.1153785/94‑1 (MQ=60)
                                  TGCCGTCGTTAACGACTTTGTTCGCCACCGCAACCGCCTGTTTCGGGTCACAGGCATCGCCATATTTTACGATTTGCAGTTTGTTGCCTTTAAT                                                             <  SRR4302543.3238455/94‑1 (MQ=60)
                                  TGCCGTCGTTAACGACTTTGTTCGCCACCGCAACCGCCTGTTTCGGGTCACAGGCATCGCCATATTTTACGATTTGCAGTTTGTTGCCTTTAAT                                                             <  SRR4302543.2215012/94‑1 (MQ=60)
                                   GCCGTCGTTAACGACTTTGTTCGCCACCGCAACCGCCTGTTTCGGGTCACAGGCATCGCCATATTTTACGATTTGCAGTTTGTTGCCTTTAATG                                                            <  SRR4302543.7523231/94‑1 (MQ=60)
                                   GCCGTCGTTAACGACTTTGTTCGCCACCGCAACCGCCTGTTTCGGGTCACAGGCATCGCCATATTTTACGATTTGCAGTTTGTTGCCTTTAATG                                                            >  SRR4302543.4792723/1‑94 (MQ=60)
                                    CCGTCGTTAACGACTTTGTTCGCCACCGCAACCGCCTGTTTCGGGTCACAGGCATCGCCATATTTTACGATTTGCAGTTTGTTGCCTTTAATAC                                                           >  SRR4302543.2521240/1‑94 (MQ=60)
                                     CGTCGTTAACGACTTTGTTCGCCACCGCAACCGCCTGTTTCGGGTCACAGGCATCGCCATATTTTACGATTTGCAGTTTGTTGCCTTTAATGCC                                                          <  SRR4302543.861841/94‑1 (MQ=60)
                                     CGTCGTTAACGACTTTGTTCGCCACCGCAACCGCCTGTTTCGGGTCACAGGCATCGCCATATTTTACGATTTGCAGTTTGTTGCCTTTAATGCC                                                          >  SRR4302543.5806532/1‑94 (MQ=60)
                                     CGTCGTTAACGACTTTGTTCGCCACCGCAACCGCCTGTTTCGGGTCACAGGCATCGCCATATTTTACGATTTGCAGTTTGTTGCCTTTAATGCC                                                          >  SRR4302543.2686010/1‑94 (MQ=60)
                                     CGTCGTTAACGACTTTGTTCGCCACCGCAACCGCCTGTTTCGGGTCACAGGCATCGCCATATTTTACGATTTGCAGTTTGTTGCCTTTAATGCC                                                          <  SRR4302543.7380717/94‑1 (MQ=60)
                                     CGTCGTTAACGACTTTGTTCGCCACCGCAACCGCCTGTTTCGGGTCACAGGCATCGCCATATTTTACGATTTGCAGTTTGTTGCCTTTAATGCC                                                          >  SRR4302543.3629540/1‑94 (MQ=60)
                                     CGTCGTTAACGACTTTGTTCGCCACCGCAACCGCCTGTTTCGGGTCACAGGCATCGCCATATTTTACGATTTGCAGTTTGTTGCCTTTAATGCC                                                          <  SRR4302543.4867477/94‑1 (MQ=60)
                                     CGCCGTTAACGACTTTGTTCGCCACCGCAACCGCCTGTTTCGGGTCACAGTCATCGCCATATTTTACGATCTGCAGTTTGTTGCCTTTAATGCC                                                          <  SRR4302543.1341857/94‑1 (MQ=60)
                                      GTCGTTAACGACTTTGTTCGCCACCGCACCCGCCTGTTTCGGGTCACAGGCATCGCCATATTTTACGATTTGCCGTTTGTTGCCTTTAATGACG                                                         >  SRR4302543.3822847/1‑94 (MQ=60)
                                      GTCGTTAACGACTTTGTTCGCCACCGCAACCGCCTGTTTCGGGTCACAGGCATCGCCATATTTTACGATTTGCAGTTTGTTGCCTTTAATGCCG                                                         >  SRR4302543.3814499/1‑94 (MQ=60)
                                        CGTTAACGACTTTGTTCGCCACCGCAACCGCCTGTTTCGGGTCACAGGCATCGCCATATTTTACGATTTGCAGTTTGTTGCCTTTAATGCCGCC                                                       <  SRR4302543.6675794/94‑1 (MQ=60)
                                        CGTTAACGACTTTGTTCGCCACCGCAACCGCCTGTTTCGGGTCACAGGCATCGCCATATTTTACGATTTGCAGTTTGTTGCCTTTAATGCCGCC                                                       <  SRR4302543.560614/94‑1 (MQ=60)
                                        CGTTAACGACTTTGTTCGCCACCGCAACCGCCTGTTTCGGGTCACAGGCATCGCCATATTTTACGATTTGCAGTTTGTTGCCTTTAATGCCGCC                                                       <  SRR4302543.1930295/94‑1 (MQ=60)
                                        CGTTAACGACTTTGTTCGCCACCGCAACCGCCTGTTTCGGGTCACAGGCATCGCCATATTTTACGATTTGCAGTTTGTTGCCTTTAATGCCGCC                                                       <  SRR4302543.3293110/94‑1 (MQ=60)
                                         cctaactACTTTGTTCGCCCCCGCAACCGCCTGTTTCGTGTCACAGGCATCGCCATATTTTACGATTTGCAGTTGGTTGCCTTTAATGCCGCCT                                                      <  SRR4302543.3385284/87‑1 (MQ=60)
                                         GTTAACGACTTTGTTCGCCACCGCAACCGCCTGTTTCGGGTCACAGGCATCGCCATATTTTACGATTTGCAGTTTGTTGCCTTTAATGCCGCCT                                                      >  SRR4302543.6469880/1‑94 (MQ=60)
                                         GTTAACGACTTTGTTCGCCACCGCAACCGCCTGTTTCGGGTCACAGGCATCGCCATATTTTACGATTTGCAGTTTGTTGCCTTTAATGCCGCCT                                                      <  SRR4302543.4882117/94‑1 (MQ=60)
                                         GTTAACGACTTTGTTCGCCACCGCAACCGCCTGTTTCGGGTCACAGGCATCGCCATATTTTACGATTTGCAGTTTGTTGCCTTTAATGCCGCCT                                                      >  SRR4302543.3426329/1‑94 (MQ=60)
                                          TTAACGACTTTGTTCGCCACCGCAACCGCCTGTTTCGGGTCACAGGCATCGCCATATTTTACGATTTGCAGTTTGTTGCCTTTAATGCCGCCTT                                                     >  SRR4302543.1220530/1‑94 (MQ=60)
                                           TAACGACTTTGTTCGCCACCGCAACCGCCTGTTTCGGGTCACAGGCATCGCCATATTTTACGATTTGCAGTTTGTTGCCTTTAATGCCGCCTTT                                                    <  SRR4302543.927496/94‑1 (MQ=60)
                                            AACGACTTTGTTCGCCACCGCAACCGCCTGTTTCGGGTCACAGGCATCGCCATATTTTACGATTTGCAGTTTGTTGCCTTTAATGCCGCCTTTA                                                   >  SRR4302543.635463/1‑94 (MQ=60)
                                            AACGACTTTGTTCGCCACCGCAACCGCCTGTTTCGGGTCACAGGCATCGCCATATTTTACGATTTGCAGTTTGTTGCCTTTAATGCCGCCTTTA                                                   >  SRR4302543.2388690/1‑94 (MQ=60)
                                             aggcCTTTGTTCCCCACCGCAACCGCCTGGTTCGGGTAACAGGCATCGCAATATTTTACTATTTGCAGTTTGTTGCCTTTAATGCCGCCTTTAG                                                  <  SRR4302543.6496053/90‑1 (MQ=60)
                                             ACGACTTTGTTCGCCACCGCAACCGCCTGTTTCGGGTCACAGGCATCGCCATATTTTACGATTTGCAGTTTGTTGCCTTTAATGCCGCCTTTAG                                                  <  SRR4302543.5840448/94‑1 (MQ=60)
                                             ACGACTTTGTTCGCCACCGCAACCGCCTGTTTCGGGTCACAGGCATCGCCATATTTTACGATTTGCAGTTTGTTGCCTTTAATGCCGCCTTTAG                                                  <  SRR4302543.204187/94‑1 (MQ=60)
                                             ACGACTTTGTTCGCCACCGCAACCGCCTGTTTCGGGTCACAGGCATCGCCATATTTTACGATTTGCAGTTTGTTGCCTTTAATGCCGCCTTTAG                                                  <  SRR4302543.2126826/94‑1 (MQ=60)
                                             ACGACTTTGTTCGCCACCGCAACCGCCTGTTTCGGGTCACAGGCATCGCCATATTTTACGATTTGCAGTTTGTTGCCTTTAATGCCGCCTTTAG                                                  >  SRR4302543.473741/1‑94 (MQ=60)
                                              CGACTTTGTTCGCCACCGCAACCGCCTGTTTCGGGTCACAGGCATCGCCATATTTTACGATTTGCAGTTTGTTGCCTTTAATGCCGCCTTTAGC                                                 >  SRR4302543.2926180/1‑94 (MQ=60)
                                              CGACTTTGTTCGCCACCGCAACCGCCTGTTTCGGGTCACAGGCATCGCCATATTTTACGATTTGCAGTTTGTTGCCTTTAATGCCGCCTTTAGC                                                 >  SRR4302543.3857564/1‑94 (MQ=60)
                                              CGACTTTGTTCGCCACCGCAACCGCCTGTTTCGGGTCACAGGCATCGCCATATTTTACGATTTGCAGTTTGTTGCCTTTAATGCCGCCTTTAGC                                                 <  SRR4302543.4979281/94‑1 (MQ=60)
                                               GACTTTGTTCGCCACCGCAACCGCCTGTTTCGGGTCACAGGCATCGCCATATTTTACGATTTGCAGTTTGTTGCCTTTAATGCCGCCTTTAGCG                                                >  SRR4302543.5903093/1‑94 (MQ=60)
                                               GACTTTGTTCGCCACCGCAACCGCCTGTTTCGGGTCACAGGCATCGCCATATTTTACGATTTGCAGTTTGTTGCCTTTAATGCCGCCTTTAGCG                                                >  SRR4302543.7795358/1‑94 (MQ=60)
                                               GACTTTGTTCGCCACCGCAACCGCCTGTTTCGGGTCACAGGCATCGCCATATTTTACGATTTGCAGTTTGTTGCCTTTAATGCCGCCTTTAGCG                                                <  SRR4302543.3611983/94‑1 (MQ=60)
                                               GACTTTGTTCGCCACCGCAACCGCCTGTTTCGGGTCACAGGCATCGCCATATTTTACGATTTGCAGTTTGTTGCCTTTAATGCCGCCTTTAGCG                                                <  SRR4302543.25524/94‑1 (MQ=60)
                                               GACTTTGTTCGCCACCGCAACCGCCTGTTTCGGGTCACAGGCATCGCCATATTTTACGATTTGCAGTTTGTTGCCTTTAATGCCGCCTTTAGCG                                                >  SRR4302543.5293957/1‑94 (MQ=60)
                                               GACTTTGTTCGCCACCGCAACCGCCTGTTTCGGGTCACAGGCATCGCCATATTTTACGATTTGCAGTTTGTTGCCTTTAATGCCGCCTTTAGCG                                                >  SRR4302543.4513496/1‑94 (MQ=60)
                                                ACTTTGTTCGCCACCGCAACCGCCTGTTTCGGGTCACAGGCATCGCCATATTTTACGATTTGCAGTTTGTTGCCTTTAATGCCGCCTTTAGCGT                                               >  SRR4302543.3705145/1‑94 (MQ=60)
                                                 CTTTTTTCGCCACCGCAACCTCCTGTTTCGGGTCACAGGCATCGCCATATTTTACGATTTGCAGTTTGTTGCCTTTAATGCCGCCTTTAGCGTT                                              <  SRR4302543.707633/94‑1 (MQ=60)
                                                  TTTGTTCGCCACCGCAACCGCCTGTTTCGGGTCACAGGCATCGCCATATTTTACGATTTGCAGTTTGTTGCCTTTAATGCCGCCTTTAGCGTTG                                             <  SRR4302543.313161/94‑1 (MQ=60)
                                                  TTTGTTCGCCACCGCAACCGCCTGTTTCGGGTCACAGGCATCGCCATATTTTACGATTTGCAGTTTGTTGCCTTTAATGCCGCCTTTAGCGTTG                                             <  SRR4302543.725075/94‑1 (MQ=60)
                                                   TTGTTCGCCACCGCAACCGCCTGTTTCGGGTCACAGGCATCGCCATATTTTACGATTTGCAGTTTGTTGCCTTTAATGCCGCCTTTAGCGTTGA                                            <  SRR4302543.6278922/94‑1 (MQ=60)
                                                   TTGTTCGCCACCGCAACCGCCTGTTTCGGGTCACAGGCATCGCCATATTTTACGATTTGCAGTTTGTTGCCTTTAATGCCGCCTTTAGCGTTGA                                            <  SRR4302543.6278921/94‑1 (MQ=60)
                                                    TGTTCGCCACCGCAACCGCCTGTTTCGGGTCACAGGCATCGCCATATTTTACGATTTGCAGTTTGTTGCCTTTAATGCCGCCTTTAGCGTTGAT                                           <  SRR4302543.2089066/94‑1 (MQ=60)
                                                    TGTTCGCCACCGCAACCGCCTGTTTCGGGTCACAGGCATCGCCATATTTTACGATTTGCAGTTTGTTGCCTTTAATGCCGCCTTTAGCGTTGAT                                           <  SRR4302543.2302268/94‑1 (MQ=60)
                                                    TGTTCGCCACCGCAACCGCCTGTTTCGGGTCACAGGCATCGCCATATTTTACGATTTGCAGTTTGTTGCCTTTAATGCCGCCTTTAGCGTTGAT                                           <  SRR4302543.744024/94‑1 (MQ=60)
                                                    TGTTCGCCACCGCAACCGCCTGTTTCGGGTCACAGGCATCGCCATATTTTACGATTTGCAGTTTGTTGCCTTTAATGCCGCCTTTAGCGTTGAT                                           >  SRR4302543.6655762/1‑94 (MQ=60)
                                                    TGTTCGCCACCGCAACCGCCTGTTTCGGGTCACAGGCATCGCCATATTTTACGATTTGCAGTTTGTTGCCTTTAATGCCGCCTTTAGCGTTGAT                                           >  SRR4302543.2129906/1‑94 (MQ=60)
                                                     GTTCGCCACCGCAACCGCCTGTTTCGGGTCACAGGCATCGCCATATTTTACGATTTGCAGTTTGTTGCCTTTAATGCCGCCTTTAGCGTTGATA                                          >  SRR4302543.3428576/1‑94 (MQ=60)
                                                      TTCGCCACCGCAACCGCCTGTTTCGGGTCACAGGCATCGCCATATTTTACGATTTGCAGTTTGTTGCCTTTAATGCCGCCTTTAGCGTTGATAT                                         <  SRR4302543.2521613/94‑1 (MQ=60)
                                                      TTCGCCACCGCAACCGCCTGTTTCGGGTCACAGGCATCGCCATATTTTACGATTTGCAGTTTGTTGCCTTTAATGCCGCCTTTAGCGTTGATAT                                         <  SRR4302543.5187841/94‑1 (MQ=60)
                                                       TCGCCACCGCAACCGCCTGTTTCGGGTCACAGGCATCGCCATATTTTACGATTTGCAGTTTGTTGCCTTTAATGCCGCCTTTAGCGTTGATATC                                        <  SRR4302543.5686174/94‑1 (MQ=60)
                                                       TCGCCACCGCAACCGCCTGTTTCGGGTCACAGGCATCGCCATATTTTACGATTTGCAGTTTGTTGCCTTTAATGCCGCCTTTAGCGTTGATATC                                        <  SRR4302543.349235/94‑1 (MQ=60)
                                                       TCGCCACCGCAACCGCCTGTTTCGGGTCACAGGCATCGCCATATTTTACGATTTGCAGTTTGTTGCCTTTAATGCCGCCTTTAGCGTTGATATC                                        <  SRR4302543.7252184/94‑1 (MQ=60)
                                                        CGCCACCGCAACCGCCTGTTTCGGGTCACAGGCATCGCCATATTTTACGATTTGCAGTTTGTTGCCTTTAATGCCGCCTTTAGCGTTGATATCC                                       <  SRR4302543.359861/94‑1 (MQ=60)
                                                        CGCCACCGCAACCGCCTGTTTCGGGTCACAGGCATCGCCATATTTTACGATTTGCAGTTTGTTGCCTTTAATGCCGCCTTTAGCGTTGATATCC                                       >  SRR4302543.6701599/1‑94 (MQ=60)
                                                         GCCACCGCAACCGCCTGTTTCGGGTCACAGGCATCGCCATATTTTACGATTTGCAGTTTGTTGCCTTTAATGCCGCCTTTAGCGTTGATATCCC                                      >  SRR4302543.213034/1‑94 (MQ=60)
                                                          CCACCGCAACCGCCTGTTTCGGGTCACAGGCATCGCCATATTTTACGATTTGCAGTTTGTTGCCTTTAATGCCGCCTTTAGCGTTGATATCCGC                                     <  SRR4302543.3060000/94‑1 (MQ=60)
                                                          CCACCGCAACCGCCTGTTTCGGGTCACAGGCATCGCCATATTTTACGATTTGCAGTTTGTTGCCTTTAATGCCGCCTTTAGCGTTGATATCCGC                                     <  SRR4302543.7831383/94‑1 (MQ=60)
                                                          CCACCGCAACCGCCTGTTTCGGGTCACAGGCATCGCCATATTTTACGATTTGCAGTTTGTTGCCTTTAATGCCGCCTTTAGCGTTGATATCCGC                                     <  SRR4302543.843695/94‑1 (MQ=60)
                                                          CCACCGCAACCGCCTGTTTCGGGTCACAGGCATCGCCATATTTTACGAGTTGCAGTTTGTTGCCTTTAATGCCGCCTTTAGCGTTGATATCCGC                                     <  SRR4302543.843689/94‑1 (MQ=60)
                                                           CACCGCAACCGCCTGTTTCGGGTCACAGGCATCGCCATATTTTACGATTTGCAGTTTGTTGCCTTTAATGCCGCCTTTAGCGTTGATATCCGCA                                    >  SRR4302543.5368910/1‑94 (MQ=60)
                                                           CACCGCAACCGCCTGTTTCGGGTCACAGGCATCGCCATATTTTACGATTTGCAGTTTGTTGCCTTTAATGCCGCCTTTAGCGTTGATATCCGCA                                    <  SRR4302543.7968143/94‑1 (MQ=60)
                                                           CACCGCAACCGCATGTTTGGGGTCACAGGCATCGCCATATTTTACGATTTGCAGTGTGTTGCATTTAATGCCGCCTTTAGCGTTGATATCCGCA                                    <  SRR4302543.4845702/94‑1 (MQ=60)
                                                             CCGCACCCGCCTGTTTCGGGTCACAGGCATCGCCATATTTTACGATTTGCAGTTTGTTGCCTTTAATGCCGCCTTTAGCGTTGATATCCGCAAC                                  <  SRR4302543.5592942/94‑1 (MQ=60)
                                                             CCGCAACCGCCTGTTTCGGGTCACAGGCATCGCCATATTTTACGATTTGCAGTTTGTTGCCTTTAATGCCGCCTTTAGCGTTGATATCCGCAAC                                  >  SRR4302543.1780602/1‑94 (MQ=60)
                                                             CCGCAACCGCCTGTTTCGGGTCACAGGCATCGCCATATTTTACGATTTGCAGTTTGTTGCCTTTAATGCCGCCTTTAGCGTTGATATCCGCAAC                                  <  SRR4302543.3510609/94‑1 (MQ=60)
                                                              CGCAACCGCCTGTTTCGGGTCACAGGCATCGCCATATTTTACGATTTGCAGTTTGTTGCCTTTAATGCCGCCTTTAGCGTTGATATCCGCAACC                                 >  SRR4302543.2309099/1‑94 (MQ=60)
                                                              CGCAACCGCCTGTTTCGGGTCACAGGCATCGCCATATTTTACGATTTGCAGTTTGTTGCCTTTAATGCCGCCTTTAGCGTTGATATCCGCAACC                                 >  SRR4302543.5791869/1‑94 (MQ=60)
                                                              CGCAACCGCCTGTTTCGGGTCACAGGCATCGCCATATTTTACGATTTGCAGTTTGTTGCCTTTAATGCCGCCTTTAGCGTTGATATCCGCAACC                                 <  SRR4302543.5564943/94‑1 (MQ=60)
                                                                CAACCGCCTGTTTCGGGTCACAGGCATCGTCATATTTTACGATTTGCAGTTTGTTGCCTTTAATGACGCCTTTAGCGTTGATATCCGCAACCGC                               >  SRR4302543.7815045/1‑94 (MQ=60)
                                                                CAACCGCCTGTTTCGGGTCACAGGCATCGCCATATTTTACGATTTGCAGTTTGTTGCCTTTAATGCCGCCTTTAGCGTTGATATCCGCAACCGC                               >  SRR4302543.4662450/1‑94 (MQ=60)
                                                                CAACCGCCTGTTTCGGGTCACAGGCATCGCCATATTTTACGATTTGCAGTTTGTTGCCTTTAATGCCGCCTTTAGCGTTGATATCCGCAACCGC                               >  SRR4302543.6285427/1‑94 (MQ=60)
                                                                 AACCGCCTGTTTCGGGTCACAGGCATCGCCATATTTTACGATTTGCAGTTTGTTGCCTTTAATGCCGCCTTTAGCGTTGATATCCGCAACCGCC                              >  SRR4302543.1987524/1‑94 (MQ=60)
                                                                 AACCGCCTGTTTCGGGTCACAGGCATCGCCATATTTTACGATTTGCAGTTTGTTGCCTTTAATGCCGCCTTTAGCGTTGATATCCGCAACCGCC                              >  SRR4302543.7555634/1‑94 (MQ=60)
                                                                 AACCGCCTGTTTCGGGTCACAGGCATCGCCATATTTTACGATTTGCAGTTTGTTGCCTTTAATGCCGCCTTTAGCGTTGATATCCGCAACCGCC                              >  SRR4302543.4965974/1‑94 (MQ=60)
                                                                 AACCGCCTGTTTCGGGTCACAGGCATCGCCATATTTTACGATTTGCAGTTTGTTGCCTTTAATGCCGCCTTTAGCGTTGATATCCGCAACCGCC                              >  SRR4302543.3205847/1‑94 (MQ=60)
                                                                 AACCGCCTGTTTCGGGTCACAGGCATCGCCATATTTTACGATTTGCAGTTTGTTGCCTTTAATGCCGCCTTTAGCGTTGATATCCGCAACCGCC                              >  SRR4302543.3569130/1‑94 (MQ=60)
                                                                  ACCGCCTGTTTCGGGTCACAGGCATCGCCATATTTTACGATTTGCAGTTTGTTGCCTTTAATGCCGCCTTTAGCGTTGATATCCGCAACCGCCT                             <  SRR4302543.3233655/94‑1 (MQ=60)
                                                                  ACCGCCTGTTTCGGGTCACAGGCATCGCCATATTTTACGATTTGCAGTTTGTTGCCTTTAATGCCGCCTTTAGCGTTGATATCCGCAACCGCCT                             <  SRR4302543.6721821/94‑1 (MQ=60)
                                                                   CCGCCTGTTTCGGGTCACAGGCATCGCCATATTTTACGATTTGCAGTTTGTTGCCTTTAATGCCGCCTTTAGCGTTGATATCCGCAACCGCCTG                            >  SRR4302543.6938372/1‑94 (MQ=60)
                                                                    CGCCTGTTTCGGGTCACAGGCATCGCCATATTTTACGATTTGCAGTTTGTTGCCTTTAATGCCGCCTTTAGCGTTGATATCCGCAACCGCCTGC                           >  SRR4302543.7417934/1‑94 (MQ=60)
                                                                    CGCCTGTTTCGGGTCACAGGCATCGCCATATTTTACGATTTGCAGTTTGTTGCCTTTAATGCCGCCTTTAGCGTTGATATCCGCAACCGCCTGC                           <  SRR4302543.3939180/94‑1 (MQ=60)
                                                                     GCCTGTTTCGGGTCACAGGCATCGCCATATTTTACGATTTGCAGTTTGTTGCCTTTAATGCCGCCTTTAGCGTTGATATCCGCAACCGCCTGCT                          >  SRR4302543.508939/1‑94 (MQ=60)
                                                                     GCCTGTTTCGGGTCACAGGCATCGCCATATTTTACGATTTGCAGTTTGTTGCCTTTAATGCCGCCTTTAGCGTTGATATCCGCAACCGCCTGCT                          <  SRR4302543.5352351/94‑1 (MQ=60)
                                                                      CCTGTTTCGGGTCACAGGCATCGCCATATTTTACGATTTGCAGTTTGTTGCCTTTAATGCCGCCTTTAGCGTTGATATCCGCAACCGCCTGCTC                         >  SRR4302543.6158045/1‑94 (MQ=60)
                                                                      CCTGTTTCGGGTCACAGGCATCGCCATATTTTACGATTTGCAGTTTGTTGCCTTTAATGCCGCCTTTAGCGTTGATATCCGCAACCGCCTGCTC                         >  SRR4302543.902133/1‑94 (MQ=60)
                                                                      CCTGTTTCGGGTCACAGGCATCGCCATATTTTACGATTTGCAGTTTGTTGCCTTTAATGCCGCCTTTAGCGTTGATATCCGCAACCGCCTGCTC                         <  SRR4302543.1715168/94‑1 (MQ=60)
                                                                      CCTGTTTCGGGTCACAGGCATCGCCATATTTTACGATTTGCAGTTTGTTGCCTTTAATGCCGCCTTTAGCGTTGATATCCGCAACCGCCTGCTC                         >  SRR4302543.6606562/1‑94 (MQ=60)
                                                                       CTGTTTCGGGTCACAGGCATCGCCATATTTTACGATTTGCAGTTTGTTGCCTTTAATGCCGCCTTTAGCGTTGATATCCGCAACCGCCTGCTCT                        >  SRR4302543.5970971/1‑94 (MQ=60)
                                                                       CTGTTTCGGGTCACAGGCATCGCCATATTTTACGATTTGCAGTTTGTTGCCTTTAATGCCGCCTTTAGCGTTGATATCCGCAACCGCCTGCTCT                        >  SRR4302543.4720322/1‑94 (MQ=60)
                                                                        TGTTTCGGGTCACAGGCATCGCCATATTTTACGATTTGCAGTTTGTTGCCTTTAATGCCGCCTTTAGCGTTGATATCCGCAACCGCCTGCTCTG                       >  SRR4302543.126224/1‑94 (MQ=60)
                                                                        TGTTTCGGGTCACAGGCATCGCCATATTTTACGATTTGCAGTTTGTTGCCTTTAATGCCGCCTTTAGCGTTGATATCCGCAACCGCCTGCTCTG                       >  SRR4302543.6660291/1‑94 (MQ=60)
                                                                        TGTTTCGGGTCACAGGCATCGCCATATTTTACGATTTGCAGTTTGTTGCCTTTAATGCCGCCTTTAGCGTTGATATCCGCAACCGCCTGCTCTG                       <  SRR4302543.7953749/94‑1 (MQ=60)
                                                                        TGTTTCGGGTCACAGGCATCGCCATATTTTACGATTTGCAGTTTGTTGCCTTTAATGCCGCCTTTAGCGTTGATATCCGCAACCGCCTGCTCTG                       >  SRR4302543.516355/1‑94 (MQ=60)
                                                                        TGTTTCGGGTCACAGGCATCGCCATATTTTACGATTTGCAGTTTGTTGCCTTTAATGCCGCCTTTAGCGTTGATATCCGCAACCGCCTGCTCTG                       >  SRR4302543.2983952/1‑94 (MQ=60)
                                                                         GTTTCGGGTCACAGGCATCGCCATATTTTACGATTTGCAGTTTGTTGCCTTTAATGCCGCCTTTAGCGTTGATATCCGCAACCGCCTGCTCTGC                      >  SRR4302543.7154358/1‑94 (MQ=60)
                                                                         GTTTCGGGTCACAGGCATCGCCATATTTTACGATTTGCAGTTTGTTGCCTTTAATGCCGCCTTTAGCGTTGATATCCGCAACCGCCTGCTCTGC                      >  SRR4302543.5307340/1‑94 (MQ=60)
                                                                             CGGGTCACAGGCATCGCCATATTTTACGATTTGCAGTTTGTTGCCTTTAATGCCGCCTTTAGCGTTGATATCCGCATCCGCCTGCTCTGCGCCG                  <  SRR4302543.17857/94‑1 (MQ=60)
                                                                             CGGGTCACAGGCATCGCCATATTTTACGATTTGCAGTTTGTTGCCTTTAATGCCGCCTTTAGCGTTGATATCCGCAACCGCCTGCTCTGCGCCG                  >  SRR4302543.4134071/1‑94 (MQ=60)
                                                                             CGGGTCACAGGCATCGCCATATTTTACGATTTGCAGTTTGTTGCCTTTAATGCCGCCTTTAGCGTTGATATCCGCAACCGCCTGCTCTGCGCCG                  <  SRR4302543.18068/94‑1 (MQ=60)
                                                                             CGGGTCACAGGCATCGCCATATTTTACGATTTGCAGTTTGTTGCCTTTAATGCCGCCTTTAGCGTTGATATCCGCAACCGCCTGCTCTGCGCCG                  >  SRR4302543.3379069/1‑94 (MQ=60)
                                                                              GGGTCACAGGCATCGCCATATTTTACGATTTGCAGTTTGTTGCCTTTAATGCCGCCTTTAGCGTTGATATCCGCAACCGCCTGCTCTGCGCCGG                 >  SRR4302543.5333966/1‑94 (MQ=60)
                                                                                GTCACAGGCATCGTCATATTTTACGATTTGCAGTTTGTTGCCTTTAATGCCGCCTTTAGCGTTGATATCCGCAACCGCCTGCTCTGCGCCGGTA               >  SRR4302543.7560156/1‑94 (MQ=60)
                                                                                  CACAGGCATCGCCATATTTTACGATTTGCAGTTTGTTGCCTTTAATGCCGCCTTTAGCGTTGATATCCGCAACCGCCTGCTCTGCGCCGGTAAA             <  SRR4302543.4996473/94‑1 (MQ=60)
                                                                                   ACAGGCATCGCCATATTTTACGATTTGCAGTTTGTTGCCTTTAATGCCGCCTTTAGCGTTGATATCCGCAACCGCCTGCTCTGCGCCGGTAAAC            <  SRR4302543.4423258/94‑1 (MQ=60)
                                                                                   ACAGGCATCGCCATATTTTACGATTTGCAGTTTGTTGCCTTTAATGCCGCCTTTAGCGTTGATATCCGCAACCGCCTGCTCTGCGCCGGTAAAC            <  SRR4302543.131140/94‑1 (MQ=60)
                                                                                    CAGGCATCGCCATATGTTACGATTTGCAGTTTGTTGCCTTTAATGCCGCCTTTAGCGTTGATATCCGCAACCGCCTGCTCTGCGCCGGTAAACT           <  SRR4302543.6112945/94‑1 (MQ=60)
                                                                                     AGGCATCGCCATATTTTACGATTTGCAGTTTGTTGCCTTTAATGCCGCCTTTAGCGTTGATATCCGCAACCGCCTGCTCTGCGCCGGTAAACTC          >  SRR4302543.6303645/1‑94 (MQ=60)
                                                                                     AGGCATCGCCATATTTTACGATTTGCAGTTTGTTGCCTTTAATGCCGCCTTTAGCGTTGATATCCGCAACCGCCTGCTCTGCGCCGGTAAACTC          >  SRR4302543.2270223/1‑94 (MQ=60)
                                                                                      GGCATCGCCATATTTTACGATTTGCAGTTTGTTGCCTTTAATGCCGCCTTTAGCGTTGATATCCGCAACCGCCTGCTCTGCGCCGGTAAACTCC         <  SRR4302543.6487619/94‑1 (MQ=60)
                                                                                       GCATCGCCATATTTTACGATTTGCAGTTTGTTGCCTTTAATGCCGCCTTTAGCGTTGATATCCGCAACCGCCTGCTCTGCGCCGGTAAACTCCT        >  SRR4302543.5810276/1‑94 (MQ=60)
                                                                                       GCATCGCCATATTTTACGATTTGCAGTTTGTTGCCTTTAATGCCGCCTTTAGCGTTGATATCCGCAACCGCCTGCTCTGCGCCGGTAAACTCCT        <  SRR4302543.3733586/94‑1 (MQ=60)
                                                                                       GCATCGCCATATTTTACGATTTGCAGTTTGTTGCCTTTAATGCCGCCTTTAGCGTTGATATCCGCAACCGCCTGCTCTGCGCCGGTAAACTCCT        >  SRR4302543.4021071/1‑94 (MQ=60)
                                                                                       GCATCGCCATATTTTACGATTTGCAGTTTGTTGCCTTTAATGCCGCCTTTAGCGTTGATATCCGCAACCGCCTGCTCTGCGCCGGTAAACTCCT        <  SRR4302543.1045963/94‑1 (MQ=60)
                                                                                         ATCGCCATATTTTACGATTTGCAGTTTGTTGCCTTTAATGCCGCCTTTAGCGTTGATATCCGCAACCGCCTGCTCTGCGCCGGTAAACTCCTGG      >  SRR4302543.7499972/1‑94 (MQ=60)
                                                                                         ATCGCCATATTTTACGATTTGCAGTTTGTTGCCTTTAATGCCGCCTTTAGCGTTGATATCCGCAACCGCCTGCTCTGCGCCGGTAAACTCCTGG      >  SRR4302543.1009499/1‑94 (MQ=60)
                                                                                         ATCGCCATATTTTACGATTTGCAGTTTGTTGCCTTTAATGCCGCCTTTAGCGTTGATATCCACAACCGCCTGCTCTGCGCCGGTAAACTCCTGG      >  SRR4302543.7381649/1‑94 (MQ=60)
                                                                                           CGCCATATTTTACGATTTGCAGTTTGTTGCCTTTAATGCCGCCTTTAGCGTTGATATCCGCAACCGCCTGCTCTGCGCCGGTAAACTCCTGGTC    <  SRR4302543.2188234/94‑1 (MQ=60)
                                                                                           CGCCATATTTTACGATTTGCAGTTTGTTGCCTTTAATGCCGCCTTTAGCGTTGATATCCGCAACCGCCTGCTCTGCGCCGGTAAACTCCTGGTC    >  SRR4302543.1653074/1‑94 (MQ=60)
                                                                                            GCCATATTTTTCGATTTGCAGTTTGTTGCCTTTAATGCCGCCTGTAGCGTTGATATCCGCAACCTCCTGCTCTGCGCCGGTAAACTCCTGGTCA   <  SRR4302543.1422375/94‑1 (MQ=60)
                                                                                            GCCATATTTTACGATTTGCAGTTTGTTGCCTTTAATGCCGCCTTTAGCGTTGATATCCGCAACCGCCTGCTCTGCGCCGGGAAACTCCTGGTCA   >  SRR4302543.3595247/1‑94 (MQ=60)
                                                                                             CCATATTTTACGATTTGCAGTTTGTTGCCTTTAATGCCGCCTTTAGCGTTGATATCCGCAACCGCCTGCTCTGCGCCGGTAAACTCCTGGTCAC  >  SRR4302543.5323358/1‑94 (MQ=60)
                                                                                             CCATATTTTACGATTTGCAGTTTGTTGCCTTTAATGCCGCCTTTAGCGTTGATATCCGCAACCGCCTGCTCTGCGCCGGTAAACTCCTGGTCAC  >  SRR4302543.2046026/1‑94 (MQ=60)
                                                                                             |                                                                                             
GATGAAGAACAGAGGTGACCAATCACATATTTAATGCCGTCGTTAACGACTTTGTTCGCCACCGCAACCGCCTGTTTCGGGTCACAGGCATCGTCATATTTTACGATTTGCAGTTTGTTGCCTTTAATGCCGCCTTTAGCGTTGATATCCGCAACCGCCTGCTCTGCGCCGGTAAACTCCTGGTCAC  >  NC_000913/3596979‑3597165

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑