Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I1 R1 1696 279.3 15874187 97.8% 15524954 93.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,795,982 A→G S320P (TCC→CCC)  rfaK ← putative hexose transferase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,795,9820AG100.0% 1319.8 / NA 417S320P (TCC→CCC) rfaKputative hexose transferase
Reads supporting (aligned to +/- strand):  ref base A (0/0);  new base G (229/188);  total (229/188)

Only 100 of 428 total aligned reads displayed.

TCTTTACTGAATTAGTTAAAGTTTCAGTATCGATATCTTTTACCGTATATGTTGGGGATACTATTTGTATAGATTTATGATGATTCGGGGACCAAATTAAATGCGAGGGATATTCCGGAGTACGTGAATTAGGGTAAAATGCAAGCGTTGGTTTATGATAAGCCGCAGCGATATGAACAAGA  >  NC_000913/3795892‑3796073
                                                                                          |                                                                                           
tttttGCTGAATTAGTTAAAGTTTCAGTATCGATATCTTTTACCGTATATGTTGGGGATACTATTTGTATAGATTTATGATGATTCGGGGGcc                                                                                           <  1:2632842/91‑1 (MQ=255)
tctTTACTGAATTAGTTAAAGTTTCAGTATCGATATCTTTTACCGTATATGTTGGGGATACTATTTGTATAGATTTATGATGATTCGGGGGcc                                                                                           <  1:5686000/93‑1 (MQ=255)
    tACTGAATTAGTTAAAGTTTCAGTATCGATATCTTTTACCGTATATGTTGGGGATACTATTTGTATAGATTTATGATGATTCGGGGGCCAAAt                                                                                       >  1:4429547/1‑93 (MQ=255)
    tACTGAATTAGTTAAAGTTTCAGTATCGATATCTTTTACCGTATATGTTGGGGATACTATTTGTATAGATTTATGATGATTCGGGGGCCAAAt                                                                                       <  1:3976499/93‑1 (MQ=255)
     aCTGAATTAGTTAAAGTTTCAGTATCGATATCTTTTACCGTATATGTTGGGGATACTATTTGTATAGATTTATGATGATTCGGGGGCCAAAtt                                                                                      >  1:706137/1‑93 (MQ=255)
     aCTGAATTAGTTAAAGTTTCAGTATCGATATCTTTTACCGTATATGTTGGGGATACTATTTGTATAGATTTATGATGATTCGGGGGCCAAAtt                                                                                      >  2:4413542/1‑93 (MQ=255)
     aCTGAATTAGTTAAAGTTTCAGTATCGATATCTTTTACCGTATATGTTGGGGATACTATTTGTATAGATTTATGATGATTCGGGGGCCAAAtt                                                                                      <  1:3710670/93‑1 (MQ=255)
      cTGAATTAGTTAAAGTTTCAGTATCGATATCTTTTACCGTATATGTTGGGGATACTATTTGTATAGATTTATGATGATTCGGGGGCCAAATTa                                                                                     >  2:6022794/1‑93 (MQ=255)
       tGAATTAGTTAAAGTTTCAGTATCGATATCTTTTACCGTATATGTTGGGGATACTATTTGTATAGATTTATGATGATTCGGGGGCCAAATTaa                                                                                    <  1:5887881/93‑1 (MQ=255)
       tGAATTAGTTAAAGTTTCAGTATCGATATCTTTTACCGTATATGTTGGGGATACTATTTGTATAGATTTATGATGATTCGGGGGCCAAATTaa                                                                                    >  1:5798808/1‑93 (MQ=255)
       tGAATTAGTTAAAGTTTCAGTATCGATATCTTTTACCGTATATGTTGGGGATACTATTTGTATAGATTTATGATGATTCGGGGGCCAAATTaa                                                                                    >  1:1817981/1‑93 (MQ=255)
       tGAATTAGTTAAAGTTTCAGTATCGATATCTTTTACCGTATATGTTGGGGATACTATTTGTATAGATTTATGATGATTCGGGGGCCAAATTaa                                                                                    >  2:7246273/1‑93 (MQ=255)
        gAATTAGTTAAAGTTTCAGTATCGATATCTTTTACCGTATATGTTGGGGATACTATTTGTATAGATTTATGATGATTCGGGGGCCAAATTaaa                                                                                   >  1:7385319/1‑93 (MQ=255)
        gAATTAGTTAAAGTTTCAGTATCGATATCTTTTACCGTATATGTTGGGGATACTATTTGTATAGATTTATGATGATTCGGGGGCCAAATTaaa                                                                                   >  2:2864433/1‑93 (MQ=255)
         aaTTAGTTAAAGTTTCAGTATCGATATCTTTTACCGTATATGTTGGGGATACTATTTGTATAGATTTATGATGATTCGGGGGCCAAATTAAAt                                                                                  >  1:941083/1‑93 (MQ=255)
         aaTTAGTTAAAGTTTCAGTATCGATATCTTTTACCGTATATGTTGGGGATACTATTTGTATAGATTTATGATGATTCGGGGGCCAAATTAAAt                                                                                  >  2:1981949/1‑93 (MQ=255)
          aTTAGTTAAAGTTTCAGTATCGATATCTTTTACCGTATATGTTGGGGATACTATTTGTATAGATTTATGATGATTCGGGGGCCAAATTAAATg                                                                                 >  2:4597978/1‑93 (MQ=255)
           ttAGTTAAAGTTTCAGTATCGATATCTTTTACCGTATATGTTGGGGATACTATTTGTATAGATTTATGATGATTCGGGGGCCAAATTAAATGc                                                                                >  2:6402774/1‑93 (MQ=255)
           ttAGTTAAAGTTTCAGTATCGATATCTTTTACCGTATATGTTGGGGATACTATTTGTATAGATTTATGATGATTCGGGGGCCAAATTAAATGc                                                                                <  1:4725123/93‑1 (MQ=255)
             aGTTAAAGTTTCAGTATCGATATCTTTTACCGTATATGTTGGGGATACTATTTGTATAGATTTATGATGATTCGGGGGCCAAATTAAATGCGa                                                                              <  2:6619578/93‑1 (MQ=255)
                 aaaGTTTCAGTATCGATATCTTTTACCGTATATGTTGGGGATACTATTTGTATAGATTTATGATGATTCGGGGGCCAAATTAAATGCGAGGGa                                                                          >  1:3213510/1‑93 (MQ=255)
                   aGTTTCAGTATCGATATCTTTTACCGTATATGTTGGGGATACTATTTGTATAGATTTATGATGATTCGGGGGCCAAATTAAATGCGAGGGata                                                                        <  1:6244755/93‑1 (MQ=255)
                   aGTTTCAGTATCGATATCTTTTACCGTATATGTTGGGGATACTATTTGTATAGATTTATGATGATTCGGGGGCCAAATTAAATGCGAGGGata                                                                        <  2:6933389/93‑1 (MQ=255)
                     tttCAGTATCGATATCTTTTACCGTATATGTTGGGGATACTATTTGTATAGATTTATGATGATTCGGGGGCCAAATTAAATGCGAGGGATAtt                                                                      >  2:3498399/1‑93 (MQ=255)
                     tttCAGTATCGATATCTTTTACCGTATATGTTGGGGATACTATTTGTATAGATTTATGATGATTCGGGGGCCAAATTAAATGCGAGGGATAtt                                                                      <  2:4936238/93‑1 (MQ=255)
                       tCAGTATCGATATCTTTTACCGTATATGTTGGGGATACTATTTGTATAGATTTATGATGATTCGGGGGCCAAATTAAATGCGAGGGATATTcc                                                                    >  2:619873/1‑93 (MQ=255)
                       tCAGTATCGATATCTTTTACCGTATATGTTGGGGATACTATTTGTATAGATTTATGATGATTCGGGGGCCAAATTAAATGCGAGGGATATTcc                                                                    >  1:4988797/1‑93 (MQ=255)
                       tCAGTATCGATATCTTTTACCGTATATGTTGGGGATACTATTTGTATAGATTTATGATGATTCGGGGGCCAAATTAAATGCGAGGGATATTcc                                                                    >  1:1732859/1‑93 (MQ=255)
                       tCAGTATCGATATCTTTTACCGTATATGTTGGGGATACTATTTGTATAGATTTATGATGATTCGGGGGCCAAATTAAATGCGAGGGATATTcc                                                                    <  2:3878541/93‑1 (MQ=255)
                         aGTATCGATATCTTTTACCGTATATGTTGGGGATACTATTTGTATAGATTTATGATGATTCGGGGGCCAAATTAAATGCGAGGGATATTCCgg                                                                  >  2:7636834/1‑93 (MQ=255)
                         aGTATCGATATCTTTTACCGTATATGTTGGGGATACTATTTGTATAGATTTATGATGATTCGGGGGCCAAATTAAATGCGAGGGATATTCCgg                                                                  >  1:5081322/1‑93 (MQ=255)
                          gTATCGATATCTTTTACCGTATATGTTGGGGATACTATTTGTATAGATTTATGATGATTCGGGGGCCAAATTAAATGCGAGGGATATTCCGGa                                                                 >  1:3136461/1‑93 (MQ=255)
                          gTATCGATATCTTTTACCGTATATGTTGGGGATACTATTTGTATAGATTTATGATGATTCGGGGGCCAAATTAAATGCGAGGGATATTCCGGa                                                                 <  2:5386992/93‑1 (MQ=255)
                             tCGATATCTTTTACCGTATATGTTGGGGATACTATTTGTATAGATTTATGATGATTCGGGGGCCAAATTAAATGCGAGGGATATTCCGGAGTa                                                              >  2:3184119/1‑93 (MQ=255)
                               gATATCTTTTACCGTATATGTTGGGGATACTATTTGTATAGATTTATGATGATTCGGGGGCCAAATTAAATGCGAGGGATATTCCGGAGTACg                                                            >  1:2686222/1‑93 (MQ=255)
                                   tCTTTTACCGTATATGTTGGGGATACTATTTGTATAGATTTATGATGATTCGGGGGCCAAATTAAATGCGAGGGATATTCCGGAGTACGTGaa                                                        <  1:4110305/93‑1 (MQ=255)
                                   tCTTTTACCGTATATGTTGGGGATACTATTTGTATAGATTTATGATGATTCGGGGGCCAAATTAAATGCGAGGGATATTCCGGAGTACGTGaa                                                        >  2:2297409/1‑93 (MQ=255)
                                    cTTTTACCGTATATGTTGGGGATACTATTTGTATAGATTTATGATGATTCGGGGGCCAAATTAAATGCGAGGGATATTCCGGAGTACGTGAAt                                                       >  1:5188777/1‑93 (MQ=255)
                                     ttttACCGTATATGTTGGGGATACTATTTGTATAGATTTATGATGATTCGGGGGCCAAATTAAATGCGAGGGATATTCCGGAGTACGTGAAtt                                                      <  2:4009052/93‑1 (MQ=255)
                                     ttttACCGTATATGTTGGGGATACTATTTGTATAGATTTATGATGATTCGGGGGCCAAATTAAATGCGAGGGATATTCCGGAGTACGTGAAtt                                                      >  2:6712029/1‑93 (MQ=255)
                                       ttACCGTATATGTTGGGGATACTATTTGTATAGATTTATGATGATTCGGGGGCCAAATTAAATGCGAGGGATATTCCGGAGTACGTGAATTAg                                                    >  2:3556503/1‑93 (MQ=255)
                                       ttACCGTATATGTTGGGGATACTATTTGTATAGATTTATGATGATTCGGGGGCCAAATTAAATGCGAGGGATATTCCGGAGTACGTGAATTAg                                                    <  2:7520701/93‑1 (MQ=255)
                                        tACCGTATATGTTGGGGATACTATTTGTATAGATTTATGATGATTCGGGGGCCAAATTAAATGCGAGGGATATTCCGGAGTACGTGAATTAgg                                                   <  1:6083611/93‑1 (MQ=255)
                                        tACCGTATATGTTGGGGATACTATTTGTATAGATTTAGGATGATACGGGGGCCAAATTAAATGCGAGGGATATTCCGGAGTACGTGAATTAgg                                                   <  1:7799492/93‑1 (MQ=255)
                                            gTATATGTTGGGGATACTATTTGTATAGATTTATGATGATTCGGGGGCCAAATTAAATGCGAGGGATATTCCGGAGTACGTGAATTAGGGTaa                                               >  2:7185845/1‑93 (MQ=255)
                                             tataTGTTGGGGATACTATTTGTATAGATTTATGATGATTCGGGGGCCAAATTAAATGCGAGGGATATTCCGGAGTACGTGAATTAGGGTaaa                                              >  2:2340638/1‑93 (MQ=255)
                                             tataTGTTGGGGATACTATTTGTATAGATTTATGATGATTCGGGGGCCAAATTAAATGCGAGGGATATTCCGGAGTACGTGAATTAGGGTaaa                                              <  2:7842467/93‑1 (MQ=255)
                                              atatGTTGGGGATACTATTTGTATAGATTTATGATGATTCGGGGGCCAAATTAAATGCGAGGGATATTCCGGAGTACGTGAATTAGGGTaaaa                                             <  2:2819873/93‑1 (MQ=255)
                                              atatGTTGGGGATACTATTTGTATAGATTTATGATGATTCGGGGGCCAAATTAAATGCGAGGGATATTCCGGAGTACGTGAATTAGGGTaaaa                                             <  1:7908458/93‑1 (MQ=255)
                                              atatGTTGGGGATACTATTTGTATAGATTTATGATGATTCGGGGGCCAAATTAAATGCGAGGGATATTCCGGAGTACGTGAATTAGGGTaaaa                                             <  1:119616/93‑1 (MQ=255)
                                               tatGTTGGGGATACTATTTGTATAGATTTATGATGATTCGGGGGCCAAATTAAATGCGAGGGATATTCCGGAGTACGTGAATTAGGGTAAAAt                                            <  1:2941482/93‑1 (MQ=255)
                                               tatGTTGGGGATACTATTTGTATAGATTTATGATGATTCGGGGGCCAAATTAAATGCGAGGGATATTCCGGAGTACGTGAATTAGGGTAAAAt                                            >  2:3765801/1‑93 (MQ=255)
                                               tatGTTGGGGATACTATTTGTATAGATTTATGATGATTCGGGGGCCAAATTAAATGCGAGGGATATTCCGGAGTACGTGAATTAGGGTAAAAt                                            >  2:2607404/1‑93 (MQ=255)
                                                atGTTGGGGATACTATTTGTATAGATTTATGATGATTCGGGGGCCAAATTAAATGCGAGGGATATTCCGGAGTACGTGAATTAGGGTAAAATg                                           <  2:6784436/93‑1 (MQ=255)
                                                 tGTTGGGGATACTATTTGTATAGATTTATGATGATTCGGGGGCCAAATTAAATGCGAGGGATATTCCGGAGTACGTGAATTAGGGTAAAATga                                          >  1:254430/1‑92 (MQ=255)
                                                 tGTTGGGGATACTATTTGTATAGATTTATGATGATTCGGGGGCCAAATTAAATGCGAGGGATATTCCGGAGTACGTGAATTAGGGTAAAATga                                          >  1:5372611/1‑92 (MQ=255)
                                                 tGTTGGGGATACTATTTGTATAGATTTATGATGATTCGGGGGCCAAATTAAATGCGAGGGATATTCCGGAGTACGTGAATTAGGGTAAAATGc                                          <  2:1357123/93‑1 (MQ=255)
                                                 tGTTGGGGATACTATTTGTATAGATTTATGATGATTCGGGGGCCAAATTAAATGCGAGGGATATTCCGGAGTACGTGAATTAGGGTAAAATGc                                          >  1:5478682/1‑93 (MQ=255)
                                                  gTTGGGGATACTATTTGTATAGATTTATGATGATTCGGGGGCCAAATTAAATGCGAGGGATATTCCGGAGTACGTGAATTAGGGTAAAATGCa                                         <  1:4166198/93‑1 (MQ=255)
                                                    tGGGGATACTATTTGTATAGATTTATGATGATTCGGGGGCCAAATTAAATGCGAGGGATATTCCGGAGTACGTGAATTAGGGTAAAATGCAAg                                       <  2:1580501/93‑1 (MQ=255)
                                                      gggATACTATTTGTATAGATTTATGATGATTCGGGGGCCAAATTAAATGCGAGGGATATTCCGGAGTACGTGAATTAGGGTAAAATGCAAGCg                                     <  2:2987778/93‑1 (MQ=255)
                                                      gggATACTATTTGTATAGATTTATGATGATTCGGGGGCCAAATTAAATGCGAGGGATATTCCGGAGTACGTGAATTAGGGTAAAATGCAAGCg                                     <  1:4640937/93‑1 (MQ=255)
                                                        gATACTATTTGTATAGATTTATGATGATTCGGGGGCCAAATTAAATGCGAGGGATATTCCGGAGTACGTGAATTAGGGTAAAATGCAAGCGtt                                   <  2:2734927/93‑1 (MQ=255)
                                                        gATACTATTTGTATAGATTTATGATGATTCGGGGGCCAAATTAAATGCGAGGGATATTCCGGAGTACGTGAATTAGGGTAAAATGCAAGCGtt                                   <  2:5366146/93‑1 (MQ=255)
                                                         aTACTATTTGTATAGATTTATGATGATTCGGGGGCCAAATTAAATGCGAGGGATATTCCGGAGTACGTGAATTAGGGTAAAATGCAAGCGTTg                                  >  1:3864122/1‑93 (MQ=255)
                                                         aTACTATTTGTATAGATTTATGATGATTCGGGGGCCAAATTAAATGCGAGGGATATTCCGGAGTACGTGAATTAGGGTAAAATGCAAGCGTTg                                  <  1:1016588/93‑1 (MQ=255)
                                                         aTACTATTTGTATAGATTTATGATGATTCGGGGGCCAAATTAAATGCGAGGGATATTCCGGAGTACGTGAATTAGGGTAAAATGCAAGCGTTg                                  <  2:1200193/93‑1 (MQ=255)
                                                           aCTATTTGTATAGATTTATGATGATTCGGGGGCCAAATTAAATGCGAGGGATATTCCGGAGTACGTGAATTAGGGTAAAATGCAAGCGTTGGt                                <  2:1690600/93‑1 (MQ=255)
                                                           aCTATTTGTATAGATTTATGATGATTCGGGGGCCAAATTAAATGCGAGGGATATTCCGGAGTACGTGAATTAGGGTAAAATGCAAGCGTTGGt                                >  1:7161878/1‑93 (MQ=255)
                                                             tATGTGTATAGATTTATGATGATTCGGGGGCCAAATTAAATGCGAGGGATATTCCGGAGTACGTGAATTAGGGTAAAATGCAAGCGTTGGttt                              <  1:2100058/93‑1 (MQ=255)
                                                              aTTTGTATAGATTTATGATGATTCGGGGGCCAAATTAAATGCGAGGGATATTCCGGAGTACGTGAATTAGGGTAAAATGCAAGCGTTGGTTTa                             >  1:1409304/1‑93 (MQ=255)
                                                              aTTTGTATAGATTTATGATGATTCGGGGGCCAAATTAAATGCGAGGGATATTCCGGAGTACGTGAATTAGGGTAAAATGCAAGCGTTGGTTTa                             <  2:5068259/93‑1 (MQ=255)
                                                               tttGTATAGATTTATGATGATTCGGGGGCCAAATTAAATGCGAGGGATATTCCGGAGTACGTGAATTAGGGTAAAATGCAAGCGTTGGTTTAt                            >  2:3139098/1‑93 (MQ=255)
                                                               tttGTATAGATTTATGATGATTCGGGGGCCAAATTAAATGCGAGGGATATTCCGGAGTACGTGAATTAGGGTAAAATGCAAGCGTTGGTTTAt                            <  1:2193974/93‑1 (MQ=255)
                                                               tttGTATAGATTTATGATGATTCGGGGGCCAAATTAAATGCGAGGGATATTCCGGAGTACGTGAATTAGGGTAAAATGCAAGCGTTGGTTTAt                            >  1:6844739/1‑93 (MQ=255)
                                                                  gTATAGATTTATGATGATTCGGGGGCCAAATTAAATGCGAGGGATATTCCGGAGTACGTGAATTAGGGTAAAATGCAAGCGTTGGTTTATGAt                         >  1:2400269/1‑93 (MQ=255)
                                                                  gTATAGATTTATGATGATTCGGGGGCCAAATTAAATGCGAGGGATATTCCGGAGTACGTGAATTAGGGTAAAATGCAAGCGTTGGTTTATGAt                         <  2:5186969/93‑1 (MQ=255)
                                                                   tataGATTTATGATGATTCGGGGGCCAAATTAAATGCGAGGGATATTCCGGAGTACGTGAATTAGGGTAAAATGCAAGCGTTGGTTTATGATa                        <  2:64370/93‑1 (MQ=255)
                                                                    ataGATTTATGATGATTCGGGGGCCAAATTAAATGCGAGGGATATTCCGGAGTACGTGAATTAGGGTAAAATGCAAGCGTTGGTTTATGATaa                       >  2:5833038/1‑93 (MQ=255)
                                                                    ataGATTTATGATGATTCGGGGGCCAAATTAAATGCGAGGGATATTCCGGAGTACGTGAATTAGGGTAAAATGCAAGCGTTGGTTTATGATaa                       <  2:5472029/93‑1 (MQ=255)
                                                                     taGATTTATGATGATTCGGGGGCCAAATTAAATGCGAGGGATATTCCGGAGTACGTGAATTAGGGTAAAATGCAAGCGTTGGTTTATGATAAg                      >  1:2757005/1‑93 (MQ=255)
                                                                      aGATTTATGATGATTCGGGGGCCAAATTAAATGCGAGGGATATTCCGGAGTACGTGAATTAGGGTAAAATGCAAGCGTTGGTTTATGATAAGc                     <  2:5682350/93‑1 (MQ=255)
                                                                      aGATTTATGATGATTCGGGGGCCAAATTAAATGCGAGGGATATTCCGGAGTACGTGAATTAGGGTAAAATGCAAGCGTTGGTTTATGATAAGc                     <  1:6179061/93‑1 (MQ=255)
                                                                        aTTTATGATGATTCGGGGGCCAAATTAAATGCGAGGGATATTCCGGAGTACGTGAATTAGGGTAAAATGCAAGCGTTGGTTTATGATAAGCCg                   >  1:4857408/1‑93 (MQ=255)
                                                                         tttATGATGATTCGGGGGCCAAATTAAATGCGAGGGATATTCCGGAGTACGTGAATTAGGGTAAAATGCAAGCGTTGGTTTATGATAAGCCGc                  >  1:3590461/1‑93 (MQ=255)
                                                                          ttATGATGATTCGGGGGCCAAATTAAATGCGAGGGATATTCCGGAGTACGTGAATTAGGGTAAAATGCAAGCGTTGGTTTATGATAAGCCGCa                 <  1:230087/93‑1 (MQ=255)
                                                                           tATGATGATTCGGGGGCCAAATTAAATGCGAGGGATATTCCGGAGTACGTGAATTAGGGTAAAATGCAAGCGTTGGTTTATGATAAGCCGCAg                >  1:4518175/1‑93 (MQ=255)
                                                                             tgatgaTTCGGGGGCCAAATTAAATGCGAGGGATATTCCGGAGTACGTGAATTAGGGTAAAATGCAAGCGTTGGTTTATGATAAGCCGCAGCg              >  1:1656478/1‑93 (MQ=255)
                                                                              gatgatTCGGGGGCCAAATTAAATGCGAGGGATATTCCGGAGTACGTGAATTAGGGTAAAATGCAAGCGTTGGTTTATGATAAGCCGCAGCGa             >  1:725206/1‑93 (MQ=255)
                                                                                 gatTCGGGGGCCAAATTAAATGCGAGGGATATTCCGGAGTACGTGAATTAGGGTAAAATGCAAGCGTTGGTTTATGATAAGCCGCAGCGatat          <  2:1648862/93‑1 (MQ=255)
                                                                                 gatTCGGGGGCCAAATTAAATGCGAGGGATATTCCGGAGTACGTGAATTAGGGTAAAATGCAAGCGTTGGTTTATGATAAGCCGCAGCGatat          >  2:4852235/1‑93 (MQ=255)
                                                                                 gatTCGGGGGCCAAATTAAATGCGAGGGATATTCCGGAGTACGTGAATTAGGGTAAAATGCAAGCGTTGGTTTATGATAAGCCGCAGCGatat          <  1:2866515/93‑1 (MQ=255)
                                                                                  atTCGGGGGCCAAATTAAATGCGAGGGATATTCCGGAGTACGTGAATTAGGGTAAAATGCAAGCGTTGGTTTATGATAAGCCGCAGCGATATg         <  1:1999443/93‑1 (MQ=255)
                                                                                     cGGGGGCCAAATTAAATGCGAGGGATATTCCGGAGTACGTGAATTAGGGTAAAATGCAAGCGTTGGTTTATGATAAGCCGCAGCGATATGAAc      <  1:7647301/93‑1 (MQ=255)
                                                                                     cGGGGGCCAAATTAAATGCGAGGGATATTCCGGAGTACGTGAATTAGGGTAAAATGCAAGCGTTGGTTTATGATAAGCCGCAGCGATATGAAc      <  2:4131213/93‑1 (MQ=255)
                                                                                     cGGGGGCCAAATTAAATGCGAGGGATATTCCGGAGTACGTGAATTAGGGTAAAATGCAAGCGTTGGTTTATGATAAGCCGCAGCGATATGAAc      >  1:3394620/1‑93 (MQ=255)
                                                                                      ggggGCCAAATTAAATGCGAGGGATATTCCGGAGTACGTGAATTAGGGTAAAATGCAAGCGTTGGTTTATGATAAGCCGCAGCGATATGAACa     <  2:3954640/93‑1 (MQ=255)
                                                                                      ggggGCCAAATTAAATGCGAGGGATATTCCGGAGTACGTGAATTAGGGTAAAATGCAAGCGTTGGTTTATGATAAGCCGCAGCGATATGAACa     <  2:2099847/93‑1 (MQ=255)
                                                                                       ggggCCAAATTAAATGCGAGGGATATTCCGGAGTACGTGAATTAGGGTAAAATGCAAGCGTTGGTTTATGATAAGCCGCAGCGATATGAACaa    <  1:6390520/93‑1 (MQ=255)
                                                                                         gACCAATTTAGATGCGAGGAATATTCCGGAGAACGTGAATTAGGGTAGAATGCAAGCGTTGGTTTATGCTAAGTCGCAGAGATATGAACAaga  <  2:7003862/93‑1 (MQ=255)
                                                                                          |                                                                                           
TCTTTACTGAATTAGTTAAAGTTTCAGTATCGATATCTTTTACCGTATATGTTGGGGATACTATTTGTATAGATTTATGATGATTCGGGGACCAAATTAAATGCGAGGGATATTCCGGAGTACGTGAATTAGGGTAAAATGCAAGCGTTGGTTTATGATAAGCCGCAGCGATATGAACAAGA  >  NC_000913/3795892‑3796073

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 

GATK/CNVnator alignment

BRESEQ :: bam2aln output Only 200 of 236 total aligned reads displayed.
ATCTCTTTACTGAATTAGTTAAAGTTTCAGTATCGATATCTTTTACCGTATATGTTGGGGATACTATTTGTATAGATTTATGATGATTCGGGGACCAAATTAAATGCGAGGGATATTCCGGAGTACGTGAATTAGGGTAAAATGCAAGCGTTGGTTTATGATAAGCCGCAGCGATATGAACAAGAGC  >  NC_000913/3795889‑3796075
                                                                                             |                                                                                             
ATCTCTTTACTGAATTAGTTAAAGTTTCAGTATCGATATCTTTTACCGTATATGTTGGGGATACTATTTGTATAGATTTATGATGATTCGGGGG                                                                                               >  SRR4302543.2114515/1‑94 (MQ=60)
ATCTCTTTACTGAATTAGTTAAAGTTTCAGTATCGATATCTTTTACCGTATATGTTGGGGATACTATTTGTATAGATTTATGATGATTCGGGGG                                                                                               <  SRR4302543.5317816/94‑1 (MQ=60)
 TCTCTTTACTGAATTAGTTAAAGTTTCAGTATCGATATCTTTTACCGTATATGTTGGGGATACTATTTGTATAGATTTATGATGATTCGGGGGC                                                                                              >  SRR4302543.2382778/1‑94 (MQ=60)
  CTCTTTACTGAATTAGTTAAAGTTTCAGTATCGATATCTTTTACCGTATATGTTGGGGATACTATTTGTATAGATTTATGATGATTCGGGGGCC                                                                                             >  SRR4302543.2205395/1‑94 (MQ=60)
  CTCTTTACTGAATTAGTTAAAGTTTCAGTATCGATATCTTTTACCGTATATGTTGGGGATACTATTTGTATAGATTTATGATGATTCGGGGGCC                                                                                             <  SRR4302543.1285345/94‑1 (MQ=60)
  CTCTTTACTGAATTAGTTAAAGTTTCAGTATCGATATCTTTTACCGTATATGTTGGGGATACTATTTGTATAGATTTATGATGATTCGGGGGCC                                                                                             >  SRR4302543.7628458/1‑94 (MQ=60)
  CTCTTTACTGAATTAGTTAAAGTTTCAGTATCGATATCTTTTACCGTATATGTTGGGGATACTATTTGTATAGATTTATGATGATTCGGGGGCC                                                                                             >  SRR4302543.2696374/1‑94 (MQ=60)
   TTTTTGCTGAATTAGTTAAAGTTTCAGTATCGATATCTTTTACCGTATATGTTGGGGATACTATTTGTATAGATTTATGATGATTCGGGGGCCA                                                                                            <  SRR4302543.2656679/94‑1 (MQ=60)
   TCTTTACTGAATTAGTTAAAGTTTCAGTATCGATATCTTTTACCGTATATGTTGGGGATACTATTTGTATAGATTTATGATGATTCGGGGGCCA                                                                                            <  SRR4302543.5737892/94‑1 (MQ=60)
   TCTTTACTGAATTAGTTAAAGTTTCAGTATCGATATCTTTTACCGTATATGTTGGGGATACTATTTGTATAGATTTATGATGATTCGGGGGCCA                                                                                            >  SRR4302543.2321263/1‑94 (MQ=60)
   TCTTTACTGAATTAGTTAAAGTTTCAGTATCGATATCTTTTACCGTATATGTTGGGGATACTATTTGTATAGATTTATGATGATTCGGGGGCCA                                                                                            >  SRR4302543.1944341/1‑94 (MQ=60)
    CTTTACTGAATTAGTTAAAGTTTCAGTATCGATATCTTTTACCGTATATGTTGGGGATACTATTTGTATAGATTTATGATGATTCGGGGGCCAA                                                                                           >  SRR4302543.5992785/1‑94 (MQ=60)
    CTTTACTGAATTAGTTAAAGTTTCAGTATCGATATCTTTTAACGTATATGTTGGGGATACTATTTGTATAGATTTATGATGATTCGGGGGCCAA                                                                                           >  SRR4302543.3307191/1‑94 (MQ=60)
     TTTACTGAATTAGTTAAAGTTTCAGTATCGATATCTTTTACCGTATATGTTGGGGATACTATTTGTATAGATTTATGATGATTCGGGGGCCAAA                                                                                          >  SRR4302543.3227262/1‑94 (MQ=60)
     TTTACTGAATTAGTTAAAGTTTCAGTATCGATATCTTTTACCGTATATGTTGGGGATACTATTTGTATAGATTTATGATGATTCGGGGGCCAAA                                                                                          >  SRR4302543.1773413/1‑94 (MQ=60)
      TTACTGAATTAGTTAAAGTTTCAGTATCGATATCTTTTACCGTATATGTTGGGGATACTATTTGTATAGATTTATGATGATTCGGGGGCCAAAT                                                                                         >  SRR4302543.2157667/1‑94 (MQ=60)
      TTACTGAATTAGTTAAAGTTTCAGTATCGATATCTTTTACCGTATATGTTGGGGATACTATTTGTATAGATTTATGATGATTCGGGGGCCAAAT                                                                                         <  SRR4302543.2269061/94‑1 (MQ=60)
      TTACTGAATTAGTTAAAGTTTCAGTATCGATATCTTTTACCGTATATGTTGGGGATACTATTTGTATAGATTTATGATGATTCGGGGGCCAAAT                                                                                         >  SRR4302543.4469675/1‑94 (MQ=60)
      TTACTGAATTAGTTAAAGTTTCAGTATCGATATCTTTTACCGTATATGTTGGGGATACTATTTGTATAGATTTATGATGATTCGGGGGCCAAAT                                                                                         >  SRR4302543.6673466/1‑94 (MQ=60)
      TTACTGAATTAGTTAAAGTTTCAGTATCGATATCTTTTACCGTATATGTTGGGGATACTATTTGTATAGATTTATGATGATTCGGGGGCCAAAT                                                                                         >  SRR4302543.4622103/1‑94 (MQ=60)
       TACTGAATTAGTTAAAGTTTCAGTATCGATATCTTTTACCGTATATGTTGGGGATACTATTTGTATAGATTTATGATGATTCGGGGGCCAAATT                                                                                        >  SRR4302543.3852535/1‑94 (MQ=60)
       TACTGAATTAGTTAAAGTTTCAGTATCGATATCTTTTACCGTATATGTTGGGGATACTATTTGTATAGATTTATGATGATTCGGGGGCCAAATT                                                                                        <  SRR4302543.4011755/94‑1 (MQ=60)
       TACTGAATTAGTTAAAGTTTCAGTATCGATATCTTTTACCGTATATGTTGGGGATACTATTTGTATAGATTTATGATGATTCGGGGGCCAAATT                                                                                        >  SRR4302543.712568/1‑94 (MQ=60)
         CTGAATTAGTTAAAGTTTCAGTATCGATATCTTTTACCGTATATGTTGGGGATACTATTTGTATAGATTTATGATGATTCGGGGGCCAAATTAA                                                                                      >  SRR4302543.1834288/1‑94 (MQ=60)
         CTGAATTAGTTAAAGTTTCAGTATCGATATCTTTTACCGTATATGTTGGGGATACTATTTGTATAGATTTATGATGATTCGGGGGCCAAATTAA                                                                                      >  SRR4302543.872226/1‑94 (MQ=60)
         CTGAATTAGTTAAAGTTTCAGTATCGATATCTTTTACCGTATATGTTGGGGATACTATTTGTATAGATTTATGATGATTCGGGGGCCAAATTAA                                                                                      >  SRR4302543.7816946/1‑94 (MQ=60)
          TGAATTAGTTAAAGTTTCAGTATCGATATCTTTTACCGTATATGTTGGGGATACTATTTGTATAGATTTATGATGATTCGGGGGCCAAATTAAA                                                                                     <  SRR4302543.5941554/94‑1 (MQ=60)
          TGAATTAGTTAAAGTTTCAGTATCGATATCTTTTACCGTATATGTTGGGGATACTATTTGTATAGATTTATGATGATTCGGGGGCCAAATTAAA                                                                                     >  SRR4302543.2350378/1‑94 (MQ=60)
          TGAATTAGTTAAAGTTTCAGTATCGATATCTTTTACCGTATATGTTGGGGATACTATTTGTATAGATTTATGATGATTCGGGGGCCAAATTAAA                                                                                     >  SRR4302543.4144378/1‑94 (MQ=60)
          TGAATTAGTTAAAGTTTCAGTATCGATATCTTTTACCGTATATGTTGGGGATACTATTTGTATAGATTTATGATGATTCGGGGGCCAAATTAAA                                                                                     <  SRR4302543.6144296/94‑1 (MQ=60)
          TGAATTAGTTAAAGTTTCAGTATCGATATCTTTTACCGTATATGTTGGGGATACTATTTGTATAGATTTATGATGATTCGGGGGCCAAATTAAA                                                                                     >  SRR4302543.7456286/1‑94 (MQ=60)
           GAATTAGTTAAAGTTTCAGTATCGATATCTTTTACCGTATATGTTGGGGATACTATTTGTATAGATTTATGATGATTCGGGGGCCAAATTAAAT                                                                                    >  SRR4302543.4922403/1‑94 (MQ=60)
           GAATTAGTTAAAGTTTCAGTATCGATATCTTTTACCGTATATGTTGGGGATACTATTTGTATAGATTTATGATGATTCGGGGGCCAAATTAAAT                                                                                    <  SRR4302543.2254328/94‑1 (MQ=60)
           GAATTAGTTAAAGTTTCAGTATCGATATCTTTTACCGTATATGTTGGGGATACTATTTGTATAGATTTATGATGATTCGGGGGCCAAATTAAAT                                                                                    <  SRR4302543.5592571/94‑1 (MQ=60)
           GAATTAGTTAAAGTTTCAGTATCGATATCTTTTACCGTATATGTTGGGGATACTATTTGTATAGATTTATGATGATTCGGGGGCCAAATTAAAT                                                                                    <  SRR4302543.1782313/94‑1 (MQ=60)
            AATTAGTTAAAGTTTCAGTATCGATATCTTTTACCGTATATGTTGGGGATACTATTTGTATAGATTTATGATGATTCGGGGGCCAAATTAAATG                                                                                   <  SRR4302543.3614964/94‑1 (MQ=60)
            AATTAGTTAAAGTTTCAGTATCGATATCTTTTACCGTATATGTTGGGGATACTATTTGTATAGATTTATGATGATTCGGGGGCCAAATTAAATG                                                                                   <  SRR4302543.3684950/94‑1 (MQ=60)
              TTAGTTAAAGTTTCAGTATCGATATCTTTTACCGTATATGTTGGGGATACTATTTGTATAGATTTATGATGATTCGGGGGCCAAATTAAATGCG                                                                                 <  SRR4302543.4768301/94‑1 (MQ=60)
              TTAGTTAAAGTTTCAGTATCGATATCTTTTACCGTATATGTTGGGGATACTATTTGTATAGATTTATGATGATTCGGGGGCCAAATTAAATGCG                                                                                 >  SRR4302543.2777543/1‑94 (MQ=60)
              TTAGTTAAAGTTTCAGTATCGATATCTTTTACCGTATATGTTGGGGATACTATTTGTATAGATTTATGATGATTCGGGGGCCAAATTAAATGCG                                                                                 >  SRR4302543.7317204/1‑94 (MQ=60)
              TTAGTTAAAGTTTCAGTATCGATATCTTTTACCGTATATGTTGGGGATACTATTTGTATAGATTTATGATGATTCGGGGGCCAAATTAAATGCG                                                                                 >  SRR4302543.4286741/1‑94 (MQ=60)
               TAGTTAAAGTTTCAGTATCGATATCTTTTACCGTATATGTTGGGGATACTATTTGTATAGATTTATGATGATTCGGGGGCCAAATTAAATGCGA                                                                                <  SRR4302543.7336648/94‑1 (MQ=60)
                AGTTAAAGTTTCAGTATCGATATCTTTTACCGTATATGTTGGGGATACTATTTGTATAGATTTATGATGATTCGGGGGCCAAATTAAATGCGAG                                                                               >  SRR4302543.3208230/1‑94 (MQ=60)
                AGTTAAAGTTTCAGTATCGATATCTTTTACCGTATATGTTGGGGATACTATTTGTATAGATTTATGATGATTCGGGGGCCAAATTAAATGCGAG                                                                               >  SRR4302543.7173595/1‑94 (MQ=60)
                AGTTAAAGTTTCAGTATCGATATCTTTTACCGTATATGTTGGGGATACTATTTGTATAGATTTATGATGATTCGGGGGCCAAATTAAATGCGAG                                                                               >  SRR4302543.3278023/1‑94 (MQ=60)
                 GTTAAAGTTTCAGTATCGATATCTTTTACCGTATATGTTGGGGATACTATTTGTATAGATTTATGATGATTCGGGGGCCAAATTAAATGCGAGG                                                                              <  SRR4302543.7881413/94‑1 (MQ=60)
                 GTTAAAGTTTCAGTATCGATATCTTTTACCGTATATGTTGGGGATACTATTTGTATAGATTTATGATGATTCGGGGGCCAAATTAAATGCGAGG                                                                              <  SRR4302543.4762151/94‑1 (MQ=60)
                 GTTAAAGTTTCAGTATCGATATCTTTTACCGTATATGTTGGGGATACTATTTGTATAGATTTATGATGATTCGGGGGCCAAATTAAATGCGAGG                                                                              <  SRR4302543.2116033/94‑1 (MQ=60)
                  TTAAAGTTTCAGTATCGATATCTTTTACCGTATATGTTGGGGATACTATTTGTATAGATTTATGATGATTCGGGGGCCAAATTAAATGCGAGGG                                                                             >  SRR4302543.2882992/1‑94 (MQ=60)
                   taaagttgcaggatcggaagCTTTTACCGTATAGGTTGGGGATACTATTTGTATAGATTTAGGATGATTCGGGGGCCAAATTAAATGCGAGGGA                                                                            <  SRR4302543.526215/74‑1 (MQ=60)
                   TAAAGTTTCAGTATCGATATCTTTTACCGTATATGTTGGGGATACTATTTGTATAGATTTATGATGATTCGGGGGCCAAATTAAATGCGAGGGA                                                                            <  SRR4302543.526216/94‑1 (MQ=60)
                   TAAAGTTTCAGTATCGATATCTTTTACCGTATATGTTGGGGATACTATTTGTATAGATTTATGATGATTCGGGGGCCAAATTAAATGCGAGGGA                                                                            >  SRR4302543.3242531/1‑94 (MQ=60)
                    AAAGTTTCAGTATCGATATCTTTTACCGTATATGTTGGGGATACTATTTGTATAGATTTATGATGATTCGGGGGCCAAATTAAATGCGAGGGAT                                                                           <  SRR4302543.2591826/94‑1 (MQ=60)
                      AGTTTCAGTATCGATATCTTTTACCGTATATGTTGGGGATACTATTTGTATAGATTTATGATGATTCGGGGGCCAAATTAAATGCGAGGGATAT                                                                         >  SRR4302543.6282458/1‑94 (MQ=60)
                      AGTTTCAGTATCGATATCTTTTACCGTATATGTTGGGGATACTATTTGTATAGATTTATGATGATTCGGGGGCCAAATTAAATGCGAGGGATAT                                                                         <  SRR4302543.6303666/94‑1 (MQ=60)
                      AGTTTCAGTATCGATATCTTTTACCGTATATGTTGGGGATACTATTTGTATAGATTTATGATGATTCGGGGGCCAAATTAAATGCGAGGGATAT                                                                         <  SRR4302543.63449/94‑1 (MQ=60)
                      AGTTTCAGTATCGATATCTTTTACCGTATATGTTGGGGATACTATTTGTATAGATTTATGATGATTCGGGGGCAAAATTAAATGCGAGGGATAT                                                                         >  SRR4302543.6282457/1‑94 (MQ=60)
                        TTTCAGTATCGATATCTTTTACCGTATATGTTGGGGATACTATTTGTATAGATTTATGATGATTCGGGGGCCAAATTAAATGCGAGGGATATTC                                                                       >  SRR4302543.2802115/1‑94 (MQ=60)
                        TTTCAGTATCGATATCTTTTACCGTATATGTTGGGGATACTATTTCTATAGATTTATGATGATTCGGGGGCCAAATTCAATGCGAGGGCTATTC                                                                       >  SRR4302543.2936097/1‑94 (MQ=60)
                         TTCAGTATCGATATCTTTTACCGTATATGTTGGGGATACTATTTGTATAGATTTATGATGATTCGGGGGCCAAATTAAATGCGAGGGATATTCC                                                                      >  SRR4302543.5034213/1‑94 (MQ=60)
                         TTCAGTATCGATATCTTTTACCGTATATGTTGGGGATACTATTTGTATAGATTTATGATGATTCGGGGGCCAAATTAAATGCGAGGGATATTCC                                                                      >  SRR4302543.5034212/1‑94 (MQ=60)
                         TTCAGTATCGATATCTTTTACCGTATATGTTGGGGATACTATTTGTATAGATTTATGATGATTCGGGGGCCAAATTAAATGCGAGGGATATTCC                                                                      >  SRR4302543.1748304/1‑94 (MQ=60)
                          TCAGTATCGATATCTTTTACCGTATATGTTGGGGATACTATTTGTATAGATTTATGATGATTCGGGGGCCAAATTAAATGCGAGGGATATTCCG                                                                     >  SRR4302543.5010256/1‑94 (MQ=60)
                           CAGTATCGATATCTTTTACCGTATATGTTGGGGATACTATTTGTATAGATTTATGATGATTCGGGGGCCAAATTAAATGCGAGGGATATTCCGG                                                                    >  SRR4302543.5127406/1‑94 (MQ=60)
                            AGTATCGATATCTTTTACCGTATATGTTGGGGGTACTATTTGTATAGATTTATGATGATTCGGGGGCCAAATTAATTGCGAGGGATATTCCGGG                                                                   >  SRR4302543.2781741/1‑94 (MQ=60)
                            AGTATCGATATCTTTTACCGTATATGTTGGGGATACTATTTGTATAGATTTATGATGATTCGGGGGCCAAATTAAATGCGAGGGATATTCCGGA                                                                   >  SRR4302543.4706382/1‑94 (MQ=60)
                            AGTATCGATATCTTTTACCGTATATGTTGGGGATACTATTTGTATAGATTTATGATGATTCGGGGGCCAAATTAAATGCGAGGGATATTCCGGA                                                                   >  SRR4302543.3164675/1‑94 (MQ=60)
                             GTATCGATATCTTTTACCGTATATGTTGGGGATACTATTTGTATAGATTTATGATGATTCGGGGGCCAAATTAAATGCGAGGGATATTCCGGAG                                                                  <  SRR4302543.453496/94‑1 (MQ=60)
                             GTATCGATATCTTTTACCGTATATGTTGGGGATACTATTTGTATAGATTTATGATGATTCGGGGGCCAAATTAAATGCGAGGGATATTCCGGAG                                                                  >  SRR4302543.89506/1‑94 (MQ=60)
                             GTATCGATATCTTTTACCGTATATGTTGGGGATACTATTTGTATAGATTTATGATGATTCGGGGGCCAAATTAAATGCGAGGGATATTCCGGAG                                                                  >  SRR4302543.5161453/1‑94 (MQ=60)
                             GTATCGATATCTTTTACCGTATATGTTGGGGATACTATTTGTATAGATTTATGATGATTCGGGGGCCAAATTAAATGCGAGGGATATTCCGGAG                                                                  >  SRR4302543.1100216/1‑94 (MQ=60)
                             GTATCGATATCTTTTACCGTATATGTTGGGGATACTATTTGTATAGATTTATGATGATTCGGGGGCCAAATTAAATGCGAGGGATATTCCGGAG                                                                  >  SRR4302543.2548249/1‑94 (MQ=60)
                              TATCGATATCTTTTACCGTATATGTTGGGGATACTATTTGTATAGATTTATGATGATTCGGGGGCCAAATTAAATGCGAGGGATATTCCGGAGT                                                                 >  SRR4302543.1182724/1‑94 (MQ=60)
                               ATCGATATCTTTTACCGTATATGTTGGGGATACTATTTGTATAGATTTATGATGATTCGGGGGCCAAATTAAATGCGAGGGATATTCCGGAGTA                                                                >  SRR4302543.5859304/1‑94 (MQ=60)
                               ATCGATATCTTTTACCGTATATGTTGGGGATACTATTTGTATAGATTTATGATGATTCGGGGGCCAAATTAAATGCGAGGGATATTCCGGAGTA                                                                <  SRR4302543.5920649/94‑1 (MQ=60)
                               ATCGATATCTTTTACCGTATATGTTGGGGATACTATTTGTATAGATTTATGATGATTCGGGGGCCAAATTAAATGCGAGGGATATTCCGGAGTA                                                                <  SRR4302543.3214751/94‑1 (MQ=60)
                                TCGTTATCTTTTCCCGTATATGTTGGGGATACTATTTGTATAGATTTATGATGATTCGGGGGCCAAATTAAATGCGAGGGATATTCCGGAGTAC                                                               <  SRR4302543.7080499/94‑1 (MQ=60)
                                TCGATATCTTTTACCGTATATGTTGGGGATACTATTTGTATAGATTTATGATGATTCGGGGGCCAAATTAAATGCGAGGGATATTCCGGAGTAC                                                               >  SRR4302543.6752704/1‑94 (MQ=60)
                                TCGATATCTTTTACCGTATATGTTGGGGATACTATTTGTATAGATTTATGATGATTCGGGGGCCAAATTAAATGCGAGGGATATTCCGGAGTAC                                                               <  SRR4302543.7309828/94‑1 (MQ=60)
                                 CGATATCTTTTACCGTATATGTTGGGGATACTATTTGTATAGATTTATGATGATTCGGGGGCCAAATTAAATGCGAGGGATATTCCGGAGTACG                                                              >  SRR4302543.2710571/1‑94 (MQ=60)
                                 CGATATCTTTTACCGTATATGTTGGGGATACTATTTGTATAGATTTATGATGATTCGGGGGCCAAATTAAATGCGAGGGATATTCCGGAGTACG                                                              <  SRR4302543.2474228/94‑1 (MQ=60)
                                 CGATATCTTTTACCGTATATGTTGGGGATACTATTTGTATAGATTTATGATGATTCGGGGGCCAAATTAAATGCGAGGGATATTCCGGAGTACG                                                              >  SRR4302543.418680/1‑94 (MQ=60)
                                  GATATCTTTTACCGTATATGTTGGGGATACTATTTGTATAGATTTATGATGATTCGGGGGCCAAATTAAATGCGAGGGATATTCCGGAGTACGT                                                             <  SRR4302543.5358817/94‑1 (MQ=60)
                                   ATATCTTTTACCGTATATGTTGGGGATACTATTTGTATAGATTTATGATGATTCGGGGGCCAAATTAAATGCGAGGGATATTCCGGAGTACGTG                                                            >  SRR4302543.6110462/1‑94 (MQ=60)
                                   ATATCTTTTACCGTATATGTTGGGGATACTATTTGTATAGATTTATGATGATTCGGGGGCCAAATTAAATGCGAGGGATATTCCGGAGTACGTG                                                            >  SRR4302543.4511931/1‑94 (MQ=60)
                                   ATATCTTTTACCGTATATGTTGGGGATACTATTTGTATAGATTTATGATGATTCGGGGGCCAAATTAAATGCGAGGGATATTCCGGAGTACGTG                                                            <  SRR4302543.3242293/94‑1 (MQ=60)
                                    TATGTTTTACCGTATATGTTGGGGATACTATTTGTATAGATTTATGATGATTCGGGGGCCAAATTAAATGCGAGGGATATTCCGGAGTACGTGA                                                           <  SRR4302543.6186777/94‑1 (MQ=60)
                                     ATCTTTTACCGTATATGTTGGGGATACTATTTGTATAGATTTATGATGATTCGGGGGCCAAATTAAATGCGAGGGATATTGCGGAGTACGTGAA                                                          >  SRR4302543.1097692/1‑94 (MQ=60)
                                     ATCTTTTACCGTATATGTTGGGGATACTATTTGTATAGATTTATGATGATTCGGGGGCCAAATTAAATGCGAGGGATATTCCGGAGTACGTGAA                                                          >  SRR4302543.41619/1‑94 (MQ=60)
                                      TCTTTTACCGTATATGTTGGGGATACTATTTGTATAGATTTATGATGATTCGGGGGCCAAATTAAATGCGAGGGATATTCCGGAGTACGTGAAT                                                         >  SRR4302543.5235578/1‑94 (MQ=60)
                                       CTTTTACCGTATATGTTGTGGATACTATTTGTATAGATTTATGATGATTCGGGGGCCAAATTAAATGCGAGGGATATTCCGGAGTACGTGAATT                                                        >  SRR4302543.626365/1‑94 (MQ=60)
                                       CTTTTACCGTATATGTTGGGGATACTATTTGTATAGATTTATGATGATTCGGGGGCCAAATTAAATGCGAGGGATATTCCGGAGTACGTGAATT                                                        >  SRR4302543.7975368/1‑94 (MQ=60)
                                       CTTTTACCGTATATGTTGGGGATACTATTTGTATAGATTTATGATGATTCGGGGGCCAAATTAAATGCGAGGGATATTCCGGAGTACGTGAATT                                                        <  SRR4302543.5819188/94‑1 (MQ=60)
                                        TTTTACCGTATATGTTGGGGATACTATTTGTATAGATTTATGATGATTCGGGGGCCAAATTAAATGCGAGGGATATTCCGGAGTACGTGAATTA                                                       >  SRR4302543.1408239/1‑94 (MQ=60)
                                        TTTTACCGTATATGTTGGGGATACTATTTGTATAGATTTATGATGATTCGGGGGCCAAATTAAATGCGAGGGATATTCCGGAGTACGTGAATTA                                                       >  SRR4302543.3672845/1‑94 (MQ=60)
                                         TTTACCGTATATGTTGGGGATACTATTTGTATAGATTTATGATGATTCGGGGGCCAAATTAAATGCGAGGGATATTCCGGAGTACGTGAATTAG                                                      >  SRR4302543.7152338/1‑94 (MQ=60)
                                           TACCGTATATGTTGGGGATACTATTTGTATAGATTTATGATGATTCGGGGGCCAAATTAAATGCGAGGGATATTCCGGAGTACGTGAATTAGGG                                                    >  SRR4302543.7424907/1‑94 (MQ=60)
                                           TACCGTATATGTTGGGGATACTATTTGTATAGATTTATGATGATTCGGGGGCCAAATTAAATGCGAGGGATATTCCGGAGTACGTGAATTAGGG                                                    <  SRR4302543.6141266/94‑1 (MQ=60)
                                           TACCGTATATGTTGGGGATACTATTTGTATAGATTTAGGATGATACGGGGGCCAAATTAAATGCGAGGGATATTCCGGAGTACGTGAATTAGGG                                                    <  SRR4302543.7872994/94‑1 (MQ=60)
                                              CGTATATGTTGGGGATACTATTTGTATAGATTTATGATGATTCGGGGGCCAAATTAAATGCGAGGGATATTCCGGAGTACGTGAATTAGGGTAA                                                 >  SRR4302543.5435471/1‑94 (MQ=60)
                                               GTATATGTTGGGGATACTATTTGTATAGATTTATGATGATTCGGGGGCCAAATTAAATGCGAGGGATCTTCCGGAGTACGTGAATTAGGGTAAA                                                >  SRR4302543.2933618/1‑94 (MQ=60)
                                                TATATGTTGGGGATACTATTTGTATAGATTTATGATGATTCGGGGGCCAAATTAAATGCGAGGGATATTCCGGAGTACGTGAATTAGGGTAAAA                                               >  SRR4302543.4028914/1‑94 (MQ=60)
                                                TATATGTTGGGGATACTATTTGTATAGATTTATGATGATTCGGGGGCCAAATTAAATGCGAGGGATATTCCGGAGTACGTGAATTAGGGTAAAA                                               >  SRR4302543.3099879/1‑94 (MQ=60)
                                                TATATGTTGGGGATACTATTTGTATAGATTTATGATGATTCGGGGGCCAAATTAAATGCGAGGGATATTCCGGAGTACGTGAATTAGGGTAAAA                                               <  SRR4302543.3553860/94‑1 (MQ=60)
                                                 ATATGTTGGGGATACTATTTGTATAGATTTATGATGATTCGGGGGCCAAATTAAATGCGAGGGATATTCCGGAGTACGTGAATTAGGGTAAAAT                                              <  SRR4302543.120695/94‑1 (MQ=60)
                                                 ATATGTTGGGGATACTATTTGTATAGATTTATGATGATTCGGGGGCCAAATTAAATGCGAGGGATATTCCGGAGTACGTGAATTAGGGTAAAAT                                              <  SRR4302543.5130938/94‑1 (MQ=60)
                                                 ATATGTTGGGGATACTATTTGTATAGATTTATGATGATTCGGGGGCCAAATTAAATGCGAGGGATATTCCGGAGTACGTGAATTAGGGTAAAAT                                              <  SRR4302543.5698007/94‑1 (MQ=60)
                                                 ATATGTTGGGGATACTATTTGTATAGATTTATGATGATTCGGGGGCCAAATTAAATGCGAGGGATATTCCGGAGTACGTGAATTAGGGTAAAAT                                              <  SRR4302543.7982766/94‑1 (MQ=60)
                                                 ATATGTTGGGGATACTATTTGTATAGATTTATGATGATTCGGGGGCCAAATTAAATGCGAGGGATATTCCGGAGTACGTGAATTAGGGTAAAAT                                              <  SRR4302543.5738069/94‑1 (MQ=60)
                                                  TATGTTGGGGATACTATTTGTATAGATTTATGATGATTCGGGGGCCAAATTAAATGCGAGGGATATTCCGGAGTACGTGAATTAGGGTAAAATG                                             <  SRR4302543.2968190/94‑1 (MQ=60)
                                                  TATGTTGGGGATACTATTTGTATAGATTTATGATGATTCGGGGGCCAAATTAAATGCGAGGGATATTCCGGAGTACGTGAATTAGGGTAAAATG                                             <  SRR4302543.277888/94‑1 (MQ=60)
                                                   ATGTTGGGGATACTATTTGTATAGATTTATGATGATTCGGGGGCCAAATTAAATGCGAGGGATATTCCGGAGTACGTGAATTAGGGTAAAATGC                                            >  SRR4302543.5528332/1‑94 (MQ=60)
                                                   ATGTTGGGGATACTATTTGTATAGATTTATGATGATTCGGGGGCCAAATTAAATGCGAGGGATATTCCGGAGTACGTGAATTAGGGTAAAATGA                                            >  SRR4302543.256652/1‑94 (MQ=60)
                                                     GTTGGGGATACTATTTGTATAGATTTATGATGATTCGGGGGCCAAATTAAATGCGAGGGATATTCCGGAGTACGTGAATTAGGGTAAAATGCAA                                          <  SRR4302543.4203921/94‑1 (MQ=60)
                                                      TTGGGGATACTATTTGTATAGATTTATGATGATTCGGGGGCCAAATTAAATGCGAGGGATATTCCGGAGTACGTGAATTAGGGTAAAATGCAAG                                         <  SRR4302543.1454973/94‑1 (MQ=60)
                                                      TTGGGGATACTATTTGTATAGATTTATGATGATTCGGGGGCCAAATTAAATGCGAGGGATATTCCGGAGTACGTGAATTAGGGTAAAATGCAAG                                         <  SRR4302543.7567108/94‑1 (MQ=60)
                                                      TTGGGGATACTATTTGTATAGATTTATGATGATTCGGGGGCCAAATTAAATGCGAGGGATATTCCGGAGTACGTGAATTAGGGTAAAATGCAAG                                         <  SRR4302543.4124946/94‑1 (MQ=60)
                                                       TGGGGATACTATTTGTATAGATTTATGATGATTCGGGGGCCAAATTAAATGCGAGGGATATTCCGGAGTACGTGAATTAGGGTAAAATGCAAGC                                        >  SRR4302543.4976244/1‑94 (MQ=60)
                                                        GGGGATACTATTTGTATAGATTTATGATGATTCGGGGGCCAAATTAAATGCGAGGGATATTCCGGAGTACGTGAATTAGGGTAAAATGCAAGCG                                       <  SRR4302543.3080605/94‑1 (MQ=60)
                                                         GGGATACTATTTGTATAGATTTATGATGATTCGGGGGCCAAATTAAATGCGAGGGATATTCCGGAGTACGTGAATTAGGGTAAAATGCAAGCGT                                      <  SRR4302543.4683150/94‑1 (MQ=60)
                                                          GGATACTATTTGTATAGATTTATGATGATTCGGGGGCCAAATTAAATGCGAGGGATATTCCGGAGTACGTGAATTAGGGTAAAATGCAAGCGTT                                     >  SRR4302543.2133085/1‑94 (MQ=60)
                                                          GGATACTATTTGTATAGATTTATGATGATTCGGGGGCCAAATTAAATGCGAGGGATATTCCGGAGTACGTGAATTAGGGTAAAATGCAAGCGTT                                     <  SRR4302543.7084367/94‑1 (MQ=60)
                                                           GATACTATTTGTATAGATTTATGATGATTCGGGGGCCAAATTAAATGCGAGGGATATTCCGGAGTACGTGAATTAGGGTAAAATGCAAGCGTTG                                    <  SRR4302543.213713/94‑1 (MQ=60)
                                                           GATACTATTTGTATAGATTTATGATGATTCGGGGGCCAAATTAAATGCGAGGGATATTCCGGAGTACGTGAATTAGGGTAAAATGCAAGCGTTG                                    >  SRR4302543.3898256/1‑94 (MQ=60)
                                                           GATACTATTTGTATAGATTTATGATGATTCGGGGGCCAAATTAAATGCGAGGGATATTCCGGAGTACGTGAATTAGGGTAAAATGCAAGCGTTG                                    >  SRR4302543.1688426/1‑94 (MQ=60)
                                                           GATACTATTTGTATAGATTTATGATGATTCGGGGGCCAAATTAAATGCGAGGGATATTCCGGAGTACGTGAATTAGGGTAAAATGCAAGCGTTG                                    <  SRR4302543.4168530/94‑1 (MQ=60)
                                                            ATACTATTTGTATAGATTTATGATGATTCGGGGGCCAAATTAAATGCGAGGGATATTCCGGAGTACGTGAATTAGGGTAAAATGCAAGCGTTGG                                   <  SRR4302543.1025580/94‑1 (MQ=60)
                                                            ATACTATTTGTATAGATTTATGATGATTCGGGGGCCAAATTAAATGCGAGGGATATTCCGGAGTACGTGAATTAGGGTAAAATGCAAGCGTTGG                                   >  SRR4302543.1597589/1‑94 (MQ=60)
                                                            ATACTATTTGTATAGATTTATGATGATTCGGGGGCCAAATTAAATGCGAGGGATATTCCGGAGTACGTGAATTAGGGTAAAATGCAAGCGTTGG                                   >  SRR4302543.2556871/1‑94 (MQ=60)
                                                             TACTATTTGTATAGATTTATGATGATTCGGGGGCCAAATTAAATGCGAGGGATATTCCGGAGTACGTGAATTAGGGTAAAATGCAAGCGTTGGT                                  >  SRR4302543.7231459/1‑94 (MQ=60)
                                                              ACTATTTGTATAGATTTATGATGATTCGGGGGCCAAATTAAATGCGAGGGATATTCCGGAGTACGTGAATTAGGGTAAAATGCAAGCGTTGGTT                                 >  SRR4302543.5508756/1‑94 (MQ=60)
                                                                TATTTGTATAGATTTATGATGATTCGGGGGCCAAATTAAATGCGAGGGATATTCCGGAGTACGTGAATTAGGGTAAAATGCAAGCGTTGGTTTA                               >  SRR4302543.3330497/1‑94 (MQ=60)
                                                                TATTTGTATAGATTTATGATGATTCGGGGGCCAAATTAAATGCGAGGGATATTCCGGAGTACGTGAATTAGGGTAAAATGCAAGCGTTGGTTTA                               >  SRR4302543.1422039/1‑94 (MQ=60)
                                                                TATTTGTATAGATTTATGATGATTCGGGGGCCAAATTAAATGCGAGGGATATTCCGGAGTACGTGAATTAGGGTAAAATGCAAGCGTTGGTTTA                               >  SRR4302543.4607276/1‑94 (MQ=60)
                                                                TATGTGTATAGATTTATGATGATTCGGGGGCCAAATTAAATGCGAGGGATATTCCGGAGTACGTGAATTAGGGTAAAATGCAAGCGTTGGTTTA                               <  SRR4302543.2118848/94‑1 (MQ=60)
                                                                 ATTTGTATAGATTTATGATGATTCGGGGGCCAAATTAAATGCGAGGGATATTCCGGAGTACGTGAATTAGGGTAAAATGCAAGCGTTGGTTTAT                              <  SRR4302543.7714956/94‑1 (MQ=60)
                                                                 ATTTGTATAGATTTATGATGATTCGGGGGCCAAATTAAATGCGAGGGATATTCCGGAGTACGTGAATTAGGGTAAAATGCAAGCGTTGGTTTAT                              <  SRR4302543.764623/94‑1 (MQ=60)
                                                                 ATTTGTATAGATTTATGATGATTCGGGGGCCAAATTAAATGCGAGGGATATTCCGGAGTACGTGAATTAGGGTAAAATGCAAGCGTTGGTTTAT                              >  SRR4302543.6909328/1‑94 (MQ=60)
                                                                    TGTATAGATTTATGATGATTCGGGGGCCAAATTAAATGCGAGGGATATTCCGGAGTACGTGAATTAGGGTAAAATGCAAGCGTTGGTTTATGAT                           >  SRR4302543.2421975/1‑94 (MQ=60)
                                                                    TGTATAGATTTATGATGATTCGGGGGCCAAATTAAATGCGAGGGATATTCCGGAGTACGTGAATTAGGGTAAAATGCAAGCGTTGGTTTATGAT                           <  SRR4302543.5724923/94‑1 (MQ=60)
                                                                     GTATAGATTTATGATGATTCGGGGGCCAAATTAAATGCGAGGGATATTCCGGAGTACGTGAATTAGGGTAAAATGCAAGCGTTGGTTTATGATA                          <  SRR4302543.398729/94‑1 (MQ=60)
                                                                     GTATAGATTTATGATGATTCGGAGGCCAAATTAAATGCGAGGGATAGTCCGGAGTACGTGAATTAGGGTAAAATGCAAGCGTTGGTTTATGATA                          <  SRR4302543.398728/94‑1 (MQ=60)
                                                                      TATAGATTTATGATGATTCGGGGGCCAAATTAAATGCGAGGGATATTCCGGAGTACGTGAATTAGGGTAAAATGCAAGCGTTGGTTTATGATAA                         >  SRR4302543.479474/1‑94 (MQ=60)
                                                                      TATAGATTTATGATGATTCGGGGGCCAAATTAAATGCGAGGGATATTCCGGAGTACGTGAATTAGGGTAAAATGCAAGCGTTGGTTTATGATAA                         >  SRR4302543.2680716/1‑94 (MQ=60)
                                                                       ATAGATTTATGATGATTCGGGGGCCAAATTAAATGCGAGGGATATTCCGGAGTACGTGAATTAGGGTAAAATGCAAGCGTTGGTTTATGATAAG                        <  SRR4302543.4849677/94‑1 (MQ=60)
                                                                       ATAGATTTATGATGATTCGGGGGCCAAATTAAATGCGAGGGATATTCCGGAGTACGTGAATTAGGGTAAAATGCAAGCGTTGGTTTATGATAAG                        <  SRR4302543.4578418/94‑1 (MQ=60)
                                                                       ATAGATTTATGATGATTCGGGGGCCAAATTAAATGCGAGGGATATTCCGGAGTACGTGAATTAGGGTAAAATGCAAGCGTTGGTTTATGATAAG                        <  SRR4302543.7934487/94‑1 (MQ=60)
                                                                        ttaATTTATGATGATTTGGGGGCCAAATTAAATGCGAGGGATATTCCGGAGTACGTGAATTAGGGTAAAATGCAAGCGTTGGTTTATGATAAGC                       <  SRR4302543.1706550/91‑1 (MQ=60)
                                                                        TAGATTTATGATGATTCGGGGGCCAAATTAAATGCGAGGGATATTCCGGAGTACGTGAATTAGGGTAAAATGCAAGCGTTGGTTTATGATAAGC                       <  SRR4302543.1706551/94‑1 (MQ=60)
                                                                        TAGATTTATGATGATTCGGGGGCCAAATTAAATGCGAGGGATATTCCGGAGTACGTGAATTAGGGTAAAATGCAAGCGTTGGTTTATGATAAGC                       <  SRR4302543.7850137/94‑1 (MQ=60)
                                                                        TAGATTTATGATGATTCGGGGGCCAAATTAAATGCGAGGGATATTCCGGAGTACGTGAATTAGGGTAAAATGCAAGCGTTGGTTTATGATAAGC                       >  SRR4302543.4461270/1‑94 (MQ=60)
                                                                         AGATTTATGATGATTCGGGGGCCAAATTAAATGCGAGGGATATTCCGGAGTACGTGAATTAGGGTAAAATGCAAGCGTTGGTTTATGATAAGCC                      >  SRR4302543.2406290/1‑94 (MQ=60)
                                                                         AGATTTATGATGATTCGGGGGCCAAATTAAATGCGAGGGATATTCCGGAGTACGTGAATTAGGGTAAAATGCAAGCGTTGGTTTATGATAAGCC                      >  SRR4302543.3709341/1‑94 (MQ=60)
                                                                         AGATTTATGATGATTCGGGGGCCAAATTAAATGCGAGGGATATTCCGGAGTACGTGAATTAGGGTAAAATGCAAGCGTTGGTTTATGATAAGCC                      <  SRR4302543.6237473/94‑1 (MQ=60)
                                                                          GATTTATGATGATTCGGGGGCCAAATTAAATGCGAGGGATATTCCGGAGTACGTGAATTAGGGTAAAATGCAAGCGTTGGTTTATGATAAGCCG                     >  SRR4302543.7152158/1‑94 (MQ=60)
                                                                          GATTTATGATGATTCGGGGGCCAAATTAAATGCGAGGGATATTCCGGAGTACGTGAATTAGGGTAAAATGCAAGCGTTGGTTTATGATAAGCCG                     >  SRR4302543.4901699/1‑94 (MQ=60)
                                                                          GATTTATGATGATTCGGGGGCCAAATTAAATGCGAGGGATATTCCGGAGTACGTGAATTAGGGTAAAATGCAAGCGTTGGTTTATGATAAGCCG                     <  SRR4302543.5443715/94‑1 (MQ=60)
                                                                          GATTTATGATGATTCGGGGGCCAAATTAAATGCGAGGGATATTCCGGAGTACGTGAATTAGGGTAAAATGCAAGCGTTGGTTTATGATAAGCCG                     >  SRR4302543.1870859/1‑94 (MQ=60)
                                                                           ATTTATGATGATTCGGGGGCCAAATTAAATGCGAGGGATATTCCGGAGTACGTGAATTAGGGTAAAATGCAAGCGTTGGTTTATGATAAGCCGC                    >  SRR4302543.3622158/1‑94 (MQ=60)
                                                                           ATTTATGATGATTCGGGGGCCAAATTAAATGCGAGGGATATTCCGGAGTACGTGAATTAGGGTAAAATGCAAGCGTTGGGTTATGATAAGCCGC                    >  SRR4302543.4697146/1‑94 (MQ=60)
                                                                             TTATGATGATTCGGGGGCCAAATTAAATGCGAGGGATATTCCGGAGTACGTGAATTAGGGTAAAATGCAAGCGTTGGTTTATGATAAGCCGCAG                  <  SRR4302543.3796335/94‑1 (MQ=60)
                                                                             TTATGATGATTCGGGGGCCAAATTAAATGCGAGGGATATTCCGGAGTACGTGAATTAGGGTAAAATGCAAGCGTTGGTTTATGATAAGCCGCAG                  <  SRR4302543.3796336/94‑1 (MQ=60)
                                                                             TTATGATGATTCGGGGGCCAAATTAAATGCGAGGGATATTCCGGAGTACGTGAATTAGGGTAAAATGCAAGCGTTGGTTTATGATAAGCCGCAG                  >  SRR4302543.2063772/1‑94 (MQ=60)
                                                                             TTATGATGATTCGGGGGCCAAATTAAATGCGAGGGATATTCCGGAGTACGTGAATTAGGGTAAAATGCAAGCGTTGGTTTATGATAAGCCGCAG                  <  SRR4302543.232074/94‑1 (MQ=60)
                                                                              TATGATGATTCGGGGGCCAAATTAAATGCGAGGGATATTCCGGAGTACGTGAATTAGGGTAAAATGCAAGCGTTGGTTTATGATAAGCCGCAGC                 <  SRR4302543.2042382/94‑1 (MQ=60)
                                                                               ATGATGATTCGGGGGCCAAATTAAATGCGAGGGATATTCCGGAGTACGTGAATTAGGGTAAAATGCAAGCGTTGGTTTATGATAAGTCGCAGCG                >  SRR4302543.4859612/1‑94 (MQ=60)
                                                                               ATGATGATTCGGGGGCCAAATTAAATGCGAGGGATATTCCGGAGTACGTGAATTAGGGTAAAATGCAAGCGTTGGTTTATGATAAGCCGCAGCG                >  SRR4302543.1671307/1‑94 (MQ=60)
                                                                               ATGATGATTCGGGGGCCAAATTAAATGCGAGGGATATTCCGGAGTACGTGAATTAGGGTAAAATGCAAGCGTTGGTTTATGATAAGCCGCAGCG                >  SRR4302543.3807274/1‑94 (MQ=60)
                                                                               ATGATGATTCGGGGGCCAAATTAAATGCGAGGGATATTCCGGAGTACGTGAATTAGGGTAAAATGCAAGCGTTGGTTTATGATAAGCCGCAGCG                >  SRR4302543.5916104/1‑94 (MQ=60)
                                                                                TGATGATTCGGGGGCCAAATTAAATGCGAGGGATATTCCGGAGTACGTGAATTAGGGTAAAATGCAAGCGTTGGTTTATGATAAGCCGCAGCGA               >  SRR4302543.731731/1‑94 (MQ=60)
                                                                                TGATGATTCGGGGGCCAAATTAAATGCGAGGGATATTCCGGAGTACGTGAATTAGGGTAAAATGCAAGCGTTGGTTTATGATAAGCCGCAGCGA               >  SRR4302543.4193576/1‑94 (MQ=60)
                                                                                 GATGATTCGGGGGCCAAATTAAATGCGAGGGATATTCCGGAGTACGTGAATTAGGGTAAAATGCAAGCGTTGGTTTATGATAAGCCGCAGCGAT              <  SRR4302543.7389457/94‑1 (MQ=60)
                                                                                  ATGATTCGGGGGCCAAATTAAATGCGAGGGATATTCCGGAGTACGTGAATTAGGGTAAAATGCAAGCGTTGGTTTATGATAAGCCGCAGCGATA             <  SRR4302543.1276651/94‑1 (MQ=60)
                                                                                   TGATTCGGGGGCCAAATTAAATGCGAGGGATATTCCGGAGTACGTGAATTAGGGTAAAATGCAAGCGTTGGTTTATGATAAGCCGCAGCGATAT            >  SRR4302543.4476928/1‑94 (MQ=60)
                                                                                   TGATTCGGGGGCCAAATTAAATGCGAGGGATATTCCGGAGTACGTGAATTAGGGTAAAATGCAAGCGTTGGTTTATGATAAGCCGCAGCGATAT            <  SRR4302543.896057/94‑1 (MQ=60)
                                                                                    GATTCGGGGGCCAAATTAAATGCGAGGGATATTCCGGAGTACGTGAATTAGGGTAAAATGCAAGCGTTGGTTTATGATAAGCCGCAGCGATATG           <  SRR4302543.5111754/94‑1 (MQ=60)
                                                                                    GATTCGGGGGCCAAATTAAATGCGAGGGATATTCCGGAGTACGTGAATTAGGGTAAAATGCAAGCGTTGGTTTATGATAAGCCGCAGCGATATG           >  SRR4302543.2805770/1‑94 (MQ=60)
                                                                                    GATTCGGGGGCCAAATTAAATGCGAGGGATATTCCGGAGTACGTGAATTAGGGTAAAATGCAAGCGTTGGTTTATGATAAGCCGCAGCGATATG           <  SRR4302543.2892639/94‑1 (MQ=60)
                                                                                     ATTCGGGGGCCAAATTAAATGCGAGGGATATTCCGGAGTACGTGAATTAGGGTAAAATGCAAGCGTTGGTTTATGATAAGCCGCAGCGATATGA          <  SRR4302543.2017389/94‑1 (MQ=60)
                                                                                      TTCGGGGGCCAAATTAAATGCGAGGGATATTCCGGAGTACGTGAATTAGGGTAAAATGCAAGCGTTGGTTTATGATAAGCCGCAGCGATATGAA         <  SRR4302543.5773514/94‑1 (MQ=60)
                                                                                      TTCGGGGGCCAAATTAAATGCGAGGGATATTCCGGAGTACGTGAATTAGGGTAAAATGCAAGCGTTGGTTTATGATAAGCCGCAGCGATATGAA         >  SRR4302543.7806739/1‑94 (MQ=60)
                                                                                      TTCGGGGGCCAAATTAAATGCGAGGGATATTCCGGAGTACGTGAATTAGGGTAAAATGCAAGCGTTGGTTTATGATAAGCCGCAGCGATATGAA         <  SRR4302543.6449593/94‑1 (MQ=60)
                                                                                       TCGGGGGCCAAATTAAATGCGAGGGATATTCCGGAGTACGTGAATTAGGGTAAAATGCAAGCGTTGGTTTATGATAAGCCGCAGCGATATGAAC        >  SRR4302543.2640505/1‑94 (MQ=60)
                                                                                       TCGGGGGCCAAATTAAATGCGAGGGATATTCCGGAGTACGTGAATTAGGGTAAAATGCAAGCGTTGGTTTATGATAAGCCGCAGCGATATGAAC        >  SRR4302543.2640506/1‑94 (MQ=60)
                                                                                       TCGGGGGCCAAATTAAATGCGAGGGATATTCCGGAGTACGTGAATTAGGGTAAAATGCAAGCGTTGGTTTATGATAAGCCGCAGCGATATGAAC        >  SRR4302543.3425056/1‑94 (MQ=60)
                                                                                        CGGGGGCCAAATTAAATGCGAGGGATATTCCGGAGTACGTGAATTAGGGTAAAATGCAAGCGTTGGTTTATGATAAGCCGCAGCGATATGAACA       <  SRR4302543.69005/94‑1 (MQ=60)
                                                                                        CGGGGGCCAAATTAAATGCGAGGGATATTCCGGAGTACGTGAATTAGGGTAAAATGCAAGCGTTGGTTTATGATAAGCCGCAGCGATATGAACA       >  SRR4302543.6188651/1‑94 (MQ=60)
                                                                                         GGGGGCCAAATTAAATGCGAGGGATATTCCGGAGTACGTGAATTAGGGTAAAATGCAAGCGTTGGTTTATGATAAGCCGCAGCGATATGAACAA      >  SRR4302543.2859015/1‑94 (MQ=60)
                                                                                         GGGGGCCAAATTAAATGCGAGGGATATTCCGGAGTACGTGAATTAGGGTAAAATGCAAGCGTTGGTTTATGATAAGCCGCAGCGATATGAACAA      >  SRR4302543.1808832/1‑94 (MQ=60)
                                                                                          GGGGCCAAATTAAATGCGAGGGATATTCCGGAGTACGTGAATTAGGGTAAAATGCAAGCGTTGGTTTATGATAAGTCGCAGCGATATGAACAAG     >  SRR4302543.2813873/1‑94 (MQ=60)
                                                                                          GGGGCCAAATTAAATGCGAGGGATATTCCGGAGTACGTGAATTAGGGTAAAATGCAAGCGTTGGTTTATGATAAGTCGCAGCGATATGAACAAG     >  SRR4302543.5219467/1‑94 (MQ=60)
                                                                                          GGGGCCAAATTAAATGCGAGGGATATTCCGGAGTACGTGAATTAGGGTAAAATGCAAGCGTTGGTTTATGATAAGCCGCAGCGATATGAACAAG     >  SRR4302543.6228649/1‑94 (MQ=60)
                                                                                          GGGGCCAAATTAAATGCGAGGGATATTCCGGAGTACGTGAATTAGGGTAAAATGCAAGCGTTGGTTTATGATAAGCCGCAGCGATATGAACAAG     <  SRR4302543.6450674/94‑1 (MQ=60)
                                                                                          GGGGCCAAATTAAATGCGAGGGATATTCCGGAGTACGTGAATTAGGGTAAAATGCAAGCGTTGGTTTATGATAAGCCGCAGCGATATGAACAAG     <  SRR4302543.5130130/94‑1 (MQ=60)
                                                                                            GGCCAAATTAAATGCGAGGGATATTCCGGAGTACGTGAATTAGGGTAAAATGCAAGCGTTGGTTTATGATAAGCCGCAGCGATATGAACAAGAG   <  SRR4302543.1517163/94‑1 (MQ=60)
                                                                                            GGCCAAATTAAATGCGAGGGATATTCCGGAGTACGTGAATTAGGGTAAAATGCAAGCGTTGGTTTATGATAAGCCGCAGCGATATGAACAAGAG   >  SRR4302543.7027709/1‑94 (MQ=60)
                                                                                             GCCAAATTAAATGCGAGGGATATTCCGGAGTACGTGAATTAGGGTAAAATGCAAGCGTTGGTTTATGATAAGCCGCAGCGATATGAACAAGAGC  >  SRR4302543.3403082/1‑94 (MQ=60)
                                                                                             GCCAAATTAAATGCGAGGGATATTCCGGAGTACGTGAATTAGGGTAAAATGCAAGCGTTGGTTTATGATAAGCCGCAGCGATATGAACAAGAGC  <  SRR4302543.5975028/94‑1 (MQ=60)
                                                                                             GCCAAATTAAATGCGAGGGATATTCCGGAGTACGTGAATTAGGGTAAAATGCAAGCGTTGGTTTATGATAAGCCGCAGCGATATGAACAAGAGC  <  SRR4302543.1199091/94‑1 (MQ=60)
                                                                                             GCCAAATTAAATGCGAGGGATATTCCGGAGTACGTGAATTAGGGTAAAATGCAAGCGTTGGTTTATGATAAGCCGCAGCGATATGAACAAGAGC  >  SRR4302543.6942400/1‑94 (MQ=60)
                                                                                             |                                                                                             
ATCTCTTTACTGAATTAGTTAAAGTTTCAGTATCGATATCTTTTACCGTATATGTTGGGGATACTATTTGTATAGATTTATGATGATTCGGGGACCAAATTAAATGCGAGGGATATTCCGGAGTACGTGAATTAGGGTAAAATGCAAGCGTTGGTTTATGATAAGCCGCAGCGATATGAACAAGAGC  >  NC_000913/3795889‑3796075

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: