Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I1 R1 1696 279.3 15874187 97.8% 15524954 93.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,812,423 T→C R101R (CGT→CGC)  b3641 → putative transcriptional regulator

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,812,4230TC100.0% 1466.3 / NA 462R101R (CGT→CGC) b3641putative transcriptional regulator
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base C (223/239);  total (223/239)

Only 100 of 481 total aligned reads displayed.

TACTCGCATCAACCTGATTCTGAAAGATGAGAAAGACACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGTAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAGGATCGCCTGCAAGGGCGCATCAACCAGCTGTTCGAGCG  >  NC_000913/3812333‑3812512
                                                                                          |                                                                                         
tgcTCGCATCCACCTGATTCTGAAAGATGATAAAGACACCACAGCGCGCCTGCTGCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCaa                                                                                         <  1:1739610/91‑1 (MQ=255)
tACTCGCATCACCCTGATTCTGAAAGATGAGAAAGACACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCaa                                                                                         <  2:1578799/93‑1 (MQ=255)
tACTAGCATCAACCTGATTCTGAAAGATGAGAAAGACACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCaa                                                                                         <  1:4011055/93‑1 (MQ=255)
 aCTCGCATCAACCTGATTCTGAAAGATGAGAAAGACACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAAt                                                                                        >  1:6406493/1‑93 (MQ=255)
  cTCGCATCAACCTGATTCTGAAAGATGAGAAAGACACCCCAGCGCGCCTGCGTCTGATTGTGCTGCTCCTTCTCGGTTTTGGTGAGCGCAATc                                                                                       <  1:99021/93‑1 (MQ=255)
   tCGCATCAGCCTGATTCTGAAAGATGAGAAAGACACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATcc                                                                                      <  1:691139/93‑1 (MQ=255)
   tCGCATCAACCTGATTCTGAAAGATGAGAAAGACACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATcc                                                                                      >  1:50104/1‑93 (MQ=255)
    cgaaTCAACCTTATTCTGAAAGATGAGAAAGACACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCt                                                                                     <  1:1636709/90‑1 (MQ=255)
    cGCATCAACCTGATTCTGAAAGATGAGAAAGACACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCt                                                                                     <  1:6022346/93‑1 (MQ=255)
       aTCAACCTGATTCTGAAAGATGAGAAAGACACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGc                                                                                  >  1:3617302/1‑93 (MQ=255)
        tCAACCTGATTCTGAAAGATGAGAAAGACACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGcc                                                                                 >  2:3476449/1‑93 (MQ=255)
        tCAACCTGATTCTGAAAGATGAGAAAGACACCACAGCGCGCCTGCGTCTGATTGTGTTCCTGCTGCTAGGCTTTTGAGCACGCAATTCTGGcc                                                                                 >  2:3730309/1‑93 (MQ=255)
         cAACCTGATTCTGAAAGATGAGAAAGACACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCt                                                                                <  1:4450677/93‑1 (MQ=255)
          aaCCTGATTCTGAAAGATGAGAAAGACACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTg                                                                               >  2:798759/1‑93 (MQ=255)
          aaCCTGATTCTGAAAGATGAGAAAGACACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTg                                                                               >  1:5952679/1‑93 (MQ=255)
            ccTGATTCTGAAAGATGAGAAAGACACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGAc                                                                             >  2:6439048/1‑93 (MQ=255)
            ccTGATTCTGAAAGATGAGAAAGACACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTAAGCGCAATCCTGGCCTGAc                                                                             <  1:1780182/93‑1 (MQ=255)
             cTGATTCTGAAAGATGAGAAAGACACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGAcc                                                                            >  2:1061800/1‑93 (MQ=255)
             cTGATTCTGAAAGATGAGAAAGACACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGAcc                                                                            >  2:2333827/1‑93 (MQ=255)
             cTGATTCTGAAAGATGAGAAAGACACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGGTTTGGTGAGCGCAATCCTGGCCTGAcc                                                                            >  1:6206996/1‑93 (MQ=255)
              tGATTCTGAAAGATGAGAGAGACACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGAccc                                                                           >  1:4358635/1‑93 (MQ=255)
              tGATTCTGAAAGATGAGAAAGACACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGAccc                                                                           >  2:479012/1‑93 (MQ=255)
              tGATTCTGAAAGATGAGAAAGACACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGAccc                                                                           >  2:6075423/1‑93 (MQ=255)
               gATTCTGAAAGATGAGAAAGACACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCg                                                                          >  1:5592543/1‑93 (MQ=255)
               gATTCTGAAAGATGAGAAAGACACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCg                                                                          >  1:1022228/1‑93 (MQ=255)
                 ttCTGAAAGATGAGAAAGACACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCa                                                                        >  1:2809352/1‑93 (MQ=255)
                 ttCTGAAAGATGAGAAAGACACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCa                                                                        <  2:6561257/93‑1 (MQ=255)
                 ttCTGAAAGATGAGAAAGACACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCa                                                                        >  1:2055390/1‑93 (MQ=255)
                  tCTGAAAGATGAGAAAGACACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCAt                                                                       >  2:3926800/1‑93 (MQ=255)
                    tGAAAGATGAGAAAGACACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATcc                                                                     >  1:1460019/1‑93 (MQ=255)
                     gAAAGATGAGAAAGACACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCt                                                                    >  1:7245036/1‑93 (MQ=255)
                       aaGATGAGAAAGACACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGGGAGCGCAATCCTGGGCTCACCCGCATCCTct                                                                  >  2:3278589/1‑92 (MQ=255)
                        aGATGAGAAAGACACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCAc                                                                 <  1:536431/93‑1 (MQ=255)
                         gATGAGAAAGACACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACt                                                                >  1:5746542/1‑93 (MQ=255)
                         gATGAGAAAGACACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATACTCACt                                                                >  1:3574039/1‑93 (MQ=255)
                          aTGAGAAAGACACCACAGCGCGCTTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTg                                                               <  2:4292491/93‑1 (MQ=255)
                           tGAGAAAGACACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTgg                                                              >  1:586182/1‑93 (MQ=255)
                           tGAGAAAGACACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTgg                                                              >  2:2474050/1‑93 (MQ=255)
                            gagaAAGACACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGt                                                             <  1:4096797/93‑1 (MQ=255)
                            gagaAAGACACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGt                                                             <  2:5609701/93‑1 (MQ=255)
                              gaAAGACACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCa                                                           <  1:1912839/93‑1 (MQ=255)
                              gaAAGACACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCa                                                           <  2:495766/93‑1 (MQ=255)
                               aaaGACACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCAt                                                          >  2:6693843/1‑93 (MQ=255)
                                aaGACACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATg                                                         >  1:7864963/1‑93 (MQ=255)
                                 aGACACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATgc                                                        <  1:7666916/93‑1 (MQ=255)
                                  gACACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATgcg                                                       >  2:6223984/1‑93 (MQ=255)
                                   acacCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATgcgc                                                      >  2:5069873/1‑93 (MQ=255)
                                    caccacAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCt                                                     <  2:7373630/93‑1 (MQ=255)
                                     accacAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTa                                                    >  1:4724645/1‑93 (MQ=255)
                                      ccacAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTaa                                                   >  1:3779791/1‑93 (MQ=255)
                                      ccacAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTaa                                                   >  1:7910810/1‑93 (MQ=255)
                                       cacaGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAAt                                                  <  1:3101994/93‑1 (MQ=255)
                                       cacaGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAAt                                                  <  2:7655206/93‑1 (MQ=255)
                                       cacaGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAAt                                                  <  1:5283197/93‑1 (MQ=255)
                                       cacaGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAAt                                                  <  2:1407204/93‑1 (MQ=255)
                                        acaGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAAtt                                                 >  1:2641265/1‑92 (MQ=255)
                                          aGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATGtt                                               <  2:3074190/93‑1 (MQ=255)
                                          aGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATGtt                                               <  2:2113113/93‑1 (MQ=255)
                                          aGCGCGCCTGCGTCTGATGTTGTTGCTGCTTCTCGGGTTTGGTGAGCGCAATCGTGGCCTGACCGGCATCCTCACTGGTCATGCGCTAAGGtt                                               <  2:2609619/93‑1 (MQ=255)
                                           gcgcgcCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATGttt                                              <  2:7823721/93‑1 (MQ=255)
                                             gcgcCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGa                                            <  1:7467398/93‑1 (MQ=255)
                                              cgcCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGaa                                           <  1:2466467/93‑1 (MQ=255)
                                                ccTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACa                                         >  2:573855/1‑93 (MQ=255)
                                                ccTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACa                                         <  2:4446206/93‑1 (MQ=255)
                                                 cTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTTATGTTTGAACAg                                        >  2:4039965/1‑93 (MQ=255)
                                                 cTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAg                                        >  1:4816837/1‑93 (MQ=255)
                                                 cTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAg                                        <  1:886644/93‑1 (MQ=255)
                                                  tGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAgg                                       >  2:5230405/1‑93 (MQ=255)
                                                    cGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCCCTGGTCATGCGCTAATGTTTGAACAGGAt                                     <  1:6694186/93‑1 (MQ=255)
                                                     gTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAGGATc                                    <  2:750568/93‑1 (MQ=255)
                                                     gTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAGGATc                                    >  2:4656943/1‑93 (MQ=255)
                                                      tCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAGGATCg                                   >  2:1524534/1‑93 (MQ=255)
                                                      tCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAGGATCg                                   >  2:1930471/1‑93 (MQ=255)
                                                         gATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAGGATCGCCt                                >  2:2263523/1‑93 (MQ=255)
                                                         gATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAGGATCGCCt                                >  2:2934488/1‑93 (MQ=255)
                                                           ttGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAGGATCGCCTGc                              <  1:1138009/93‑1 (MQ=255)
                                                            tgtgTTGCTTCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAGGATCGCCTGCa                             <  1:2733040/93‑1 (MQ=255)
                                                             gtgtTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAGGATCGCCTGCaa                            >  1:1245593/1‑93 (MQ=255)
                                                              tgtTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAGGATCGCCTGCAAg                           <  2:4149487/93‑1 (MQ=255)
                                                              tgtTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAGGATCGCCTGCAAg                           <  1:6866273/93‑1 (MQ=255)
                                                               gtTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAGGATCGCCTGCAAgg                          >  1:5047987/1‑93 (MQ=255)
                                                                 tgctgcTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAGGATCGCCTGCAAGGgc                        >  2:4580073/1‑93 (MQ=255)
                                                                  gctgctTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAGGATCGCCTGCAAGGgcg                       >  2:5528218/1‑93 (MQ=255)
                                                                    tgctTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAGGATCGCCTGCAAGGGCGCa                     <  2:7073175/93‑1 (MQ=255)
                                                                    tgctTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAGGATCGCCTGCAAGGGCGCa                     <  1:1549934/93‑1 (MQ=255)
                                                                      ctTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAGGATCGCCTGCAAGGGCGCATc                   <  1:7307211/93‑1 (MQ=255)
                                                                        tctcGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAGGATCGCCTGCAAGGGCGCATCaa                 <  1:2208270/93‑1 (MQ=255)
                                                                          tcGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAGGATCGCCTGCAAGGGCGCATCAAcc               <  1:2946647/93‑1 (MQ=255)
                                                                          tcGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAGGATCGCCTGCAAGGGCGCATCAAcc               >  1:6772526/1‑93 (MQ=255)
                                                                           cGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAGGATCGCCTGCAAGGGCGCATCAACCa              <  1:2298460/93‑1 (MQ=255)
                                                                             gTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAGGATCGCCTGCAAGGGCGCATCAACCAGc            >  2:2776154/1‑93 (MQ=255)
                                                                              ttttGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAGGATCGCCTGCAAGGGCGCATCAACCAGCt           >  1:7805301/1‑93 (MQ=255)
                                                                               tttGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAGGATCGCCTGCAAGGGCGCATCAACCAGCTg          <  2:59802/93‑1 (MQ=255)
                                                                               tttGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAGGATCGCCTGCAAGGGCGCATCAACCAGCTg          >  2:1173390/1‑93 (MQ=255)
                                                                               tttGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAGGATCGCCTGCAAGGGCGCATCAACCAGCTg          <  1:4296611/93‑1 (MQ=255)
                                                                                ttGGTGAGCGCAATCCTGGTCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAGGATCGCCTGCAAGGGCGCATCAACCAGCTGt         <  1:4496719/93‑1 (MQ=255)
                                                                                ttGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAGGATCGCCTGCAAGGGCGCATCAACCAGCTGt         <  1:3841535/93‑1 (MQ=255)
                                                                                     gAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAGGATCGCCTGCAAGGGCGCATCAACCAGCTGTTCGAg    >  1:7129672/1‑93 (MQ=255)
                                                                                       gcgcAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAGGATCGCCTGCAAGGGCGCATCAACCAGCTGTTCGAGCg  <  2:7216609/93‑1 (MQ=255)
                                                                                       gcgcAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAGGATCGCCTGCAAGGGCGCATCAACCAGCTGTTCGAGCg  >  1:2846082/1‑93 (MQ=255)
                                                                                          |                                                                                         
TACTCGCATCAACCTGATTCTGAAAGATGAGAAAGACACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGTAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAGGATCGCCTGCAAGGGCGCATCAACCAGCTGTTCGAGCG  >  NC_000913/3812333‑3812512

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

BRESEQ :: bam2aln output Only 200 of 288 total aligned reads displayed.
GATTACTCGCATCAACCTGATTCTGAAAGATGAGAAAGACACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGTAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAGGATCGCCTGCAAGGGCGCATCAACCAGCTGTTCGAGCGTATT  >  NC_000913/3812330‑3812516
                                                                                             |                                                                                             
 ATTACTCGCATCAACCTGATTCTGAAAGATGAGAAAGACACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCA                                                                                              >  SRR4302543.5411715/1‑94 (MQ=60)
 ATTACTCGCATCAACCTGATTCTGAAAGATGAGAAAGACACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCA                                                                                              >  SRR4302543.7356239/1‑94 (MQ=60)
 ATTACTCGCATCAACCTGATTCTGAAAGATGAGAAAGACACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCA                                                                                              <  SRR4302543.6590059/94‑1 (MQ=60)
   TACTCGCATCAACCTGATTCTGAAAGATGAGAAAGACACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAAT                                                                                            >  SRR4302543.2859720/1‑94 (MQ=60)
   TACTCGCATCAACCTGATTCTGAAAGATGAGAAAGACACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAAT                                                                                            <  SRR4302543.850921/94‑1 (MQ=60)
   TACTCGCATCAACCTGATTCTGAAAGATGAGAAAGACACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAAT                                                                                            <  SRR4302543.7942857/94‑1 (MQ=60)
   TACTCGCATCAACCTGATTCTGAAAGATGAGAAAGACACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAAT                                                                                            >  SRR4302543.6466827/1‑94 (MQ=60)
   TACTCGCATCAACCTGATTCTGAAAGATGAGAAAGACACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAAT                                                                                            >  SRR4302543.4462390/1‑94 (MQ=60)
   TACTAGCATCAACCTGATTCTGAAAGATGAGAAAGACACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAAT                                                                                            <  SRR4302543.4046862/94‑1 (MQ=60)
    GCTCGCATCAACCTGATTCTGAAAGATGAGAAAGACACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATC                                                                                           <  SRR4302543.4832208/94‑1 (MQ=60)
    ACTCGCATCAACCTGATTCTGAAAGATGAGAAAGACACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATC                                                                                           <  SRR4302543.7640941/94‑1 (MQ=60)
    ACTCGCATCAACCTGATTCTGAAAGATGAGAAAGACACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATC                                                                                           <  SRR4302543.731991/94‑1 (MQ=60)
    ACTCGCATCAACCTGATTCTGAAAGATGAGAAAGACACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATC                                                                                           <  SRR4302543.4832207/94‑1 (MQ=60)
    ACTCGCATCAACCTGATTCTGAAAGATGAGAAAGACACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATC                                                                                           >  SRR4302543.1962199/1‑94 (MQ=60)
     CTCGCATCAACCTGATTCTGAAAGATGAGAAAGACACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCC                                                                                          <  SRR4302543.99941/94‑1 (MQ=60)
     CTCGCATCAACCTGATTCTGAAAGATGAGAAAGACACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCC                                                                                          >  SRR4302543.5265862/1‑94 (MQ=60)
      TCGCATCAGCCTGATTCTGAAAGATGAGAAAGACACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCT                                                                                         <  SRR4302543.697481/94‑1 (MQ=60)
      TCGCATCAACCTGATTCTGAAAGATGAGAAAGACACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCT                                                                                         <  SRR4302543.3650350/94‑1 (MQ=60)
       CGCATCAACCTGATTCTGAAAGATGAGAAAGACACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTG                                                                                        <  SRR4302543.3559314/94‑1 (MQ=60)
       CGCATCAACCTGATTCTGAAAGATGAGAAAGACACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTG                                                                                        >  SRR4302543.24660/1‑94 (MQ=60)
       CGCATCAACCTGATTCTGAAAGATGAGAAAGACACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTG                                                                                        >  SRR4302543.5714153/1‑94 (MQ=60)
       CGCATCAACCTGATTCTGAAAGATGAGAAAGACACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTG                                                                                        <  SRR4302543.6078272/94‑1 (MQ=60)
       CGAATCAACCTTATTCTGAAAGATGAGAAAGACACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTG                                                                                        <  SRR4302543.1651314/94‑1 (MQ=60)
        GCATCAACCTGATTCTGAAAGATGAGAAAGACACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGG                                                                                       >  SRR4302543.1657468/1‑94 (MQ=60)
         CATCAACCTGATTCTGAAAGATGAGAAAGACACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGC                                                                                      >  SRR4302543.3649186/1‑94 (MQ=60)
          ATCAACCTGATTCTGAAAGATGAGAAAGACACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCC                                                                                     >  SRR4302543.931242/1‑94 (MQ=60)
          ATCAACCTGATTCTGAAAGATGAGAAAGACACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCC                                                                                     <  SRR4302543.1242428/94‑1 (MQ=60)
          ATCAACCTGATTCTGAAAGATGAGAAAGACACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCC                                                                                     >  SRR4302543.6619305/1‑94 (MQ=60)
           TCAACCTGATTCTGAAAGATGAGAAAGACACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCT                                                                                    <  SRR4302543.5983117/94‑1 (MQ=60)
           TCAACCTGATTCTGAAAGATGAGAAAGACACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCT                                                                                    <  SRR4302543.5069046/94‑1 (MQ=60)
            CAACCTGATTCTGAAAGATGAGAAAGACACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTG                                                                                   >  SRR4302543.6007156/1‑94 (MQ=60)
            CAACCTGATTCTGAAAGATGAGAAAGACACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTG                                                                                   <  SRR4302543.2689958/94‑1 (MQ=60)
             AACCTGATTCTGAAAGATGAGAAAGACACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGA                                                                                  >  SRR4302543.696142/1‑94 (MQ=60)
             AACCTGATTCTGAAAGATGAGAAAGACACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGA                                                                                  >  SRR4302543.5347771/1‑94 (MQ=60)
              ACCTGATTCTGAAAGATGAGAAAGACACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGAC                                                                                 >  SRR4302543.2176609/1‑94 (MQ=60)
               CCTGATTCTGAAAGATGAGAAAGACACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACC                                                                                >  SRR4302543.6943001/1‑94 (MQ=60)
               CCTGATTCTGAAAGATGAGAAAGACACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACC                                                                                <  SRR4302543.289872/94‑1 (MQ=60)
               CCTGATTCTGAAAGATGAGAAAGACACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACC                                                                                >  SRR4302543.6265602/1‑94 (MQ=60)
               CCTGATTCTGAAAGATGAGAAAGACACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTAAGCGCAATCCTGGCCTGACC                                                                                <  SRR4302543.1796092/94‑1 (MQ=60)
               CCTGATTCTGAAAGATGAGAAAGACACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGGTTTGGTGAGCGCAATCCTGGCCTGACC                                                                                >  SRR4302543.6265603/1‑94 (MQ=60)
                CTGATTCTGAAAGATGAGAGAGACACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCC                                                                               >  SRR4302543.4398126/1‑94 (MQ=60)
                CTGATTCTGAAAGATGAGAAAGACACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCC                                                                               <  SRR4302543.1320399/94‑1 (MQ=60)
                CTGATTCTGAAAGATGAGAAAGACACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCC                                                                               >  SRR4302543.820641/1‑94 (MQ=60)
                 TGATTCTGAAAGATGAGAAAGACACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCG                                                                              >  SRR4302543.7151386/1‑94 (MQ=60)
                 TGATTCTGAAAGATGAGAAAGACACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCG                                                                              >  SRR4302543.1031274/1‑94 (MQ=60)
                   ATTCTGAAAGATGAGAAAGACACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCA                                                                            >  SRR4302543.2073789/1‑94 (MQ=60)
                   ATTCTGAAAGATGAGAAAGACACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCA                                                                            >  SRR4302543.6900139/1‑94 (MQ=60)
                   ATTCTGAAAGATGAGAAAGACACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCA                                                                            <  SRR4302543.5024087/94‑1 (MQ=60)
                   ATTCTGAAAGATGAGAAAGACACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCA                                                                            >  SRR4302543.2835067/1‑94 (MQ=60)
                   ATTCTGAAAGATGAGAAAGACACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCA                                                                            >  SRR4302543.2835066/1‑94 (MQ=60)
                     TCTGAAAGATGAGAAAGACACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATC                                                                          >  SRR4302543.7660717/1‑94 (MQ=60)
                      CTGAAAGATGAGAAAGACACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCC                                                                         >  SRR4302543.6412488/1‑94 (MQ=60)
                      CTGAAAGATGAGAAAGACACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCC                                                                         <  SRR4302543.312538/94‑1 (MQ=60)
                      CTGAAAGATGAGAAAGACACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCC                                                                         <  SRR4302543.2859352/94‑1 (MQ=60)
                      CTGAAAGATGAGAAAGACACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCC                                                                         >  SRR4302543.1473184/1‑94 (MQ=60)
                      CTGAAAGATGAGAAAGACACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATACTGGCCTGACCCGCATCC                                                                         >  SRR4302543.7250209/1‑94 (MQ=60)
                       TGAAAGATGAGAAAGACACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCT                                                                        >  SRR4302543.469975/1‑94 (MQ=60)
                       TGAAAGATGAGAAAGACACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCT                                                                        <  SRR4302543.2619775/94‑1 (MQ=60)
                       TGAAAGATGAGAAAGACACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCT                                                                        <  SRR4302543.254310/94‑1 (MQ=60)
                        GAAAGATGAGAAAGACACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTC                                                                       >  SRR4302543.5182822/1‑94 (MQ=60)
                        GAAAGATGAGAAAGACACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTC                                                                       >  SRR4302543.7438688/1‑94 (MQ=60)
                         AAAGATGAGAAAGACACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCA                                                                      >  SRR4302543.7856204/1‑94 (MQ=60)
                         AAAGATGAGAAAGACACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCA                                                                      >  SRR4302543.2477814/1‑94 (MQ=60)
                          AAGATGAGAAAGACACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCAC                                                                     <  SRR4302543.995432/94‑1 (MQ=60)
                           AGATGAGAAAGACACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACTCGCATCCTCACT                                                                    >  SRR4302543.2709735/1‑94 (MQ=60)
                           AGATGAGAAAGACACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACT                                                                    >  SRR4302543.4128460/1‑94 (MQ=60)
                           AGATGAGAAAGACACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACT                                                                    >  SRR4302543.5798920/1‑94 (MQ=60)
                           AGATGAGAAAGACACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACT                                                                    <  SRR4302543.541401/94‑1 (MQ=60)
                           AGATGAGAAAGACACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATACTCACT                                                                    >  SRR4302543.3605628/1‑94 (MQ=60)
                            GAGGAGAAAGACACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTG                                                                   <  SRR4302543.2902655/94‑1 (MQ=60)
                             ATGAGAAAGACACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGG                                                                  >  SRR4302543.591530/1‑94 (MQ=60)
                             ATGAGAAAGACACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGG                                                                  <  SRR4302543.1002830/94‑1 (MQ=60)
                              TGAGAAAGACACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGT                                                                 <  SRR4302543.3973468/94‑1 (MQ=60)
                               GAGAAAGACACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTC                                                                <  SRR4302543.4133583/94‑1 (MQ=60)
                                 GAAAGACACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCAT                                                              <  SRR4302543.2114384/94‑1 (MQ=60)
                                 GAAAGACACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCAT                                                              >  SRR4302543.178739/1‑94 (MQ=60)
                                  AAAGACACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATG                                                             >  SRR4302543.4501682/1‑94 (MQ=60)
                                   AAGACACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGC                                                            <  SRR4302543.865698/94‑1 (MQ=60)
                                    AGACACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCG                                                           <  SRR4302543.7739578/94‑1 (MQ=60)
                                    AGACACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCG                                                           >  SRR4302543.175884/1‑94 (MQ=60)
                                    AGACACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCG                                                           <  SRR4302543.5867346/94‑1 (MQ=60)
                                    AGACACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCG                                                           <  SRR4302543.6019/94‑1 (MQ=60)
                                      ACACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCT                                                         <  SRR4302543.1534157/94‑1 (MQ=60)
                                       CACCACAGCGCGCCTGCGTCTGGTTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTA                                                        >  SRR4302543.1412602/1‑94 (MQ=60)
                                       CACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTA                                                        >  SRR4302543.5344662/1‑94 (MQ=60)
                                       CACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTA                                                        >  SRR4302543.4767815/1‑94 (MQ=60)
                                       CACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTA                                                        >  SRR4302543.6872174/1‑94 (MQ=60)
                                        ACCGCAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAA                                                       >  SRR4302543.1051293/1‑94 (MQ=60)
                                        ACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAA                                                       >  SRR4302543.7985133/1‑94 (MQ=60)
                                        ACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAA                                                       >  SRR4302543.363536/1‑94 (MQ=60)
                                        ACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAA                                                       >  SRR4302543.3813079/1‑94 (MQ=60)
                                         CCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAAT                                                      <  SRR4302543.6758137/94‑1 (MQ=60)
                                         CCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAAT                                                      <  SRR4302543.3875328/94‑1 (MQ=60)
                                         CCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAAT                                                      <  SRR4302543.315497/94‑1 (MQ=60)
                                          CACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATT                                                     >  SRR4302543.2665188/1‑94 (MQ=60)
                                          CACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATG                                                     >  SRR4302543.4236524/1‑94 (MQ=60)
                                          CACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATG                                                     <  SRR4302543.5330879/94‑1 (MQ=60)
                                             AGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTT                                                  <  SRR4302543.2231979/94‑1 (MQ=60)
                                             AGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTT                                                  >  SRR4302543.3853234/1‑94 (MQ=60)
                                             AGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTT                                                  <  SRR4302543.6907063/94‑1 (MQ=60)
                                             AGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTT                                                  <  SRR4302543.2231980/94‑1 (MQ=60)
                                                 CGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAAC                                              >  SRR4302543.5152164/1‑94 (MQ=60)
                                                 CGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAAC                                              <  SRR4302543.4391773/94‑1 (MQ=60)
                                                  GCGTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACA                                             <  SRR4302543.7214823/94‑1 (MQ=60)
                                                  GCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATGCTGGCCTGCCCCGCATCCTCATTGGTCGTGCGCTAcgttttgcagg                                             >  SRR4302543.4371547/1‑83 (MQ=60)
                                                  GCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACA                                             >  SRR4302543.2361686/1‑94 (MQ=60)
                                                  GCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACA                                             >  SRR4302543.1523241/1‑94 (MQ=60)
                                                   CCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAG                                            >  SRR4302543.658597/1‑94 (MQ=60)
                                                   CCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAG                                            >  SRR4302543.7490037/1‑94 (MQ=60)
                                                    CTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAGG                                           <  SRR4302543.4700470/94‑1 (MQ=60)
                                                    CTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAGG                                           <  SRR4302543.894497/94‑1 (MQ=60)
                                                    CTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAGG                                           >  SRR4302543.1850505/1‑94 (MQ=60)
                                                    CTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAGG                                           <  SRR4302543.774345/94‑1 (MQ=60)
                                                     TGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAGGA                                          <  SRR4302543.1636651/94‑1 (MQ=60)
                                                      GCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAGGAT                                         <  SRR4302543.7922002/94‑1 (MQ=60)
                                                      GCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAGGAT                                         <  SRR4302543.7733486/94‑1 (MQ=60)
                                                       CGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCCCTGGTCATGCGCTAATGTTTGAACAGGATC                                        <  SRR4302543.6757372/94‑1 (MQ=60)
                                                       CGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAGGATC                                        <  SRR4302543.1593683/94‑1 (MQ=60)
                                                       CGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAGGATC                                        <  SRR4302543.3895183/94‑1 (MQ=60)
                                                       CGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAGGATC                                        <  SRR4302543.4190789/94‑1 (MQ=60)
                                                       CGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAGGATC                                        >  SRR4302543.5529234/1‑94 (MQ=60)
                                                        GTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAGGATCG                                       >  SRR4302543.3010682/1‑94 (MQ=60)
                                                        GTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAGGATCG                                       >  SRR4302543.1602948/1‑94 (MQ=60)
                                                        GTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAGGATCG                                       >  SRR4302543.7879164/1‑94 (MQ=60)
                                                        GTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAGGATCG                                       >  SRR4302543.7466087/1‑94 (MQ=60)
                                                        GTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAGGATCG                                       <  SRR4302543.4393595/94‑1 (MQ=60)
                                                         TCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAGGATCGC                                      >  SRR4302543.6958497/1‑94 (MQ=60)
                                                          CTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAGGATCGCC                                     <  SRR4302543.5656452/94‑1 (MQ=60)
                                                          CTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAGGATCGCC                                     >  SRR4302543.3632440/1‑94 (MQ=60)
                                                          CTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAGGATCGCC                                     <  SRR4302543.4729/94‑1 (MQ=60)
                                                           TGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAGGATCGCCT                                    <  SRR4302543.7373043/94‑1 (MQ=60)
                                                           TGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAGGATCGCCT                                    <  SRR4302543.1181659/94‑1 (MQ=60)
                                                            GATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAGGATCGCCTG                                   <  SRR4302543.5081024/94‑1 (MQ=60)
                                                             ATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAGGATCGCCTGC                                  >  SRR4302543.4100954/1‑94 (MQ=60)
                                                             ATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAGGATCGCCTGC                                  <  SRR4302543.3902325/94‑1 (MQ=60)
                                                             ATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAGGATCGCCTGC                                  <  SRR4302543.5887247/94‑1 (MQ=60)
                                                              TTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAGGATCGCCTGCA                                 <  SRR4302543.1148359/94‑1 (MQ=60)
                                                              TTCTGTTGCTCCGTCTCGGTTTTGCTGAGCGCAATCCTGTCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAGGATCCCCTGCA                                 <  SRR4302543.1148360/94‑1 (MQ=60)
                                                               TGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAGGATCGCCTGCAA                                <  SRR4302543.4358802/94‑1 (MQ=60)
                                                               TGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAGGATCGCCTGCAA                                >  SRR4302543.7894374/1‑94 (MQ=60)
                                                               TGTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAGGATCGCCTGCAA                                >  SRR4302543.1256774/1‑94 (MQ=60)
                                                                GTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAGGATCGCCTGCAAG                               <  SRR4302543.5487893/94‑1 (MQ=60)
                                                                GTGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAGGATCGCCTGCAAG                               >  SRR4302543.6280317/1‑94 (MQ=60)
                                                                 TGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAGGATCGCCTGCAAGG                              >  SRR4302543.5093887/1‑94 (MQ=60)
                                                                 TGTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTCGTCATGCGCTAATGTTTGAACAGGATCGCCTGCAAGG                              >  SRR4302543.2494243/1‑94 (MQ=60)
                                                                  GTTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAGGATCGCCTGCAAGGG                             <  SRR4302543.6213178/94‑1 (MQ=60)
                                                                   TTTCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAGGATCGCCTGCAAGGGC                            <  SRR4302543.797397/94‑1 (MQ=60)
                                                                   TTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAGGATCGCCTGCAAGGGC                            <  SRR4302543.2064024/94‑1 (MQ=60)
                                                                   TTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAGGATCGCCTGCAAGGGC                            <  SRR4302543.1709538/94‑1 (MQ=60)
                                                                   TTGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAGGATCGCCTGCAAGGGC                            <  SRR4302543.678764/94‑1 (MQ=60)
                                                                    TGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAGGATCGCCTGCAAGGGCG                           <  SRR4302543.6200160/94‑1 (MQ=60)
                                                                    TGCTGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAGGATCGCCTGCAAGGGCG                           <  SRR4302543.4275768/94‑1 (MQ=60)
                                                                       TGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAGGATCGCCTGCAAGGGCGCAT                        >  SRR4302543.4518777/1‑94 (MQ=60)
                                                                       TGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAGGATCGCCTGCAAGGGCGCAT                        <  SRR4302543.1563795/94‑1 (MQ=60)
                                                                       TGCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAGGATCGCCTGCAAGGGCGCAT                        <  SRR4302543.2787541/94‑1 (MQ=60)
                                                                        GCTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAGGATCGCCTGCAAGGGCGCATC                       >  SRR4302543.4782685/1‑94 (MQ=60)
                                                                         CTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAGGATCGCCTGCAAGGGCGCATCA                      <  SRR4302543.7377664/94‑1 (MQ=60)
                                                                         CTTCTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAGGATCGCCTGCAAGGGCGCATCA                      >  SRR4302543.4893457/1‑94 (MQ=60)
                                                                            CTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAGGATCGCCTGCAAGGGCGCATCAACC                   >  SRR4302543.6836500/1‑94 (MQ=60)
                                                                            CTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAGGATCGCCTGCAAGGGCGCATCAACC                   >  SRR4302543.4508918/1‑94 (MQ=60)
                                                                            CTCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAGGATAGCCTGCAAGGGCGCATCAACC                   >  SRR4302543.5652411/1‑94 (MQ=60)
                                                                             TCGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAGGATCGCCTGCAAGGGCGCATCAACCA                  <  SRR4302543.2973398/94‑1 (MQ=60)
                                                                              CGGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAGGATCGCCTGCAAGGGCGCATCAACCAG                 <  SRR4302543.2319415/94‑1 (MQ=60)
                                                                               GGTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAGGATCGCCTGCAAGGGCGCATCAACCAGC                >  SRR4302543.1831430/1‑94 (MQ=60)
                                                                                GTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAGGATCGCCTGCAAGGGCGCATCAACCAGCT               >  SRR4302543.7878881/1‑94 (MQ=60)
                                                                                GTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAGGATCGCCTGCAAGGGCGCATCAACCAGCT               <  SRR4302543.2173210/94‑1 (MQ=60)
                                                                                GTTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAGGATCGCCTGCAAGGGCGCATCAACCAGCT               >  SRR4302543.4464337/1‑94 (MQ=60)
                                                                                 TTTTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAGGATCGCCTGCAAGGGCGCATCAACCAGCTG              <  SRR4302543.3189708/94‑1 (MQ=60)
                                                                                   TTGGTGAGCGCAATCCTGGTCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAGGATCGCCTGCAAGGGCGCATCAACCAGCTGTT            <  SRR4302543.4537588/94‑1 (MQ=60)
                                                                                   TTGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAGGATCGCCTGCAAGGGCGCATCAACCAGCTGTT            <  SRR4302543.1766549/94‑1 (MQ=60)
                                                                                    TGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAGGATCGCCTGCAAGGGCGCATCAACCAGCTGTTC           <  SRR4302543.7032805/94‑1 (MQ=60)
                                                                                    TGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAGGATCGCCTGCAAGGGCGCATCAACCAGCTGTTC           <  SRR4302543.2030468/94‑1 (MQ=60)
                                                                                    TGGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAGGATCGCCTGCAAGGGCGCATCAACCAGCTGTTC           <  SRR4302543.5965149/94‑1 (MQ=60)
                                                                                     GGTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAGGATCGCCTGCAAGGGCGCATCAACCAGCTGTTCG          >  SRR4302543.549631/1‑94 (MQ=60)
                                                                                      GTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAGGATCGCCTGCAAGGGCGCATCAACCAGCTGTTCGA         >  SRR4302543.2684492/1‑94 (MQ=60)
                                                                                      GTGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAGGATCGCCTGCAAGGGCGCATCAACCAGCTGTTCGA         >  SRR4302543.96841/1‑94 (MQ=60)
                                                                                       TGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAGGATCGCCTGCAAGGGCGCATCAACCAGCTGTTCGAG        <  SRR4302543.2797488/94‑1 (MQ=60)
                                                                                       TGAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAGGATCGCCTGCAAGGGCGCATCAACCAGCTGTTCGAG        >  SRR4302543.7198960/1‑94 (MQ=60)
                                                                                        GAGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAGGATCGCCTGCAAGGGCGCATCAACCAGCTGTTCGAGC       <  SRR4302543.6034135/94‑1 (MQ=60)
                                                                                         AGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAGGATCGCCTGCAAGGGCGCATCAACCAGCTGTTCGAGCG      >  SRR4302543.7254761/1‑94 (MQ=60)
                                                                                         AGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAGGATCGCCTGCAAGGGCGCATCAACCAGCTGTTCGAGCG      >  SRR4302543.2872071/1‑94 (MQ=60)
                                                                                         AGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAGGATCGCCTGCAAGGGCGCATCAACCAGCTGTTCGAGCG      >  SRR4302543.3105385/1‑94 (MQ=60)
                                                                                         AGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAGGATCGCCTGCAAGGGCGCATCAACCAGCTGTTCGAGCG      >  SRR4302543.4919745/1‑94 (MQ=60)
                                                                                         AGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAGGATCGCCTGCAAGGGCGCATCAACCAGCTGTTCGAGCG      >  SRR4302543.3740026/1‑94 (MQ=60)
                                                                                         AGCGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAGGATCGCCTGCAAGGGCGCATCAACCAGCTGTTCGAGCG      <  SRR4302543.377595/94‑1 (MQ=60)
                                                                                           CGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAGGATCGCCTGCAAGGGCGCATCAACCAGCTGTTCGAGCGTA    <  SRR4302543.7874107/94‑1 (MQ=60)
                                                                                           CGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAGGATCGCCTGCAAGGGCGCATCAACCAGCTGTTCGAGCGTA    >  SRR4302543.6397894/1‑94 (MQ=60)
                                                                                           CGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAGGATCGCCTGCAAGGGCGCATCAACCAGCTGTTCGAGCGTA    <  SRR4302543.1926429/94‑1 (MQ=60)
                                                                                           CGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAGGATCGCCTGCAAGGGCGCATCAACCAGCTGTTCGAGCGTA    >  SRR4302543.1897518/1‑94 (MQ=60)
                                                                                           CGCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAGGATCGCCTGCAAGGGCGCATCAACCAGCTGTTCGAGCGTA    <  SRR4302543.4983099/94‑1 (MQ=60)
                                                                                            GCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAGGATCGCCTGCAAGGGCGCATCAACCAGCTGTTCGAGCGTCT   >  SRR4302543.4545507/1‑94 (MQ=60)
                                                                                            GCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAGGATCGCCTGCAAGGGCGCATCAACCAGCTGTTCGAGCGTAT   >  SRR4302543.1805694/1‑94 (MQ=60)
                                                                                            GCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAGGATCGCCTGCAAGGGCGCATCAACCAGCTGTTCGAGCGTAT   <  SRR4302543.3993997/94‑1 (MQ=60)
                                                                                            GCAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAGGATCGCCTGCAAGGGCGCATCAACCAGCTGTTCGAGCGTAT   <  SRR4302543.242169/94‑1 (MQ=60)
                                                                                             CAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAGGATCGCCTGCAAGGGCGCATCAACCAGCTGTTCGAGCGTATT  >  SRR4302543.3233568/1‑94 (MQ=60)
                                                                                             CAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAGGATCGCCTGCAAGGGCGCATCAACCAGCTGTTCGAGCGTATT  <  SRR4302543.111586/94‑1 (MQ=60)
                                                                                             CAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAGGATCGCCTGCAAGGGCGCATCAACCAGCTGTTCGAGCGTATT  >  SRR4302543.1092129/1‑94 (MQ=60)
                                                                                             CAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAGGATCGCCTGCAAGGGCGCATCAACCAGCTGTTCGAGCGTATT  >  SRR4302543.7095585/1‑94 (MQ=60)
                                                                                             CAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAGGATCGCCTGCAAGGGCGCATCAACCAGCTGTTCGAGCGTATT  <  SRR4302543.6056761/94‑1 (MQ=60)
                                                                                             CAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAGGATCGCCTGCAAGGGCGCATCAACCAGCTGTTCGAGCGTATT  <  SRR4302543.1404867/94‑1 (MQ=60)
                                                                                             |                                                                                             
GATTACTCGCATCAACCTGATTCTGAAAGATGAGAAAGACACCACAGCGCGCCTGCGTCTGATTGTGTTGCTGCTTCTCGGTTTTGGTGAGCGTAATCCTGGCCTGACCCGCATCCTCACTGGTCATGCGCTAATGTTTGAACAGGATCGCCTGCAAGGGCGCATCAACCAGCTGTTCGAGCGTATT  >  NC_000913/3812330‑3812516

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑