Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I1 R1 1696 279.3 15874187 97.8% 15524954 93.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,860,862 T→C A123A (GCA→GCG b4553 ← hypothetical protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,860,8620TC99.7% 1220.6 / ‑5.5 387A123A (GCA→GCGb4553hypothetical protein
Reads supporting (aligned to +/- strand):  ref base T (0/1);  new base C (220/166);  total (220/167)
Fisher's exact test for biased strand distribution p-value = 4.32e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.57e-01

Only 100 of 399 total aligned reads displayed.

CAGCGCCGTCACAATGCCGGAAATGATAATTGCGCCGATAATGCTGGTATCGAGGGTTTTAATCCCGGCCATCATTGTCAGACCGCTACCTGCCACCGCGTCCTGAGTGAAATCGACGCCGAAGTAGCTTCCCCAGGTCATTCCCATCGCGTTGATGAAATAGTTCCAGGTCAGGAAACT  >  NC_000913/3860772‑3860951
                                                                                          |                                                                                         
cAGCGCCGTCACAATGCCGGAAATGATAATTGCGCCGATAATGCTGGTATCGAGGGTTTTAATCCCGGCCATCATTGTCAGACCGCTACCCGc                                                                                         >  1:6168828/1‑93 (MQ=255)
     ccGTCACAATGCCGGAAATGATAATTGCGCCGATAATGCTGGTATCGAGGGTTTTAATCCCGGCCATCATTGTCAGACCGCTACCCGCCAccc                                                                                    >  2:197362/1‑92 (MQ=255)
     ccGTCACAATGCCGGAAATGATAATTGCGCCGATAATGCTGGTATCGAGGGTTTTAATCCCGGCCATCATTGTCAGACCGCTACCCGCCACcg                                                                                    <  1:2821920/93‑1 (MQ=255)
     ccGTCACAATGCCGGAAATGATAATTGCGCCGATAATGCTGGTATCGAGGGTTTTAACCCCGGCCATCATTGTCAGACCGCTACCCGCCACcg                                                                                    >  1:1706072/1‑93 (MQ=255)
       gTCACAATGCCGGAAATGATAATTGCGCCGATAATGCTGGTATCGAGGGTTTTAATCCCGGCCATCATTGTCAGACCGCTACCCGCCACcgcg                                                                                  >  2:7924880/1‑93 (MQ=255)
        tCACAATGCCGGAAATGATAATTGCGCCGATAATGCTGGTATCGAGGGTTTTAATCCCGGCCATCATTGTCAGACCGCTACCCGCCACCGCGt                                                                                 >  2:5986224/1‑93 (MQ=255)
        tCACAATGCCGGAAATGATAATTGCGCCGATAATGCTGGTATCGAGGGTTTTAATCCCGGCCATCATTGTCAGACCGCTACCCGCCACCGCGt                                                                                 >  1:23212/1‑93 (MQ=255)
          acaATGCCGGAAATGATAATTGCGCCGATAATGCTGGTATCGAGGGTTTTAATCCCGGCCATCATTGTCAGACCGCTACCCGCCACCGCGTcc                                                                               >  2:6336387/1‑93 (MQ=255)
           caATGCCGGAAATGATAATTGCGCCGATAATGCTGGTATCGAGGGTTTTAATCCCGGCCATCATTGTCAGACCGCTACCCGCCACCGCGTCCt                                                                              <  2:2935460/93‑1 (MQ=255)
            aaTGCCGGAAATGATAATTGCGCCGATAATGCTGGTATCGAGGGTTTTAATCCCGGCCATCATTGTCAGACCGCTACCCGCCACCGCGTCCTg                                                                             >  1:1909027/1‑93 (MQ=255)
            aaTGCCGGAAATGATAATTGCGCCGATAATGCTGGTATCGAGGGTTTTAATCCCGGCCATCATTGTCAGACCGCTACCCGCCACCGCGTCCTg                                                                             >  1:5580471/1‑93 (MQ=255)
             aTGCCGGAAATGATAATTGCGCCGATAATGCTGGTATCGAGGGTTTTAATCCCGGCCATCATTGTCAGACCGCTACCCGCCACCGCGTCCTGa                                                                            >  2:4169758/1‑93 (MQ=255)
             aTGCCGGAAATGATAATTGCGCCGATAATGCTGGTATCGAGGGTTTTAATCCCGGCCATCATTGTCAGACCGCTACCCGCCACCGCGTCCTGa                                                                            <  1:7136954/93‑1 (MQ=255)
              tGCCGGAAATGATAATTGCGCCGATAATGCTGGTATCGAGGGTTTTAATCCCGGCCATCATTGTCAGACCGCTACCCGCCACCGCGTCCTGAg                                                                           <  2:4561076/93‑1 (MQ=255)
              agCCGGAAATGATAATTGCGCCGATAATGCTGGTATCGAGGGTTTTAATCCCGGCAATCATTGTCAGACCGCTACCCGCCACCGCGTCCTGAg                                                                           <  2:1620928/92‑1 (MQ=255)
                 cGGAAATGATAATTGCGCCGATAATGCTGGTATCGAGGGTTTTAATCCCGGCCATCATTGTCAGACCGCTACCCGCCACCGCGTCCTGAGTGa                                                                        >  1:4149303/1‑93 (MQ=255)
                  ggAAATGATAATTGCGCCGATAATGCTGGTATCGAGGGTTTTAATCCCGGCCATCATTGTCAGACCGCTACCCGCCACCGCGTCCTGAGTGaa                                                                       >  1:5919100/1‑93 (MQ=255)
                  ggAAATGATAATTGCGCCGATAATGCTGGTATCGAGGGGTTTAATCCCGGCCATCATTGTCAGACCGCTACCCGCCACCGCGTCCTGAGTGaa                                                                       >  1:759340/1‑93 (MQ=255)
                   gAAATGATAATTGCGCCGATAATGCTGGTATCGAGGGTTTTAATCCCGGCCATCATTGTCAGACCGCTACCCGCCACCGCGTCCTGAGTGaaa                                                                      >  2:432560/1‑93 (MQ=255)
                    aaaGGATAATTGCGCCGATAATGCTGGTATCGAGGGTTTTAATCCCGGCCATCATTGTCAGACCGCTACCCGCCACCGCGTCCTGAGTGAAAt                                                                     <  2:5842746/93‑1 (MQ=255)
                     aaTGATAATTGCGCCGATAATGCTGGTATCGAGGGTTTTAATCCCGGCCATCATTGTCAGACCGCTACCCGCCACCGCGTCCTGAGTGAAATc                                                                    >  1:4774555/1‑93 (MQ=255)
                     aaTGATAATTGCGCCGATAATGCTGGTATCGAGGGTTTTAATCCCGGCCATCATTGTCAGACCGCTACCCGCCACCGCGTCCTGAGTGAAATc                                                                    <  1:3228753/93‑1 (MQ=255)
                      aTGATAATTGCGCCGATAATGCTGGTATCGAGGGTTTTAATCCCGGCCATCATTGTCAGACCGCTACCCGCCACCGCGTCCTGAGTGAAAtag                                                                   >  1:2140398/1‑91 (MQ=255)
                      aTGATAATTGCGCCGATAATGCTGGTATCGAGGGTTTTAATCCCGGCCATCATTGTCAGACCGCTACCCGCCACCGCGTCCTGAGTGAAATCg                                                                   <  1:680323/93‑1 (MQ=255)
                       tGATAATTGCGCCGATAATGCTGGTATCGAGGGTTTTAATCCCGGCCATCATTGTCAGACCGCTACCCGCCACCGCGTCCTGAGTGAAATCGa                                                                  <  2:7297264/93‑1 (MQ=255)
                        gATAATTGCGCCGATAATGCTGGTATCGAGGGTTTTAATCCCGGCCATCATTGTCAGACCGCTACCCGCCACCGCGTCCTGAGTGAAATCGAc                                                                 <  1:4330047/93‑1 (MQ=255)
                        gATAATTGCGCCGATAATGCTGGTATCGAGGGTTTTAATCCCGGCCATCATTGTCAGACCGCTACCCGCCACCGCGTCCTGAGTGAAATCGAc                                                                 >  1:4993171/1‑93 (MQ=255)
                           aaTTGCGCCGATAATGCTGGTATCGAGGGTTTTAATCCCGGCCATCATTGTCAGACCGCTACCCGCCACCGCGTCCTGAGTGAAATCGACGcc                                                              <  2:3132227/93‑1 (MQ=255)
                           aaTTGCGCCGATAATGCTGGTATCGAGGGTTTTAATCCCGGCCATCATTGTCAGACCGCTACCCGCCACCGCGTCCTGAGTGAAATCGACGcc                                                              >  1:2407353/1‑93 (MQ=255)
                            aTTGCGCCGATAATGCTGGTATCGAGGGTTTTAATCCCGGCCATCATTGTCAGACCGCTACCCGCCACCGCGTCCTGAGTGAAATCGACGCCg                                                             >  1:7832017/1‑93 (MQ=255)
                              tGCGCCGATAATGCTGGTATCGAGGGTTTTAATCCCGGCCATCATTGTCAGACCGCTCCCCGCCACCGCGTCCTGAGTGAAATCGACGCCGaa                                                           <  2:6445668/93‑1 (MQ=255)
                              tGCGCCGATAATGCTGGTATCGAGGGTTTTAATCCCGGCCATCATTGTCAGACCGCTACCCGCCACCGCGTCCTGAGTGAAATCGACGCCGaa                                                           <  1:7726963/93‑1 (MQ=255)
                              tGCGCCGATAATGCTGGTATCGAGGGTTTTAATCCCGGCCATCATTGTCAGACCGCTACCCGCCACCGCGTCCTGAGTGAAATCGACGCCGaa                                                           <  2:224602/93‑1 (MQ=255)
                               gcgcCGATAATGCTGGTATCGAGGGTTTTAATCCCGGCCATCATTGTCAGACCGCTACCCGCCACCGCGTCCTGAGTGAAATCGACGCCGAAg                                                          >  2:4710646/1‑93 (MQ=255)
                                  ccGATAATGCTGGTATCGAGGGTTTTAATCCCGGCCATCATTGTCAGACCGCTACCCGCCACCGCGTCCTGAGTGAAATCGACGCCGAAGTAg                                                       <  1:249388/93‑1 (MQ=255)
                                  ccGATAATGCTGGTATCGAGGGTTTTAATCCCGGCCATCATTGTCAGACCGCTACCCGCCACCGCGTCCTGAGTGAAATCGACGCCGAAGTAg                                                       >  2:762695/1‑93 (MQ=255)
                                   cGATAATGCTGGTATCGAGGGGTTTAATCCCGGCCATCATTGTCAGACCGCTACCCGCCACCGCGTCCTGAGTGAAATCGACGCCGAAGTAGc                                                      >  2:1141411/1‑93 (MQ=255)
                                    gATAATGCTGGTATCGAGGGTTTTAATCCCGGCCATCATTGTCAGACCGCTACCCGCCACCGCGTCCTGAGTGAAATCGACGCCGAAGTAGCt                                                     <  2:6502182/93‑1 (MQ=255)
                                    gATAATGCTGGTATCGAGGGTTTTAATCCCGGCCATCATTGTCAGACCGCTACCCGCCACCGCGTCCTGAGTGAAATCGACGCCGAAGTAGCt                                                     >  1:1786423/1‑93 (MQ=255)
                                    gATAATGCTGGTATCGAGGGTTTTAATCCCGGCCATCATTGTCAGACCGCTACCCGCCACCGCGTCCTGAGTGAAATCGACGCCGAAGGAGCt                                                     >  2:6175246/1‑93 (MQ=255)
                                     aTAATGCTGGTATCGAGGGTTTTAATCCCGGCCATCATTGTCAGACCGCTACCCGCCACCGCGTCCTGAGTGAAATCGACGCCGAAGTAGCtt                                                    <  2:5319086/93‑1 (MQ=255)
                                     aTAATGCTGGTATCGAGGGTTTTAATCCCGGCCATCATTGTCAGACCGCTACCCGCCACCGCGTCCTGAGTGAAATCGACGCCGAAGTAGCtt                                                    >  2:7428975/1‑93 (MQ=255)
                                        aggCTCGTATCGAGGGTTATAATCCCGGCCATCATTGTCAGACCGCTACCCGCGCCCGCGTCGTGAGTGAAACCGACGCCGAAGTAGCTTccc                                                 <  2:5076804/91‑1 (MQ=255)
                                         tGCTGGTATCGAGGGTTTTAATCCCGGCCATCATTGTCAGACCGCTACCCGCCACCGCGTCCTGAGTGAAATCGACGCCGAAGTAGCTTcccc                                                <  1:1069002/93‑1 (MQ=255)
                                         tGCTGGTATCGAGGGTTTTAATCCCGGCCATCATTGTCAGACCGCTACCCGCCACCGCGTCCTGAGTGAAATCGACGCCGAAGTAGCTTcccc                                                >  1:1493482/1‑93 (MQ=255)
                                            tGGTATCGAGGGTTTTAATCCCGGCCATCATTGTCAGACCGCTACCCGCCACCGCGTCCTGAGTGAAATCGACGCCGAAGTAGCTTCCCCAgg                                             <  2:855046/93‑1 (MQ=255)
                                            tGGTATCGAGGGTTTTAATCCCGGCCATCATTGTCAGACCGCTACCCGCCACCGCGTCCTGAGTGAAATCGACGCCGAAGTAGCTTCCCCAgg                                             >  1:5738033/1‑93 (MQ=255)
                                                aTCGAGGGTTTTAATCCCGGCCATCATTGTCAGACCGCTACCCGCCACCGCGTCCTGAGTGAAATCGACGCCGAAGTAGCTTCCCCAGGTCAt                                         <  1:7393395/93‑1 (MQ=255)
                                                 tCGAGGGTTTTAATCCCGGCCATCATTGTCAGACCGCTACCCGCCACCGCGTCCTGAGTGAAATCGACGCCGAAGTAGCTTCCCCAGGTCAtt                                        >  1:4715483/1‑93 (MQ=255)
                                                  cGAGGGTTTTAATCCCGGCCATCATTGTCAGACCGCTACCCGCCACCGCGTCCTGAGTGAAATCGACGCCGAAGTAGCTTCCCCAGGTCATTc                                       <  1:5094005/93‑1 (MQ=255)
                                                   gAGGGTTTTAATCCCGGCCATCATTGTCAGACCGCTACCCGCCACCGCGTCCTGAGTGAAATCGACGCCGAAGTAGCTTCCCCAGGTCATTcc                                      >  2:3335242/1‑93 (MQ=255)
                                                    aGGGTTTTAATCCCGGCCATCATTGTCAGACCGCTACCCGCCACCGCGTCCTGAGTGAAATCGACGCCGAAGTAGCTTCCCCAGGTCATTccc                                     >  2:3762214/1‑93 (MQ=255)
                                                    aGGGTTTTAATCCCGGCCATCATTGTCAGACCGCTACCCGCCACCGCGTCCTGAGTGAAATCGACGCCGAAGTAGCTTCCCCAGGTCATTccc                                     >  2:6937942/1‑93 (MQ=255)
                                                    aGGGTTTTAATCCCGGCCATCATTGTCAGACCGCTACCCGCCACCGCGTCCTGAGTGAAATCGACGCCGAAGTAGCTTCCCCAGGTCATTccc                                     >  1:3740894/1‑93 (MQ=255)
                                                        ttttAATCCCGGCCATCATTGTCAGACCGCTACCCGCCACCGCGTCCTGAGTGAAATCGACGCCGAAGTAGCTTCCCCAGGTCATTCCCATcg                                 >  1:7272381/1‑93 (MQ=255)
                                                         tttAATCCCGGCCATCATTGTCAGACCGCTACCCGCCACCGCGTCCTGAGTGAAATCGACGCCGAAGTAGCTTCCCCAGGTCATTCCCATcgc                                >  2:3004431/1‑93 (MQ=255)
                                                           tAATCCCGGCCATCATTGTCAGACCGCTACCCGCCACCGCGTCCTGAGTGAAATCGACGCCGAAGTAGCTTCCCCAGGTCATTCCCATCGCGt                              <  1:3296667/93‑1 (MQ=255)
                                                           tAATCCCGGCCATCATTGTCAGACCGCTACCCGCCACCGCGTCCTGAGTGAAATCGACGCCGAAGTAGCTTCCCCAGGTCATTCCCATCGCGt                              >  2:2431800/1‑93 (MQ=255)
                                                           tAATCCCCGCCATCATTGTCAGACCGCTACCCGCCACCGCGTCCTGAGTGAAATCGACGCCGAAGTAGCTTCCCCAGGTCATTCCCATCGCGt                              <  1:808059/93‑1 (MQ=255)
                                                            aaTCCCGGCCATCATTGTCAGACCGCTACCCGCCACCGCGTCCTGAGTGAAATCGACGCCGAAGTAGCTTCCCCAGGTCATTCCCATCGCGtt                             <  1:5212250/93‑1 (MQ=255)
                                                             aTCCCGGCCATCATTGTCAGACCGCTACCCGCCACCGCGTCCTGAGTGAAATCGACGCCGAAGTAGCTTCCCCAGGTCATTCCCATCGCGTtg                            >  1:6704576/1‑93 (MQ=255)
                                                             aTCCCGGCCATCATTGTCAGACCGCTACCCGCCACCGCGTCCTGAGTGAAATCGACGCCGAAGTAGCTTCCCCAGGTCATTCCCATCGCGTtg                            >  1:1988278/1‑93 (MQ=255)
                                                             aTCCCGGCCATCATTGTCAGACCGCTACCCGCCACCGCGTCCTGAGTGAAATCGACGCCGAAGTAGCTTCCCCAGGTCATTCCCATCGCGTtg                            <  1:3621119/93‑1 (MQ=255)
                                                             aTCCCGGCCATCATTGTCAGACCGCTACCCGCCACCGCGTCCTGAGTGAAATCGACGCCGAAGTAGCTTCCCCAGGTCATTCCCATCGCGTtg                            >  1:7888887/1‑93 (MQ=255)
                                                               cccGGCCATCATTGTCAGACCGCTACCCGCCACCGCGTCCTGAGTGAAATCGACGCCGAAGTAGCTTCCCCAGGTCATTCCCATCGCGTtgat                          >  1:42393/1‑93 (MQ=255)
                                                                ccGGCCATCATTGTCAGACCGCTACCCGCCACCGCGTCCTGAGTGAAATCGACGCCGAAGTAGCTTCCCCAGGTCATTCCCATCGCGTtgatg                         >  2:5423045/1‑93 (MQ=255)
                                                                 cGGCCATCATTGTCAGACCGCTACCCGCCACCGCGTCCTGAGTGAAATCGACGCCGAAGTAGCTTCCCCAGGTCATTCCCATCGCGTtgatga                        <  1:2222663/93‑1 (MQ=255)
                                                                 cGGCCATCATTGTCAGACCGCTACCCGCCACCGCGTCCTGAGTGAAATCGACGCCGAAGTAGCTTCCCCAGGTCATTCCCATCGCGTtgatga                        >  2:1266681/1‑93 (MQ=255)
                                                                 cGGCCATCATTGTCAGACCGCTACCCGCCACCGCGTCCTGAGTGAAATCGACGCCGAAGTAGCTTCCCCAGGTCATTCCCATCGCGTtgatga                        <  1:4479451/93‑1 (MQ=255)
                                                                  ggCCATCATTGTCAGACCGCTACCCGCCACCGCGTCCTGAGTGACATCGACGCCGAAGTAACTTCCCCACGTCATTCCCATCCCGTTGATGaa                       >  1:2649356/1‑93 (MQ=255)
                                                                   gCCATCATTGTCAGACCGCTACCCGCCACCGCGTCCTGAGTGAAATCGACGCCGAAGTAGCTTCCCCAGGTCATTCCCATCGCGTTGATGaaa                      >  2:438769/1‑93 (MQ=255)
                                                                   gCCATCATTGTCAGACCGCTACCCGCCACCGCGTCCTGAGTGAAATCGACGCCGAAGTAGCTTCCCCAGGTCATTCCCATCGCGTTGATGaaa                      <  1:6312902/93‑1 (MQ=255)
                                                                    ccATCATTGTCAGACCGCTACCCGCCACCGCGTCCTGAGTGAAATCGACGCCGAAGTAGCTTCCCCAGGTCATTCCCATCGCGTTGATGAAAt                     <  2:308676/93‑1 (MQ=255)
                                                                     catcatTGTCAGACCGCTACCCGCCACCGCGTCCTGAGTGAAATCGACGCCGAAGTAGCTTCCCCAGGTCATTCCCATCGCGTTGATGAAATa                    <  2:2657652/93‑1 (MQ=255)
                                                                     catcatTGTCAGACCGCTACCCGCCACCGCGTCCTGAGTGAAATCGACGCCGAAGTAGCTTCCCCAGGTCATTCCCATCGCGTTGATGAAATa                    <  1:2774537/93‑1 (MQ=255)
                                                                     catcatTGTCAGACCGCTACCCGCCACCGCGTCCTGAGTGAAATCGACGCCGAAGTAGCTTCCCCAGGTCATTCCCATCGCGTTGATGAAATa                    <  2:1780567/93‑1 (MQ=255)
                                                                      atcatTGTCAGACCGCTACCCGCCACCGCGTCCTGAGTGAAATCGACGCCGAAGTAGCTTCCCCAGGTCATTCCCATCGCGTTGATGAAATAg                   >  2:3573569/1‑93 (MQ=255)
                                                                      atcatTGTCAGACCGCTACCCGCCACCGCGTCCTGAGTGAAATCGACGCCGAAGTAGCTTCCCCAGGTCATTCCCATCGCGTTGATGAAATAg                   >  2:5690039/1‑93 (MQ=255)
                                                                       tcatTGTCAGACCGCTACCCGCCACCGCGTCCTGAGTGAAATCGACGCCGAAGTAGCTTCCCCAGGTCATTCCCATCGCGTTGATGAAATAGt                  >  2:2832128/1‑93 (MQ=255)
                                                                       tcatTGTCAGACCGCTACCCGCCACCGCGTCCTGAGTGAAATCGACGCCGAAGTAGCTTCCCCAGGTCATTCCCATCGCGTTGATGAAATAGt                  >  2:4627727/1‑93 (MQ=255)
                                                                       tcatTGTCAGACCGCTACCCGCCACCGCGTCCTGAGTGAAATCGACGCCGAAGTAGCTTCCCCAGGTCATTCCCATCGCGTTGATGAAATAGt                  >  1:5371395/1‑93 (MQ=255)
                                                                        catTGTCAGACCGCTACCCGCCACCGCGTCCTGAGTGAAATCGACGCCGAAGTAGCTTCCCCAGGTCATTCCCATCGCGTTGATGAAATAGtt                 <  2:3988871/93‑1 (MQ=255)
                                                                         atTGTCAGACCGCTACCCGCCACCGCGTCCTGAGTGAAATCGACGCCGAAGTAGCTTCCCCAGGTCATTCCCATCGCGTTGATGAAATAGTTc                >  1:6906267/1‑93 (MQ=255)
                                                                         atTGTCAGACCGCTACCCGCCACCGCGTCCTGAGTGAAATCGACGCCGAAGTAGCTTCCCCAGGTCATTCCCATCGCGTTGATGAAATAGTTc                <  1:2988225/93‑1 (MQ=255)
                                                                         atTGTCAGACCGCTACCCGCCACCGCGTCCTGAGTGAAATCGACGCCGAAGTAGCTTCCCCAGGTCATTCCCATCGCGTTGATGAAATAGTTc                <  1:461295/93‑1 (MQ=255)
                                                                          ttGTCAGACCGCTACCCGCCACCGCGTCCTGAGTGAAATCGACGCCGAAGTAGCTTCCCCAGGTCATTCCCATCGCGTTGATGAAATAGTTcc               >  1:1160742/1‑93 (MQ=255)
                                                                          ttGTCAGACCGCTACCCGCCACCGCGTCCTGAGTGAAATCGACGCCGAAGTAGCTTCCCCAGGTCATTCCCATCGCGTTGATGAAATAGTTcc               >  2:7789126/1‑93 (MQ=255)
                                                                           tGTCAGACCGCTACCCGCCACCGCGTCCTGAGTGAAATCGACGCCGAAGTAGCTTCCCCAGGTCATTCCCATCGCGTTGATGAAATAGTTCCa              <  1:6464927/93‑1 (MQ=255)
                                                                             tCAGACCGCTACCCGCCACCGCGTCCTGAGTGAAATCGACGCCGAAGTAGCTTCCCCAGGTCATTCCCATCGCGTTGATGAAATAGTTCCAgg            <  1:4040782/93‑1 (MQ=255)
                                                                                gACCGCTACCCGCCACCGCGTCCTGAGTGAAATCGACGCCGAAGTAGCTTCCCCAGGTCATTCCCATCGCGTTGATGAAATAGTTCCAGGTCa         >  1:965651/1‑93 (MQ=255)
                                                                                gACCGCTACCCGCCACCGCGTCCTGAGTGAAATCGACGCCGAAGTAGCTTCCCCAGGTCATTCCCATCGCGTTGATGAAATAGTTCCAGGTCa         <  1:6572070/93‑1 (MQ=255)
                                                                                  ccGCTACCCGCCACCGCGTCCTGAGTGAAATCGACGCCGAAGTAGCTTCCCCAGGTCATTCCCATCGCGTTGATGAAATAGTTCCAGGTCAgg       <  2:1440411/93‑1 (MQ=255)
                                                                                    gCTACCCGCCACCGCGTCCTGAGTGAAATCGACGCCGAAGTAGCTTCCCCAGGTCATTCCCATCGCGTTGATGAAATAGTTCCAGGTCAGGaa     >  1:1005353/1‑93 (MQ=255)
                                                                                     cTACCCGCCACCGCGTCCTGAGTGAAATCGACGCCGAAGTAGCTTCCCCAGGTCATTCCCATCGCGTTGATGAAATAGTTCCAGGTCAGGaaa    <  1:129113/93‑1 (MQ=255)
                                                                                      tACCCGCCACCGCGTCCTGAGTGAAATCGACGCCGAAGTAGCTTCCCCAGGTCATTCCCATCGCGTTGATGAAATAGTTCCAGGTCAGGAAAc   >  1:7507775/1‑93 (MQ=255)
                                                                                      tACCCGCCACCGCGTCCTGAGTGAAATCGACGCCGAAGTAGCTTCCCCAGGTCATTCCCATCGCGTTGATGAAATAGTTCCAGGTCAGGAAAc   <  2:70417/93‑1 (MQ=255)
                                                                                      tACCCGCCACCGCGTCCTGAGTGAAATCGACGCCGAAGTAGCTTCCCCAGGTCATTCCCATCGCGTTGATGAAATAGTTCCAGGTCAGGAAAc   <  1:39181/93‑1 (MQ=255)
                                                                                      tACCCGCCACCGCGTCCTGAGTGAAATCGACGCCGAAGTAGCTTCCCCAGGTCATTCCCATCGCGTTGATGAAATAGTTCCAGGTCAGGAAAc   <  2:3172678/93‑1 (MQ=255)
                                                                                       aCCCGCCACCGCGTCCTGAGTGAAATCGACGCCGAAGTAGCTTCCCCAGGTCATTCCCATCGCGTTGATGAAATAGTTCCAGGTCCGGAAAcc  <  2:4798773/93‑2 (MQ=255)
                                                                                       aCCCGCCACCGCGTCCTGAGTGAAATCGACGCCGAAGTAGCTTCCCCAGGTCATTCCCATCGCGTTGATGAAATAGTTCCAGGTCAGGAAACt  <  2:6663034/93‑1 (MQ=255)
                                                                                          |                                                                                         
CAGCGCCGTCACAATGCCGGAAATGATAATTGCGCCGATAATGCTGGTATCGAGGGTTTTAATCCCGGCCATCATTGTCAGACCGCTACCTGCCACCGCGTCCTGAGTGAAATCGACGCCGAAGTAGCTTCCCCAGGTCATTCCCATCGCGTTGATGAAATAGTTCCAGGTCAGGAAACT  >  NC_000913/3860772‑3860951

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 

GATK/CNVnator alignment

BRESEQ :: bam2aln output Only 200 of 234 total aligned reads displayed.
ATGCAGCGCCGTCACAATGCCGGAAATGATAATTGCGCCGATAATGCTGGTATCGAGGGTTTTAATCCCGGCCATCATTGTCAGACCGCTACCTGCCACCGCGTCCTGAGTGAAATCGACGCCGAAGTAGCTTCCCCAGGTCATTCCCATCGCGTTGATGAAATAGTTCCAGGTCAGGAAACTCACC  >  NC_000913/3860769‑3860955
                                                                                             |                                                                                             
ATGCAGCGCCGTCACAATGCCGGAAATGATAATTGCGCCGATAATGCTGGTATCGAGGGTTTTAATCCCGGCCATCATTGTCAGACCGCTACCC                                                                                               <  SRR4302543.696897/94‑1 (MQ=60)
ATGCAGCGCCGTCACAATGCCGGAAATGATAATTGCGCCGATAATGCTGGTATCGAGGGTTTTAATCCCGGCCATCATTGTCAGACCGCTACCC                                                                                               >  SRR4302543.2655417/1‑94 (MQ=60)
ATGCAGCGCCGTCACAATGCCGGAAATGATAATTGCGCCGATAATGCTGGTATCGAGGGTTTTAATCCCGGCCATCATTGTCAGACCGCTACCC                                                                                               >  SRR4302543.5288008/1‑94 (MQ=60)
ATGCAGCGCCGTCACAATGCCGGAAATGATAATTGCGCCGATAATGCTGGTATCGAGGGTTTTAATCCCGGCCATCATTGTCAGACCGCTACCC                                                                                               >  SRR4302543.4312088/1‑94 (MQ=60)
ATGCAGCGCCGTCACAATGCCGGAAATGATAATTGCGCCGATAATGCTGGTATCGAGGGTTTTAATCCCGGCCATCATTGTCAGACCGCTACCC                                                                                               >  SRR4302543.1568699/1‑94 (MQ=60)
 TGCAGCGCCGTCACAATGCCGGAAATGATAATTGCGCCGATAATGCTGGTATCGAGGGTTTTAATCCCGGCCATCATTGTCAGACCGCTACCCG                                                                                              <  SRR4302543.1899410/94‑1 (MQ=60)
     GCGCCGTCACAATGCCGGAAATGATAATTGCGCCGATAATGCTGGTATCGAGGGTTTTAATCCCGGCCATCATTGTCAGACCGCTACCCGCCAC                                                                                          >  SRR4302543.536112/1‑94 (MQ=60)
      CGCCGTCACAATGCCGGAAATGATAATTGCGCCGATAATGCTGGTATCGAGGGTTTTAATCCCGGCCATCATTGTCAGACCGCTACCCGCCACC                                                                                         >  SRR4302543.1022801/1‑94 (MQ=60)
      CGCCGTCACAATGCCGGAAATGATAATTGCGCCGATAATGCTGGTATCGAGGGTTTTAATCCCGGCCATCATTGTCAGACCGCTACCCGCCACC                                                                                         >  SRR4302543.6351042/1‑94 (MQ=60)
       GCCGTCACAATGCCGGAAATGATAATTGCGCCGATAATGCTGGTATCGAGGGTTTTAATCCCGGCCATCATTGTTAGACCGCTACCCGCCACCG                                                                                        >  SRR4302543.214845/1‑94 (MQ=60)
       GCCGTCACAATGCCGGAAATGATAATTGCGCCGATAATGCTGGTATCGAGGGTTTTAATCCCGGCCATCATTGTCAGACCGCTACCCGCCACCG                                                                                        >  SRR4302543.2509359/1‑94 (MQ=60)
       GCCGTCACAATGCCGGAAATGATAATTGCGCCGATAATGCTGGTATCGAGGGTTTTAATCCCGGCCATCATTGTCAGACCGCTACCCGCCACCG                                                                                        >  SRR4302543.1721346/1‑94 (MQ=60)
       GCCGTCACAATGCCGGAAATGATAATTGCGCCGATAATGCTGGTATCGAGGGTTTTAACCCCGGCCATCATTGTCAGACCGCTACCCGCCACCG                                                                                        >  SRR4302543.1721344/1‑94 (MQ=60)
        CCGTCACAATGCCGGAAATGATAATTGCGCCGATAATGCTGGTATCGAGGGTTTTAATCCCGGCCATCATTGTCAGACCGCTACCCGCCACCGC                                                                                       >  SRR4302543.5054041/1‑94 (MQ=60)
        CCGTCACAATGCCGGAAATGATAATTGCGCCGATAATGCTGGTATCGAGGGTTTTAATCCCGGCCATCATTGTCAGACCGCTACCCGCCACCGC                                                                                       <  SRR4302543.2847739/94‑1 (MQ=60)
         CGTCACAATGCCGGAAATGATAATTGCGCCGATAATGCTGGTATCGAGGGTTTTAATCCCGGCCATCATTGTCAGACCGCTACCCGCCACCGCG                                                                                      >  SRR4302543.886213/1‑94 (MQ=60)
         CGTCACAATGCCGGAAATGATAATTGCGCCGATAATGCTGGTATCGAGGGTTTTAATCCCGGCCATCATTGTCAGACCGCTACCCGCCACCGCG                                                                                      >  SRR4302543.5420568/1‑94 (MQ=60)
          GTCACAATGCCGGAAATGATAATTGCGCCGATAATGCTGGTATCGAGGGTTTTAATCCCGGCCATCATTGTCAGACCGCTACCCGCCACCGCGT                                                                                     >  SRR4302543.6795359/1‑94 (MQ=60)
          GTCACAATGCCGGAAATGATAATTGCGCCGATAATGCTGGTATCGAGGGTTTTAATCCCGGCCATCATTGTCAGACCGCTACCCGCCACCGCGT                                                                                     >  SRR4302543.23427/1‑94 (MQ=60)
          GTCACAATGCCGGAAATGATAATTGCGCCGATAATGCTGGTATCGAGGGTTTTAATCCCGGCCATCATTGTCAGACCGCTACCCGCCACCGCGC                                                                                     >  SRR4302543.5634235/1‑94 (MQ=60)
              CAATGCCGGAAATGATAATTGCGCCGATAATGCTGGTATCGAGGGTTTTAATCCCGGCCATCATTGTCAGACCGCTACCCGCCACCGCGTCCTG                                                                                 >  SRR4302543.5631274/1‑94 (MQ=60)
              CAATGCCGGAAATGATAATTGCGCCGATAATGCTGGTATCGAGGGTTTTAATCCCGGCCATCATTGTCAGACCGCTACCCGCCACCGCGTCCTG                                                                                 >  SRR4302543.1926228/1‑94 (MQ=60)
               AATGCCGGAAATGATAATTGCGCCGATAATGCTGGTATCGAGGGTTTTAATCCCGGCCATCATTGTCAGACCGCTACCCGCCACCGCGTCCTGA                                                                                >  SRR4302543.4655886/1‑94 (MQ=60)
                ATGCCGGAAATGATAATTGCGCCGATAATGCTGGTATCGAGGGTTTTAATCCCGGCCATCATTGTCAGACCGCTACCCGCCACCGCGTCCTGAG                                                                               <  SRR4302543.7206304/94‑1 (MQ=60)
                 TGCCGGAAATGATAATTGCGCCGATAATGCTGGTATCGAGGGTTTTAATCCCGGCCATCATTGTCAGACCGCTACCCGCCACCGCGTCCTGAGT                                                                              <  SRR4302543.1951829/94‑1 (MQ=60)
                  GCCGGAAATGATAATTGCGCCGATAATGCTGGTATCGAGGGTTTTAATCCCGGCCATCATTGTCAGACCGCTACCCGCCACCGCGTCCTGAGTG                                                                             >  SRR4302543.723201/1‑94 (MQ=60)
                   CCGGAAATGATAATTGCGCCGATAATGCTGGTATCGAGGGTTTTAATCCCGGCCATCATTGTCAGACCGCTACCCGCCACCGCGTCCTGAGTGA                                                                            >  SRR4302543.4186812/1‑94 (MQ=60)
                    CGGAAATGATAATTGCGCCGATAATGCTGGTATCGAGGGTTTTAATCCCGGCCATCATTGTCAGACCGCTACCCGCCACCGCGTCCTGAGTGAA                                                                           >  SRR4302543.5973169/1‑94 (MQ=60)
                     GGAAATGATAATTGCGCCGATAATGCTGGTATCGAGGGTTTTAATCCCGGCCATCATTGTCAGACCGCTACCCGCCACCGCGTCCTGAGTGAAA                                                                          >  SRR4302543.4957760/1‑94 (MQ=60)
                     GGAAATGATAATTGCGCCGATAATGCTGGTATCGAGGGTTTTAATCCCGGCCATCATTGTCAGACCGCTACCCGCCACCGCGTCCTGAGTGAAA                                                                          >  SRR4302543.2894619/1‑94 (MQ=60)
                      GAAATGATAATTGCGCCGATAATGCTGGTATCGAGGGTTTTAATCCCGGCCATCATTGTCAGACCGCTACCCGCCACCGCGTCCTGAGTGAAAT                                                                         <  SRR4302543.1084601/94‑1 (MQ=60)
                      GAAATGATAATTGCGCCGATAATGCTGGTATCGAGGGTTTTAATCCCGGCCATCATTGTCAGACCGCTACCCGCCACCGCGTCCTGAGTGAAAT                                                                         <  SRR4302543.5649900/94‑1 (MQ=60)
                       AAATGATAATTGCGCCGATAATGCTGGTATCGAGGGTTTTAATCCCGGCCATCATTGTCAGACCGCTACCCGCCACCGCGTCCTGAGTGAAATC                                                                        >  SRR4302543.6180280/1‑94 (MQ=60)
                       AAATGATAATTGCGCCGATAATGCTGGTATCGAGGGTTTTAATCCCGGCCATCATTGTCAGACCGCTACCCGCCACCGCGTCCTGAGTGAAATC                                                                        <  SRR4302543.1203389/94‑1 (MQ=60)
                       AAATGATAATTGCGCCGATAATGCTGGTATCGAGGGTTTTAATCCCGGCCATCATTGTCAGACCGCTACCCGCCACCGCGTCCTGAGTGAAATC                                                                        >  SRR4302543.44707/1‑94 (MQ=60)
                        AATGATAATTGCGCCGATAATGCTGGTATCGAGGGTTTTAATCCCGGCCATCATTGTCAGACCGCTACCCGCCACCGCGTCCTGAGTGAAATCG                                                                       <  SRR4302543.3257947/94‑1 (MQ=60)
                        AATGATAATTGCGCCGATAATGCTGGTATCGAGGGTTTTAATCCCGGCCATCATTGTCAGACCGCTACCCGCCACCGCGTCCTGAGTGAAATCG                                                                       >  SRR4302543.3119809/1‑94 (MQ=60)
                        AATGATAATTGCGCCGATAATGCTGGTATCGAGGGTTTTAATCCCGGCCATCATTGTCAGACCGCTACCCGCCACCGCGTCCTGAGTGAAATAG                                                                       >  SRR4302543.2159552/1‑94 (MQ=60)
                         ATGATAATTGCGCCGATAATGCTGGTATCGAGGGTTTTAATCCCGGCCATCATTGTCAGACCGCTACCCGCCACCGCGTCCTGAGTGAAATCGA                                                                      >  SRR4302543.2831384/1‑94 (MQ=60)
                          TGATAATTGCGCCGATAATGCTGGTATCGAGGGTTTTAATCCCGGCCATCATTGTCAGACCGCTACCCGCCACCGCGTCCTGAGTGAAATCGAC                                                                     <  SRR4302543.3593487/94‑1 (MQ=60)
                          TGATAATTGCGCCGATAATGCTGGTATCGAGGGTTTTAATCCCGGCCATCATTGTCAGACCGCTACCCGCCACCGCGTCCTGAGTGAAATCGAC                                                                     <  SRR4302543.5995812/94‑1 (MQ=60)
                          TGATAATTGCGCCGATAATGCTGGTATCGAGGGTTTTAATCCCGGCCATCATTGTCAGACCGCTACCCGCCACCGCGTCCTGAGTGAAATCGAC                                                                     <  SRR4302543.6534582/94‑1 (MQ=60)
                          TGATAATTGCGCCGATAATGCTGGTATCGAGGGTTTTAATCCCGGCCATCATTGTCAGACCGCTACCCGCCACCGCGTCCTGAGTGAAATCGAC                                                                     <  SRR4302543.1981994/94‑1 (MQ=60)
                          TGATAATTGCGCCGATAATGCTGGTATCGAGGGTTTTAATCCCGGCCATCATTGTCAGACCGCTACCCGCCACCGCGTCCTGAGTGAAATCGAC                                                                     >  SRR4302543.5038621/1‑94 (MQ=60)
                          TGATAATTGCGCCGATAATGCTGGTATCGAGGGTTTTAATCCCGGCCATCATTGTCAGACCGCTACCCGCCACCGCGTCCTGAGTGAAATCGAC                                                                     >  SRR4302543.2189302/1‑94 (MQ=60)
                          TGATAATTGCGCCGATAATGCTGGTATCGAGGGTTTTAATCCCGGCCATCATTGTCAGACCGCTACCCGCCACCGCGTCCTGAGTGAAATCGAC                                                                     <  SRR4302543.6698571/94‑1 (MQ=60)
                          TGATAATTGCGCCGATAATGCTGGTATCGAGGGTTTTAATCCCGGCCATCATTGTCAGACCGCTACCCGCCACCGCGTCCTGAGTGAAATCGAC                                                                     >  SRR4302543.5052969/1‑94 (MQ=60)
                           GATAATTGCGCCGATAATGCTGGTATCGAGGGTTTTAATCCCGGCCATCATTGTCAGACCGCTACCCGCCACCGCGTCCTGAGTGAAATCGACG                                                                    <  SRR4302543.4369339/94‑1 (MQ=60)
                           GATAATTGCGCCGATAATGCTGGTATCGAGGGTTTTAATCCCGGCCATCATTGTCAGACCGCTACCCGCCACCGCGTCCTGAGTGAAATCGACG                                                                    <  SRR4302543.3826993/94‑1 (MQ=60)
                           GATAATTGCGCCGATAATGCTGGTATCGAGGGTTTTAATCCCGGCCATCATTGTCAGACCGCTACCCGCCACCGCGTCCTGAGTGAAATCGACG                                                                    <  SRR4302543.2816937/94‑1 (MQ=60)
                            ATAATTGCGCCGATAATGCTGGTATCGAGGGTTTTAATCCCGGCCATCATTGTCAGACCGCTACCCGCCACCGCGTCCTGAGTGAAATCGACGC                                                                   >  SRR4302543.2661839/1‑94 (MQ=60)
                             TAATTGCGCCGATAATGCTGGTGTCGAGGGTTTTAATCCCGGCCATCATTGTCAGACCGCTACCCGCCACCGCGTCCTGAGCGAAATCGACGCC                                                                  >  SRR4302543.2684425/1‑94 (MQ=60)
                             TAATTGCGCCGATAATGCTGGTATCGAGGGTTTTAATCCCGGCCATCATTGTCAGACCGCTACCCGCCACCGCGTCCTGAGTGAAATCGACGCC                                                                  >  SRR4302543.2429111/1‑94 (MQ=60)
                             TAATTGCGCCGATAATGCTGGTATCGAGGGTTTTAATCCCGGCCATCATTGTCAGACCGCTACCCGCCACCGCGTCCTGAGTGAAATCGACGCC                                                                  <  SRR4302543.7798039/94‑1 (MQ=60)
                              AATTGCGCCGATAATGCTGGTATCGAGGGTTTTAATCCCGGCCATCATTGTCAGACCGCTACCCGCCACCGCGTCCTGAGTGAAATCGACGCCG                                                                 >  SRR4302543.7905756/1‑94 (MQ=60)
                                 TGCGCCGATAATGCTGGTATCGAGGGTTTTAATCCCGGCCATCATTGTCAGACCGCTACCCGCCACCGCGTCCTGAGTGAAATCGACGCCGAAG                                                              <  SRR4302543.4468396/94‑1 (MQ=60)
                                 TGCGCCGATAATGCTGGTATCGAGGGTTTTAATCCCGGCCATCATTGTCAGACCGCTACCCGCCACCGCGTCCTGAGTGAAATCGACGCCGAAG                                                              <  SRR4302543.7800004/94‑1 (MQ=60)
                                  GCGCCGATAATGGTGGTATCGAGGGTATTAATCCAGGCCATCATTGTCAGACCGCTACCCGCCACCGCGTCCTGAGTGAACTCGACGCCGAAGT                                                             <  SRR4302543.4733250/94‑1 (MQ=60)
                                  GCGCCGATAATGCTGGTATCGAGGGTTTTAATCCCGGCCATCATTGTCAGACCGCTACCCGCCACCGCGTCCTGAGTGAAATCGACGCCGAAGT                                                             >  SRR4302543.7297756/1‑94 (MQ=60)
                                  GCGCCGATAATGCTGGTATCGAGGGTTTTAATCCCGGCCATCATTGTCAGACCGCTACCCGCCACCGCGTCCTGAGTGAAATCGACGCCGAAGT                                                             <  SRR4302543.749922/94‑1 (MQ=60)
                                   CGCCGATAATGCTGGTATCGAGGGTTTTAATCCCGGCCATCATTGTCAGACCGCTACCCGCCACCGCGTCCTGAGTGAAATCGACGCCGAAGTA                                                            >  SRR4302543.440832/1‑94 (MQ=60)
                                   CGCCGATAATGCTGGTATCGAGGGTTTTAATCCCGGCCATCATTGTCAGACCGCTACCCGCCACCGCGTCCTGAGTGAAATCGACGCCGAAGTA                                                            >  SRR4302543.7884719/1‑94 (MQ=60)
                                    GCCGATAATGCTGGTATCGAGGGTTTTAATCCCGGCCATCATTGTCAGACCGCTACCCGCCACCGCGTCCTGAGTGAAATCGACGCCGAAGTAG                                                           <  SRR4302543.4525084/94‑1 (MQ=60)
                                     CCGATAATGCTGGTATCGAGGGTTTTAATCCCGGCCATCATTGTCAGACCGCTACCCGCCACCGCGTCCTGAGTGAAATCGACGCCGAAGTAGC                                                          <  SRR4302543.251554/94‑1 (MQ=60)
                                      CGATAATGCTGGTATCGAGGGTTTTAATCCCGGCCATCATTGTCAGACCGCTACCCGCCACCGCGTCCTGAGTGAAATCGACGCCGAAGTAGCT                                                         >  SRR4302543.3384244/1‑94 (MQ=60)
                                      CGATAATGCTGGTATCGAGGGTTTTAATCCCGGCCATCATTGTCAGACCGCTACCCGCCACCGCGTCCTGAGTGAAATCGACGCCGAAGTAGCT                                                         >  SRR4302543.4765901/1‑94 (MQ=60)
                                      CGATAATGCTGGTATCGAGGGTTTTAATCCCGGCCATCATTGTCAGACCGCTACCCGCCACCGCGTCCTGAGTGAAATCGACGCCGAAGTAGCT                                                         >  SRR4302543.1802397/1‑94 (MQ=60)
                                      CGATAATGCTGGTATCGAGGGTTTTAATCCCGGCCATCATTGTCAGACCGCTACCCGCCACCGCGTCCTGAGTGAAATCGACGCCGAAGTAGCT                                                         >  SRR4302543.745329/1‑94 (MQ=60)
                                      CGATAATGCTGGTATCGAGGGTTTTAATCCCGGCCATCATTGTCAGACCGCTACCCGCCACCGCGTCCTGAGTGAAATCGACGCCGAAGTAGCT                                                         >  SRR4302543.7812511/1‑94 (MQ=60)
                                      CGATAATGCTGGTATCGAGGGTTTTAATCCCGGCCATCATTGTCAGACCGCTACCCGCCACCGCGTCCTGAGTGAAATCGACGCCGAAGTAGCT                                                         >  SRR4302543.6584283/1‑94 (MQ=60)
                                       GATAATGCTGGTATCGAGGGTTTTAATCCCGGCCATCATTGTCAGACCGCTACCCGCCACCGCGTCCTGAGTGAAATCGACGCCGAAGTAGCTT                                                        >  SRR4302543.1181850/1‑94 (MQ=60)
                                       GATAATGCTGGTATCGAGGGTTTTAATCCCGGCCATCATTGTCAGACCGCTACCCGCCACCGCGTCCTGAGTGAAATCGACGCCGAAGTAGCTT                                                        >  SRR4302543.2840473/1‑94 (MQ=60)
                                       GATAATGCTGGTATCGAGGGTTTTAATCCCGGCCATCATTGTCAGACCGCTACCCGCCACCGCGTCCTGAGTGAAATCGACGCCGAAGTAGCTT                                                        >  SRR4302543.6295661/1‑94 (MQ=60)
                                       GATAATGCTGGTATCGAGGGTTTTAATCCCGGCCATCATTGTCAGACCGCTACCCGCCACCGCGTCCTGAGTGAAATCGACGCCGAAGTAGCTT                                                        >  SRR4302543.1984555/1‑94 (MQ=60)
                                        ATAATGCTGGTATCGAGGGTTTTAATCCCGGCCATCATTGTCAGACCGCTACCCGCCACCGCGTCCTGAGTGAAATCGACGCCGAAGTAGCTTC                                                       <  SRR4302543.4012752/94‑1 (MQ=60)
                                           ATGCTGGTATCGAGGGTTTTAATCCCGGCCATCATTGTCAGACCGCTACCCGCCACCGCGTCCTGAGTGAAATCGACGCCGAAGTAGCTTCCCC                                                    >  SRR4302543.331976/1‑94 (MQ=60)
                                           ATGCTGGTATCGAGGGTTTTAATCCCGGCCATCATTGTCAGACCGCTACCCGCCACCGCGTCCTGAGTGAAATCGACGCCGAAGTAGCTTCCCC                                                    >  SRR4302543.1506920/1‑94 (MQ=60)
                                            TGCTGGTATCGAGGGTTTTAATCCCGGCCATCATTGTCAGACCGCTACCCGCCACCGCGTCCTGAGTGAAATCGACGCCGAAGTAGCTTCCCCA                                                   >  SRR4302543.7970087/1‑94 (MQ=60)
                                            TGCTGGTATCGAGGGTTTTAATCCCGGCCATCATTGTCAGACCGCTACCCGCCACCGCGTCCTGAGTGAAATCGACGCCGAAGTAGCTTCCCCA                                                   <  SRR4302543.1078610/94‑1 (MQ=60)
                                             GCTGGTATCGAGGGTTTTAATCCCGGCCATCATTGTCAGACCGCTACCTGCCACCGCGTCCTGAGTGAAATCGACGCCGAAGTAGCTTCCCCAG                                                  <  SRR4302543.4149840/94‑1 (MQ=60)
                                             GCTGGTATCGAGGGTTTTAATCCCGGCCATCATTGTCAGACCGCTACCCGCCACCGCGTCCTGAGTGAAATCGACGCCGAAGTAGCTTCCCCAG                                                  >  SRR4302543.6206675/1‑94 (MQ=60)
                                             GCTGGTATCGAGGGTTTTAATCCCGGCCATCATTGTCAGACCGCTACCCGCCACCGCGTCCTGAGTGAAATCGACGCCGAAGTAGCTTCCCCAG                                                  <  SRR4302543.6598650/94‑1 (MQ=60)
                                              CTGGTATCGAGGGTTTTAATCCCGGCCATCATTGTCAGACCGCTACCCGCCACCGCGTCCTGAGTGAAATCGACGCCGAAGTAGCTTCCCCAGG                                                 <  SRR4302543.5473487/94‑1 (MQ=60)
                                              CTGGTATCGAGGGTTTTAATCCCGGCCATCATTGTCAGACCGCTACCCGCCACCGCGTCCTGAGTGAAATCGACGCCGAAGTAGCTTCCCCAGG                                                 >  SRR4302543.5790359/1‑94 (MQ=60)
                                               TGGTATCGAGGGTTTTAATCCCGGCCATCATTGTCAGACCGCTACCCGCCACCGCGTCCTGAGTGAAATCGACGCCGAAGTAGCTTCCCCAGGT                                                >  SRR4302543.1090497/1‑94 (MQ=60)
                                                GGTATCGAGGGTTTTAATCCCGGCCATCATTGTCAGACCGCTACCCGCCACCGCGTCCTGAGTGAAATCGACGCCGAAGTAGCTTCCCCAGGTC                                               <  SRR4302543.18527/94‑1 (MQ=60)
                                                  TATCGAGGGTTTTAATCCCGGCCATCATTGTCAGACCGCTACCCGCCACCGCGTCCTGAGTGAAATCGACGCCGAAGTAGCTTCCCCAGGTCAT                                             <  SRR4302543.178996/94‑1 (MQ=60)
                                                   ATCGAGGGTTTTAATCCCGGCCATCATTGTCAGACCGCTACCCGCCACCGCGTCCTGAGTGAAATCGACGCCGAAGTAGCTTCCCCAGGTCATT                                            >  SRR4302543.790907/1‑94 (MQ=60)
                                                   ATCGAGGGTTTTAATCCCGGCCATCATTGTCAGACCGCTACCCGCCACCGCGTCCTGAGTGAAATCGACGCCGAAGTAGCTTCCCCAGGTCATT                                            >  SRR4302543.4758565/1‑94 (MQ=60)
                                                   ATCGAGGGTTTTAATCCCGGCCATCATTGTCAGACCGCTACCCGCCACCGCGTCCTGAGTGAAATCGACGCCGAAGTAGCTTCCCCAGGTCATT                                            <  SRR4302543.7464406/94‑1 (MQ=60)
                                                   ATCGAGGGTTTTAATCCCGGCCATCATTGTCAGACCGCTACCCGCCACCGCGTCCTGAGTGAAATCGACGCCGAAGTAGCTTCCCCAGGTCATT                                            >  SRR4302543.4541150/1‑94 (MQ=60)
                                                   ATCGAGGGTTTTAATCCCGGCCATCATTGTCAGACCGCTACCCGCCACCGCGTCCTGAGTGAAATCGACGCCGAAGCAGCTTCCCCAGGTCATT                                            >  SRR4302543.7277055/1‑94 (MQ=60)
                                                     CGAGGGTTTTAATCCCGGCCATCATTGTCAGACCGCTACCCGCCACCGCGTCCTGAGTGAAATCGACGCCGAAGTAGCTTCCCCAGGTCATTCC                                          >  SRR4302543.1267407/1‑94 (MQ=60)
                                                     CGAGGGTTTTAATCCCGGCCATCATTGTCAGACCGCTACCCGCCACCGCGTCCTGAGTGAAATCGACGCCGAAGTAGCTTCCCCAGGTCATTCC                                          <  SRR4302543.5140147/94‑1 (MQ=60)
                                                      GAGGGTTTTAATCCCGGCCATCATTGTCAGACCGCTACCCGCCACCGCGTCCTGAGTGAAATCGACGCCGAAGTAGCTTCCCCAGGTCATTCCC                                         >  SRR4302543.3773801/1‑94 (MQ=60)
                                                      GAGGGTTTTAATCCCGGCCATCATTGTCAGACCGCTACCCGCCACCGCGTCCTGAGTGAAATCGACGCCGAAGTAGCTTCCCCAGGTCATTCCC                                         >  SRR4302543.3773800/1‑94 (MQ=60)
                                                      GAGGGTTTTAATCCCGGCCATCATTGTCAGACCGCTACCCGCCACCGCGTCCTGAGTGAAATCGACGCCGAAGTAGCTTCCCCAGGTCATTCCC                                         >  SRR4302543.2320212/1‑94 (MQ=60)
                                                       AGGGTTTTAATCCCGGCCATCATTGTCAGACCGCTACCCGCCACCGCGTCCTGAGTGAAATCGACGCCGAAGTAGCTTCCCCAGGTCATTCCCA                                        >  SRR4302543.4634201/1‑94 (MQ=60)
                                                       AGGGTTTTAATCCCGGCCATCATTGTCAGACCGCTACCCGCCACCGCGTCCTGAGTGAAATCGACGCCGAAGTAGCTTCCCCAGGTCATTCCCA                                        >  SRR4302543.1740455/1‑94 (MQ=60)
                                                        GGGTTTTAATCCCGGCCATCATTGTCAGACCGCTACCCGCCACCGCGTCCTGAGTGAAATCGACGCCGAAGTAGCTTCCCCAGGTCATTCCCAT                                       <  SRR4302543.4202500/94‑1 (MQ=60)
                                                        GGGTTTTAATCCCGGCCATCATTGTCAGACCGCTACCCGCCACCGCGTCCTGAGTGAAATCGACGCCGAAGTAGCTTCCCCAGGTCATTCCCAT                                       <  SRR4302543.769418/94‑1 (MQ=60)
                                                         GGTTTTAATCCCGGCCATCATTGTCAGACCGCTACCCGCCACCGCGTCCTGAGTGAAATCGACGCCGAAGTAGCTTCCCCAGGTCATTCCCATC                                      >  SRR4302543.2390917/1‑94 (MQ=60)
                                                         GGTTTTAATCCCGGCCATCATTGTCAGACCGCTACCCGCCACCGCGTCCTGAGTGAAATCGACGCCGAAGTAGCTTCCCCAGGTCATTCCCATC                                      >  SRR4302543.6326735/1‑94 (MQ=60)
                                                         GGTTTTAATCCCGGCCATCATTGTCAGACCGCTACCCGCCACCGCGTCCTGAGTGAAATCGACGCCGAAGTAGCTTCCCCAGGTCATTCCCATC                                      >  SRR4302543.5644376/1‑94 (MQ=60)
                                                          GTTTTAATCCCGGCCATCATTGTCAGACCGCTACCCGCCACCGCGTCCTGAGTGAAATCGACGCCGAAGTAGCTTCCCCAGGTCATTCCCATCG                                     <  SRR4302543.407755/94‑1 (MQ=60)
                                                          GTTTTAATCCCGGCCATCATTGTCAGACCGCTACCCGCCACCGCGTCCTGAGTGAAATCGACGCCGAAGTAGCTTCCCCAGGTCATTCCCATCG                                     >  SRR4302543.7342629/1‑94 (MQ=60)
                                                            TTTAATCCCGGCCATCATTGTCAGACCGCTACCCGCCACCGCGTCCTGAGTGAAATCGACGCCGAAGTAGCTTCCCCAGGTCATTCCCATCGCG                                   >  SRR4302543.3690223/1‑94 (MQ=60)
                                                              TAATCCCGGCCATCATTGTCAGACCGCTACCCGCCACCGCGTCCTGAGTGAAATCGACGCCGAAGTAGCTTCCCCAGGTCATTCCCATCGCGTT                                 <  SRR4302543.2855446/94‑1 (MQ=60)
                                                              TAATCCCGGCCATCATTGTCAGACCGCTACCCGCCACCGCGTCCTGAGTGAAATCGACGCCGAAGTAGCTTCCCCAGGTCATTCCCATCGCGTT                                 <  SRR4302543.3326409/94‑1 (MQ=60)
                                                              TAATCCCGGCCATCATTGTCAGACCGCTACCCGCCACCGCGTCCTGAGTGAAATCGACGCCGAAGTAGCTTCCCCAGGTCATTCCCATCGCGTT                                 <  SRR4302543.3773568/94‑1 (MQ=60)
                                                              TAATCCCGGCCATCATTGTCAGACCGCTACCCGCCACCGCGTCCTGAGTGAAATCGACGCCGAAGTAGCTTCCCCAGGTCATTCCCATCGCGTT                                 <  SRR4302543.7195106/94‑1 (MQ=60)
                                                              TAATCCCGGCCATCATTGTCAGACCGCTACCCGCCACCGCGTCCTGAGTGAAATCGACGCCGAAGTAGCTTCCCCAGGTCATTCCCATAGCGTT                                 >  SRR4302543.1542556/1‑94 (MQ=60)
                                                              TAATCCCGGCCATCATTGTCAGACCGCTACCCGCCACCGCGTCCTGAGGGAAATCGACGCCGAAGTAGCTTCCCCAGGTCATTCCCATCGCGTT                                 <  SRR4302543.1812963/94‑1 (MQ=60)
                                                              TAATCCCCGCCATCATTGTCAGACCGCTACCCGCCACCGCGTCCTGAGTGAAATCGACGCCGAAGTAGCTTCCCCATGTCATTCCCATCGCGTT                                 <  SRR4302543.815180/94‑1 (MQ=60)
                                                              TAATCCCCGCCATCATTGTCAGACCGCTACCCGCCACCGCGTCCTGAGTGAAATCGACGCCGAAGTAGCTTCCCCAGGTCATTCCCATCGCGTT                                 <  SRR4302543.815179/94‑1 (MQ=60)
                                                               AATCCCGGCCATCATTGTCAGACCGCTACCCGCCACCGCGTCCTGAGTGAAATCGACGCCGAAGTAGCTTCCCCAGGTCATTCCCATCGCGTTG                                >  SRR4302543.6767865/1‑94 (MQ=60)
                                                               AATCCCGGCCATCATTGTCAGACCGCTACCCGCCACCGCGTCCTGAGTGAAATCGACGCCGAAGTAGCTTCCCCAGGTCATTCCCATCGCGTTG                                >  SRR4302543.7963092/1‑94 (MQ=60)
                                                               AATCCCGGCCATCATTGTCAGACCGCTACCCGCCACCGCGTCCTGAGTGAAATCGACGCCGAAGTAGCTTCCCCAGGTCATTCCCATCGCGTTG                                <  SRR4302543.5259213/94‑1 (MQ=60)
                                                                ATCCCGGCCATCATTGTCAGACCGCTACCCGCCACCGCGTCCTGAGTGAAATCGACGCCGAAGTAGCTTCCCCAGGTCATTCCCATCGCGTTGA                               <  SRR4302543.3653025/94‑1 (MQ=60)
                                                                ATCCCGGCCATCATTGTCAGACCGCTACCCGCCACCGCGTCCTGAGTGAAATCGACGCCGAAGTAGCTTCCCCAGGTCATTCCCATCGCGTTGA                               >  SRR4302543.4742602/1‑94 (MQ=60)
                                                                 TCCCGGCCATCATTGTCAGACCGCTACCCGCCACCGCGTCCTGAGTGAAATCGACGCCGAAGTAGCTTCCCCAGGTCATTCCCATCGCGTTGAT                              <  SRR4302543.5141027/94‑1 (MQ=60)
                                                                 TCCCGGCCATCATTGTCAGACCGCTACCCGCCACCGCGTCCTGAGTGAAATCGACGCCGAAGTAGCTTCCCCAGGTCATTCCCATCGCGTTGAT                              >  SRR4302543.42782/1‑94 (MQ=60)
                                                                  CCCGGCCATCATTGTCAGACCGCTACCCGCCACCGCGTCCTGAGTGAAATCGACGCCGAAGTAGCTTCCCCAGGTCATTCCCATCGCGTTGATG                             <  SRR4302543.2289569/94‑1 (MQ=60)
                                                                  CCCGGCCATCATTGTCAGACCGCTACCCGCCACCGCGTCCTGAGTGAAATCGACGCCGAAGTAGCTTCCCCAGGTCATTCCCATCGCGTTGATG                             <  SRR4302543.2444155/94‑1 (MQ=60)
                                                                  CCCGGCCATCATTGTCAGACCGCTACCCGCCACCGCGTCCTGAGTGAAATCGACGCCGAAGTAGCTTCCCCAGGTCATTCCCATCGCGTTGATG                             >  SRR4302543.2706485/1‑94 (MQ=60)
                                                                  CCCGGCCATCATTGTCAGACCGCTACCCGCCACCGCGTCCTGAGTGAAATCGACGCCGAAGTAGCTTCCCCAGGTCATTCCCATCGCGTTGATG                             <  SRR4302543.6778275/94‑1 (MQ=60)
                                                                  CCCGGCCATCATTGTCAGACCGCTACCCGCCACCGCGTCCTGAGTGAAATCGACGCCGAAGTAGCTTCCCCAGGTCATTCCCATCGCGTTGATG                             >  SRR4302543.2352959/1‑94 (MQ=60)
                                                                    CGGCCATCATTGTCAGACCGCTACCCGCCACCGCGTCCTGAGTGACATCGACGCCGAAGTAACTTCCCCACGTCATTCCCATCCCGTTGATGAA                           >  SRR4302543.2673374/1‑94 (MQ=60)
                                                                    CGGCCATCATTGTCAGACCGCTACCCGCCACCGCGTCCTGAGTGAAATCGACGCCGAAGTAGCTTCCCCAGGTCATTCCCATCGCGTTGATGAA                           <  SRR4302543.2266453/94‑1 (MQ=60)
                                                                    CGGCCATCATTGTCAGACCGCTACCCGCCACCGCGTCCTGAGTGAAATCGACGCCGAAGTAGCTTCCCCAGGTCATTCCCATCGCGTTGATGAA                           <  SRR4302543.2242722/94‑1 (MQ=60)
                                                                    CGGCCATCATTGTCAGACCGCTACCCGCCACCGCGTCCTGAGTGAAATCGACGCCGAAGTAGCTTCCCCAGGTCATTCCCATCGCGTTGATGAA                           <  SRR4302543.7941664/94‑1 (MQ=60)
                                                                     GGCCATCATTGTCAGACCGCTACCCGCCACCGCGTCCTGAGTGAAATCGACGCCGAAGTAGCTTCCCCAGGTCATTCCCATCGCGTTGATGAAA                          >  SRR4302543.4796548/1‑94 (MQ=60)
                                                                      GCCATCATTGTCAGACCGCTACCCGCCACCGCGTCCTGAGTGAAATCGACGCCGAAGTAGCTTCCCCAGGTCATTCCCATCGCGTTGATGAAAT                         <  SRR4302543.6372273/94‑1 (MQ=60)
                                                                      GCCATCATTGTCAGACCGCTACCCGCCACCGCGTCCTGAGTGAAATCGACGCCGAAGTAGCTTCCCCAGGTCATTCCCATCGCGTTGATGAAAT                         <  SRR4302543.4023934/94‑1 (MQ=60)
                                                                      GCCATCATTGTCAGACCGCTACCCGCCACCGCGTCCTGAGTGAAATCGACGCCGAAGTAGCTTCCCCAGGTCATTCCCATCGCGTTGATGAAAT                         >  SRR4302543.7051067/1‑94 (MQ=60)
                                                                      GCCATCATTGTCAGACCGCTACCCGCCACCGCGGCCTGAGTGAAATCGACGCCGAAGTAGCTTCCCCAGGTCATTCCCATCGCGTTGATGAAAT                         <  SRR4302543.3920622/94‑1 (MQ=60)
                                                                       CCATCATTGTCAGACCGCTACCCGCCACCGCGTCCTGAGTGAAATCGACGCCGAAGTAGCTTCCCCAGGTCATTCCCATCGCGTTGATGAAATA                        >  SRR4302543.5248497/1‑94 (MQ=60)
                                                                       CCATCATTGTCAGACCGCTACCCGCCACCGCGTCCTGAGTGAAATCGACGCCGAAGTAGCTTCCCCAGGTCATTCCCATCGCGTTGATGAAATA                        >  SRR4302543.6410653/1‑94 (MQ=60)
                                                                        CATCATTGTCAGACCGCTACCCGCCACCGCGTCCTGAGTGAAATCGACGCCGAAGTAGCTTCCCCAGGTCATTCCCATCGCGTTGATGAAATAT                       >  SRR4302543.6919317/1‑94 (MQ=60)
                                                                        CATCATTGTCAGACCGCTACCCGCCACCGCGTCCTGAGTGAAATCGACGCCGAAGTAGCTTCCCCAGGTCATTCCCATCGCGTTGATGAAATAG                       >  SRR4302543.2148086/1‑94 (MQ=60)
                                                                        CATCATTGTCAGACCGCTACCCGCCACCGCGTCCTGAGTGAAATCGACGCCGAAGTAGCTTCCCCAGGTCATTCCCATCGCGTTGATGAAATAG                       >  SRR4302543.1482904/1‑94 (MQ=60)
                                                                        CATCATTGTCAGACCGCTACCCGCCACCGCGTCCTGAGTGAAATCGACGCCGAAGTAGCTTCCCCAGGTCATTCCCATCGCGTTGATGAAATAG                       <  SRR4302543.1651532/94‑1 (MQ=60)
                                                                        CATCATTGTCAGACCGCTACCCGCCACCGCGTCCTGAGTGAAATCGACGCCGAAGTAGCTTCCCCAGGTCATTCCCATCGCGTTGATGAAATAG                       <  SRR4302543.2799798/94‑1 (MQ=60)
                                                                        CATCATTGTCAGACCGCTACCCGCCACCGCGTCCTGAGTGAAATCGACGCCGAAGTAGCTTCCCCAGGTCATTCCCATCGCGTTGATGAAATAG                       <  SRR4302543.690800/94‑1 (MQ=60)
                                                                         ATCATTGTCAGACCGCTACCCGCCACCGCGTCCTGAGTGAAATCGACGCCGAAGTAGCTTCCCCAGGTCATTCCCATCGCGTTGATGAAATAGT                      >  SRR4302543.7589328/1‑94 (MQ=60)
                                                                         ATCATTGTCAGACCGCTACCCGCCACCGCGTCCTGAGTGAAATCGACGCCGAAGTAGCTTCCCCAGGTCATTCCCATCGCGTTGATGAAATAGT                      >  SRR4302543.799729/1‑94 (MQ=60)
                                                                         ATCATTGTCAGACCGCTACCCGCCACCGCGTCCTGAGTGAAATCGACGCCGAAGTAGCTTCCCCAGGTCATTCCCATCGCGTTGATGAAATAGT                      >  SRR4302543.5420027/1‑94 (MQ=60)
                                                                         ATCATTGTCAGACCGCTACCCGCCACCGCGTCCTGAGTGAAATCGACGCCGAAGTAGCTTCCCCAGGTCATTCCCATCGCGTTGATGAAATAGT                      >  SRR4302543.7589329/1‑94 (MQ=60)
                                                                         ATCATTGTCAGACCGCTACCCGCCACCGCGTCCTGAGTGAAATCGACGCCGAAGTAGCTTCCCCAGGTCATTCCCATCGCGTTGATGAAATAGT                      >  SRR4302543.3247870/1‑94 (MQ=60)
                                                                         ATCATTGTCAGACCGCTACCCGCCACCGCGTCCTGAGTGAAATCGACGCCGAAGTAGCTTCCCCAGGTCATTCCCATCGCGTTGATGAAATAGT                      >  SRR4302543.3263316/1‑94 (MQ=60)
                                                                          TCATTGTCAGACCGCTACCCGCCACCGCGTCCTGAGTGAAATCGACGCCGAAGTAGCTTCCCCAGGTCATTCCCATCGCGTTGATGAAATAGTT                     <  SRR4302543.517049/94‑1 (MQ=60)
                                                                           CATTGTCAGACCGCTACCCGCCACCGCGTCCTGAGTGAAATCGACGCCGAAGTAGCTTCCCCAGGTCATTCCCATCGCGTTGATGAAATAGTTC                    >  SRR4302543.6971167/1‑94 (MQ=60)
                                                                           CATTGTCAGACCGCTACCCGCCACCGCGTCCTGAGTGAAATCGACGCCGAAGTAGCTTCCCCAGGTCATTCCCATCGCGTTGATGAAATAGTTC                    >  SRR4302543.7417423/1‑94 (MQ=60)
                                                                           CATTGTCAGACCGCTACCCGCCACCGCGTCCTGAGTGAAATCGACGCCGAAGTAGCTTCCCCAGGTCATTCCCATCGCGTTGATGAAATAGTTC                    >  SRR4302543.1425984/1‑94 (MQ=60)
                                                                           CATTGTCAGACCGCTACCCGCCACCGCGTCCTGAGTGAAATCGACGCCGAAGTAGCTTCCCCAGGTCATTCCCATCGCGTTGATGAAATAGTTC                    <  SRR4302543.3143890/94‑1 (MQ=60)
                                                                            ATTGTCAGACCGCTACCCGCCACCGCGTCCTGAGTGAAATCGACGCCGAAGTAGCTTCCCCAGGTCATTCCCATCGCGTTGATGAAATAGTTCC                   >  SRR4302543.7615711/1‑94 (MQ=60)
                                                                            ATTGTCAGACCGCTACCCGCCACCGCGTCCTGAGTGAAATCGACGCCGAAGTAGCTTCCCCAGGTCATTCCCATCGCGTTGATGAAATAGTTCC                   >  SRR4302543.1171315/1‑94 (MQ=60)
                                                                            ATTGTCAGACCGCTACCCGCCACCGCGTCCTGAGTGAAATCGACGCCGAAGTAGCTTCCCCAGGTCATTCCCATCGCGTTGATGAAATAGTTCC                   <  SRR4302543.3015358/94‑1 (MQ=60)
                                                                            ATTGTCAGACCGCTACCCGCCACCGCGTCCTGAGTGAAATCGACGCCGAAGTAGCTTCCCCAGGTCATTCCCATCGCGTTGATGAAATAGTTCC                   >  SRR4302543.4159588/1‑94 (MQ=60)
                                                                            ATTGTCAGACCGCTACCCGCCACCGCGTCCTGAGTGAAATCGACGCCGAAGTAGCTTCCCCAGGTCATTCCCATCGCGTTGATGAAATAGTTCC                   <  SRR4302543.435748/94‑1 (MQ=60)
                                                                            ATTGTCAGACCGCTACCCGCCACCGCGTCCTGAGTGAAATCGACGCCGAAGTAGCTTCCCCAGGTCATTCCCATCGCGTTGATGAAATAGTTCC                   <  SRR4302543.465588/94‑1 (MQ=60)
                                                                            ATTGTCAGACCGCTACCCGCCACCGCGTCCTGAGTGAAATCGACGCCGAAGTAGCTTCCCCAGGTCATTCCCATCGCGTTGATGAAATAGTTCC                   <  SRR4302543.77654/94‑1 (MQ=60)
                                                                            ATTGTCAGACCGCTACCCGCCACCGCGTCCTGAGTGAAATCGACGCCGAAGTAGCTTCCCCAGGTCATTCCCATCGCGTTGATGAAATAGTTCC                   <  SRR4302543.4936677/94‑1 (MQ=60)
                                                                            ATTGTCAGACCGCTACCCGCCACCGCGTCCTGAGTGAAATCGACGCCGAAGTAGCTTCCCCAGGTCATTCCCATCGCGATGATGAAATAGTTCC                   >  SRR4302543.6860031/1‑94 (MQ=60)
                                                                              TGTCAGACCGCTACCCGCCACCGCGTCCTGAGTGAAATCGACGCCGAAGTAGCTTCCCCAGGTCATTCCCATCGCGTTGATGAAATAGTTCCAG                 <  SRR4302543.6525837/94‑1 (MQ=60)
                                                                              TGTCAGACCGCTACCCGCCACCGCGTCCTGAGTGAAATCGACGCCGAAGTAGCTTCCCCAGGTCATTCCCATCGCGTTGATGAAATAGTTCCAG                 <  SRR4302543.2115667/94‑1 (MQ=60)
                                                                               TTCAGACCGCTACCCGCCACCGCGTCCTGAGTCAAATCGACGCCGAAGTAGCTTCCCCAGGTCATTCCCATCGCGTTGATGAAATAGTTCCAGG                <  SRR4302543.4157674/94‑1 (MQ=60)
                                                                               GTCAGACCGCTACCCGCCACCGCGTCCTGAGTGAAATCGACGCCGAAGTAGCTTCCCCAGGTCATTCCCATCGCGTTGATGAAATAGTTCCAGG                <  SRR4302543.933407/94‑1 (MQ=60)
                                                                               GTCAGACCGCTACCCGCCACCGCGTCCTGAGTGAAATCGACGCCGAAGTAGCTTCCCCAGGTCATTCCCATCGCGTTGATGAAATAGTTCCAGG                <  SRR4302543.1019098/94‑1 (MQ=60)
                                                                               GTCAGACCGCTACCCGCCACCGCGTCCTGAGTGAAATCGACGCCGAAGTAGCTTCCCCAGGTCATTCCCATCGCGTTGATGAAATAGTTCCAGG                <  SRR4302543.4992721/94‑1 (MQ=60)
                                                                                 CAGACCGCTACCCGCCACCGCGTCCTGAGTGAAATCGACGCCGAAGTAGCTTCCCCAGGTCATTCCCATCGCGTTGATGAAATAGTTCCAGGTC              >  SRR4302543.4712747/1‑94 (MQ=60)
                                                                                  AGACCGCTACCCGCCACCGCGTCCTGAGTGAAATCGACGCCGACGTAGCTTCCCCAGGTCATTCCCATCGCGTTGATGAAATAGTTCCAGGTCA             >  SRR4302543.4225718/1‑94 (MQ=60)
                                                                                  AGACCGCTACCCGCCACCGCGTCCTGAGTGAAATCGACGCCGAAGTAGCTTCCCCAGGTCATTCCCATCGCGTTGATGAAATAGTTCCAGGTCA             >  SRR4302543.5408951/1‑94 (MQ=60)
                                                                                   GACCGCTACCCGCCACCGCGTCCTGAGTGAAATCGACGCCGAAGTAGCTTCCCCAGGTCATTCCCATCGCGTTGATGAAATAGTTCCAGGTCAG            <  SRR4302543.6633941/94‑1 (MQ=60)
                                                                                   GACCGCTACCCGCCACCGCGTCCTGAGTGAAATCGACGCCGAAGTAGCTTCCCCAGGTCATTCCCATCGCGTTGATGAAATAGTTCCAGGTCAG            <  SRR4302543.642944/94‑1 (MQ=60)
                                                                                    gtCGCTACCCGCCACCGCGTCCTGAGTGAAATCGACGCCGAAGTAGCTTCCCCAGGTCATTCCCATCGCGTTGATGAAATAGTTCCAGGCCAGG           <  SRR4302543.7515301/92‑1 (MQ=60)
                                                                                    ACCGCTACCCGCCACCGCGTCCTGAGTGAAATCGACGCCGAAGTAGCTTCCCCAGGTCATTCCCATCGCGTTGATGAAATAGTTCCAGGTCAGG           >  SRR4302543.7904839/1‑94 (MQ=60)
                                                                                    ACCGCTACCCGCCACCGCGTCCTGAGTGAAATCGACGCCGAAGTAGCTTCCCCAGGTCATTCCCATCGCGTTGATGAAATAGTTCCAGGTCAGG           <  SRR4302543.4118769/94‑1 (MQ=60)
                                                                                    ACCGCTACCCGCCACCGCGTCCTGAGTGAAATCGACGCCGAAGTAGCTTCCCCAGGTCATTCCCATCGCGTTGATGAAATAGTTCCAGGTCAGG           <  SRR4302543.4799413/94‑1 (MQ=60)
                                                                                     CCGCTACCCGCCACCGCGTCCTGAGTGAAATCGACGCCGAAGTAGCTTCCCCAGGTCATTCCCATCGCGTTGATGAAATAGTTCCAGGTCAGGA          >  SRR4302543.3293510/1‑94 (MQ=60)
                                                                                      CGCTACCCGCCACCGCGTCCTGAGTGAAATCGACGCCGAAGTAGCTTCCCCAGGTCATTCCCATCGCGTTGATGAAATAGTTCCAGGTCAGGAA         >  SRR4302543.1014244/1‑94 (MQ=60)
                                                                                      CGCTACCCGCCACCGCGTCCTGAGTGAAATCGACGCCGAAGTAGCTTCCCCAGGTCATTCCCATCGCGTTGATGAAATAGTTCCAGGTCAGGAA         >  SRR4302543.4361505/1‑94 (MQ=60)
                                                                                       CCTACCCGCCACCGCGTCCTGAGTGAAATCGACGCCGAAGTAGCTTCCCCAGGTCATTCCCATCGCGTTGATGAAATAGTTCCAGGTCAGGAAA        <  SRR4302543.5897118/94‑1 (MQ=60)
                                                                                        CTACCCGCCACCGCGTCCTGAGTGAAATCGACGCCGAAGTAGCTTCCCCAGGTCATTCCCATCGCGTTGATGAAATAGTTCCAGGTCAGGAAAC       >  SRR4302543.7579524/1‑94 (MQ=60)
                                                                                        CTACCCGCCACCGCGTCCTGAGTGAAATCGACGCCGAAGTAGCTTCCCCAGGTCATTCCCATCGCGTTGATGAAATAGTTCCAGGTCAGGAAAC       >  SRR4302543.5970800/1‑94 (MQ=60)
                                                                                        CTACCCGCCACCGCGTCCTGAGTGAAATCGACGCCGAAGTAGCTTCCCCAGGTCATTCCCATCGCGTTGATGAAATAGTTCCAGGTCAGGAAAC       <  SRR4302543.130268/94‑1 (MQ=60)
                                                                                        CTACCCGCCACCGCGTCCTGAGTGAAATCGACGCCGAAGTAGCTTCCCCAGGTCATTCCCATCGCGTTGATGAAATAGTTCCAGGTCAGGAAAC       >  SRR4302543.2173121/1‑94 (MQ=60)
                                                                                        CTACCCGCCACCGCGTCCTGAGTGAAATCGACGCCGAAGTAGCTTCCCCAGGTCATTCCCATCGCGTTGATGAAATAGTTCCAGGTCAGGAAAC       <  SRR4302543.2501241/94‑1 (MQ=60)
                                                                                         TACCCGCCACCGCGTCCTGAGTGAAATCGACGCCGAAGTAGCTTCCCCAGGTCATTCCCATCGCGTTGATGAAATAGTTCCAGGTCAGGAAACT      >  SRR4302543.6868921/1‑94 (MQ=60)
                                                                                         TACCCGCCACCGCGTCCTGAGTGAAATCGACGCCGAAGTAGCTTCCCCAGGTCATTCCCATCGCGTTGATGAAATAGTTCCAGGTCAGGAAACT      >  SRR4302543.6682525/1‑94 (MQ=60)
                                                                                         TACCCGCCACCGCGTCCTGAGTGAAATCGACGCCGAAGTAGCTTCCCCAGGTCATTCCCATCGCGTTGATGAAATAGTTCCAGGTCAGGAAACT      <  SRR4302543.39543/94‑1 (MQ=60)
                                                                                          ACCCGCCACCGCGTCCTGAGTGAAATCGACGCCGAAGTAGCTTCCCCAGGTCATTCCCATCGCGTTGATGAAATAGTTCCAGGTCAGGAAACTC     >  SRR4302543.3851621/1‑94 (MQ=60)
                                                                                          ACCCGCCACCGCGTCCTGAGTGAAATCGACGCCGAAGTAGCTTCCCCAGGTCATTCCCATCGCGTTGATGAAATAGTTCCAGGTCAGGAAACTC     >  SRR4302543.7426845/1‑94 (MQ=60)
                                                                                          ACCCGCCACCGCGTCCTGAGTGAAATCGACGCCGAAGTAGCTTCCCCAGGTCATTCCCATCGCGTTGATGAAATAGATCCACGTCAGGAAACTC     >  SRR4302543.7426847/1‑94 (MQ=60)
                                                                                          ACCCGCCACCGCGTCCTGAGTGAAATCGACGCCGAAGTAGCTTCCCCAGGTCATTACCATCGCGTTGATGAAATAGTTCCAGGTCAGGAAACTC     >  SRR4302543.6193224/1‑94 (MQ=60)
                                                                                           CCCGCCACCGCGTCCTGAGTGAAATCGACGCCGAAGTAGCTTCCCCAGGTCATTCCCATCGCGTTGATGAAATAGTTCCAGGTCAGGAAACTCA    <  SRR4302543.7359076/94‑1 (MQ=60)
                                                                                           CCCGCCACCGCGTCCTGAGTGAAATCGACGCCGAAGTAGCTTCCCCAGGTCATTCCCATCGCGTTGATGAAATAGTTCCAGGTCAGGAAACTCA    <  SRR4302543.5581553/94‑1 (MQ=60)
                                                                                            CCGCCACCGCGTCCTGAGTGAAATCGACGCCGAAGTAGCTTCCCCAGGTCATTCCCATCGCGTTGATGAAATAGTTCCAGGTCAGGAAACTCAC   >  SRR4302543.1632611/1‑94 (MQ=60)
                                                                                            CCGCCACCGCGTCCTGAGTGAAATCGACGCCGAAGTAGCTTCCCCAGGTCATTCCCATCGCGTTGATGAAATAGTTCCAGGTCAGGAAACTCAC   <  SRR4302543.4505455/94‑1 (MQ=60)
                                                                                             CGCCACCGCGTCCTGAGTGAAATCGACGCCGAAGTAGCTTCCCCAGGTCATTCCCATCGCGTTGATGAAATAGTTCCAGGTCAGGAAACTCACC  >  SRR4302543.295620/1‑94 (MQ=60)
                                                                                             |                                                                                             
ATGCAGCGCCGTCACAATGCCGGAAATGATAATTGCGCCGATAATGCTGGTATCGAGGGTTTTAATCCCGGCCATCATTGTCAGACCGCTACCTGCCACCGCGTCCTGAGTGAAATCGACGCCGAAGTAGCTTCCCCAGGTCATTCCCATCGCGTTGATGAAATAGTTCCAGGTCAGGAAACTCACC  >  NC_000913/3860769‑3860955

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: