Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I1 R1 1696 279.3 15874187 97.8% 15524954 93.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,873,493 T→C C124C (TGT→TGC)  yidX → putative replicase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,873,4930TC99.8% 1609.2 / ‑5.6 502C124C (TGT→TGC) yidXputative replicase
Reads supporting (aligned to +/- strand):  ref base T (0/1);  new base C (234/266);  total (235/267)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.35e-01

Only 100 of 507 total aligned reads displayed.

CGGCACAATATCGCTTTACTACTACTGGAATAACGAAGAAGAAAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGTACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACATGGATTACTCAAAGGTGATGGCGTTCTACCATCCATT  >  NC_000913/3873403‑3873582
                                                                                          |                                                                                         
cGGCACAATATCGCTTTACTACTACTGGAATAACGAAGAAGAAAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCAc                                                                                         <  2:7379740/93‑1 (MQ=255)
 ggCACAATATCGCTTTACTACTACTGGAATAACGAAGAAGAAAAGGCACTGGCAACGCTTTATGGTTTTGCCTGTGGTGTTCAACACTGCAcc                                                                                        <  1:3035214/93‑1 (MQ=255)
  gCACAATATCGCTTTACTACTACTGGAATAACGAAGAAGAAAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCa                                                                                       >  1:5538222/1‑93 (MQ=255)
     caATATTGGTTTACTACTACTGGAATAACGAAGCAGAAAACGGCCTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGt                                                                                    <  1:3844357/93‑1 (MQ=255)
      aaTATCGCTTTACTACTACTGGAATAACGAAGAAGAAAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTc                                                                                   >  1:7510912/1‑93 (MQ=255)
      aaTATCGCTTTACTACTACTGGAATAACGAAGAAGAAAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTc                                                                                   <  1:4831326/93‑1 (MQ=255)
       atatCGCTTTACTACTACTGGAATAACGAAGAAGAAAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCa                                                                                  >  2:134626/1‑93 (MQ=255)
       atatCGCTTTACTACTACTGGAATAACGAAGAAGAAAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCa                                                                                  <  1:2291162/93‑1 (MQ=255)
        tatCGCTTTACTACTACTGGAATAACGAAGAAGAAAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCAc                                                                                 >  1:4380158/1‑93 (MQ=255)
        tatCGCTTTACTACTACTGGAATAACGAAGAAGAAAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCAc                                                                                 <  1:1871549/93‑1 (MQ=255)
          tCGCTTTACTACTACTGGAATAACGAAGAAGAAAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTg                                                                               <  2:4305138/93‑1 (MQ=255)
            gCTTTACTACTACTGGAATAACGAAGAAGAAAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGa                                                                             >  1:921289/1‑93 (MQ=255)
                tactactacTGGAAGAACGAAGAAGAAAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAAc                                                                         <  1:3736124/93‑1 (MQ=255)
                  ctactactGGAATAACGAAGAAGAAAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCt                                                                       <  1:2617603/93‑1 (MQ=255)
                   tactactGGAATAACGAAGAAGAAAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTa                                                                      >  2:6593963/1‑93 (MQ=255)
                    actactGGAATAACGAAGAAGAAAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTaa                                                                     <  2:4466406/93‑1 (MQ=255)
                     ctactGGAATAACGAAGAAGAAAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTaaa                                                                    <  2:7931227/93‑1 (MQ=255)
                      tgctGGAATAACGAAGAAGAAAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTaaaa                                                                   <  1:1982863/91‑1 (MQ=255)
                      tactGGAATAACGAAGAAGAAAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTaaaa                                                                   <  1:3548478/93‑1 (MQ=255)
                      tactGGAATAACGAAGAAGAAAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTaaaa                                                                   >  2:1588456/1‑93 (MQ=255)
                      tactGGAATAACGAAGAAGAAAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTaaaa                                                                   >  1:5891899/1‑93 (MQ=255)
                      tactGGAATAACGAAGAAGAAAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTaaaa                                                                   <  2:5412555/93‑1 (MQ=255)
                      tactGGAATAACGAAGAAGAAAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTaaaa                                                                   <  2:5691081/93‑1 (MQ=255)
                        ctGGAATAACGAAGAAGAAAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAgg                                                                 >  2:3941799/1‑93 (MQ=255)
                        ctGGAATAACGAAGAAGAAAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAgg                                                                 <  2:3443186/93‑1 (MQ=255)
                         tGGAATAACGAAGAAGAAAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGc                                                                <  2:5902349/93‑1 (MQ=255)
                         tGGAATAACGAAGAAGAAAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGc                                                                <  1:2426226/93‑1 (MQ=255)
                         tGGAATAACGAAGAAGAAAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGc                                                                >  1:5751014/1‑93 (MQ=255)
                          ggAATAACGAAGAAGAAAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGca                                                               <  1:160436/93‑1 (MQ=255)
                           gAATAACGAAGAAGAAAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGcaa                                                              >  2:6676972/1‑92 (MQ=255)
                             aTAACGAAGAAGAAAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACaa                                                            <  2:4033523/93‑1 (MQ=255)
                             aTAACGAAGAAGAAAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACaa                                                            <  2:7860651/93‑1 (MQ=255)
                                 cGAAGAAGAAAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCa                                                        <  1:4243506/93‑1 (MQ=255)
                                 cGAAGAAGAAAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCa                                                        <  2:3718400/93‑1 (MQ=255)
                                  gaagaagaaAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCAt                                                       <  1:860278/93‑1 (MQ=255)
                                  gaagaagaaAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCAt                                                       <  2:6419006/93‑1 (MQ=255)
                                    agaagaaAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATga                                                     >  1:4152499/1‑93 (MQ=255)
                                    agaagaaAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATga                                                     <  1:5466754/93‑1 (MQ=255)
                                     gaagaaAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATgag                                                    >  2:5220884/1‑93 (MQ=255)
                                     gaagaaAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATgag                                                    >  1:7869357/1‑93 (MQ=255)
                                     gaagaaAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATgag                                                    >  1:2813919/1‑93 (MQ=255)
                                      aagaaAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATgaga                                                   >  2:1065326/1‑93 (MQ=255)
                                       agaaAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGaa                                                  >  1:4993330/1‑93 (MQ=255)
                                        gaaAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGaaa                                                 >  2:4719937/1‑93 (MQ=255)
                                        gaaAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGaaa                                                 >  1:6149110/1‑93 (MQ=255)
                                        gaaAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGaaa                                                 <  1:659942/93‑1 (MQ=255)
                                        aaaaaGGCACTGGCAACGGATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGaaa                                                 <  1:3809805/92‑1 (MQ=255)
                                         aaaaGGCACTGGCAACGCATTATGGTTTTGCTTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGaaaa                                                >  2:6812205/1‑93 (MQ=255)
                                          aaaGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGaaaaa                                               <  2:1811490/93‑1 (MQ=255)
                                          aaaGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGaaaaa                                               >  2:5549477/1‑93 (MQ=255)
                                               cACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATaaaa                                          >  1:2720823/1‑93 (MQ=255)
                                                aCTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATaaaaa                                         >  1:1001408/1‑93 (MQ=255)
                                                 cTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAAc                                        >  1:780068/1‑93 (MQ=255)
                                                  tGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACa                                       <  1:2876871/93‑1 (MQ=255)
                                                  tGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACa                                       <  1:6864370/93‑1 (MQ=255)
                                                  tGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACa                                       <  2:6163347/93‑1 (MQ=255)
                                                   ggCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAACCCTAAAAGGCACAATCCATGAGAAAAATAAAAACAt                                      <  1:5080130/93‑1 (MQ=255)
                                                   ggCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACAt                                      <  2:2352335/93‑1 (MQ=255)
                                                    gCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACATg                                     <  1:168994/93‑1 (MQ=255)
                                                     cAACACATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACATgg                                    <  2:2947348/93‑1 (MQ=255)
                                                      aaCGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACATGGa                                   <  2:4150964/93‑1 (MQ=255)
                                                      aaCGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACATGGa                                   >  2:3542372/1‑93 (MQ=255)
                                                      aaCGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACATGGa                                   >  1:6354993/1‑93 (MQ=255)
                                                      aaCGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACATGGa                                   <  2:2753562/93‑1 (MQ=255)
                                                      aaCGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACATGGa                                   <  2:2461528/93‑1 (MQ=255)
                                                      aaCGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACATGGa                                   >  1:4517440/1‑93 (MQ=255)
                                                       aCGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACATGGAt                                  >  2:7305694/1‑93 (MQ=255)
                                                       aCGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACATGGAt                                  >  1:5298634/1‑93 (MQ=255)
                                                        cGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACATGGAtt                                 >  2:2220331/1‑93 (MQ=255)
                                                          cATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACATGGATTAc                               <  1:5990376/93‑1 (MQ=255)
                                                           aTTAAGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACATGGATTACt                              >  1:1280199/1‑93 (MQ=255)
                                                            ttATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACATGGATTACTc                             >  1:5899675/1‑93 (MQ=255)
                                                            ttATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACATGGATTACTc                             >  1:5231408/1‑93 (MQ=255)
                                                            ttATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACATGGATTACTc                             >  1:1107856/1‑93 (MQ=255)
                                                            ttATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACATGGATTACTc                             >  2:2112593/1‑93 (MQ=255)
                                                             tATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACATGGATTACTCa                            <  2:1247177/93‑1 (MQ=255)
                                                               tGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCGCAATCCATGAGAAAAATAAAAACATGGATTACTCaaa                          <  2:706202/93‑1 (MQ=255)
                                                               tGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACATGGATTACTCaaa                          <  2:3277426/93‑1 (MQ=255)
                                                               tGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACATGGATTACTCaaa                          >  1:7117304/1‑93 (MQ=255)
                                                                ggTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACATGGATTACTCAAAg                         <  2:6484076/93‑1 (MQ=255)
                                                                ggTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACATGGATTACTCAAAg                         <  2:7523262/93‑1 (MQ=255)
                                                                 gTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACATGGATTACTCAAAgg                        <  2:5113493/93‑1 (MQ=255)
                                                                 gTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACATGGATTACTCAAAgg                        <  2:7698025/93‑1 (MQ=255)
                                                                  ttttGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACATGGATTACTCAAAGGt                       >  1:6543474/1‑93 (MQ=255)
                                                                   tttGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACATGGATTACTCAAAGGTg                      <  1:478911/93‑1 (MQ=255)
                                                                   tttGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACATGGATTACTCAAAGGTg                      >  1:6970956/1‑93 (MQ=255)
                                                                    ttGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACATGGATTACTCAAAGGTGa                     <  2:5011586/93‑1 (MQ=255)
                                                                        cTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACATGGATTACTCAAAGGTGATGGc                 >  1:7259068/1‑93 (MQ=255)
                                                                          gtggtgTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACATGGATTACTCAAAGGTGATGGCGt               <  1:2199881/93‑1 (MQ=255)
                                                                             gtgtTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATGAAAACATGGATTACTCAAAGGTGATGGCGTTCt            >  1:6232099/1‑93 (MQ=255)
                                                                             gtgtTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACATGGATTACTCAAAGGTGATGGCGTTCt            >  1:3211170/1‑93 (MQ=255)
                                                                               gtTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACATGGATTACTCAAAGGTGATGGCGTTCTAc          <  1:7591636/93‑1 (MQ=255)
                                                                                ttCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACATGGATTACTCAAAGGTGATGGCGTTCTAcc         <  1:467806/93‑1 (MQ=255)
                                                                                   aaCACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACACGGATTACTCAAAGGTGATGGCGTTCTAccatc      <  1:1407748/93‑1 (MQ=255)
                                                                                    acacTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACATGGATTACTCAAAGGTGATGGCGTTCTAccatcc     >  2:197164/1‑93 (MQ=255)
                                                                                    acacTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACATGGATTACTCAAAGGTGATGGCGTTCTAccatcc     <  2:3202809/93‑1 (MQ=255)
                                                                                     cacTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACATGGATTACTCAAAGGTGATGGCGTTCTAccatcca    <  1:3411882/93‑1 (MQ=255)
                                                                                      acTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACATGGATTACTCAAAGGTGATGGCGTTCTAccatccat   <  2:633783/93‑1 (MQ=255)
                                                                                      acTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACATGGATTACTCAAAGGTGATGGCGTTCTAccatccat   >  2:4582624/1‑93 (MQ=255)
                                                                                       cTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACATGGATTACTCAAAGGTGATGGCGTTCTACCATCCAtt  <  2:2674150/93‑1 (MQ=255)
                                                                                          |                                                                                         
CGGCACAATATCGCTTTACTACTACTGGAATAACGAAGAAGAAAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGTACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACATGGATTACTCAAAGGTGATGGCGTTCTACCATCCATT  >  NC_000913/3873403‑3873582

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

BRESEQ :: bam2aln output Only 200 of 278 total aligned reads displayed.
ACCGGCACAATATCGCTTTACTACTACTGGAATAACGAAGAAGAAAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGTACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACATGGATTACTCAAAGGTGATGGCGTTCTACCATCCATTTAAA  >  NC_000913/3873401‑3873586
                                                                                            |                                                                                             
ACCGGCACAATATCGCTTTACTACTACTGGAATAACGAAGAAGAAAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCA                                                                                              >  SRR4302543.4710702/1‑94 (MQ=60)
ACCGGCACAATATCGCTTTACTACTACTGGAATAACGAAGAAGAAAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCA                                                                                              <  SRR4302543.385221/94‑1 (MQ=60)
  CGGCACAATATCGCTTTACTACTACTGGAATAACGAAGAAGAAAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACC                                                                                            >  SRR4302543.499316/1‑94 (MQ=60)
  CGGCACAATATCGCTTTACTACTACTGGAATAACGAAGAAGAAAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACC                                                                                            >  SRR4302543.1252130/1‑94 (MQ=60)
  CGGCACAATATCGCTTTACTACTACTGGAATAACGAAGAAGAAAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACC                                                                                            >  SRR4302543.1052612/1‑94 (MQ=60)
   GGCACAATATCGCTTTACTACTACTGGAATAACGAAGAAGAAAAGGCACTGGCAACGCTTTATGGTTTTGCCTGTGGTGTTCAACACTGCACCA                                                                                           <  SRR4302543.3062609/94‑1 (MQ=60)
   GGCACAATATCGCTTTACTACTACTGGAATAACGAAGAAGAAAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCA                                                                                           >  SRR4302543.5588576/1‑94 (MQ=60)
     CACAATATCGCTTTACTACTACTGGAATAACGAAGAAGAAAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGG                                                                                         >  SRR4302543.4744281/1‑94 (MQ=60)
     CACAATATCGCTTTACTACTACTGGAATAACGAAGAAGAAAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGG                                                                                         <  SRR4302543.4322628/94‑1 (MQ=60)
      ACAATATCGCTTTACTACTACTGGAATAACGAAGAAGAAAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGT                                                                                        >  SRR4302543.430517/1‑94 (MQ=60)
      ACAATATCGCTTTACTACTACTGGAATAACGAAGAAGAAAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGT                                                                                        <  SRR4302543.6475544/94‑1 (MQ=60)
       CAATATTGGTTTACTACTACTGGAATAACGAAGCAGAAAACGGCCTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTC                                                                                       <  SRR4302543.3878303/94‑1 (MQ=60)
       CAATATCGCTTTACTACTACTGGAATAACGAAGAAGAAAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTC                                                                                       >  SRR4302543.1099007/1‑94 (MQ=60)
       CAATATCGCTTTACTACTACTGGAATAACGAAGAAGAAAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTC                                                                                       >  SRR4302543.1997595/1‑94 (MQ=60)
       CAATATCGCTTTACTACTACTGGAATAACGAAGAAGAAAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTC                                                                                       >  SRR4302543.4939658/1‑94 (MQ=60)
        AATATCGCTTTACTACTACTGGAATAACGAAGAAGAAAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCA                                                                                      <  SRR4302543.6016008/94‑1 (MQ=60)
        AATATCGCTTTACTACTACTGGAATAACGAAGAAGAAAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCA                                                                                      <  SRR4302543.4875402/94‑1 (MQ=60)
        AATATCGCTTTACTACTACTGGAATAACGAAGAAGAAAAGGCACTGGCAACGCATTATGGTTTTACCTGTGGTGTTCAACACTGCACCAGGTCA                                                                                      <  SRR4302543.1311401/94‑1 (MQ=60)
         ATATCGCTTTACTACTACTGGAATAACGAAGAAGAAAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCAC                                                                                     <  SRR4302543.2312073/94‑1 (MQ=60)
         ATATCGCTTTACTACTACTGGAATAACGAAGAAGAAAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCAC                                                                                     >  SRR4302543.4419864/1‑94 (MQ=60)
         ATATCGCTTTACTACCACTGGAATAACGAAGAAGAAAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCAC                                                                                     >  SRR4302543.5334715/1‑94 (MQ=60)
          TATCGCTTTACTACTACTGGAATAACGAAGAAGAAAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACT                                                                                    <  SRR4302543.1888362/94‑1 (MQ=60)
          TATCGCTTTACTACTACTGGAATAACGAAGAAGAAAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACT                                                                                    <  SRR4302543.6034285/94‑1 (MQ=60)
          TATCGCTTTACTACTACTGGAATAACGAAGAAGAAAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACT                                                                                    <  SRR4302543.6034284/94‑1 (MQ=60)
          TATCGCTTTACTACTACTGGAATAACGAAGAAGAAAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACT                                                                                    <  SRR4302543.6704344/94‑1 (MQ=60)
            TCGCTTTACTACTACTGGAATAACGAAGAAGAAAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGG                                                                                  <  SRR4302543.3076157/94‑1 (MQ=60)
            TCGCTTTACTACTACTGGAATAACGAAGAAGAAAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGG                                                                                  >  SRR4302543.2600791/1‑94 (MQ=60)
            TCGCTTTACTACTACTGGAATAACGAAGAAGAAAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGG                                                                                  >  SRR4302543.2600790/1‑94 (MQ=60)
             CGCTTTACTACTACTGGAATAACGAAGAAGAAAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGA                                                                                 >  SRR4302543.929350/1‑94 (MQ=60)
               CTTTACTACTACTGGAATAACGAAGAAGAAAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAA                                                                               >  SRR4302543.3275968/1‑94 (MQ=60)
                TTTACTACTACTGGAATAACGAAGAAGAAAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAA                                                                              >  SRR4302543.7705806/1‑94 (MQ=60)
                 TTACTACTACTGGAATAACGAAGAAGAAAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAAC                                                                             >  SRR4302543.4247051/1‑94 (MQ=60)
                 TTACTACTACTGGAATAACGAAGAAGAAAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAAC                                                                             >  SRR4302543.2055455/1‑94 (MQ=60)
                  TACTACTACTGGAATAACGAAGAAGAAAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACC                                                                            >  SRR4302543.1457790/1‑94 (MQ=60)
                   ACTACTACTGGAATAACGAAGAAGAAAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCT                                                                           >  SRR4302543.2921837/1‑94 (MQ=60)
                    CTACTACTGGAATAACGAAGAAGAAAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTA                                                                          <  SRR4302543.3772786/94‑1 (MQ=60)
                    CTACTACTGGAATAACGAAGAAGAAAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTA                                                                          <  SRR4302543.2641337/94‑1 (MQ=60)
                      ACTACTGGAATAACGAAGAAGAAAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAA                                                                        >  SRR4302543.5229752/1‑94 (MQ=60)
                      ACTACTGGAATAACGAAGAAGAAAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAA                                                                        >  SRR4302543.3336306/1‑94 (MQ=60)
                       CTACTGGAATAACGAAGAAGAAAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAA                                                                       <  SRR4302543.4369267/94‑1 (MQ=60)
                       CTACTGGAATAACGAAGAAGAAAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAA                                                                       >  SRR4302543.5945619/1‑94 (MQ=60)
                        TACTGGAATAACGAAGAAGAAAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAgagtggagatc                                                                      >  SRR4302543.1306976/1‑83 (MQ=60)
                        TACTGGAATAACGAAGAAGAAAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAG                                                                      <  SRR4302543.7318610/94‑1 (MQ=60)
                        TACTGGAATAACGAAGAAGAAAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAG                                                                      >  SRR4302543.7595689/1‑94 (MQ=60)
                        TACTGGAATAACGAAGAAGAAAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAG                                                                      <  SRR4302543.3579969/94‑1 (MQ=60)
                         ACTGGAATAACGAAGAAGAAAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGG                                                                     <  SRR4302543.2101542/94‑1 (MQ=60)
                          CTGGAATAACGAAGAAGAAAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGC                                                                    <  SRR4302543.2131994/94‑1 (MQ=60)
                          CTGGAATAACGAAGAAGAAAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGC                                                                    <  SRR4302543.6341654/94‑1 (MQ=60)
                          CTGGAATAACGAAGAAGAAAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGC                                                                    >  SRR4302543.2302401/1‑94 (MQ=60)
                           TGGAATAACGAAGAAGAAAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCA                                                                   <  SRR4302543.2448121/94‑1 (MQ=60)
                           TGGAATAACGAAGAAGAAAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCA                                                                   <  SRR4302543.1846656/94‑1 (MQ=60)
                            GGAATAACGAAGAAGAAAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCAC                                                                  <  SRR4302543.6238092/94‑1 (MQ=60)
                            GGAATAACGAAGAAGAAAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCAC                                                                  <  SRR4302543.161809/94‑1 (MQ=60)
                            GGAATAACGAAGAAGAAAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCAC                                                                  >  SRR4302543.936956/1‑94 (MQ=60)
                            GGAATAACGAAGAAGAAAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCAC                                                                  <  SRR4302543.6238093/94‑1 (MQ=60)
                            GGAATAACGAAGAAGAAAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCAC                                                                  >  SRR4302543.834574/1‑94 (MQ=60)
                             GAATAACGAAGAAGAGAAGGCACTGGCATCGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAACGGCCCA                                                                 <  SRR4302543.7084642/94‑1 (MQ=60)
                             GAATAACGAAGAAGAAAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACA                                                                 >  SRR4302543.7097/1‑94 (MQ=60)
                              AATAACGAAGAAGAAAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAA                                                                <  SRR4302543.3872266/94‑1 (MQ=60)
                              AATAACGAAGAAGAAAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAA                                                                <  SRR4302543.3628674/94‑1 (MQ=60)
                              AATAACGAAGAAGAAAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAA                                                                <  SRR4302543.5179381/94‑1 (MQ=60)
                               ATAACGAAGAAGAAAAGGCACTGGCAACGCATTATTGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAAT                                                               <  SRR4302543.5834803/94‑1 (MQ=60)
                               ATAACGAAGAAGAAAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAAT                                                               <  SRR4302543.6479535/94‑1 (MQ=60)
                               ATAACGAAGAAGAAAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAAT                                                               <  SRR4302543.5952179/94‑1 (MQ=60)
                               ATAACGAAGAAGAAAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAAT                                                               <  SRR4302543.5952180/94‑1 (MQ=60)
                               ATAACGAAGAAGAAAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAAT                                                               <  SRR4302543.5320147/94‑1 (MQ=60)
                                 AACGAAGAAGAAAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCC                                                             >  SRR4302543.6198721/1‑94 (MQ=60)
                                 AACGAAGAAGAAAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCC                                                             >  SRR4302543.869108/1‑94 (MQ=60)
                                   CGAAGAAGAAAAGGCACTGGCGACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCAT                                                           <  SRR4302543.2407416/94‑1 (MQ=60)
                                   CGAAGAAGAAAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCAT                                                           <  SRR4302543.518830/94‑1 (MQ=60)
                                   CGAAGAAGAAAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCAT                                                           <  SRR4302543.4282013/94‑1 (MQ=60)
                                    GAAGAAGAAAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATG                                                          >  SRR4302543.4841050/1‑94 (MQ=60)
                                    GAAGAAGAAAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATG                                                          <  SRR4302543.5870892/94‑1 (MQ=60)
                                     AAGAAGAAAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGA                                                         >  SRR4302543.4190040/1‑94 (MQ=60)
                                     AAGAAGAAAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGA                                                         >  SRR4302543.1595215/1‑94 (MQ=60)
                                     AAGAAGAAAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGA                                                         >  SRR4302543.1213786/1‑94 (MQ=60)
                                      AGAAGAAAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAG                                                        >  SRR4302543.754215/1‑94 (MQ=60)
                                      AGAAGAAAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAG                                                        >  SRR4302543.5945776/1‑94 (MQ=60)
                                      AGAAGAAAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAG                                                        >  SRR4302543.7943454/1‑94 (MQ=60)
                                      AGAAGAAAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAG                                                        <  SRR4302543.5516286/94‑1 (MQ=60)
                                      AGAAGAAAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAG                                                        >  SRR4302543.2839693/1‑94 (MQ=60)
                                      AGAAGAAAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAG                                                        <  SRR4302543.2241399/94‑1 (MQ=60)
                                       GAAGAAAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGA                                                       <  SRR4302543.6652351/94‑1 (MQ=60)
                                       GAAGAAAAGGCACTGGCAACGCATTATGGTTTTGCCTGGGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGA                                                       <  SRR4302543.3043724/94‑1 (MQ=60)
                                        AAGAAAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAA                                                      >  SRR4302543.5038785/1‑94 (MQ=60)
                                        AAGAAAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAA                                                      <  SRR4302543.6610716/94‑1 (MQ=60)
                                        AAGAAAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAA                                                      <  SRR4302543.4860448/94‑1 (MQ=60)
                                         AGAAAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAA                                                     >  SRR4302543.346986/1‑94 (MQ=60)
                                         AGAAAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAA                                                     >  SRR4302543.6207336/1‑94 (MQ=60)
                                         AGAAAAGGCACTGGCAACGCATGATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAA                                                     <  SRR4302543.2796944/94‑1 (MQ=60)
                                          GAAAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAA                                                    <  SRR4302543.3843389/94‑1 (MQ=60)
                                          AAAAAGGCACTGGCAACGGATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAA                                                    <  SRR4302543.3843388/94‑1 (MQ=60)
                                             AAGCCACTGGCAACGCATTATGGTTTTGCCTGTGGCGTTCAACACTGCACAAGGTCACTGGAAAACCTACAAGGCACAATCCATGAGAAAAATA                                                 >  SRR4302543.3159411/1‑94 (MQ=60)
                                              AGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAA                                                >  SRR4302543.4893973/1‑94 (MQ=60)
                                              AGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAA                                                <  SRR4302543.1162971/94‑1 (MQ=60)
                                                GCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAA                                              >  SRR4302543.4720372/1‑94 (MQ=60)
                                                 CACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAA                                             >  SRR4302543.1010254/1‑94 (MQ=60)
                                                 CACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAA                                             >  SRR4302543.408142/1‑94 (MQ=60)
                                                 CACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAA                                             >  SRR4302543.1621162/1‑94 (MQ=60)
                                                  ACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAAC                                            <  SRR4302543.2628124/94‑1 (MQ=60)
                                                  ACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAAC                                            >  SRR4302543.786922/1‑94 (MQ=60)
                                                  ACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAAC                                            <  SRR4302543.1646512/94‑1 (MQ=60)
                                                   CTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACA                                           <  SRR4302543.1709241/94‑1 (MQ=60)
                                                    TGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACAT                                          <  SRR4302543.3656126/94‑1 (MQ=60)
                                                    TGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACAT                                          <  SRR4302543.2903053/94‑1 (MQ=60)
                                                    TGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACAT                                          <  SRR4302543.6929046/94‑1 (MQ=60)
                                                    TGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACAT                                          <  SRR4302543.8006111/94‑1 (MQ=60)
                                                    TGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACAT                                          <  SRR4302543.5069248/94‑1 (MQ=60)
                                                     GGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAACCCTAAAAGGCACAATCCATGAGAAAAATAAAAACATG                                         <  SRR4302543.5126208/94‑1 (MQ=60)
                                                     GGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACATG                                         <  SRR4302543.103580/94‑1 (MQ=60)
                                                     GGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACATG                                         <  SRR4302543.5126207/94‑1 (MQ=60)
                                                      GCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACATGG                                        <  SRR4302543.4854483/94‑1 (MQ=60)
                                                      GCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACATGG                                        <  SRR4302543.170444/94‑1 (MQ=60)
                                                       CAACTCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACATGGA                                       >  SRR4302543.5843176/1‑94 (MQ=60)
                                                       CAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACATGGA                                       <  SRR4302543.1905616/94‑1 (MQ=60)
                                                        AACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACATGGAT                                      <  SRR4302543.874437/94‑1 (MQ=60)
                                                        AACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACATGGAT                                      >  SRR4302543.5346464/1‑94 (MQ=60)
                                                        AACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACATGGAT                                      <  SRR4302543.7253903/94‑1 (MQ=60)
                                                        AACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACATGGAT                                      >  SRR4302543.3173596/1‑94 (MQ=60)
                                                         ACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACATGGATT                                     <  SRR4302543.7253884/94‑1 (MQ=60)
                                                         ACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACATGGATT                                     >  SRR4302543.2663824/1‑94 (MQ=60)
                                                         ACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACATGGATT                                     >  SRR4302543.4541417/1‑94 (MQ=60)
                                                         ACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACATGGATT                                     <  SRR4302543.6758736/94‑1 (MQ=60)
                                                         ACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACATGGATT                                     <  SRR4302543.5621391/94‑1 (MQ=60)
                                                          CGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACATGGATTA                                    >  SRR4302543.2858255/1‑94 (MQ=60)
                                                          CGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACATGGATTA                                    >  SRR4302543.5675119/1‑94 (MQ=60)
                                                            CATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACATGGATTACT                                  <  SRR4302543.7532224/94‑1 (MQ=60)
                                                            CATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACATGGATTACT                                  <  SRR4302543.7526336/94‑1 (MQ=60)
                                                             ATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACATGGATTACTC                                 >  SRR4302543.1117855/1‑94 (MQ=60)
                                                             ATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACATGGATTACTC                                 >  SRR4302543.5953491/1‑94 (MQ=60)
                                                             ATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACATGGATTACTC                                 >  SRR4302543.5051188/1‑94 (MQ=60)
                                                             ATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACATGGATTACTC                                 >  SRR4302543.5278541/1‑94 (MQ=60)
                                                             ATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACATGGATTACTC                                 >  SRR4302543.4670483/1‑94 (MQ=60)
                                                               TATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACATGGATTACTCAA                               <  SRR4302543.5799403/94‑1 (MQ=60)
                                                               TATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACATGGATTACTCAA                               >  SRR4302543.7984814/1‑94 (MQ=60)
                                                               TATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACATGGATTACTCAA                               >  SRR4302543.6107699/1‑94 (MQ=60)
                                                                ATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACATGGATTACTCAAA                              >  SRR4302543.7186446/1‑94 (MQ=60)
                                                                 TGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACATGGATTACTCAAAG                             <  SRR4302543.2286428/94‑1 (MQ=60)
                                                                  GGTTTTTCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACATGGATTACTCAAAGG                            <  SRR4302543.2725989/94‑1 (MQ=60)
                                                                  GGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACATGGATTACTCAAAGG                            <  SRR4302543.7937507/94‑1 (MQ=60)
                                                                  GGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACATGGATTACTCAAAGG                            <  SRR4302543.7734250/94‑1 (MQ=60)
                                                                  GGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACATGGATTACTCAAAGG                            >  SRR4302543.5351976/1‑94 (MQ=60)
                                                                   GTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACATGGATTACTCAAAGGT                           <  SRR4302543.1388703/94‑1 (MQ=60)
                                                                   GTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACATGGATTACTCAAAGGT                           >  SRR4302543.1882299/1‑94 (MQ=60)
                                                                   GTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACATGGATTACTCAAAGGT                           >  SRR4302543.6605059/1‑94 (MQ=60)
                                                                    TTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACATGGATTACTCAAAGGTG                          >  SRR4302543.7036558/1‑94 (MQ=60)
                                                                     TTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACATGGATTACTCAAAGGTGA                         <  SRR4302543.483336/94‑1 (MQ=60)
                                                                      TTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACATGGATTACTCAAAGGTGAT                        <  SRR4302543.3663754/94‑1 (MQ=60)
                                                                       TGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACATGGATTACTCAAAGGTGATG                       >  SRR4302543.2807602/1‑94 (MQ=60)
                                                                       TGCCTATGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACATGGATTACTCAAAGGTGATG                       <  SRR4302543.4795610/94‑1 (MQ=60)
                                                                        TCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACATGGATTACTCAAAGGTGATGG                      <  SRR4302543.2788047/94‑1 (MQ=60)
                                                                        GCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACATGGATTACTCAAAGGTGATGG                      <  SRR4302543.1977567/94‑1 (MQ=60)
                                                                         CCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACATGGATTACTCAAAGGTGATGGC                     >  SRR4302543.7611844/1‑94 (MQ=60)
                                                                         CCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACATGGATTACTCAAAGGTGATGGC                     >  SRR4302543.7329225/1‑94 (MQ=60)
                                                                         CCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACATGGATTACTCAAAGGTGATGGC                     >  SRR4302543.2979729/1‑94 (MQ=60)
                                                                         CCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACATGGATTACTCAAAGGTGATGGC                     >  SRR4302543.4503984/1‑94 (MQ=60)
                                                                          CTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACATGGATTACTCAAAGGTGATGGCG                    >  SRR4302543.6109153/1‑94 (MQ=60)
                                                                          CTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACATGGATTACTCAAAGGTGATGGCG                    <  SRR4302543.2697130/94‑1 (MQ=60)
                                                                           TGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACATGGATTACTCAAAGGTGATGGCGT                   >  SRR4302543.6429643/1‑94 (MQ=60)
                                                                           TGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACATGGATTACTCAAAGGTGATGGCGT                   >  SRR4302543.6806183/1‑94 (MQ=60)
                                                                           TGTGGTGTTCAACACTGCACCAGGNCACTGNAAAACNTAAAAGGCACAATCCATGAGAANAATAAAANNANGNNTTACNCAAAnngnangnngn                   >  SRR4302543.7807500/1‑83 (MQ=60)
                                                                            GTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACATGGATTACTCAAAGGTGATGGCGTT                  <  SRR4302543.5567902/94‑1 (MQ=60)
                                                                            GTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACATGGATTACTCAAAGGTGATGGCGTT                  <  SRR4302543.2869790/94‑1 (MQ=60)
                                                                            GTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACATGGATTACTCAAAGGTGATGGCGTT                  >  SRR4302543.892787/1‑94 (MQ=60)
                                                                            GTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACATGGATTACTCAAAGGTGATGGCGTT                  <  SRR4302543.2219670/94‑1 (MQ=60)
                                                                            GTGCTGTTCAACACTGCACCAGGTCACTGGAAATCCTAAAAGGCACAATCCATGAGAAAAATAAAAACATGGATTACTCAAAGGTGATGGCGTT                  <  SRR4302543.2869791/94‑1 (MQ=60)
                                                                             TGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACATGGATTACTCAAAGGTGATGGCGTTC                 <  SRR4302543.4576043/94‑1 (MQ=60)
                                                                             TGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACATGGATTACTCAAAGGTGATGGCGTTC                 >  SRR4302543.7029971/1‑94 (MQ=60)
                                                                              GGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATGAAAACATGGATTACTCAAAGGTGATGGCGTTCT                >  SRR4302543.6290916/1‑94 (MQ=60)
                                                                              GGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACATGGATTACTCAAAGGTGATGGCGTTCT                <  SRR4302543.4129643/94‑1 (MQ=60)
                                                                               GTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACATGGATTACTCAAAGGTGATGGCGTTCTA               >  SRR4302543.5534864/1‑94 (MQ=60)
                                                                               GTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACATGGATTACTCAAAGGTGATGGCGTTCTA               >  SRR4302543.7879713/1‑94 (MQ=60)
                                                                                 GTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACATGGATTACTCAAAGGTGATGGCGTTCTACC             <  SRR4302543.7663764/94‑1 (MQ=60)
                                                                                 GTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACATGGATTACTCAAAGGTGATGGCGTTCTACC             >  SRR4302543.6314705/1‑94 (MQ=60)
                                                                                  TTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACATGGATTACTCAAAGGTGATGGCGTTCTACCA            <  SRR4302543.3468275/94‑1 (MQ=60)
                                                                                  TTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACATGGATTACTCAAAGGTGATGGCGTTCTACCA            <  SRR4302543.472154/94‑1 (MQ=60)
                                                                                   TCAACACTGCACCATGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACATGGATTACTCAAAGGTGATGGCGTTCTACCAT           <  SRR4302543.3293584/94‑1 (MQ=60)
                                                                                   TCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACATGGATTACTCAAAGGTGATGGCGTTCTACCAT           <  SRR4302543.3830632/94‑1 (MQ=60)
                                                                                   TCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACATGGATTACTCAAAGGTGATGGCGTTCTACCAT           <  SRR4302543.2412476/94‑1 (MQ=60)
                                                                                   TCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACATGGATTACTCAAAGGTGATGGCGTTCTACCAT           <  SRR4302543.4526923/94‑1 (MQ=60)
                                                                                    CAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACATGGATTACTCAAAGGTGATGGCGTTCTACCATC          >  SRR4302543.3510426/1‑94 (MQ=60)
                                                                                    CAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACATGGATTACTCAAAGGTGATGGCGTTCTACCATC          >  SRR4302543.1552866/1‑94 (MQ=60)
                                                                                    CAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACATGGATTACTCAAAGGTGATGGCGTTCTACCATC          <  SRR4302543.7582893/94‑1 (MQ=60)
                                                                                     AACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACATGGATTACTCAAAGGTGATGGCGTTCTACCATCC         <  SRR4302543.5490963/94‑1 (MQ=60)
                                                                                     AACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACAGGGATTACTCAAAGGTGATGGCGTTCTACCATCC         <  SRR4302543.5490964/94‑1 (MQ=60)
                                                                                     AACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACACGGATTACTCAAAGGTGATGGCGTTCTACCATCC         <  SRR4302543.1420462/94‑1 (MQ=60)
                                                                                      ACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACATGGATTACTCAAAGGTGATGGCGTTCTACCATCCA        <  SRR4302543.4177559/94‑1 (MQ=60)
                                                                                      ACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACATGGATTACTCAAAGGTGATGGCGTTCTACCATCCA        <  SRR4302543.6945950/94‑1 (MQ=60)
                                                                                      ACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACATGGATTACTCAAAGGTGATGGCGTTCTACCATCCA        <  SRR4302543.6642084/94‑1 (MQ=60)
                                                                                      ACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACATGGATTACTCAAAGGTGATGGCGTTCTACCATCCA        >  SRR4302543.6614078/1‑94 (MQ=60)
                                                                                      ACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACATGGATTACTCAAAGGTGATGGCGTTCTACCATCCA        <  SRR4302543.6314458/94‑1 (MQ=60)
                                                                                       CACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACATGGATTACTCAAAGGTGATGGCGTTCTACCATCCAT       >  SRR4302543.4245231/1‑94 (MQ=60)
                                                                                       CACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACATGGATTACTCAAAGGTGATGGCGTTCTACCATCCAT       <  SRR4302543.3442426/94‑1 (MQ=60)
                                                                                       CACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACATGGATTACTCAAAGGTGATGGCGTTCTACCATCCAT       <  SRR4302543.3776173/94‑1 (MQ=60)
                                                                                        ACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACATGGATTACTCAAAGGTGATGGCGTTCTACCATCCATT      >  SRR4302543.7011953/1‑94 (MQ=60)
                                                                                           GCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACATGGATTACTCAAAGGTGATGGCGTTCTACCATCCATTTAA   >  SRR4302543.7672223/1‑94 (MQ=60)
                                                                                            CACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACATGGATTACTCAAAGGTGATGGCGTTCTACCATCCATTTAAA  <  SRR4302543.6111884/94‑1 (MQ=60)
                                                                                            CACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACATGGATTACTCAAAGGTGATGGCGTTCTACCATCCATTTAAA  <  SRR4302543.417838/94‑1 (MQ=60)
                                                                                            CACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACATGGATTACTCAAAGGTGATGGCGTTCTACCATCCATTTAAA  >  SRR4302543.574103/1‑94 (MQ=60)
                                                                                            CACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACATGGATTACTCAAAGGTGATGGCGTTCTACCATCCATTTAAA  <  SRR4302543.638374/94‑1 (MQ=60)
                                                                                            |                                                                                             
ACCGGCACAATATCGCTTTACTACTACTGGAATAACGAAGAAGAAAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGTACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACATGGATTACTCAAAGGTGATGGCGTTCTACCATCCATTTAAA  >  NC_000913/3873401‑3873586

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑