Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	1873	183.1	9376148	98.2%	9207377	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,873,493	T→C	C124C (TGT→TGC)	yidX →	putative replicase

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,873,493	0	T	C	100.0%	842.5 / NA	260	C124C (TGT→TGC)	yidX	putative replicase
Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (127/133); total (127/133)

Only 100 of 262 total aligned reads displayed.

CGGCACAATATCGCTTTACTACTACTGGAATAACGAAGAAGAAAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGTACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACATGGATTACTCAAAGGTGATGGCGTTCTACCATCCATT  >  NC_000913/3873403‑3873582

cGGCACAATATCGCTTTACTACTACTGGAATAACGAAGAAGAAAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCAc                                                                                         <  1:455895/93‑1 (MQ=255)

 ggCACAATATCGCTTTACTACTACTGGAATAACGAAGAAGAAAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCAcc                                                                                        <  1:4001855/93‑1 (MQ=255)

  gCACAATATCGCTTTACTACTACTGGAATAACGAAGAAGAAAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCa                                                                                       <  1:3607842/93‑1 (MQ=255)

    acaATATCGCTTTACTACTACTGGAATAACGAAGAAGAAAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAgg                                                                                     >  1:1444683/1‑93 (MQ=255)

      aaTATCGCTTTACTACTACTGGAATAACGAAGAAGAAAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTc                                                                                   >  2:2590807/1‑93 (MQ=255)

       atatCGCTTTACTACTACTGGAATAACGAAGAAGAAAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCa                                                                                  >  1:3087475/1‑93 (MQ=255)

       atatCGCTTTACTACTACTGGAATAACGAAGAAGAAAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCa                                                                                  >  2:3203110/1‑93 (MQ=255)

         atCGCTTTACTACTACTGGAATAACGAAGAAGAAAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACt                                                                                >  2:801898/1‑93 (MQ=255)

          tCGCTTTACTACTACTGGAATAACGAAGAAGAAAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTg                                                                               >  2:1130626/1‑93 (MQ=255)

          tCGCTTTACTACTACTGGAATAACGAAGAAGAAAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTg                                                                               <  1:1635824/93‑1 (MQ=255)

           cGCTTTACTACTACTGGAATAACGAAGAAGAAAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTgg                                                                              <  1:4207066/93‑1 (MQ=255)

           cGCTTTACTACTACTGGAATAACGAAGAAGAAAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTgg                                                                              <  1:2562413/93‑1 (MQ=255)

           cGCTTTACTACTACTGGAATAACGAAGAAGAAAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTgg                                                                              <  1:3930270/93‑1 (MQ=255)

            gCTTTACTACTACTGGAATAACGAAGAAGAAAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGa                                                                             >  1:2174071/1‑93 (MQ=255)

              tttACTACTACTGGAATAACGAAGAAGAAAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGaaa                                                                           >  2:178761/1‑93 (MQ=255)

              tttACTACTACTGGAATAACGAAGAAGAAAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGaaa                                                                           >  2:3223958/1‑93 (MQ=255)

               ttACTACTACTGGAATAACGAAGAAGAAAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGaaaa                                                                          >  2:3140226/1‑93 (MQ=255)

               ttACTACTACTGGAATAACGAAGAAGAAAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGaaaa                                                                          <  1:2362852/93‑1 (MQ=255)

               ttACTACTACTGGAATAACGAAGAAGAAAAGGCACTGGCAAAGCATAATAATTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTAGaaaa                                                                          <  2:4679758/93‑1 (MQ=255)

                tactactacTGGAATAACGAAGAAGAAAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAAc                                                                         >  2:938276/1‑93 (MQ=255)

                 actactactGGAATAACGAAGAAGAAAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAAcc                                                                        <  2:3596067/93‑1 (MQ=255)

                   tactactGGAATAACGAAGAAGAAAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTa                                                                      >  2:4233719/1‑93 (MQ=255)

                   tactactGGAATAACGAAGAAGAAAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTa                                                                      >  2:3969803/1‑93 (MQ=255)

                    tctactGGAATAACGAAGAAGAAAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTaa                                                                     <  2:2651993/92‑1 (MQ=255)

                    actactGGAATAACGAAGAAGAAAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTaa                                                                     <  2:2266379/93‑1 (MQ=255)

                     ctactGGAATAACGAAGAAGAAAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTaaa                                                                    <  1:4267498/93‑1 (MQ=255)

                      tactGGAATAACGAAGAAGAAAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTaaaa                                                                   >  2:230476/1‑93 (MQ=255)

                      tactGGAATAACGAAGAAGAAAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTaaaa                                                                   <  1:2684551/93‑1 (MQ=255)

                      tactGGAATAACGAAGAAGAAAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTaaaa                                                                   <  1:3114610/93‑1 (MQ=255)

                      tactGGAATAACGAAGAAGAAAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTaaaa                                                                   <  1:2470838/93‑1 (MQ=255)

                      tactGGAATAACGAAGAAGAAAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTaaaa                                                                   >  2:4653890/1‑93 (MQ=255)

                      tactGGAATAACGAAGAAGAAAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTaaaa                                                                   >  2:1535546/1‑93 (MQ=255)

                      tactGGAATAACGAAGAAGAAAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTaaaa                                                                   >  2:2780665/1‑93 (MQ=255)

                       actGGAATAACGAAGAAGAAAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAg                                                                  <  2:3723357/93‑1 (MQ=255)

                         tGGAATAACGAAGAAGAAAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGc                                                                >  2:816284/1‑93 (MQ=255)

                          ggAATAACGAAGAAGAAAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGca                                                               >  2:3401177/1‑93 (MQ=255)

                          ggAATAACGAAGAAGAAAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGca                                                               >  2:3030906/1‑93 (MQ=255)

                          ggAATAACGAAGAAGAAAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGca                                                               >  1:3436690/1‑93 (MQ=255)

                           gAATAACGAAGAAGAAAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGcac                                                              >  1:4603939/1‑93 (MQ=255)

                             aTAACGAAGAAGAAAAGGCACTGGCAACGCATTATGGTTTTGTCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACaa                                                            >  1:1553014/1‑93 (MQ=255)

                             aTAACGAAGAAGAAAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACaa                                                            >  1:1457571/1‑93 (MQ=255)

                                aCGAAGAAGAAAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATcc                                                         <  2:706195/93‑1 (MQ=255)

                                 cGAAGAAGAAAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCa                                                        <  1:1229609/93‑1 (MQ=255)

                                  gaagaagaaAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCAt                                                       >  1:2748350/1‑93 (MQ=255)

                                   aagaagaaAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATg                                                      <  1:3673506/93‑1 (MQ=255)

                                   aagaagaaAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATg                                                      <  1:1322317/93‑1 (MQ=255)

                                    agaagaaAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATga                                                     >  2:4522108/1‑93 (MQ=255)

                                    agaagaaAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATga                                                     >  1:853624/1‑93 (MQ=255)

                                     gaagaaAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATgag                                                    >  1:639739/1‑93 (MQ=255)

                                     gaagaaAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATgag                                                    >  1:3323023/1‑93 (MQ=255)

                                     gaagaaAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATgag                                                    >  1:4132248/1‑93 (MQ=255)

                                       agaaAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACAAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGaa                                                  >  2:2174606/1‑93 (MQ=255)

                                       agaaAAGGCACTGGCAACGCATTATGGGTTTGCCTGTGGAGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGaa                                                  >  2:589949/1‑93 (MQ=255)

                                          aaaGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGTTCACTGGAAAACCTAAAAGGCACAATCCATGAGaaaaa                                               <  2:1829988/93‑1 (MQ=255)

                                          aaaGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGaaaaa                                               <  2:1193602/93‑1 (MQ=255)

                                          aaaGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGaaaaa                                               <  2:560333/93‑1 (MQ=255)

                                            aGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATa                                             >  2:3848965/1‑93 (MQ=255)

                                             ggCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATaa                                            >  1:3013285/1‑93 (MQ=255)

                                               cACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATaaaa                                          <  1:2615273/93‑1 (MQ=255)

                                               cACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATaaaa                                          <  2:4010618/93‑1 (MQ=255)

                                                aCTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATaaaaa                                         <  1:1852558/93‑1 (MQ=255)

                                                aCTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATaaaaa                                         >  1:4412662/1‑93 (MQ=255)

                                                 cTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAAc                                        >  1:1066212/1‑93 (MQ=255)

                                                  tGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACa                                       <  1:753842/93‑1 (MQ=255)

                                                   ggCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACAt                                      <  1:3792240/93‑1 (MQ=255)

                                                    gCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACATg                                     >  1:443234/1‑93 (MQ=255)

                                                    gCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACATg                                     >  1:1569771/1‑93 (MQ=255)

                                                     cAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACATgg                                    <  1:2072146/93‑1 (MQ=255)

                                                     cAACGCATTATGGTTTTGCCTGTGGTATTCAGCACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACATgg                                    <  1:4683926/93‑1 (MQ=255)

                                                      aaCGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACATGGa                                   >  2:1103210/1‑93 (MQ=255)

                                                        cGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACATGGAtt                                 <  2:2100104/93‑1 (MQ=255)

                                                          cATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACATGGATTAc                               <  2:2722390/93‑1 (MQ=255)

                                                          cATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACATGGATTAc                               >  2:3264296/1‑93 (MQ=255)

                                                           aTTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACATGGATTACt                              >  1:386396/1‑93 (MQ=255)

                                                           aTTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACATGGATTACt                              >  2:2998203/1‑93 (MQ=255)

                                                           aTTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACATGGATTACt                              <  1:3556826/93‑1 (MQ=255)

                                                           aTTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACATGGATTACt                              >  2:3435699/1‑93 (MQ=255)

                                                            ttATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACATGGATTACTc                             >  1:3211875/1‑93 (MQ=255)

                                                            ttATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACATGGATTACTc                             >  2:1429372/1‑93 (MQ=255)

                                                              aTGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACATGGATTACTCaa                           >  1:188167/1‑93 (MQ=255)

                                                               tGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACATGGATTACTCaaa                          >  2:1146337/1‑93 (MQ=255)

                                                               tGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACATGGATTACTCaaa                          <  2:1009427/93‑1 (MQ=255)

                                                                  ttttGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACATGGATTACTCAAAGGt                       <  1:1972935/93‑1 (MQ=255)

                                                                   tttGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACATGGATTACTCAAAGGTg                      >  1:2213109/1‑93 (MQ=255)

                                                                    ttGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACATGGATTACTCAAAGGTGa                     <  1:4185420/93‑1 (MQ=255)

                                                                     tGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACATGGATTACTCAAAGGTGAt                    <  1:113001/93‑1 (MQ=255)

                                                                       ccTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACATGGATTACTCAAAGGTGATgg                  <  2:1474221/93‑1 (MQ=255)

                                                                        cTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACATGGATTACTCAAAGGTGATGGc                 >  1:93381/1‑93 (MQ=255)

                                                                        cTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACATGGATTACTCAAAGGTGATGGc                 <  1:452089/93‑1 (MQ=255)

                                                                          gtggtgTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACATGGATTACTCAAAGGTGATGGCGt               <  2:2840242/93‑1 (MQ=255)

                                                                          gtggtgTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACATGGATTACTCAAAGGTGATGGCGt               >  2:4667828/1‑93 (MQ=255)

                                                                          gtggtgTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACATGGATTACTCAAAGGTGATGGCGt               >  2:1305990/1‑93 (MQ=255)

                                                                          gtggtgTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACATGGATTACTCAAAGGTGATGGCGt               <  1:1740623/93‑1 (MQ=255)

                                                                           tggtgTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACATGGATTACTCAAAGGTGATGGCGtt              >  2:2220368/1‑93 (MQ=255)

                                                                               gtTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACATGGATTACTCAAAGGTGATGGCGTTCTAc          >  1:228742/1‑93 (MQ=255)

                                                                                 tCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCAGAATCCATGAGAAAAATAAAAACATGCATTACTCAAAGGTGATCGCGTTCTAcca        <  2:4489859/93‑1 (MQ=255)

                                                                                 tCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACATGGATTACTCAAAGGTGATGGCGTTCTAcca        >  1:2867185/1‑93 (MQ=255)

                                                                                 tCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACATGGATTACTCAAAGGTGATGGCGTTCTAcca        <  1:4319076/93‑1 (MQ=255)

                                                                                     cacTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACATGGATTACTCAAAGGTGATGGCGTTCTAccatcca    <  1:2653731/93‑1 (MQ=255)

                                                                                       cTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACATGGATTACTCAAAGGTGATGGCGTTCTACCATCCAtt  >  1:4331749/1‑93 (MQ=255)

CGGCACAATATCGCTTTACTACTACTGGAATAACGAAGAAGAAAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGTACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACATGGATTACTCAAAGGTGATGGCGTTCTACCATCCATT  >  NC_000913/3873403‑3873582

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 25 ≤` `ATCG/ATCG` `< 31 ≤` `ATCG/ATCG` `< 35 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

TACCGGCACAATATCGCTTTACTACTACTGGAATAACGAAGAAGAAAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGTACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACATGGATTACTCAAAGGTGATGGCGTTCTACCATCCATTTAAA  >  NC_000913/3873400‑3873586

TACCGGCACAATATCGCTTTACTACTACTGGAATAACGAAGAAGAAAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGC                                                                                               >  SRR4302535.684913/1‑94 (MQ=60)

TACCGGCACAATATCGCTTTACTACTACTGGAATAACGAAGAAGAAAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGC                                                                                               <  SRR4302535.4535747/94‑1 (MQ=60)

 TCCGGCACAATATCGCTTTACTACTACTGGAATAACGAAGAAGAAAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCA                                                                                              <  SRR4302535.3662161/94‑1 (MQ=60)

 ACCGGCACAATATCGCTTTACTACTACTGGAATAACGAAGAAGAAAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCA                                                                                              <  SRR4302535.3143066/94‑1 (MQ=60)

   CGGCACAATATCGCTTTACTACTACTGGAATAACGAAGAAGAAAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACC                                                                                            <  SRR4302535.459085/94‑1 (MQ=60)

    GGCACAATATCGCTTTACTACTACTGGAATAACGAAGAAGAAAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCA                                                                                           <  SRR4302535.4029232/94‑1 (MQ=60)

     GCACAATATCGCTTTACTACTACTGGAATAACGAAGAAGAAAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAG                                                                                          <  SRR4302535.3632863/94‑1 (MQ=60)

      CACAATATCGCTTTACTACTACTGGAATAACGAAGAAGAAAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGG                                                                                         >  SRR4302535.1455015/1‑94 (MQ=60)

        CAATATCGCTTTACTACTACTGGAATAACGAAGAAGAAAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTC                                                                                       >  SRR4302535.2583068/1‑94 (MQ=60)

         AATATCGCTTTACTACTACTGGAATAACGAAGAAGAAAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCA                                                                                      >  SRR4302535.3108980/1‑94 (MQ=60)

         AATATCGCTTTACTACTACTGGAATAACGAAGAAGAAAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCA                                                                                      >  SRR4302535.3381608/1‑94 (MQ=60)

           TATCGCTTTACTACTACTGGAATAACGAAGAAGAAAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACT                                                                                    <  SRR4302535.1084062/94‑1 (MQ=60)

           TATCGCTTTACTACTACTGGAATAACGAAGAAGAAAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACT                                                                                    <  SRR4302535.4350530/94‑1 (MQ=60)

           TATCGCTTTACTACTACTGGAATAACGAAGAAGAAAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACT                                                                                    <  SRR4302535.2616944/94‑1 (MQ=60)

            ATCGCTTTACTACTACTGGAATAACGAAGAAGAAAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTG                                                                                   <  SRR4302535.2712191/94‑1 (MQ=60)

            ATCGCTTTACTACTACTGGAATAACGAAGAAGAAAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTG                                                                                   >  SRR4302535.2659892/1‑94 (MQ=60)

            ATCGCTTTACTACTACTGGAATAACGAAGAAGAAAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTG                                                                                   >  SRR4302535.1886801/1‑94 (MQ=60)

            ATCGCTTTACTACTACTGGAATAACGAAGAAGAAAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTG                                                                                   <  SRR4302535.43893/94‑1 (MQ=60)

            ATCGCTTTACTACTACTGGAATAACGAAGAAGAAAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTG                                                                                   >  SRR4302535.1206511/1‑94 (MQ=60)

             TCGCTTTACTACTACTGGAATAACGAAGAAGAAAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGG                                                                                  <  SRR4302535.2146583/94‑1 (MQ=60)

             TCGCTTTACTACTACTGGAATAACGAAGAAGAAAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGG                                                                                  <  SRR4302535.1647645/94‑1 (MQ=60)

              CGCTTTACTACTACTGGAATAACGAAGAAGAAAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGA                                                                                 <  SRR4302535.4235858/94‑1 (MQ=60)

              CGCTTTACTACTACTGGAATAACGAAGAAGAAAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGA                                                                                 <  SRR4302535.2580857/94‑1 (MQ=60)

              CGCTTTACTACTACTGGAATAACGAAGAAGAAAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGA                                                                                 >  SRR4302535.2189621/1‑94 (MQ=60)

              CGCTTTACTACTACTGGAATAACGAAGAAGAAAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGA                                                                                 >  SRR4302535.4020169/1‑94 (MQ=60)

              CGCTTTACTACTACTGGAATAACGAAGAAGAAAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGA                                                                                 <  SRR4302535.3957109/94‑1 (MQ=60)

               GCTTTACTACTACTGGAATAACGAAGAAGAAAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAA                                                                                >  SRR4302535.4170092/1‑94 (MQ=60)

               GCTTTACTACTACTGGAATAACGAAGAAGAAAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAA                                                                                >  SRR4302535.744352/1‑94 (MQ=60)

                  TTACTACTACTGGAATAACGAAGAAGAAAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAAC                                                                             <  SRR4302535.2379822/94‑1 (MQ=60)

                    ACTACTACTGGAATAACGAAGAAGAAAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCT                                                                           >  SRR4302535.2903137/1‑94 (MQ=60)

                       ACTACTGGAATAACGAAGAAGAAAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAA                                                                        >  SRR4302535.3663170/1‑94 (MQ=60)

                       ACTACTGGAATAACGAAGAAGAAAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAA                                                                        >  SRR4302535.1279762/1‑94 (MQ=60)

                        CTACTGGAATAACGAAGAAGAAAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAA                                                                       >  SRR4302535.4272905/1‑94 (MQ=60)

                        CTACTGGAATAACGAAGAAGAAAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAA                                                                       <  SRR4302535.4296718/94‑1 (MQ=60)

                        CTACTGGAATAACGAAGAAGAAAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAA                                                                       >  SRR4302535.4227385/1‑94 (MQ=60)

                         TACTGGAATAACGAAGAAGAAAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAG                                                                      <  SRR4302535.3784558/94‑1 (MQ=60)

                         TACTGGAATAACGAAGAAGAAAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAG                                                                      <  SRR4302535.2488652/94‑1 (MQ=60)

                         TACTGGAATAACGAAGAAGAAAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAG                                                                      <  SRR4302535.2703746/94‑1 (MQ=60)

                         TACTGGAATAACGAAGAAGAAAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAG                                                                      <  SRR4302535.950686/94‑1 (MQ=60)

                         TACTGGAATAACGAAGAAGAAAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAG                                                                      <  SRR4302535.3136294/94‑1 (MQ=60)

                         TACTGGAATAACGAAGAAGAAAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAG                                                                      <  SRR4302535.4318051/94‑1 (MQ=60)

                          ACTGGAATAACGAAGAAGAAAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCATTGGAAAACCTAAAAGG                                                                     <  SRR4302535.2962974/94‑1 (MQ=60)

                          ACTGGAATAACGAAGAAGAAAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGG                                                                     <  SRR4302535.4388390/94‑1 (MQ=60)

                          ACTGGAATAACGAAGAAGAAAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGG                                                                     <  SRR4302535.1909503/94‑1 (MQ=60)

                          ACTGGAATAACGAAGAAGAAAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGG                                                                     >  SRR4302535.1431546/1‑94 (MQ=60)

                           CTGGAATAACGAAGAAGAAAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGC                                                                    >  SRR4302535.1733085/1‑94 (MQ=60)

                           CTGGAATAACGAAGAAGAAAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGC                                                                    <  SRR4302535.2428153/94‑1 (MQ=60)

                           CTGGAATAACGAAGAAGAAAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGC                                                                    <  SRR4302535.1462174/94‑1 (MQ=60)

                            TGGAATAACGAAGAAGAAAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCA                                                                   >  SRR4302535.3460593/1‑94 (MQ=60)

                             GGAATAACGAAGAAGAAAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCAC                                                                  >  SRR4302535.4635240/1‑94 (MQ=60)

                              GAATAACGAAGAAGAAAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACA                                                                 <  SRR4302535.1572085/94‑1 (MQ=60)

                              GAATAACGAAGAAGAAAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACA                                                                 <  SRR4302535.1989049/94‑1 (MQ=60)

                               AATAACGAAGAAGAAAAGGCACTGGCAACGCATTATGGTTTTGTCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAA                                                                >  SRR4302535.1564204/1‑94 (MQ=60)

                               AATAACGAAGAAGAAAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAA                                                                >  SRR4302535.1468000/1‑94 (MQ=60)

                               AATAACGAAGAAGAAAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAA                                                                >  SRR4302535.4290894/1‑94 (MQ=60)

                                ATAACGAAGAAGAAAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAAT                                                               <  SRR4302535.1533978/94‑1 (MQ=60)

                                 TAACGAAGAAGAAAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATC                                                              <  SRR4302535.3162020/94‑1 (MQ=60)

                                 TAACGAAGAAGAAAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATC                                                              <  SRR4302535.2192695/94‑1 (MQ=60)

                                  AACGAAGAAGAAAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCC                                                             <  SRR4302535.2366135/94‑1 (MQ=60)

                                  AACGAAGAAGAAAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCC                                                             <  SRR4302535.4508695/94‑1 (MQ=60)

                                    CGAAGAAGAAAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCAT                                                           >  SRR4302535.2767942/1‑94 (MQ=60)

                                    CGAAGAAGAAAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCAT                                                           <  SRR4302535.1677558/94‑1 (MQ=60)

                                    CGAAGAAGAAAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCAT                                                           <  SRR4302535.1238395/94‑1 (MQ=60)

                                     GAAGAAGAAAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATG                                                          >  SRR4302535.1864933/1‑94 (MQ=60)

                                     GAAGAAGAAAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATG                                                          >  SRR4302535.562873/1‑94 (MQ=60)

                                      AAGAAGAAAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGA                                                         <  SRR4302535.3698942/94‑1 (MQ=60)

                                      AAGAAGAAAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGA                                                         >  SRR4302535.84151/1‑94 (MQ=60)

                                      AAGAAGAAAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGA                                                         <  SRR4302535.1331755/94‑1 (MQ=60)

                                      AAGAAGAAAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGA                                                         >  SRR4302535.859637/1‑94 (MQ=60)

                                       AGAAGAAAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAG                                                        >  SRR4302535.4160521/1‑94 (MQ=60)

                                       AGAAGAAAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAG                                                        >  SRR4302535.988728/1‑94 (MQ=60)

                                       AGAAGAAAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAG                                                        >  SRR4302535.4458920/1‑94 (MQ=60)

                                       AGAAGAAAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAG                                                        >  SRR4302535.644209/1‑94 (MQ=60)

                                       AGAAGAAAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAG                                                        >  SRR4302535.3346143/1‑94 (MQ=60)

                                         AAGAAAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAA                                                      <  SRR4302535.3831376/94‑1 (MQ=60)

                                          AGAAAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCTCAATCCATGAGAAA                                                     >  SRR4302535.2671128/1‑94 (MQ=60)

                                           GAAAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAA                                                    <  SRR4302535.3211565/94‑1 (MQ=60)

                                            AAAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAA                                                   <  SRR4302535.268831/94‑1 (MQ=60)

                                             AAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAAT                                                  <  SRR4302535.3242695/94‑1 (MQ=60)

                                               AGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAA                                                >  SRR4302535.1422593/1‑94 (MQ=60)

                                               AGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAA                                                >  SRR4302535.4597882/1‑94 (MQ=60)

                                               AGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAA                                                >  SRR4302535.3034400/1‑94 (MQ=60)

                                                  CACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAA                                             >  SRR4302535.4442862/1‑94 (MQ=60)

                                                  CACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAA                                             <  SRR4302535.2634029/94‑1 (MQ=60)

                                                   ACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAAC                                            >  SRR4302535.1073797/1‑94 (MQ=60)

                                                   ACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAAC                                            <  SRR4302535.1865903/94‑1 (MQ=60)

                                                   ACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAAC                                            <  SRR4302535.3910448/94‑1 (MQ=60)

                                                     TGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACAT                                          <  SRR4302535.3685953/94‑1 (MQ=60)

                                                     TGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACAT                                          <  SRR4302535.759147/94‑1 (MQ=60)

                                                     TGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACAT                                          <  SRR4302535.845611/94‑1 (MQ=60)

                                                      GGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACATG                                         <  SRR4302535.3818385/94‑1 (MQ=60)

                                                      GGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACATG                                         >  SRR4302535.446338/1‑94 (MQ=60)

                                                      GGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACATG                                         >  SRR4302535.1581103/1‑94 (MQ=60)

                                                       GCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACATGG                                        <  SRR4302535.2217000/94‑1 (MQ=60)

                                                       GCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACATGG                                        <  SRR4302535.3395426/94‑1 (MQ=60)

                                                        CAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACATGGA                                       >  SRR4302535.2739436/1‑94 (MQ=60)

                                                        CAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACATGGA                                       <  SRR4302535.2087078/94‑1 (MQ=60)

                                                        CAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACATGGA                                       <  SRR4302535.2230951/94‑1 (MQ=60)

                                                        CAACGCATTATGGTTTTGCCTGTGGTATTCAGCACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACATGGA                                       <  SRR4302535.4715605/94‑1 (MQ=60)

                                                         AACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACATGGAT                                      <  SRR4302535.3739028/94‑1 (MQ=60)

                                                          ACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACATGGATT                                     <  SRR4302535.1775499/94‑1 (MQ=60)

                                                          ACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACATGGATT                                     <  SRR4302535.4070801/94‑1 (MQ=60)

                                                           CGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACATGGATTA                                    >  SRR4302535.3127864/1‑94 (MQ=60)

                                                            GCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACATGGATTAC                                   <  SRR4302535.1616164/94‑1 (MQ=60)

                                                             CATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACATGGATTACT                                  <  SRR4302535.4583532/94‑1 (MQ=60)

                                                             CATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACATGGATTACT                                  >  SRR4302535.1945429/1‑94 (MQ=60)

                                                             CATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACATGGATTACT                                  <  SRR4302535.1579397/94‑1 (MQ=60)

                                                             CATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACATGGATTACT                                  <  SRR4302535.4054598/94‑1 (MQ=60)

                                                             CATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACATGGATTACT                                  >  SRR4302535.389082/1‑94 (MQ=60)

                                                             CATTATGGTGTTGCGTGTGGTGTCCAACACTGCACCAGGTCACTGGAAATCCTAAAAGGCACAAGCCATGAGAAAAATAAAAACATGGATTACT                                  <  SRR4302535.3536/94‑1 (MQ=60)

                                                              ATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACATGGATTACTC                                 <  SRR4302535.3581497/94‑1 (MQ=60)

                                                              ATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACATGGATTACTC                                 >  SRR4302535.307735/1‑94 (MQ=60)

                                                              ATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACATGGATTACTC                                 >  SRR4302535.3234119/1‑94 (MQ=60)

                                                                TATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACATGGATTACTCAA                               >  SRR4302535.918236/1‑94 (MQ=60)

                                                                TATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACATGGATTACTCAA                               >  SRR4302535.189470/1‑94 (MQ=60)

                                                                  TGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAACAGGCACAATCCATGAGAAAAATAAAAACATGGATTACTCAAAG                             <  SRR4302535.2524169/94‑1 (MQ=60)

                                                                  TGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACATGGATTACTCAAAG                             <  SRR4302535.4556042/94‑1 (MQ=60)

                                                                    GTTTTGCCTGTGGTGTTCAACGCTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACATGGATTACTCAAAGGT                           <  SRR4302535.3942526/94‑1 (MQ=60)

                                                                    GTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACATGGATTACTCAAAGGT                           >  SRR4302535.2869519/1‑94 (MQ=60)

                                                                     TTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACATGGATTACTCAAAGGTG                          <  SRR4302535.1987144/94‑1 (MQ=60)

                                                                     TTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACATGGATTACTCAAAGGTG                          <  SRR4302535.4327251/94‑1 (MQ=60)

                                                                     TTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACATGGATTACTCAAAGGTG                          >  SRR4302535.2228868/1‑94 (MQ=60)

                                                                     TTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACATGGATTACTCAAAGGTG                          <  SRR4302535.3488925/94‑1 (MQ=60)

                                                                      TTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACATGGATTACTCAAAGGTGA                         <  SRR4302535.447974/94‑1 (MQ=60)

                                                                       TTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACATGGATTACTCAAAGGTGAT                        <  SRR4302535.4214051/94‑1 (MQ=60)

                                                                       TTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACATGGATTACTCAAAGGTGAT                        >  SRR4302535.4668200/1‑94 (MQ=60)

                                                                        TGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACATGGATTACTCAAAGGTGATG                       <  SRR4302535.113793/94‑1 (MQ=60)

                                                                        TGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACATGGATTACTCAAAGGTGATG                       <  SRR4302535.597762/94‑1 (MQ=60)

                                                                         GCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACATGGATTACTCAAAGGTGATGG                      <  SRR4302535.1467600/94‑1 (MQ=60)

                                                                          CCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACATGGATTACTCAAAGGTGATGGC                     >  SRR4302535.94044/1‑94 (MQ=60)

                                                                           CTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACATGGATTACTCAAAGGTGATGGCG                    <  SRR4302535.455255/94‑1 (MQ=60)

                                                                             GTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACATGGATTACTCAAAGGTGATGGCGTT                  <  SRR4302535.1753202/94‑1 (MQ=60)

                                                                              TGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACATGGATTACTCAAAGGTGATGGCGTTC                 >  SRR4302535.4712347/1‑94 (MQ=60)

                                                                                 TGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACATGGATTACTCAAAGGTGATGGCGTTCTAC              >  SRR4302535.230315/1‑94 (MQ=60)

                                                                                   TTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACATGGATTACTCAAAGGTGATGGCGTTCTACCA            >  SRR4302535.2887495/1‑94 (MQ=60)

                                                                                   TTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACATGGATTACTCAAAGGTGATGGCGTTCTACCA            >  SRR4302535.2393775/1‑94 (MQ=60)

                                                                                   TTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACATGGATTACTCAAAGGTGATGGCGTTCTACCA            >  SRR4302535.2020542/1‑94 (MQ=60)

                                                                                    TCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACATGGATTACTCAAAGGTGATGGCGTTCTACCAT           <  SRR4302535.4348623/94‑1 (MQ=60)

                                                                                    TCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACATGGATTACTCAAAGGTGATGGCGTTCTACCAT           <  SRR4302535.3592155/94‑1 (MQ=60)

                                                                                    TCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACATGGATTACTCAAAGGTGATGGCGTTCTACCAT           >  SRR4302535.2341245/1‑94 (MQ=60)

                                                                                    TCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATAAGAAAAATAAAAACATGGATTACTCAAAGGTGATGGCGTTCTACCAT           >  SRR4302535.3064102/1‑94 (MQ=60)

                                                                                      AACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACATGGATTACTCAAAGGTGATGGCGTTCTACCATCC         >  SRR4302535.4208966/1‑94 (MQ=60)

                                                                                      AACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACATGGATTACTCAAAGGTGATGGCGTTCTACCATCC         >  SRR4302535.1223856/1‑94 (MQ=60)

                                                                                        CACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACATGGATTACTCAAAGGTGATGGCGTTCTACCATCCAT       <  SRR4302535.2672743/94‑1 (MQ=60)

                                                                                         ACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACATGGATTACTCAAAGGTGATGGCGTTCTACCATCCATT      >  SRR4302535.4361373/1‑94 (MQ=60)

                                                                                          CTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACATGGATTACTCAAAGGTGATGGCGTTCTACCATCCATTT     >  SRR4302535.4023999/1‑94 (MQ=60)

                                                                                           TGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACATGGATTACTCAAAGGTGATGGCGTTCTACCATCCATTTA    <  SRR4302535.4563996/94‑1 (MQ=60)

                                                                                             CACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACATGGATTACTCAAAGGTGATGGCGTTCTACCATCCATTTAAA  >  SRR4302535.4198166/1‑94 (MQ=60)

                                                                                             CACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACATGGATTACTCAAAGGTGATGGCGTTCTACCATCCATTTAAA  >  SRR4302535.4636980/1‑94 (MQ=60)

                                                                                             CACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACATGGATTACTCAAAGGTGATGGCGTTCTACCATCCATTTAAA  >  SRR4302535.492914/1‑94 (MQ=60)

TACCGGCACAATATCGCTTTACTACTACTGGAATAACGAAGAAGAAAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGTACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACATGGATTACTCAAAGGTGATGGCGTTCTACCATCCATTTAAA  >  NC_000913/3873400‑3873586

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 25 ≤` `ATCG/ATCG` `< 31 ≤` `ATCG/ATCG` `< 35 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`