Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I1 R1 1696 279.3 15874187 97.8% 15524954 93.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,914,878 T→C E42E (GAA→GAG atpD ← membrane‑bound ATP synthase, F1 sector, beta‑subunit

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,914,8780TC99.5% 1349.8 / ‑3.8 432E42E (GAA→GAGatpDmembrane‑bound ATP synthase, F1 sector, beta‑subunit
Reads supporting (aligned to +/- strand):  ref base T (2/0);  new base C (219/211);  total (221/211)
Fisher's exact test for biased strand distribution p-value = 4.99e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 6.52e-01

Only 100 of 443 total aligned reads displayed.

GAGGTCTTTTACATCCAGACCGCGACGCAGACCGTCGGAGGAACCCATTGCGATGGTACGTACGATACCGCCGCCGAGCTGCTGCTGAACTTCCAGCACCAGACGCTCATTACCATTTTGCACCTCAAGAGCATCGTACACGCGCGGTACGGCATCCTGAGGGAATTCGACGTCAACTAC  >  NC_000913/3914788‑3914967
                                                                                          |                                                                                         
 aGGTCTTTTACATCCAGACCGCGACGCAGACCGTCGGAGGAACCCATTGCGATGGTACGTACGATACCGCCGCCGAGCTGCTGCTGAACCTcc                                                                                        >  1:5301518/1‑93 (MQ=255)
 aGGTCTTTTACATCCAGACCGCGACGCAGACCGTCGGAGGAACCCATTGCGATGGTACGTACGATACCGCCGCCGAGCTGCTGCTGAACCTcc                                                                                        <  1:1867248/93‑1 (MQ=255)
  ggTCTTTTACATCCAGACCGCGACGCAGACCGTCGGAGGAACCCATTGCGATGGTACGTACGATACCGCCGCCGAGCTGCTGCTGAACCTCCa                                                                                       >  1:4580168/1‑93 (MQ=255)
  ggTCTTTTACATCCAGACCGCGACGCAGACCGTCGGAGGAACCCATTGCGATGGTACGTACGATACCGCCGCCGAGCTGCTGCTGAACCTCCa                                                                                       >  2:3829332/1‑93 (MQ=255)
  ggTCTTTTACATCCAGACCGCGACGCAGACCGTCGGAGGAACCCATTGCGATGGTACGTACGATACCGCCGCCGAGCTGCTGCTGAACCTCCa                                                                                       >  1:7055477/1‑93 (MQ=255)
  ggTCTTTTACATCCAGACCGCGACGCAGACCGTCGGAGGAACCCATTGCGATGGTACGTACGATACCGCCGCCGAGCTGCTGCTGAACCTCCa                                                                                       <  2:1545934/93‑1 (MQ=255)
  ggTCTTTTACATCCAGACCGCGACGCAGACCGTCGGAGGAACCCATTGCGATGGTACGTACGATACCGCCGCCGAGCTGCTGCTGAACCTCCa                                                                                       <  2:2293868/93‑1 (MQ=255)
   gTCTTTTACATCCAGACCGCGACGCAGACCGTCGGAGGAACCCATTGCGATGGTACGTACGATACCGCCGCCGAGCTGCTGCTGAACCTCCAg                                                                                      >  2:6095674/1‑93 (MQ=255)
   gTCTTTTACATCCAGACCGCGACGCAGACCGTCGGAGGAACCCATTGCGATGGTACGTACGATACCGCCGCCGAGCTGCTGCTGAACCTCCAg                                                                                      <  1:5517365/93‑1 (MQ=255)
   gTCTTTTACATCCAGACCGCGACGCAGACCGTCGGAGGAAACCATTGCGATGGTACGTACGATACCGCCGCCGAGCTGCTGCTGAACGTACAg                                                                                      >  2:7122064/1‑93 (MQ=255)
    tCTTTTACATCCAGACCGCGAAGCAGACCGTCGGAGGAACCCATTGCGATGGTACGTACGATACCGCCGCCGAGCTGCTGCTGAACCTCCAGc                                                                                     >  1:5399767/1‑93 (MQ=255)
     cTTTTACATCCAGACCGCGACGCAGACCGTCGGAGGAACCCATTGCGATGGTACGTACGATACCGCCGCCGAGCTGCTGCTGAACCTCCAGCa                                                                                    >  1:3178180/1‑93 (MQ=255)
      ttttACATCCAGACCGCGACGCAGACCGTCGGAGGAACCCATTGCGATGGTACGTACGATACCGCCGCCGAGCTGCTGCTGAACCTCCAGCAc                                                                                   >  1:2349012/1‑93 (MQ=255)
      ttttACATCCAGACCGCGACGCAGACCGTCGGAGGAACCCATTGCGATGGTACGTACGATACCGCCGCCGAGCTGCTGCTGAACCTCCAGCAc                                                                                   >  1:5670627/1‑93 (MQ=255)
      ttttACATCCAGACCGCGACGCAGACCGTCGGAGGAACCCATTGCGATGGTACGTACGATACCGCCGCCGAGCTGCTGCTGAACCTCCAGCAc                                                                                   >  1:34429/1‑93 (MQ=255)
        ttACATCCAGACCGCGACGCAGACCGTCGGAGGAACCCATTGCGATGGTACGTACGATACCGCCGCCGAGCTGCTGCTGAACCTCCAGCACCa                                                                                 <  1:7785763/93‑1 (MQ=255)
        ttACATCCAGACCGCGACGCAGACCGTCGGAGGAACCCATTGCGATGGTACGTACGATACCGCCGCCGAGCTGCTGCTGAACCTCCAGCACCa                                                                                 >  1:3256598/1‑93 (MQ=255)
        ttACATCCAGACCGCGACGCAGACCGTCGGAGGAACCCATTGCGATGGTACGTACGATACCGCCGCCGAGCTGCTGCTGAACCTCCAGCACCa                                                                                 <  2:5543611/93‑1 (MQ=255)
        ttACATCCAGACCGCGACGCAGACCGTCGGAGGAACCCATTGCGATGGTACGTACGATACCGCCGCCGAGCTGCTGCTGAACCTCCAGCACCa                                                                                 >  2:7063568/1‑93 (MQ=255)
         tACATCCAGACCGCGACGCAGACCGTCGGAGGAACCCATTGCGATGGTACGTACGATACCGCCGCCGAGCTGCTGCTGAACCTCCAGCACCAg                                                                                >  2:3704721/1‑93 (MQ=255)
         tACATCCAGACCGCGACGCAGACCGTCGGAGGAACCCATTGCGATGGTACGTACGATACCGCCGCCGAGCTGCTGCTGAACCTCCAGCACCAg                                                                                >  1:5565514/1‑93 (MQ=255)
         tACATCCAGACCGCGACGCAGACCGTCGGAGGAACCCATTGCGATGGTACGTACGATACCGCCGCCGAGCTGCTGCTGAACCTCCAGCACCAg                                                                                >  2:844765/1‑93 (MQ=255)
           cATCCAGACCGCGACGCAGACCGTCGGAGGAACCCATTGCGATGGTACGTACGATACCGCCGCCGAGCTGCTGCTGAACCTCCAGCACCAGAc                                                                              <  1:6735570/93‑1 (MQ=255)
            aTCCAGACCGCGACGCAGACCGTCGGAGGAACCCATTGCGATGGTACGTACGATACCGCCGCCGAGCTGCTGCTGAACCTCCAGCACCAGACg                                                                             >  1:2973906/1‑93 (MQ=255)
             tCCAGACCGCGACGCAGACCGTCGGAGGAACCCATTGCGATGGTACGTACGATACCGCCGCCGAGCTGCTGCTGAACCTCCAGCACCAGACGc                                                                            >  2:6272032/1‑93 (MQ=255)
              ccAGACCGCGACGCAGACCGTCGGAGGAACCCATTGCGATGGTACGTACGATACCGCCGCCGAGCTGCTGCTGAACCTCCAGCACCAGACGCt                                                                           >  1:3117987/1‑93 (MQ=255)
               cAGACCGCGACGCAGACCGTCGGAGGAACCCATTGCGATGGTACGTACGATACCGCCGCCGAGCTGCTGCTGAACCTCCAGCACTAGACGCTc                                                                          >  1:3729517/1‑93 (MQ=255)
                cgACCGCGACCCAGACCGTCGGAGGATCCCATTGCGATGGTACGTACGATACCGCCGCCGAGCTGCTGCTGAACCTCCAGCACCAGACGCTCa                                                                         <  2:2003307/92‑1 (MQ=255)
                aGACCGCGACGCAGACCGTCGGAGGAACCCATTGCGATGGTACGTACGATACCGCCGCCGAGCTGCTGCTGAACCTCCAGCACCAGACGCTCa                                                                         <  2:4422666/93‑1 (MQ=255)
                 gACCGCGACGCAGACCGTCGGAGGAACCCATTGCGATGGTACGTACGATACCGCCGCCGAGCTGCTGCTGAACCTCCAGCACCAGACGCTCAt                                                                        <  1:983532/93‑1 (MQ=255)
                 gACCGCGACGCAGACCGTCGGAGGAACCCATTGCGATGGTACGTACGATACCGCCGCCGAGCTGCTGCTGAACCTCCAGCACCAGACGCTCAt                                                                        <  2:7623615/93‑1 (MQ=255)
                    cgcgACGCAGACCGTCGGAGGAACCCATTGCGATGGTACGTACGATACCGCCGCCGAGCTGCTGCTGAACCTCCAGCACCAGACGCTCATTAc                                                                     <  2:7213285/93‑1 (MQ=255)
                     gcgcCGCAGACCGTCGAAGGATCCCATTGCGATGGTACGTACGATACCGCCGCCGAGCTGCTGCTGAACCTCCAGCACCAGACGCTCATTAcc                                                                    <  1:3925941/93‑1 (MQ=255)
                     gcgACGCAGACCGTCGGAGGAACCCATTGCGATGGTACGTACGATACCGCCGCCGAGCTGCTGCTGAACCTCCAGCACCAGACGCTCATTAcc                                                                    >  2:353364/1‑93 (MQ=255)
                        aCGCAGACCGTCGGAGGAACCCATTGCGATGGTACGTACGATACCGCCGCCGAGCTGCTGCTGAACCTCCAGCACCAGACGCTCATTACCAtt                                                                 >  1:4028365/1‑93 (MQ=255)
                          gCAGACCGTCGGAGGAACCCATTGCGATGGTACGTACGATACCGCCGCCGAGCTGCTGCTGAACCTCCAGCACCAGACGCTCATTACCAtttt                                                               <  2:2441659/93‑1 (MQ=255)
                          gCAGACCGTCGGAGGAACCCATTGCGATGGTACGTACGATACCGCCGCCGAGCTGCTGCTGAACCTCCAGCACCAGACGCTCATTACCAtttt                                                               >  1:1750203/1‑93 (MQ=255)
                             gACCGTCGGAGGAACCCATTGCGATGGTACGTACGATACCGCCGCCGAGCTGCTGCTGAACCTCCAGCACCAGACGCTCATTACCATTTTGCa                                                            >  2:3313929/1‑93 (MQ=255)
                             gACCGTCGGAGGAACCCATTGCGATGGTACGTACGATACCGCCGCCGAGCTGCTGCTGAACCTCCAGCACCAGACGCTCATTACCATTTTGCa                                                            <  1:7156156/93‑1 (MQ=255)
                                cGTCGGAGGAACCCATTGCGATGGTACGTACGATACCGCCGCCGAGCTGCTGCTGAACCTCCAGCACCAGACGCTCATTACCATTTTGCACCt                                                         >  1:5939854/1‑93 (MQ=255)
                                 gTCGGAGGAACCCATTGCGATGGTACGTACGATACCGCCGCCGAGCTGCTGCTGAACCTCCAGCACCAGACGCTCATTACCATTTTGCACCta                                                        >  1:6284800/1‑92 (MQ=255)
                                  tCGGAGGAACCCATTGCGATGGTACGTACGATACCGCCGCCGAGCTGCTGCTGAACCTCCAGCACCAGACGCTCATTACCATTTTGCACCTCa                                                       >  1:1010790/1‑93 (MQ=255)
                                   cGGAGGAACCCATTGCGATGGTACGTACGATACCGCCGCCGAGCTGCTGCTGAACCTCCAGCACCAGACGCTCATTACCATTTTGCACCTCaa                                                      <  1:3684665/93‑1 (MQ=255)
                                    ggaggaACCCATTGCGATGGTACGTACGATACCGCCGCCGAGCTGCTGCTGAACCTCCAGCACCAGACGCTCATTACCATTTTGCACCTCAag                                                     >  2:5063786/1‑93 (MQ=255)
                                    ggaggaACCCATTGCGATGGTACGTACGATACCGCCGCCGAGCTGCTGCTGAACCTCCAGCACCAGACGCTCATTACCATTTTGCACCTCAag                                                     <  2:1308419/93‑1 (MQ=255)
                                     gaggaACCCATTGCGATGGTACGTACGATCCCGCCGCCGAGCTGCTGCTGAACCTCCAGCACCAGACGCTCATTACCATTTTGCACCTCAaga                                                    <  2:3944775/93‑1 (MQ=255)
                                     gaggaACCCATTGCGATGGTACGTACGATACCGCCGCCGAGCTGCTGCTGAACCTCCAGCACCAGACGCTCATTACCATTTTGCACCTCAaga                                                    >  1:4977299/1‑93 (MQ=255)
                                     gaggaACCCATTGCGATGGTACGTACGATACCGCCGCCGAGCTGCTGCTGAACCTCCAGCACCAGACGCTCATTACCATTTTGCACCTCAaga                                                    <  2:7463115/93‑1 (MQ=255)
                                      aggaACCCATTGCGATGGTACGTACGATACCGCCGCCGAGCTGCTGCTGAACCTCCAGCACCAGACGCTCATTACCATTTTGCACCTCAagag                                                   >  1:6778880/1‑93 (MQ=255)
                                      aggaACCCATTGCGATGGTACGTACGATACCGCCGCCGAGCTGCTGCTGAACCTCCAGCACCAGACGCTCATTACCATTTTGCACCTCAagag                                                   >  1:3983521/1‑93 (MQ=255)
                                       ggaACCCATTGCGATGGTACGTACGATACCGCCGCCGAGCTGCTGCTGAACCTCCAGCACCAGACGCTCATTACCATTTTGCACCTCAAGAGc                                                  <  2:1850895/93‑1 (MQ=255)
                                       ggaACCCATTGCGATGGTACGTACGATACCGCCGCCGAGCTGCTGCTGAACCTCCAGCACCAGACGCTCATTACCATTTTGCACCTCAAGAGc                                                  <  2:7648212/93‑1 (MQ=255)
                                        gaACCCATTGCGATGGTACGTACGATACCGCCGCCGAGCTGCTGCTGAACCTCCAGCACCAGACGCTCATTACCATTTTGCACCTCAAGAGCa                                                 <  1:7471170/93‑1 (MQ=255)
                                          aCCCATTGCGATGGTACGTACGATACCGCCGCCGAGCTGCTGCTGAACCTCCAGCACCAGACGCTCATTACCATTTTGCACCTCAAGAGCATc                                               <  1:7615346/93‑1 (MQ=255)
                                          aCCCATTGCGATGGTACGTACGATACCGCCGCCGAGCTGCTGCTGAACCTCCAGCACCAGACGCTCATTACCATTTTGCACCTCAAGAGCATc                                               >  2:2873535/1‑93 (MQ=255)
                                           cccATTGCGATGGTACGTACGATACCGCCGCCGAGCTGCTGCTGAACCTCCAGCACCAGACGCTCATTACCATTTTGCACCTCAAGAGCATCg                                              >  2:6433023/1‑93 (MQ=255)
                                           cccATTGCGATGGTACGTACGATACCGCCGCCGAGCTGCTGCTGAACCTCCAGCACCAGACGCTCATTACCATTTTGCACCTCAAGAGCATCg                                              >  2:2231107/1‑93 (MQ=255)
                                            ccATTGCGATGGTACGTACGATACCGCCGCCGAGCTGCTGCTGAACCTCCAGCACCAGACGCTCATTACCATTTTGCACCTCAAGAGCATCGt                                             >  1:6165013/1‑93 (MQ=255)
                                            ccATTGCGATGGTACGTACGATACCGCCGCCGAGCTGCTGCTGAACCTCCAGCACCAGACGCTCATTACCATTTTGCACCTCAAGAGCATCGt                                             >  2:6714476/1‑93 (MQ=255)
                                              aTTGCGATGGTACGTACGATACCGCCGCCGAGCTGCTGCTGAACCTCCAGCACCAGACGCTCATTACCATTTTGCACCTCAAGAGAATCGTac                                           <  1:4318090/93‑1 (MQ=255)
                                               ttGCGATGGTACGTACGATACCGCCGCCGAGCTGCTGCTGAACCTCCAGCACCAGACGCTCATTACCATTTTGCACCTCAAGAGCATCGTaca                                          <  1:7293158/93‑1 (MQ=255)
                                                   gATGGTACGTACGATACCGCCGCCGAGCTGCTGCTGAACCTCCAGCACCAGACGCTCATTACCATTTTGCACCTCAAGAGCATCGTACAcgcg                                      <  1:4842144/93‑1 (MQ=255)
                                                   gATGGTACGTACGATACCGCCGCCGAGCTGCTGCTGAACCTCCAGCACCAGACGCTCATTACCATTTTGCACCTCAAGACCATCGTACAggcg                                      >  1:6494279/1‑93 (MQ=255)
                                                       gtacgtacGATACCGCCGCCGAGCTGCTGCTGAACCTCCAGCACCAGACGCTCATTACCATTTTGCACCTCAAGAGCATCGTACACGCGCGGt                                  <  2:432219/93‑1 (MQ=255)
                                                        tacgtacgATACCGCCGCCGAGCTGCTGCTGAACCTCCAGCACCAGACGCTCATTACCATTTTGCACCTCAAGAGCATCGTACACGCGCGGTa                                 <  1:2549953/93‑1 (MQ=255)
                                                         acgtacgATACCGCCGCCGAGCTGCTGCTGAACCTCCAGCACCAGACGCTCATTACCATTTTGCACCTCAAGAGCATCGTACACGCGCGGTAc                                <  1:5054309/93‑1 (MQ=255)
                                                         acgtacgATACCGCCGCCGAGCTGCTGCTGAACCTCCAGCACCAGACGCTCATTACCATTTTGCACCTCAAGAGCATCGTACACGCGCGGTAc                                <  1:3356839/93‑1 (MQ=255)
                                                             acgATACCGCCGCCGAGCTGCTGCTGAACCTCCAGCACCAGACGCTCATTACCATTTTGCACCTCAAGAGCATCGTACACGCGCGGTACGGCa                            <  2:545102/93‑1 (MQ=255)
                                                             acaaTACCCCCGCCGAGCCTCTGCTGAACCTCCAGCACTAGACGCTCATTACCATTTTGCCCCTCAAGAGCATCGTACACGCGCGGTACGGCa                            <  2:6784328/90‑1 (MQ=255)
                                                               gATACCGCCGCCGAGCTGCTGCTGAACCTCCAGCACCAGACGCTCATTACCATTTTGCACCTCAAGAGCATCGTACACGCGCGGTACGGCATc                          >  1:2739531/1‑93 (MQ=255)
                                                               gATACCGCCGCCGAGCTGCTGCTGAAACTCCAGCACCAGACGCTCATTACAATTTTGCACCTCAAGAGCATCGTACACGCGCGGTACGGCATc                          >  1:4245102/1‑93 (MQ=255)
                                                                aTACCGCCGCCGAGCTGCTGCTGAACCTCCAGCACCAGACGCTCATTACCATTTTGCACCTCAAGAGCATCGTACACGCGCGGTACGGCATcc                         >  1:51496/1‑93 (MQ=255)
                                                                aTACCGCCGCCGAGCTGCTGCTGAACCTCCAGCACCAGACGCTCATTACCATTTTGCACCTCAAGAGCATCGTACACGCGCGGTACGGCATcc                         <  2:3484900/93‑1 (MQ=255)
                                                                aTACCGCCGCCGAGCTGCTGCTGAACCTCCAGCACCAGACGCTCATTACCATTTTGCACCTCAAGAGCATCGTACACGCGCGGTACGGCATcc                         >  2:2120514/1‑93 (MQ=255)
                                                                 tACCGCCGCCGAGCTGCTGCTGAACCTCCAGCACCAGACGCTCATTACCATTTTGCACCTCAAGAGCATCGTACACGCGCGGTACGGCATCCt                        >  1:1377113/1‑93 (MQ=255)
                                                                  aCCGCCGCCGAGCTGCTGCTGAACCTCCAGCACCAGACGCTCATTACCATTTTGCACCTCAAGAGCATCGTACACGCGCGGTACGGCATCCTg                       >  2:2777784/1‑93 (MQ=255)
                                                                   ccgccgcccAGCTACTGCTGAACCTCCAGCACCAGACGCTCATTACCATTTCGCACCTCAAGAGCATCGTACACGCGCGGTACGGCATCCTGa                      <  2:5966055/93‑1 (MQ=255)
                                                                     gccgccgAGCTGCTGCTGACCCTCCAGCACCAGACGCTCATTACCATTTTGCACCTCAAGAGCATCGTACACGCGCGGTACGGCATCCTGAgg                    <  2:1353701/93‑1 (MQ=255)
                                                                     gccgccgAGCTGCTGCTGAACCTCCAGCACCAGACGCTCATTACCATTTTGCACCTCAAGAGCATCGTACACGCGCGGTACGGCATCCTGAgg                    >  2:6141610/1‑93 (MQ=255)
                                                                     gccgccgAGCTGCTGCTGAACCTCCAGCACCAGACGCTCATTACCATTTTGCACCTCAAGAGCATCGTACACGCGCGGTACGGCATCCTGAgg                    >  2:5030980/1‑93 (MQ=255)
                                                                      ccgcggAGCTGCTGCTGAACCTCCAGCACCAGACGCTCATTACCATTTTGCACCTCAAGAGCATCGTACACGCGCGGTACGGCATCCTGAggg                   <  1:132008/93‑1 (MQ=255)
                                                                      ccgccgAGCTGCTGCTGAACCTCCAGCACCAGACGCTCATTACCATTTTGCACCTCAAGAGCATCGTACACGCGCGGTACGGCATCCTGAggg                   <  1:4722624/93‑1 (MQ=255)
                                                                       cgccgAGCTGCTGCTGAACCTCCAGCACCAGACGCTCATTACCATTTTGCACCTCAAGAGCATCGTACACGCGCGGTACGGCATCCTGAGGGa                  <  2:112097/93‑1 (MQ=255)
                                                                          cgAGCTGCTGCTGAACCTCCAGCACCAGACGCTCATTACCATTTTGCACCTCAAGAGCATCGTACACGCGCGGTACGGCATCCTGAGGGAAtt               >  1:6096790/1‑93 (MQ=255)
                                                                           gAGCTGCTGCTGAACCTCCAGCACCAGACGCTCATTACCATTTTGCACCTCAAGAGCATCGTACACGCGCGGTACGGCATCCTGAGGGAATTc              >  2:4967103/1‑93 (MQ=255)
                                                                           gAGCTGCTGCTGAACCTCCAGCACCAGACGCTCATTACCATTTTGCACCTCAAGAGCATCGTACACGCGCGGTACGGCATCCTGAGGGAATTc              >  2:461682/1‑93 (MQ=255)
                                                                           gAGCTGCTGCTGAACCTCCAGCACCAGACGCTCATTACCATTTTGCACCTCAAGAGCATCGTACACGCGCGGTACGGCATCCTGAGGGAATTc              <  1:2198446/93‑1 (MQ=255)
                                                                            aGCTGCTGCTGAACCTCCAGCACCAGACGCTCATTACCATTTTGCACCTCAAGAGCATCGTACACGCGCGGTACGGCATCCTGAGGGAATTCg             <  1:7895010/93‑1 (MQ=255)
                                                                             gctgctgctGAACCTCCAGCACCAGACGCTCATTACCATTTTGCACCTCAAGAGCATCGTACACGCGCGGTACGGCATCCTGAGGGGATTCGa            >  2:4829713/1‑93 (MQ=255)
                                                                             gctgctgctGAACCTCCAGCACCAGACGCTCATTACCATTTTGCACCTCAAGAGCATCGTACACGCGCGGTACGGCATCCTGAGGGAATTCGa            <  2:521112/93‑1 (MQ=255)
                                                                             cctgctgcttAACCTCCAGCACCAGACGCTCATTACCATTTTGCACCTCAAGAGCATCGTACACGCGCGGTACGGCATCCTGAGGGAATTCGa            <  1:6605889/92‑1 (MQ=255)
                                                                              ctgctgctgAACCTCCAGCACCAGACGCTCATTACCATTTTGCACCTCAAGAGCATCGTACACGCGCGGTACGGCATCCTGAGGGAATTCGAc           >  1:5705789/1‑93 (MQ=255)
                                                                               tgctgctgAACCTCCAGCACCAGATGCTCATTACCATTTTGCACCTCAAGAGCATCGTACACGCGCGGTACGGCATCCTGAGGGAATTCGACg          >  2:2972944/1‑93 (MQ=255)
                                                                                gctgctgAACCTCCAGCACCAGACGCTCATTACCATTTTGCACCTCAAGAGCATCGTACACGCGCGGTACGGCATCCTGAGGGAATTCGACgc         >  2:3190894/1‑92 (MQ=255)
                                                                                 ctgctgAACCTCAAGCACCAGACGCTCATTACCATTTTGCACCTCAAGAGCATCGTACACGCGCGGTACGGCATCCTGAGGGAATTCGACGTc        <  2:7357371/93‑1 (MQ=255)
                                                                                  tgctgAACCTCCAGCACCAGACGCTCATTACCATTTTGCACCTCAAGAGCATCGTACACGCGCGGTACGGCATCCTGAGGGAATTCGACGTCa       >  1:2883273/1‑93 (MQ=255)
                                                                                   gctgAACCTCCAGCACCAGACGCTCATTACCATTTTGCACCTCAAGAGCATCGTACACGCGCGGTACGGCATCCTGAGGGAATTCGACGTCaa      <  2:5722541/93‑1 (MQ=255)
                                                                                   gctgAACCTCCAGCACCAGACGCTCATTACCATTTTGCACCTCAAGAGCATCGTACACGCGCGGTACGGCATCCTGAGGGAATTCGACGTCaa      <  1:4442269/93‑1 (MQ=255)
                                                                                    ctgAACCTCCAGCACCAGACGCTCATTACCATTTTGCACCTCAAGAGCATCGTACACGCGCGGTACGGCATCCTGAGGGAATTCGACGTCaaa     >  1:1608662/1‑92 (MQ=255)
                                                                                       aaCCTCCAGCACCAGACGCTCATTACCATTTTGCACCTCAAGAGCATCGTACACGCGCGGTACGGCATCCTGAGGGAATTCGACGTCAACTAc  >  2:7826574/1‑93 (MQ=255)
                                                                                          |                                                                                         
GAGGTCTTTTACATCCAGACCGCGACGCAGACCGTCGGAGGAACCCATTGCGATGGTACGTACGATACCGCCGCCGAGCTGCTGCTGAACTTCCAGCACCAGACGCTCATTACCATTTTGCACCTCAAGAGCATCGTACACGCGCGGTACGGCATCCTGAGGGAATTCGACGTCAACTAC  >  NC_000913/3914788‑3914967

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 

GATK/CNVnator alignment

BRESEQ :: bam2aln output Only 200 of 241 total aligned reads displayed.
TTCGAGGTCTTTTACATCCAGACCGCGACGCAGACCGTCGGAGGAACCCATTGCGATGGTACGTACGATACCGCCGCCGAGCTGCTGCTGAACTTCCAGCACCAGACGCTCATTACCATTTTGCACCTCAAGAGCATCGTACACGCGCGGTACGGCATCCTGAGGGAATTCGACGTCAACTACGGCG  >  NC_000913/3914785‑3914971
                                                                                             |                                                                                             
TTCGAGGTCTTTTACATCCAGACCGCGACGCAGACCGTCGGAGGAACCCATTGCGATGGTACGTACGATACCGCCGCCGAGCTGCTGCTGAACC                                                                                               >  SRR4302543.3945081/1‑94 (MQ=60)
  CGAGGTCTTTTACATCCAGACCGCGACGCAGACCGTCGGAGGAACCCATTGCGATGGTACGTACGATACCGCCGCCGAGCTGCTGCTGAACCTC                                                                                             >  SRR4302543.2047656/1‑94 (MQ=60)
  CGAGGTCTTTTACATCCAGACCGCGACGCAGACCGTCGGAGGAACCCATTGCGATGGTACGTACGATACCGCCGCCGAGCTGCTGCTGAACCTC                                                                                             >  SRR4302543.7203695/1‑94 (MQ=60)
  CGAGGTCTTTTACATCCAGACCGCGACGCAGACCGTCGGAGGAACCCATTGCGATGGTACGTACGATACCGCCGCCGAGCTGCTGCTGAACCTC                                                                                             >  SRR4302543.2441254/1‑94 (MQ=60)
   GAGGTCTTTTACATCCAGACCGCGACGCAGACCGTCGGAGGAACCCATTGCGATGGTACGTACGATACCGCCGCCGCGCTGCTGCTGAACCTCC                                                                                            >  SRR4302543.6785135/1‑94 (MQ=60)
   GAGGTCTTTTACATCCAGACCGCGACGCAGACCGTCGGAGGAACCCATTGCGATGGTACGTACGATACCGCCGCCGAGCTGCTGCTGAACCTCC                                                                                            >  SRR4302543.4424319/1‑94 (MQ=60)
   GAGGTCTTTTACATCCAGACCGCGACGCAGACCGTCGGAGGAACCCATTGCGATGGTACGTACGATACCGCCGCCGAGCTGCTGCTGAACCTCC                                                                                            >  SRR4302543.5349381/1‑94 (MQ=60)
   GAGGTCTTTTACATCCAGACCGCGACGCAGACCGTCGGAGGAACCCATTGCGATGGTACGTACGATACCGCCGCCGAGCTGCTGCTGAACCTCC                                                                                            >  SRR4302543.6785136/1‑94 (MQ=60)
    AGGTCTTTTACATCCAGACCGCGACGCAGACCGTCGGAGGAACCCATTGCGATGGTACGTACGATACCGCCGCCGAGCTGCTGCTGAACCTCCA                                                                                           >  SRR4302543.7123944/1‑94 (MQ=60)
     GGTCTTTTACATCCAGACCGCGACGCAGACCGTCGGAGGAACCCATTGCGATGGTACGTACGCTACCGCCGCCGAGCTGCTGCTGAACCTCCAG                                                                                          >  SRR4302543.1812263/1‑94 (MQ=60)
     GGTCTTTTACATCCAGACCGCGACGCAGACCGTCGGAGGAACCCATTGCGATGGTACGTACGATACCGCCGCCGAGCTGCTGCTGAACCTCCAG                                                                                          >  SRR4302543.5471158/1‑94 (MQ=60)
     GGTCTTTTACATCCAGACCGCGACGCAGACCGTCGGAGGAACCCATTGCGATGGTACGTACGATACCGCCGCCGAGCTGCTGCTGAACCTCCAG                                                                                          >  SRR4302543.468594/1‑94 (MQ=60)
     GGTCTTTTACATCCAGACCGCGACGCAGACCGTCGGAGGAACCCATTGCGATGGTACGTACGATACCGCCGCCGAGCTGCTGCTGAACCTCCAG                                                                                          <  SRR4302543.5052453/94‑1 (MQ=60)
      GTCTTTTACATCCAGACCGCGACGCAGACCGTCGGAGGAACCCATTGCGATGGTACGTACGATACCGCCGCCGAGCTGCTGCTGAACCTCCAGC                                                                                         >  SRR4302543.5182623/1‑94 (MQ=60)
      GTCTTTTACATCCAGACCGCGACGCAGACCGTCGGAGGAACCCATTGCGATGGTACGTACGATACCGCCGCCGAGCTGCTGCTGAACCTCCAGC                                                                                         <  SRR4302543.5567475/94‑1 (MQ=60)
      GTCTTTTACATCCAGACCGCGACGCAGACCGTCGGAGGAACCCATTGCGATGGTACGTACGATACCGCCGCCGAGCTGCTGCTGAACCTCCAGC                                                                                         >  SRR4302543.1463540/1‑94 (MQ=60)
      GTCTTTTACATCCAGACCGCGACGCAGACCGCCGGAGGAACCCATTGCGCTGGTACGTACGATAACGCCGCCGAGCTGCTGCTGAGCCTCCAGC                                                                                         >  SRR4302543.4014344/1‑94 (MQ=60)
      GTCTTTTACATCCAGACCGCGAAGCAGACCGTCGGAGGAACCCATTGCGATGGTACGTACGATACCGCCGCCGAGCTGCTGCTGAACCTCCAGC                                                                                         >  SRR4302543.5448867/1‑94 (MQ=60)
       TCTTTTACATCCAGACCGCGACGCAGACCGTCGGAGGAACCCATTGCGATGGTACGTACGATACCGCCGCCGAGCTGCTGCTGAACCTCCAGCA                                                                                        >  SRR4302543.3206825/1‑94 (MQ=60)
       TCTTTTACATCCAGACCGCGACGCAGACCGTCGGAGGAACCCATTGCGATGGTACGTACGATACCGCCGCCGAGCTGCTGCTGAACCTCCAGCA                                                                                        >  SRR4302543.6255877/1‑94 (MQ=60)
        CTTTTACATCCAGACCGCGACGCAGACCGTCGGAGGAACCCATTGCGATGGTACGTACGATACCGCCGCCGAGCTGCTGCTGAACCTCCAGCAC                                                                                       >  SRR4302543.5281533/1‑94 (MQ=60)
        CTTTTACATCCAGACCGCGACGCAGACCGTCGGAGGAACCCATTGCGATGGTACGTACGATACCGCCGCCGAGCTGCTGCTGAACCTCCAGCAC                                                                                       >  SRR4302543.5722384/1‑94 (MQ=60)
        CTTTTACATCCAGACCGCGACGCAGACCGTCGGAGGAACCCATTGCGATGGTACGTACGATACCGCCGCCGAGCTGCTGCTGAACCTCCAGCAC                                                                                       >  SRR4302543.5585896/1‑94 (MQ=60)
        CTTTTACATCCAGACCGCGACGCAGACCGTCGGAGGAACCCATTGCGATGGTACGTACGATACCGCCGCCGAGCTGCTGCTGAACCTCCAGCAC                                                                                       >  SRR4302543.2370312/1‑94 (MQ=60)
        CTTTTACATCCAGACCGCGACGCAGACCGTCGGAGGAACCCATTGCGATGGTACGTACGATACCGCCGCCGAGCTGCTGCTGAACCTCCAGCAC                                                                                       >  SRR4302543.34744/1‑94 (MQ=60)
          TTTACATCCAGACCGCGACGCAGACCGTCGGAGGAACCCATTGCGATGGTACGTACGATACCGCCGCCGAGCTGCTGCTGAACCTCCAGCACCA                                                                                     >  SRR4302543.3286036/1‑94 (MQ=60)
           TTACATCCAGACCGCGACGCAGACCGTCGGAGGAACCCATTGCGATGGTACGTACGATACCGCCGCCGAGCTGCTGCTGAACCTCCAGCACCAG                                                                                    >  SRR4302543.5616142/1‑94 (MQ=60)
           TTACATCCAGACCGCGACGCAGACCGTCGGAGGAACCCATTGCGATGGTACGTACGATACCGCCGCCGAGCTGCTGCTGAACCTCCAGCACCAG                                                                                    <  SRR4302543.7859163/94‑1 (MQ=60)
            TACATCCAGACCGCGACGCAGACCGTCGGAGGAACCCATTGCGATGGTACGTACGATACCGCCGCCGAGCTGCTGCTGAACCTCCAGCACCAGA                                                                                   >  SRR4302543.6847148/1‑94 (MQ=60)
            TACATCCAGACCGCGACGCAGACCGTCGGAGGAACCCATTGCGATGGTACGTACGATACCGCCGCCGAGCTGCTGCTGAACCTCCAGCACCAGA                                                                                   <  SRR4302543.4208112/94‑1 (MQ=60)
             ACATCCAGACCGCGACGCAGACCGTCGGAGGAACCCATTGCGATGGTACGTACGATACCGCCGCCGAGCTGCTGCTGAACCTCCAGCACCAGAC                                                                                  >  SRR4302543.7616307/1‑94 (MQ=60)
             ACATCCAGACCGCGACGCAGACCGTCGGAGGAACCCATTGCGATGGTACGTACGATACCGCCGCCGAGCTGCTGCTGAACCTCCAGCACCAGAC                                                                                  <  SRR4302543.6261646/94‑1 (MQ=60)
             ACATCCAGACCGCGACGCAGACCGTCGGAGGAACCCATTGCGATGGTACGTACGATACCGCCGCCGAGCTGCTGCTGAACCTCCAGCACCAGAC                                                                                  >  SRR4302543.629934/1‑94 (MQ=60)
              CATCCAGACCGCGACGCAGACCGTCGGAGGAACCCATTGCGATGGTACGTACGATACCGCCGCCGAGCTGCTGCTGAACCTCCAGCACCAGACG                                                                                 <  SRR4302543.2358185/94‑1 (MQ=60)
              CATCCAGACCGCGACGCAGACCGTCGGAGGAACCCATTGCGATGGTACGTACGATACCGCCGCCGAGCTGCTGCTGAACCTCCAGCACCAGACG                                                                                 <  SRR4302543.107284/94‑1 (MQ=60)
              CATCCAGACCGCGACGCAGACCGTCGGAGGAACCCATTGCGATGGTACGTACGATACCGCCGCCGAGCTGCTGCTGAACCTCCAGCACCAGACG                                                                                 <  SRR4302543.4027372/94‑1 (MQ=60)
              CATCCAGACCGCGACGCAGACCGTCGGAGGAACCCATTGCGATGGTACGTACGATACCGCCGCCGAGCTGCTGCTGAACCTCCAGCACCAGACG                                                                                 <  SRR4302543.6799195/94‑1 (MQ=60)
              CATCCAGACCGCGACGCAGACCGTCGGAGGAACCCATTGCGATGGTACGTACGATACCGCCGCCGAGCTGCTGCTGAACCTCCAGCACCAGACG                                                                                 <  SRR4302543.4637522/94‑1 (MQ=60)
              CATCCAGACCGCGACGCAGACCGTCGGAGGAACCCATTGCGATGGTACGTACGATACCGCCGCCGAGCTGCTGCTGAACCTCCAGCACCAGACC                                                                                 >  SRR4302543.5719935/1‑94 (MQ=60)
               ATCCAGACCGCGACGCAGACCGTCGGAGGAACCCATTGCGATGGTACGTACGATACCGCCGCCGAGCTGCTGCTGAACCTCCAGCACCAGACGC                                                                                >  SRR4302543.3223558/1‑94 (MQ=60)
               ATCCAGACCGCGACGCAGACCGTCGGAGGAACCCATTGCGATGGTACGTACGATACCGCCGCCGAGCTGCTGCTGAACCTCCAGCACCAGACGC                                                                                >  SRR4302543.787102/1‑94 (MQ=60)
               ATCCAGACCGCGACGCAGACCGTCGGAGGAACCCATTGCGATGGTACGTACGATACCGCCGCCGAGCTGCTGCTGAACCTCCAGCACCAGACGC                                                                                >  SRR4302543.492241/1‑94 (MQ=60)
               ATCCAGACCGCGACGCAGACCGTCGGAGGAACCCATTGCGATGGTACGTACGATACCGCCGCCGAGCTGCTGCTGAACCTCCAGCACCAGACGC                                                                                <  SRR4302543.7325595/94‑1 (MQ=60)
                TCCAGACCGCGACGCAGACCGTCGGAGGAACCCATTGCGATGGTACGTACGATCCCGCCGCCGAGCTGCTGCTGAACCTCCAGCACCAGACGCT                                                                               <  SRR4302543.1629770/94‑1 (MQ=60)
                TCCAGACCGCGACGCAGACCGTCGGAGGAACCCATTGCGATGGTACGTACGATACCGCCGCCGAGCTGCTGCTGAACCTCCAGCACCAGACGCT                                                                               >  SRR4302543.3146032/1‑94 (MQ=60)
                TCCAGACCGCGACGCAGACCGTCGGAGGAACCCATTGCGATGGTACGTACGATACCGCCGCCGAGCTGCTGCTGAACCTCCAGCACCAGACGCT                                                                               <  SRR4302543.7723022/94‑1 (MQ=60)
                 CCAGACCGCGACGCAGACCGTCGGAGGAACCCATTGCGATGGTACGTACGATACCGCCGCCGAGCTGCTGCTGAACCTCCAGCACTAGACGCTC                                                                              >  SRR4302543.3762317/1‑94 (MQ=60)
                 CCAGACCGCGACGCAGACCGTCGGAGGAACCCATTGCGATGGTACGTACGATACCGCCGCCGAGCTGCTGCTGAACCTCCAGCACCAGACGCTC                                                                              >  SRR4302543.6090925/1‑94 (MQ=60)
                 CCAGACCGCGACGCAGACCGTCGGAGGAACCCATTGCGATGGTACGTACGATACCGCCGCCGAGCTGCTGCTGAACCTCCAGCACCAGACGCTC                                                                              >  SRR4302543.6215515/1‑94 (MQ=60)
                 CCAGACCGCGACGCAGACCGTCGGAGGAACCCATTGCGATGGTACGTACGATACCGCCGCAGAGCTGCTGCTGAACCTCCAGCACCAGACGCTC                                                                              >  SRR4302543.5548784/1‑94 (MQ=60)
                  CAGACCGCGACGCAGACCGTCGGAGGAACCCATTGCGATGGTACGTACGATACCGCCGCCGAGCTGCTGCTGAACCTCCAGCACCAGACGCTCA                                                                             <  SRR4302543.3189607/94‑1 (MQ=60)
                  CAGACCGCGACGCAGACCGTCGGAGGAACCCATTGCGATGGTACGTACGATACCGCCGCCGAGCTGCTGCTGAACCTCCAGCACCAGACGCTCA                                                                             >  SRR4302543.2916564/1‑94 (MQ=60)
                  CAGACCGCGACGCAGACCGTCGGAGGAACCCATTGCGATGGTACGTACGATACCGCCGCCGAGCTGCTGCTGAACCTCCAGCACCAGACGCTCA                                                                             >  SRR4302543.4884532/1‑94 (MQ=60)
                   AGACCGCGACGCAGACCGTCGGAGGAACCCATTGCGATGGTACGTACGATACCGCCGCCGAGCTGCTGCTGAACCTCCAGCACCCGACGCTCAT                                                                            >  SRR4302543.6817839/1‑94 (MQ=60)
                   AGACCGCGACGCAGACCGTCGGAGGAACCCATTGCGATGGTACGTACGATACCGCCGCCGAGCTGCTGCTGAACCTCCAGCACCAGACGCTCAT                                                                            <  SRR4302543.5447852/94‑1 (MQ=60)
                   AGACCGCGACGCAGACCGTCGGAGGAACCCATTGCGATGGTACGTACGATACCGCCGCCGAGCTGCTGCTGAACCTCCAGCACCAGACGCTCAT                                                                            <  SRR4302543.4712301/94‑1 (MQ=60)
                   AGACCGCGACGCAGACCGTCGGAGGAACCCATTGCGATGGTACGTACGATACCGCCGCCGAGCTGCTGCTGAACCTCCACCACCAGAAGCTCAT                                                                            >  SRR4302543.6737575/1‑94 (MQ=60)
                    GACCGCGACGCAGACCGTCGGAGGAACCCATTGCGATGGTACGTACGATACCGCCGCCGAGCTGCTGCTGAACCTCCAGCACCAGACGCTCATT                                                                           >  SRR4302543.7704216/1‑94 (MQ=60)
                    GACCGCGACGCAGACCGTCGGAGGAACCCATTGCGATGGTACGTACGATACCGCCGCCGAGCTGCTGCTGAACCTCCAGCACCAGACGCTCATT                                                                           <  SRR4302543.992216/94‑1 (MQ=60)
                     ACCGCGACGCAGACCGTCGGAGGAACCCATTGCGATGGTACGTACGATACCGCCGCCGAGCTGCTGCTGAACCTCCAGCACCAGACGCTCATTA                                                                          >  SRR4302543.32862/1‑94 (MQ=60)
                     ACCGCGACGCAGACCGTCGGAGGAACCCATTGCGATGGTACGTACGATACCGCCGCCGAGCTGCTGCTGAACCTCCAGCACCAGACGCTCATTA                                                                          >  SRR4302543.32863/1‑94 (MQ=60)
                      CCGCGACGCAGACCGTCGGAGGAACCCATTGCGATGGTACGTACGATACCGCCGCCGAGCTGCTGCTGAACCTCCAGCACCAGACGCTCATTAC                                                                         <  SRR4302543.3389851/94‑1 (MQ=60)
                      CCGCGACGCAGACCGTCGGAGGAACCCATTGCGATGGTACGTACGATACCGCCGCCGAGCTGCTGCTGAACCTCCAGCACCAGACGCTCATTAC                                                                         >  SRR4302543.7872966/1‑94 (MQ=60)
                      CCGCGACGCAGACCGTCGGAGGAACCCATTGCGATGGTACGTACGATACCGCCGCCGAGCTGCTGCTGAACCTCCAGCACCAGACGCTCATTAC                                                                         <  SRR4302543.2945528/94‑1 (MQ=60)
                      CCGCGACGCAGACCGTCGGAGGAACCCATTGCGATGGTACGTACGATACCGCCGCCGAGCTGCTGCTGAACCTCCAGCACCAGACGCTCATTAC                                                                         <  SRR4302543.638188/94‑1 (MQ=60)
                      CCGCGACGCAGACCGTCGGAGGAACCCATTGCGATGGTACGTACGATACCGCCGCCGAGCTGCTGCTGAACCTCCAGCACCAGACGCTCATTAC                                                                         >  SRR4302543.5153807/1‑94 (MQ=60)
                       CGCGACGCAGACCGTCGGAGGAACCCATTGCGATGGTACGTACGATACCGCCGCCGAGCTGCTGCTGAACCTCCAGCACCAGACGCTCATTACC                                                                        >  SRR4302543.7554516/1‑94 (MQ=60)
                        GCGCCGCAGACCGTCGAAGGATCCCATTGCGATGGTACGTACGATACCGCCGCCGAGCTGCTGCTGAACCTCCAGCACCAGACGCTCATTACCA                                                                       <  SRR4302543.3960593/94‑1 (MQ=60)
                         CGACGCAGACCGTCGGAGGAACCCATTGCGATGGTACGTACGATACCGCCGCCGAGCTGCTGCTGAACCTCCAGCACCAGACGCTCATTACCAT                                                                      <  SRR4302543.7926428/94‑1 (MQ=60)
                          GACGCAGACCGTCGGAGGAACCCATTGCGATGGTACGTACGATACCGCCGCCGAGCTGCTGCTGAACCTCCAGCACCAGACGCTCATTACCATT                                                                     <  SRR4302543.4310344/94‑1 (MQ=60)
                          GACGCAGACCGTCGGAGGAACCCATTGCGATGGTACGTACGATACCGCCGCCGAGCTGCTGCTGAACCTCCAGCACCAGACGCTCATTACCATT                                                                     >  SRR4302543.5931586/1‑94 (MQ=60)
                           ACGCAGACCGTCGGAGGAACCCATTGCGATGGTACGTACGATACCGCCGCCGAGCTGCTGCTGAACCTCCAGCACCAGACGCTCATTACCATTT                                                                    >  SRR4302543.6058538/1‑94 (MQ=60)
                           ACGCAGACCGTCGGAGGAACCCATTGCGATGGTACGTACGATACCGCCGCCGAGCTGCTGCTGAACCTCCAGCACCAGACGCTCATTACCATTT                                                                    <  SRR4302543.979373/94‑1 (MQ=60)
                            CGCAGACCGTCGGAGGAACCCATTGCGATGGTACGTACGATACCGCCGCCGAGCTGCTGCTGAACCTCCAGCACCAGACGCTCATTACCATTTT                                                                   >  SRR4302543.1765836/1‑94 (MQ=60)
                               AGACCGTCGGAGGAACCCATTGCGATGGTACGTACGATGCCGCCGCCGAGCTGCTCCTGAACCTCCAGCACCAGACGCTCATTACCATTTTGCA                                                                <  SRR4302543.7031802/94‑1 (MQ=60)
                               AGACCGTCGGAGGAACCCATTGCGATGGTACGTACGATACCGCCGCCGAGCTGCTGCTGAACCTCCAGCACCAGACGCTCATTACCATTTTGCA                                                                >  SRR4302543.963403/1‑94 (MQ=60)
                                GACCGTCGGAGGAACCCATTGCGATGGTACGTACGATACCGCCGCCGAGCTGCTGCTGAACCTCCAGCACCAGACGCTCATTACCATTTTGCAC                                                               <  SRR4302543.315434/94‑1 (MQ=60)
                                GACCGTCGGAGGAACCCATTGCGATGGTACGTACGATACCGCCGCCGAGCTGCTGCTGAACCTCCAGCACCAGACGCTCATTACCATTTTGCAC                                                               <  SRR4302543.7225706/94‑1 (MQ=60)
                                GACCGTCGGAGGAACCCATTGCGATGGTACGTACGATACCGCCGCCGAGCTGCTGCTGAACCTCCAGCACCAGACGCTCATTACCATTTTGCAC                                                               <  SRR4302543.3300437/94‑1 (MQ=60)
                                 ACCGTCGGAGGAACCCATTGCGATGGTACGTACGATACCGCCGCCGAGCTGCTGCTGAACCTCCAGCACCAGACGCTCATTACCATTTTGCACC                                                              <  SRR4302543.4005124/94‑1 (MQ=60)
                                   CGTCGGAGGAACCCATTGCGATGGTACGTACGATACCGCCGCCGAGCTGCTGCTGAACCTCCAGCACCAGACGCTCATTACCATTTTGCACCTC                                                            >  SRR4302543.1825347/1‑94 (MQ=60)
                                   CGTCGGAGGAACCCATTGCGATGGTACGTACGATACCGCCGCCGAGCTGCTGCTGAACCTCCAGCACCAGACGCTCATTACCATTTTGCACCTA                                                            >  SRR4302543.6344007/1‑94 (MQ=60)
                                    GTCGGAGGAACCCATTGCGATGGTACGTACGATACCGCCGCCGAGCTGCTGCTGAACCTCCAGCACCAGACGCTCATTACCATTTTGCACCTCA                                                           >  SRR4302543.1019732/1‑94 (MQ=60)
                                     TCGGAGGAACCCATTGCGATGGTACGTACGATACCGCCGCCGAGCTGCTGCTGAACCTCCAGCACCAGACGCTCATTACCATTTTGCACCTCAA                                                          >  SRR4302543.1582679/1‑94 (MQ=60)
                                      CGGAGGAACCCATTGCGATGGTACGTACGATACCGCCGCCGAGCTGCTGCTGAACTTCCAGCACCAGACGCTCATTACCATTTTGCACCTCAAG                                                         >  SRR4302543.7439074/1‑94 (MQ=60)
                                      CGGAGGAACCCATTGCGATGGTACGTACGATACCGCCGCCGAGCTGCTGCTGAACCTCCAGCACCAGACGCTCATTACCATTTTGCACCTCAAG                                                         >  SRR4302543.3848007/1‑94 (MQ=60)
                                      CGGAGGAACCCATTGCGATGGTACGTACGATACCGCCGCCGAGCTGCTGCTGAACCTCCAGCACCAGACGCTCATTACCATTTTGCACCTCAAG                                                         >  SRR4302543.3493222/1‑94 (MQ=60)
                                      CGGAGGAACCCATTGCGATGGTACGTACGATACCGCCGCCGAGCTGCTGCTGAACCTCCAGCACCAGACGCTCATTACCATTTTGCACCTCAAG                                                         <  SRR4302543.3717042/94‑1 (MQ=60)
                                       GGAGGAACCCATTGCGATGGTACGTACGATACCGCCGCCGAGCTGCTGCTGAACCTCCAGCACCAGACGCTCATTACCATTTTGCACCTCAAGA                                                        <  SRR4302543.7648711/94‑1 (MQ=60)
                                       GGAGGAACCCATTGCGATGGTACGTACGATACCGCCGCCGAGCTGCTGCTGAACCTCCAGCACCAGACGCTCATTACCATTTTGCACCTCAAGA                                                        >  SRR4302543.2683693/1‑94 (MQ=60)
                                       GGAGGAACCCATTGCGATGGTACGTACGATACCGCCGCCGAGCTGCTGCTGAACCTCCAGCACCAGACGCTCATTACCATTTTGCACCTCAAGA                                                        <  SRR4302543.2622734/94‑1 (MQ=60)
                                       GGAGGAACCCATTGCGATGGTACGTACGATACCGCCGCCGAGCTGCTGCTGAACCTCCAGCACCAGACGCTCATTACCATTTTGCACCTCAAGA                                                        >  SRR4302543.5022611/1‑94 (MQ=60)
                                        GAGGAACCCATTGCGATGGTACGTACGATACCGCCGCCGAGCTGCTGCTGAACCTCCAGCACCAGACGCTCATTACCATTTTGCACCTCAAGAG                                                       >  SRR4302543.6842902/1‑94 (MQ=60)
                                        GAGGAACCCATTGCGATGGTACGTACGATACCGCCGCCGAGCTGCTGCTGAACCTCCAGCACCAGACGCTCATTACCATTTTGCACCTCAAGAG                                                       >  SRR4302543.2847413/1‑94 (MQ=60)
                                        GAGGAACCCATTGCGATGGTACGTACGATACCGCCGCCGAGCTGCTGCTGAACCTCCAGCACCAGACGCTCATTACCATTTTGCACCTCAAGAG                                                       <  SRR4302543.935857/94‑1 (MQ=60)
                                        GAGGAACCCATTGCGATGGTACGTACGATACCGCCGCCGAGCTGCTGCTGAACCTCCAGCACCAGACGCTCATTACCATTTTGCACCTCAAGAG                                                       <  SRR4302543.7169322/94‑1 (MQ=60)
                                        GAGGAACCCATTGCGATGGTACGTACGATACCGCCGCCGAGCTGCTGCTGAACCTCCAGCACCAGACGCTCATTACCATTTTGCACCTCAAGAG                                                       <  SRR4302543.2354413/94‑1 (MQ=60)
                                           GAACCCATTGCGATGGTACGTACGATACCGCCGCCGAGCTGCTGCTGAACCTCCAGCACCAGACGCTCATTACCATTTTGCACCTCAAGAGCAT                                                    <  SRR4302543.4449655/94‑1 (MQ=60)
                                           GAACCCATTGCGATGGTACGTACGATACCGCCGCCGAGCTGCTGCTGAACCTCCAGCACCAGACGCTCATTACCATTTTGCACCTCAAGAGCAT                                                    <  SRR4302543.3124616/94‑1 (MQ=60)
                                           GAACCCATTGCGATGGTACGTACGATACCGCCGCCGAGCTGCTGCTGAACCTCCAGCACCAGACGCTCATTACCATTTTGCACCTCAAGAGCAT                                                    <  SRR4302543.7542717/94‑1 (MQ=60)
                                             ACCCATTGCGATGGTACGTACGATACCGCCGCCGAGCTGCTGCTGAACCTCCAGCACCAGACGCTCATTACCATTTTGCACCTCAAGAGCATCG                                                  <  SRR4302543.5212139/94‑1 (MQ=60)
                                             ACCCATTGCGATGGTACGTACGATACCGCCGCCGAGCTGCTGCTGAACCTCCAGCACCAGACGCTCATTACCATTTTGCACCTCAAGAGCATCG                                                  <  SRR4302543.7687644/94‑1 (MQ=60)
                                             ACCCATTGCGATGGTACGTACGATACCGCCGCCGAGCTGCTGCTGAACCTCCAGCACCAGACGCTCATTACCATTTTGCACCTCAAGAGCATCG                                                  >  SRR4302543.1815051/1‑94 (MQ=60)
                                              CCCATTGCGATGGTACGTACGATACCGCCGCCGAGCTGCTGCTGAACCTCCAGCACCAGACGCTCATTACCATTTTGCACCTCAAGAGCATCGT                                                 >  SRR4302543.6223353/1‑94 (MQ=60)
                                              CCCATTGCGATGGTACGTACGATACCGCCGCCGAGCTGCTGCTGAACCTCCAGCACCAGACGCTCATTACCATTTTGCACCTCAAGAGCATCGT                                                 >  SRR4302543.6360748/1‑94 (MQ=60)
                                                CATTGCGATGGGACGTACGATACCGCCGCCGAGCTGCTGCTGAACTTCCAGCGCGAGACGCTCCTTACGATTTTGCACCTCGAGAGCATCGTAC                                               >  SRR4302543.6641059/1‑94 (MQ=60)
                                                 CTTGCGATGGTACGTACGATACCGCCGCCGAGCTGCTGCTGAACCTCCAGCACCAGACGCTCATTACCATTTTGCACCTCAAGAGCATCGTACA                                              <  SRR4302543.1364317/94‑1 (MQ=60)
                                                 ATTGCGATGGTACGTACGATACCGCCGCCGAGCTGCTGCTGAACCTCCAGCACCAGACGCTCATTACCATTTTGCACCTCAAGAGAATCGTACA                                              <  SRR4302543.4357305/94‑1 (MQ=60)
                                                 ATTGCGATGGTACGTACGATACCGCCGCCGAGCTGCTGCTGAACCTCCAGCACCAGACGCTCATTACCATTTTGCAACTCAAGAGCATCGTACA                                              >  SRR4302543.7268212/1‑94 (MQ=60)
                                                  TTGCGATGGTACGTACGATACCGCCGCCGAGCTGCTGCTGAACCTCCAGCACCAGACGCTCATTACCATTTTGCACCTCAAGAGCATCGTACAC                                             <  SRR4302543.5586665/94‑1 (MQ=60)
                                                   TGCGATGGTACGTACGATACCGCCGCCGAGCTGCTGCTGAACCTCCAGCACCAGACGCTCATTACCATTTTGCACCTCAAGAGCATCGTACACG                                            <  SRR4302543.2787002/94‑1 (MQ=60)
                                                     CGATGGTACGTACGATACCGCCGCCGAGCTGCTGCTGAACCTCCAGCACCAGACGCTCATTACCATTTTGCACCTCAAGAGCATCGTACACGCG                                          <  SRR4302543.6107901/94‑1 (MQ=60)
                                                     CGATGGTACGTACGATACCGCCGCCGAGCTGCTGCTGAACCTCCAGCACCAGACGCTCATTACCATTTTGCACCTCAAGAGCATCGTACACGCG                                          >  SRR4302543.7055572/1‑94 (MQ=60)
                                                     CGATGGTACGTACGATACCGCCGCCGAGCTGCTGCTGAACCTCCAGCACCAGACGCTCATTACCATTTTGCACCTCAAGACCATCGTACAGGCG                                          >  SRR4302543.6555462/1‑94 (MQ=60)
                                                     CGATGGTACGTACGATACCGCCGCCGAGCTGCTGCTGAACCTCCAGCACCAGACGCTCATTACCATGTTGCACCTCAAGAGCATCGTACACGCG                                          >  SRR4302543.7348729/1‑94 (MQ=60)
                                                      GATGGTACGTACGATACCGCCGCCGAGCTGCTGCTGAACCTCCAGCACCAGACGCTCATTACCATTTTGCACCTCAAGAGCATCGTACACGCGC                                         >  SRR4302543.5735286/1‑94 (MQ=60)
                                                      GATGGTACGTACGATACCGCCGCCGAGCTGCTGCTGAACCTCCAGCACCAGACGCTCATTACCATTTTGCACCTCAAGAGCATCGTACACGCGC                                         >  SRR4302543.5639589/1‑94 (MQ=60)
                                                      GATGGTACGTACGATACCGCCGCCGAGCTGCTGCTGAACCTCCAGCACCAGACGCTCATTACCATTTTGCACCTCAAGAGCATCGTACACGCGC                                         >  SRR4302543.1635155/1‑94 (MQ=60)
                                                      GATGGTACGTACGATACCGCCGCCGAGCTGCTGCTGAACCTCCAGCACCAGACGCTCATTACCATTTTGCACCTCAAGAGCATCGTACACGCGC                                         <  SRR4302543.4886295/94‑1 (MQ=60)
                                                       ATGGTACGTACGATACCGCCGCCGAGCTGCTGCTGAACCTCCAGCACCAGACGCTCATTACCATTTTGCACCTCAAGAGCATCGTACACGCGCG                                        >  SRR4302543.3076477/1‑94 (MQ=60)
                                                       ATGGTACGTACGATACCGCCGCCGAGCTGCTGCTGAACCTCCAGCACCAGACGCTCATTACCATTTTGCACCTCAAGAGCATCGTACACGCGCG                                        >  SRR4302543.2247708/1‑94 (MQ=60)
                                                       ATGGTACGTACGATACCGCCGCCGAGCTGCTGCTGAACCTCCAGCACCAGACGCTCATTACCATTTTGCACCTCAAGAGCATCGTACACGCGCG                                        >  SRR4302543.3752915/1‑94 (MQ=60)
                                                        TGGTACGTACGATACCGCCGCCGAGCTGCTGCTGAACCTCCAGCACCAGACGCTCATTACCATTTTGCACCTCAAGAGCATCGTACACGCGCGG                                       >  SRR4302543.4822106/1‑94 (MQ=60)
                                                         GGTACGTACGATACCGCCGCCGAGCTGCTGCTGAACCTCCAGCACCAGACGCTCATTACCATTTTGCACCTCAAGAGCATCGTACACGCGCGGT                                      <  SRR4302543.4994997/94‑1 (MQ=60)
                                                         GGTACGTACGATACCGCCGCCGAGCTGCTGCTGAACCTCCAGCACCAGACGCTCATTACCATTTTGCACCTCAAGAGCATCGTACACGCGCGGT                                      >  SRR4302543.5062226/1‑94 (MQ=60)
                                                          GTACGTACGATACCGCCGCCGAGCTGCTGCTGAACCTCCAGCACCAGACGCTCATTACCATTTTGCACCTCAAGAGCATCGTACACGCGCGGTA                                     <  SRR4302543.4487050/94‑1 (MQ=60)
                                                          GTACGTACGATACCGCCGCCGAGCTGCTGCTGAACCTCCAGCACCAGACGCTCATTACCATTTTGCACCTCAAGAGCATCGTACACGCGCGGTA                                     >  SRR4302543.2340039/1‑94 (MQ=60)
                                                           TACGTACGATACCGCCGCCGAGCTGCTGCTGAACCTCCAGCACCAGACGCTCATTACCATTTTGCACCTCAAGAGCATCGTACACGCGCGGTAC                                    <  SRR4302543.2573238/94‑1 (MQ=60)
                                                            ACGTACGATACCGCCGCCGAGCTGCTGCTGAACCTCCAGCACCAGACGCTCATTACCATTTTGCACCTCAAGAGCATCGTACACGCGCGGTACG                                   >  SRR4302543.2480866/1‑94 (MQ=60)
                                                            ACGTACGATACCGCCGCCGAGCTGCTGCTGAACCTCCAGCACCAGACGCTCATTACCATTTTGCACCTCAAGAGCATCGTACACGCGCGGTACG                                   <  SRR4302543.3387280/94‑1 (MQ=60)
                                                            ACGTACGATACCGCCGCCGAGCTGCTGCTGAACCTCCAGCACCAGACGCTCATTACCATTTTGCACCTCAAGAGCATCGTACACGCGCGGTACG                                   <  SRR4302543.1874906/94‑1 (MQ=60)
                                                            ACGTACGATACCGCCGCCGAGCTGCTGCTGAACCTCCAGCACCAGACGCTCATTACCATTTTGCACCTCAAGAGCATCGTACACGCGCGGTACG                                   <  SRR4302543.2811178/94‑1 (MQ=60)
                                                             CGTACGATACCGCCGCCGAGCTGCTGCTGAACCTCCAGCACCAGACGCTCATTACCATTTTGCACCTCAAGAGCATCGTACACGCGCGGTACGG                                  >  SRR4302543.4501820/1‑94 (MQ=60)
                                                              GTACGATACCGCCGCCGAGCTGCTGCTGAACCTCCAGCACCAGACGCTCATTACCATTTTGCACCTCAAGAGCATCGTACACGCGCGGTACGGC                                 >  SRR4302543.551287/1‑94 (MQ=60)
                                                                ACGATACCGCCGCCGAGCTGCTGCTGAACCTCCAGCACCAGACGCTCATTACCATTTTGCACCTCAAGAGCATCGTACACGCGCGGTACGGCAT                               <  SRR4302543.5121805/94‑1 (MQ=60)
                                                                ACGATACCGCCGCCGAGCTGCTGCTGAACCTCCAGCACCAGACGCTCATTACCATTTTGCACCTCAAGAGCATCGTACACGCGCGGTACGGCAT                               <  SRR4302543.6665742/94‑1 (MQ=60)
                                                                 CGATACCGCCGCCGAGCTGCTGCTGAACCTCCAGCACCAGACGCTCATTACCATTTTGCACCTCAAGAGCATCGTACACGCGCGGTACGGCATC                              >  SRR4302543.3423824/1‑94 (MQ=60)
                                                                 CGATACCGCCGCCGAGCTGCTGCTGAACCTCCAGCACCAGACGCTCATTACCATTTTGCACCTCAAGAGCATCGTACACGCGCGGTACGGCATC                              >  SRR4302543.2764452/1‑94 (MQ=60)
                                                                 CGATACCGCCGCCGAGCTGCTGCTGAACCTCCAGCACCAGACGCTCATTACCATTTTGCACCTCAAGAGCATCGTACACGCGCGGTACGGCATC                              <  SRR4302543.1069772/94‑1 (MQ=60)
                                                                 CGATACCGCCGCCGAGCTGCTGCTGAAACTCCAGCACCAGACGCTCATTACAATTTTGCACCTCAAGAGCATCGTACACGCGCGGTACGGCATC                              >  SRR4302543.4283625/1‑94 (MQ=60)
                                                                  GATACCGCCGCCGAGCTGCTGCTGAACCTCCAGCACCAGACGCTCATTACCATTTTGCACCTCAAGAGCATCGTACACGCGCGGTACGGCATCC                             >  SRR4302543.5603660/1‑94 (MQ=60)
                                                                  GATACCGCCGCCGAGCTGCTGCTGAACCTCCAGCACCAGACGCTCATTACCATTTTGCACCTCAAGAGCATCGTACACGCGCGGTACGGCATCC                             >  SRR4302543.51955/1‑94 (MQ=60)
                                                                   ATACCGCCGCCGAGCTGCTGCTGAACCTCCAGCACCAGACGCTCATTACCATTTTGCACCTCAAGAGCATCGTACACGCGCGGTACGGCATCCT                            <  SRR4302543.3967036/94‑1 (MQ=60)
                                                                   ATACCGCCGCCGAGCTGCTGCTGAACCTCCAGCACCAGACGCTCATTACCATTTTGCACCTCAAGAGCATCGTACACGCGCGGTACGGCATCCT                            >  SRR4302543.3720509/1‑94 (MQ=60)
                                                                   ATACCGCCGCCGAGCTGCTGCTGAACCTCCAGCACCAGACGCTCATTACCATTTTGCACCTCAAGAGCATCGTACACGCGCGGTACGGCATCCT                            >  SRR4302543.1389487/1‑94 (MQ=60)
                                                                     ACCGCCGCCGAGCTGCTGCTGAACCTCCAGCACCAGACGCTCATTACCATTTTGCACCTCAAGAGCATCGTACACGCGCGGTACGGCATCCTGA                          >  SRR4302543.1388679/1‑94 (MQ=60)
                                                                      CCGCCGCCGAGCTGCTGCTGAACCTCCAGCACCAGACGCTCATTACCATTTTGCACCTCAAGAGCATCGTACACGCGCGGTACGGCATCCTGAG                         <  SRR4302543.4899483/94‑1 (MQ=60)
                                                                      CCGCCGCCGAGCTGCTGCTGAACCTCCAGCACCAGACGCTCATTACCATTTTGCACCTCAAGAGCATCGTACACGCGCGGTACGGCATCCTGAG                         >  SRR4302543.5663707/1‑94 (MQ=60)
                                                                       CGCCGCCGAGCTGCTGCTGAACCTCCAGCACCAGACGCTCATTACCATTTTGCACCTCAAGAGCATCGTACACGCGCGGTACGGCATCCTGAGG                        <  SRR4302543.5384074/94‑1 (MQ=60)
                                                                       CGCCGCCGAGCTGCTGCTGAACCTCCAGCACCAGACGCTCATTACCATTTTGCACCTCAAGAGCATCGTACACGCGCGGTACGGCATCCTGAGG                        <  SRR4302543.123661/94‑1 (MQ=60)
                                                                       CGCCGCCGAGCTGCTGCTGAACCTCCAGCACCAGACGCTCATTACCATTTTGCACCTCAAGAGCATCGTACACGCGCGGTACGGCATCCTGAGG                        <  SRR4302543.3892506/94‑1 (MQ=60)
                                                                       CGCCGCCGAGCTGCTGCTGAACCTCCAGCACCAGACGCTCATTACCATTTTGCACCTCAAGAGCATCGTACACGCGCGGTACGGCATCCTGAGG                        >  SRR4302543.4500099/1‑94 (MQ=60)
                                                                       CGCCGCCGAGCTGCTGCTGAACCTCCAGCACCAGACGCTCATTACCATTTTGCACCTCAAGAGCATCGTACACGCGCGGTACGGCATCCTGAGG                        <  SRR4302543.3624315/94‑1 (MQ=60)
                                                                         CCGCGGAGCTGCTGCTGAACCTCCAGCACCAGACGCTCATTACCATTTTGCACCTCAAGAGCATCGTACACGCGCGGTACGGCATCCTGAGGGA                      <  SRR4302543.133184/94‑1 (MQ=60)
                                                                         CCGCCGAGCTGCTGCTGAACCTCCAGCACCAGACGCTCATTACCATTTTGCACCTCAAGAGCATCGTACACGCGCGGTACGGCATCCTGAGGGA                      <  SRR4302543.4765772/94‑1 (MQ=60)
                                                                          CGCCGAGCTGCTGCTGAACCTCCAGCACCAGACGCTCATTACCATTTTGCACCTCAAGAGCATCGTACACGCGCGGTACGGCATCCTGAGGGAA                     <  SRR4302543.741640/94‑1 (MQ=60)
                                                                            CCGAGCTGCTGCTGAACCTCCAGCACCAGACGCTCATTACCATTTTGCACCTCAAGAGCATCGTACACGCGCGGTACGGCATCCTGAGGGAATT                   >  SRR4302543.6154559/1‑94 (MQ=60)
                                                                            CCGAGCTGCTGCTGAACCTCCAGCACCAGACGCTCATTACCATTTTGCACCTCAAGAGCATCGTACACGCGCGGTACGGCATCCTGAGGGAATT                   <  SRR4302543.3678894/94‑1 (MQ=60)
                                                                            CCGAGCTGCTGCTGAACCTCCAGCACCAGACGCTCATTACCATTTTGCACCTCAAGAGCATCGTACACGCGCGGTACGGCATCCTGAGGGAATT                   >  SRR4302543.7305411/1‑94 (MQ=60)
                                                                             CGAGCTGCTGCTGAACCTCCAGCACCAGACGCTCATTACCCTTTTGCACCTCCAGAGCATCGTACACGCGCGGTACGGCATCCTGAGGGGATTC                  >  SRR4302543.3855095/1‑94 (MQ=60)
                                                                             CGAGCTGCTGCTGAACCTCCAGCACCAGACGCTCATTACCATTTTGCACCTCAAGAGCATCGTACACGCGCGGTACGGCATCCTGAGGGAATTC                  <  SRR4302543.7491919/94‑1 (MQ=60)
                                                                             CGAGCTGCTGCTGAACCTCCAGCACCAGACGCTCATTACCATTTTGCACCTCAAGAGCATCGTACACGCGCGGTACGGCATCCTGAGGGAATTC                  >  SRR4302543.1466978/1‑94 (MQ=60)
                                                                              GAGCTGCTGCTGAACCTCCAGCACCAGACGCTCATTACCATTTTGCACCTCAAGAGCATCGTACACGCGCGGTACGGCATCCTGAGGGAATTCG                 <  SRR4302543.2218214/94‑1 (MQ=60)
                                                                               AGCTGCTGCTGAACCTCCAGCACCAGACGCTCATTACCATTTTGCACCTCAAGAGCATCGTACACGCGCGGTACGGCATCCTGAGGGAATTCGA                <  SRR4302543.7969249/94‑1 (MQ=60)
                                                                                gcgcCTGCTGAACCTCCAGCGCCAGACGCTCAGTACCATTGTGCACCTCAAGAGCATCGTACACGCGCGGTACGGCATCCTGAGGGAATTCGAC               <  SRR4302543.197514/90‑1 (MQ=60)
                                                                                GCTGCTGCTGAACCTCCAGCACCAGACGCTCATTACCATTTTGCACCTCAAGAGCATCGTACACGCGCGGTACGGCATCCTGAGGGAATTCGAC               <  SRR4302543.3277456/94‑1 (MQ=60)
                                                                                GCTGCTGCTGAACCTCCAGCACCAGACGCTCATTACCATTTTGCACCTCAAGAGCATCGTACACGCGCGGTACGGCATCCTGAGGGAATTCGAC               <  SRR4302543.6668145/94‑1 (MQ=60)
                                                                                GCTGCTGCTGAACCTCCAGCACCAGACGCTCATTACCATTTTGCACCTCAAGAGCATCGTACACGCGCGGTACGGCATCCTGAGGGAATTCGAC               <  SRR4302543.3225577/94‑1 (MQ=60)
                                                                                GCTGCTGCTGAACCTCCAGCACCAGACGCTCATTACCATTTTGCACCTCAAGAGCATCGTACACGCGCGGTACGGCATCCTGAGGGAATTCGAC               >  SRR4302543.5757833/1‑94 (MQ=60)
                                                                                 CTGCTGCTGAACCTCCAGCACCAGACGCTCATTACCATTTTGCACCTCAAGAGCATCGTACACGCGCGGTACGGCATCCTGAGGGAATTCGACG              <  SRR4302543.4262779/94‑1 (MQ=60)
                                                                                 CTGCTGCTGAACCTCCAGCACCAGACGCTCATTACCATTTTGCACCTCAAGAGCATCGTACACGCGCGGTACGGCATCCTGAGGGAATTCGACG              >  SRR4302543.6447088/1‑94 (MQ=60)
                                                                                 CTGCTGCTGAACCTCCAGCACCAGACGCTCATTACCATTTTGCACCTCAAGAGCATCGTACACGCGCGGTACGGCATCCTGAGGGAATTCGACG              >  SRR4302543.438773/1‑94 (MQ=60)
                                                                                 CTGCTGCTGAACCTCCAGCACCAGACGCTCATTACCATTTTGCACCTCAAGAGCATCGTACACGCGCGGTACGGCATCCTGAGGGAATTCGACG              >  SRR4302543.3583564/1‑94 (MQ=60)
                                                                                 CTGCTGCTGAACCTCCAGCACCAGACGCTCATTACCATTTTGCACCTCAAGAGCATCGTACACGCGCGGTACGGCATCCTGAGGGAATTCGACG              >  SRR4302543.617321/1‑94 (MQ=60)
                                                                                 CTGCTGCTGAACCTCCAGCACCAGACGCTCATTACCATTTTGCACCGCAAGAGCATCGTACACGCGCGGTACGGCATCCTGAGGGAATTCGACG              <  SRR4302543.4262778/94‑1 (MQ=60)
                                                                                   GCTGCTGAACCTCCAGCACCAGACGCTCATTACCATTTTGCACCTCAAGAGCATCGTACACGCGCGGTACGGCATCCTGAGGGAATTCGACGTC            <  SRR4302543.4288014/94‑1 (MQ=60)
                                                                                    CTGCTGAACCTCCAGCACCAGACGCTCATTACCATTTTGCACCTCAAGAGCATCGTACACGCGCGGTACGGCATCCTGAGGGAATTCGACGTCA           >  SRR4302543.2909512/1‑94 (MQ=60)
                                                                                      GCTGAACCTCCAGCACCAGACGCTCATTACCATTTTGCACCTCAAGAGCATCGTACACGCGCGGTACGGCATCCTGAGGGAATTCGACGTCAAC         <  SRR4302543.4482496/94‑1 (MQ=60)
                                                                                      GCTGAACCTCCAGCACCAGACGCTCATTACCATTTTGCACCTCAAGAGCATCGTACACGCGCGGTACGGCATCCTGAGGGAATTCGACGTCAAC         <  SRR4302543.5096445/94‑1 (MQ=60)
                                                                                      GCTGAACCTCCAGCACCAGACGCTCATTACCATTTTGCACCTCAAGAGCATCGTACACGCGCGGTACGGCATCCTGAGGGAATTCGACGTCAAA         >  SRR4302543.1623014/1‑94 (MQ=60)
                                                                                       CTGAACCTCCAGCACCAGACGCTCATTACCATTTTGCACCTCAAGAGCATCGTACACGCGCGGTACGGCATCCTGAGGGAATTCGACGTCAACT        >  SRR4302543.6824487/1‑94 (MQ=60)
                                                                                       CTGAACCTCCAGCACCAGACGCTCATTACCATTTTGCACCTCAAGAGCATCGTACACGCGCGGTACGGCATCCTGAGGGAATTCGACGTCAACT        >  SRR4302543.3127856/1‑94 (MQ=60)
                                                                                       CTGAACCTCCAGCACCAGACGCTCATTACCATTTTGCACCTCAAGAGCATCGTACACGCGCGGTACGGCATCCTGAGGGAATTCGACGTCAACT        >  SRR4302543.5774229/1‑94 (MQ=60)
                                                                                       CTGAACCTCCAGCACCAGACGCTCATTACCATTTTGCACCTCAAGAGCATCGTACACGCGCGGTACGGCATCCTGAGGGAATTCGACGTCAACA        >  SRR4302543.2144506/1‑94 (MQ=60)
                                                                                        TGAACCTCCAGCACCAGACGCTCATTACCATTTTGCACCTCAAGAGCATCGTACACGCGCGGTACGGCATCCTGAGGGAATTCGACGTCAACTA       >  SRR4302543.4022917/1‑94 (MQ=60)
                                                                                        TGAACCTCCAGCACCAGACGCTCATTACCATTTTGCACCTCAAGAGCATCGTACACGCGCGGTACGGCATCCTGAGGGAATTCGACGTCAACTA       >  SRR4302543.4022918/1‑94 (MQ=60)
                                                                                        TGAACCTCCAGCACCAGACGCTCATTACCATTTTGCACCTCAAGAGCATCGTACACGCGCGGTACGGCATCCTGAGGGAATTCGACGTCAACTA       >  SRR4302543.2950902/1‑94 (MQ=60)
                                                                                        TGAACCTCCAGCACCAGACGCTCATTACCATTTTGCACCTCAAGAGCATCGTACACGCGCGGTACGGCATCCTGAGGGAATTCGACGTCAACTA       <  SRR4302543.3044377/94‑1 (MQ=60)
                                                                                         GAACCTCCAGCACCAGACGCTCATTACCATTTTGCACCTCAAGAGCATCGTACACGCGCGGTACGGCATCCTGAGGGAATTCGACGTCAACTAC      <  SRR4302543.5236103/94‑1 (MQ=60)
                                                                                         GAACCTCCAGCACCAGACGCTCATTACCATTTTGCACCTCAAGAGCATCGTACACGCGCGGTACGGCATCCTGAGGGAATTCGACGTCAACTAC      <  SRR4302543.5729122/94‑1 (MQ=60)
                                                                                         GAACCTCCAGCACCAGACGCTCATTACCATTTTGCACCTCAAGAGCATCGTACACGCGCGGTACGGCATCCTGAGGGAATTCGACGTCAACTAC      <  SRR4302543.6667004/94‑1 (MQ=60)
                                                                                         GAACCTCCAGCACCAGACGCTCATTACCATTTTGCACCTCAAGAGCATCGTACACGCGCGGTACGGCATCCTGAGGGAATTCGACGTCAACTAC      <  SRR4302543.4053550/94‑1 (MQ=60)
                                                                                          AACCTCCAGCCCCAGACGCTCATTACCATTTTGCACCTCAAGAGCATCGTACACGCGCGGTACGGCATCCTGAGGGAATTCGACGTCAACTACG     <  SRR4302543.5917779/94‑1 (MQ=60)
                                                                                          AACCTCCAGCACCAGACGCTCATTACCATTTTGCACCTCAAGAGCATCGTACACGCGCGGTACGGCATCCTGAGGGAATTCGACGTCAACTACG     >  SRR4302543.460875/1‑94 (MQ=60)
                                                                                          AACCTCCAGCACCAGACGCTCATTACCATTTTGCACCTCAAGAGCATCGTACACGCGCGGTACGGCATCCTGAGGGAATTCGACGTCAACTACG     <  SRR4302543.4648205/94‑1 (MQ=60)
                                                                                           ACCTCCAGCACCAGACGCTCATTACCATTTTGCACCTCAAGAGCATCGTACACGCGCGGTACGGCATCCTGAGGGAATTCGACGTCAACTACtc    >  SRR4302543.6831006/1‑92 (MQ=60)
                                                                                           ACCTCCAGCACCAGACGCTCATTACCATTTTGCACCTCAAGAGCATCGTACACGCGCGGTACGGCATCCTGAGGGAATTCGACGTCAACTACGG    <  SRR4302543.2121844/94‑1 (MQ=60)
                                                                                           ACCTCCAGCACCAGACGCTCATTACCATTTTGCACCTCAAGAGCATCGTACACGCGCGGTACGGCATCCTGAGGGAATTCGACGTCAACTACGG    >  SRR4302543.6823611/1‑94 (MQ=60)
                                                                                            CCTCCAGCACCAGACGCTCATTACCATTTTGCACCTCAAGAGCATCGTACACGCGCGGTACGGCATCCTGAGGGAATTCGACGTCAACTACGGC   <  SRR4302543.249984/94‑1 (MQ=60)
                                                                                             CTCCAGCACCAGACGCTCATTACCATTTTGCACCTCAAGAGCATCGTACACGCGCGGTACGGCATCCTGAGGGAATTCGACGTCAACTACGGCG  <  SRR4302543.1728205/94‑1 (MQ=60)
                                                                                             |                                                                                             
TTCGAGGTCTTTTACATCCAGACCGCGACGCAGACCGTCGGAGGAACCCATTGCGATGGTACGTACGATACCGCCGCCGAGCTGCTGCTGAACTTCCAGCACCAGACGCTCATTACCATTTTGCACCTCAAGAGCATCGTACACGCGCGGTACGGCATCCTGAGGGAATTCGACGTCAACTACGGCG  >  NC_000913/3914785‑3914971

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: