Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I1 R1 1696 279.3 15874187 97.8% 15524954 93.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,917,055 T→C Q144R (CAG→CGG)  atpA ← membrane‑bound ATP synthase, F1 sector, alpha‑subunit

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,917,0550TC99.5% 1211.4 / ‑5.3 387Q144R (CAG→CGG) atpAmembrane‑bound ATP synthase, F1 sector, alpha‑subunit
Reads supporting (aligned to +/- strand):  ref base T (1/1);  new base C (177/208);  total (178/209)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 6.86e-01

Only 100 of 405 total aligned reads displayed.

CCTGTCTGACGGTCACCGATGATCAATTCACGCTGACCACGACCGATTGGGATCATGGAGTCAACGGCTTTATAACCGGTCTGTACCGGCTGATCTACGGACTGACGTTCGATAACGCCCGGAGCGATTGCTTCTACAGCAGAGAAGCCGTCGTGATCCAGCGGACCTTTACCGTCGATT  >  NC_000913/3916965‑3917144
                                                                                          |                                                                                         
 cTGTCTGACGGTCACCGATGATCAATTCACGCTGACCACGACCGATTGGGATCATGGAGTCAACGGCTTTATAACCGGTCTGTACCGGCCGAt                                                                                        >  1:6578357/1‑93 (MQ=255)
 cTGTCTGACGGTCACCGATGATCAATTCACGCTGACCACGACCGATTGGGATCATGGAGTCAACGGCTTTATAACCGGTCTGTACCGGCCGAt                                                                                        >  1:5858761/1‑93 (MQ=255)
  tGTCTGACGGTCACCGATGATCAATTCACGCTGACCACGACCGATTGGGATCATGGAGTCAACGGCTTTATAACCGGTCTGTACCGGCCGATc                                                                                       >  1:7158328/1‑93 (MQ=255)
  tGTCTGACGGTCACCGATGATCAATTCACGCTGACCACGACCGATTGGGATCATGGAGTCAACGGCTTTATAACCGGTCTGTACCGGCCGATc                                                                                       >  1:480603/1‑93 (MQ=255)
   gTCTGACGGTCACCGATGATCAATTCACGCTGACCACGACCGATTGGGATCATGGAGTCAACGGCTTTATAACCGGTCTGTACCGGCCGATCt                                                                                      >  1:6192996/1‑93 (MQ=255)
    tCTGCCGGTCACCGATGATCAATTCACCGTGGCCACGACCGATTGGGATCATGAAGTCAACGGCTTTATACCCGGTCTGTACCGGCCGATCTa                                                                                     <  2:6822155/93‑1 (MQ=255)
    tCTGACGGTCACCGATGATCAATTCACGCTGACCACGACCGATTGGGATCATGGAGTCAACGGCTTTATAACCGGTCTGTACCGGCCGATCTa                                                                                     <  1:7573020/93‑1 (MQ=255)
     cTGACGGTCACCGATGATCAATTCACGCTGACCACGACCGATTGGGATCATGGAGTCAACGGCTTTATAACCGGTCTGTACCGGCCGATCTAc                                                                                    <  2:848155/93‑1 (MQ=255)
      tGACGGTCACCGATGATCAATTCACGCTGACCACGACCGATTGGGATCATGGAGTCAACGGCTTTTTAACCGGTCTGTACCGGCCGATCTACg                                                                                   >  1:5277084/1‑93 (MQ=255)
      tGACGGTCACCGATGATCAATTCACGCTGACCACGACCGATTGGGATCATGGAGTCAACGGCTTTATAACCGGTCTGTACCGGCCGATCTACg                                                                                   >  1:259217/1‑93 (MQ=255)
      tGACGGTCACCGATGATCAATTCACGCTGACCACGACCGATTGGGATCATGGAGTCAACGGCTTTATAACCGGTCTGTACCGGCCGATCTACg                                                                                   >  1:4356281/1‑93 (MQ=255)
      tGACAGTCACCGATGATCAATTCACGCTGACCACGACCGATTGGGATCATGGAGTCAACAGCTTTATAACCGATCTGTACCGGCCGATCTACg                                                                                   >  2:7891826/1‑93 (MQ=255)
        aCGGTCACCGATGATCAATTCACGCTGACCACGACCGATTGGGATCATGGAGTCAACGGCTTTATAACCGGTCTGTACCGGCCGATCTACGGa                                                                                 <  1:1041005/93‑1 (MQ=255)
            gcACCGATGATCAATTCACGCTGACCACGACCGATTGGGATCATGGAGTCAACGGCTTTATAACCGGTCTGTACCGGCCGATCTACGGACTGa                                                                             <  1:5767114/92‑1 (MQ=255)
             cACCGATGATCAATTCACGCTGACCACGACCGATTGGGATCATGGAGTCAACGGCTTTATAACCGGTCTGTACCGGCCGATCTACGGACTGAc                                                                            >  2:6672997/1‑93 (MQ=255)
                cGATGATCAATTCACGCTGACCACGACCGATTGGGATCATGGAGTCAACGGCTTTATAACCGGTCTGTACCGGCCGATCTACGGACTGACGtt                                                                         <  2:7589851/93‑1 (MQ=255)
                cGATGATCAATTCACGCTGACCACGACCGATTGGGATCATGGAGTCAACGGCTTTATAACCGGTCTGTACCGGCCGATCTACGGACTGACGtt                                                                         >  2:1732595/1‑93 (MQ=255)
                 gatgatCAATTCACGCTGACCACGACCGATTGGGATCCTGGAGTCAACGGCTTTATAACCGGTCTGTACCGGCCGCTCTACGGCCTGACGttg                                                                        >  1:5928340/1‑92 (MQ=255)
                 gatgatCAATTCACGCTGACCACGACCGATTGGGATCATGGAGTCAACGGCTTTATAACCGGTCTGTACCGGCCGATCTACGGACTGACGTTc                                                                        <  2:1483826/93‑1 (MQ=255)
                 gatgatCAATTCACGCTGACCACGACCGATTGGGATCATGGAGTCAACGGCTTTATAACCGGTCTGTACCGGCCGATCTACGGACTGACGTTc                                                                        <  1:3464002/93‑1 (MQ=255)
                    gatCAATTCACGCTGACCACGACCGATTGGGATCATGGAGTCAACGGCTTTATAACCGGTCTGTACCGGCCGATCTACGGACTGACGTTCGAt                                                                     <  2:3515417/93‑1 (MQ=255)
                    gatCAATTCACGCTGACCACGACCGATTGGGATCATGGAGTCAACGGCTTTATAACCGGTCTGTACCGGCCGATCTACGGACTGACGTTCGAt                                                                     <  2:2657476/93‑1 (MQ=255)
                      tCAATTCACGCTGACCACGACCGATTGGGATCATGGAGTCAACGGCTTTATAACCGGTCTGTACCGGCCGATCTACGGACTGACGTTCGATaa                                                                   >  2:4278150/1‑93 (MQ=255)
                      tCAATTCACGCTGACCACGACCGATTGGGATCATGGAGTCAACGGCTTTATAACCGGTCTGTACCGGCCGATCTACGGACTGACGTTCGATaa                                                                   <  1:1990441/93‑1 (MQ=255)
                       cAATTCACGCTGACCACGACCGATTGGGATCATGGAGTCAACGTCTTTATATCCGGTCTGTACCGGCCGATCTACGGACTGACGTTCGATAAc                                                                  <  2:7416892/93‑1 (MQ=255)
                       cAATTCACGCTGACCACGACCGATTGGGATCATGGAGTCAACGGCTTTATAACCGGTCTGTACCGGCCGATCTACGGACTGACGTTCGATAAc                                                                  <  1:3891186/93‑1 (MQ=255)
                       cAATTCACGCTGACCACGACCGATTGGGATCATGGAGTCAACGGCTTTATAACCGGTCTGTACCGGCCGATCTACGGACTGACGTTCGATAAc                                                                  <  1:6543332/93‑1 (MQ=255)
                        aaTTCACGCTGACCACGACCGATTGGGATCATGGAGTCAACGGCTTTATAACCGGTCTGTACCGGCCGATCTACGGACTGACGTTCGATAACg                                                                 >  2:5169223/1‑93 (MQ=255)
                        aaTTCACGCTGACCACGACCGATTGGGATCATGGAGTCAACGGCTTTATAACCGGTCTGTACCGGCCGATCTACGGACTGACGTTCGATAACg                                                                 >  1:3294915/1‑93 (MQ=255)
                        aaTTCACGCTGACCACGACCGATTGGGATCATGGAGTCAACGGCTTTATAACCGGTCTGTACCGGCCGATCTACGGACTGACGTTCGATAACg                                                                 >  1:3211485/1‑93 (MQ=255)
                        aaTTCACGCTGACCACGACCGATTGGGATCATGGAGTCAACGGCTTTATAACCGGTCTGTACCGGCCGATCTACGGACTGACGTTCGATAACg                                                                 >  1:2428921/1‑93 (MQ=255)
                          ttCACGCTGACCACGACCGATTGGGATCATGGAGTCAACGGCTTTATAACCGGTCTGTACCGGCCGATCTACGGACTGACGTTCGATAACGcc                                                               >  2:4126109/1‑93 (MQ=255)
                          ttCACGCTGACCACGACCGATTGGGATCATGGAGTCAACGGCTTTATAACCGGTCTGTACCGGCCGATCTACGGACTGACGTTCGATAACGcc                                                               >  2:1601876/1‑93 (MQ=255)
                              cGCTGACCACGACCGATTGGGATCATGGAGTCAACGGCTTTATAACCGGTCTGTACCGGCCGATCTACGGACTGACGTTCGATAACGCCCGGa                                                           >  2:2798554/1‑93 (MQ=255)
                               gCTGACCACGACCGATTGGGATCATGGAGTCAACGGCTTTATAACCGGTCTGTACCGGCCGATCTACGGACTGACGTTCGATAACGCCCGGAg                                                          >  1:2963706/1‑93 (MQ=255)
                                cTGACCACGACCGATTGGGATCATGGAGTCAACGGCTTTATAACCGGTCTGTACCGGCCGATCTACGGACTGACGTTCGATAACGCCCGGAGc                                                         <  1:6122382/93‑1 (MQ=255)
                                cTGACCACGACCGATTGGGATCATGGAGTCAACGGCTTTATAACCGGTCTGTACCGGCCCATCTACGGACTGACGTTCGATAACGCCCGGAGc                                                         <  2:2113145/93‑1 (MQ=255)
                                 tGACCACGACCGTTTGGGATCATGGAGAAAACGGCTTTATACCCGGTCTGTACCGGCCGCTCTCCGGACTGACGTTCGATAACGCCCGGAGCg                                                        <  2:5706220/93‑1 (MQ=255)
                                   aCCACGACCGATTGGGATCATGGAGTCAACGGCTTTATAACCGGTCTGTACCGGCCGATCTACGGACTGACGTTCGATAACGCCCGGAGCGAt                                                      <  2:2417235/93‑1 (MQ=255)
                                   aCCACGACCGATTGGGATCATGGAGTCAACGGCTTTATAACCGGTCTGTACCGGCCGATCTACGGACTGACGTTCGATAACGCCCGGAGCGAt                                                      <  1:773788/93‑1 (MQ=255)
                                    ccACGACCGATTGGGATCATGGAGTCAACGGCTTTATAACCGGTCTGTACCGGCTGATCTACGGACTGACGTTCGATAACGCCCGGAGCGAtt                                                     >  2:7002310/1‑93 (MQ=255)
                                       cGACCGATTGGGATCATGGAGTCAACGGCTTTATAACCGGTCTGTACCGGCCGATCTACGGACTGACGTTCGATAACGCCCGGAGCGATTGCt                                                  <  1:7923101/93‑1 (MQ=255)
                                        gACCGATTGGGATCATGGAGTCAACGGCTTTATAACCGGTCTGTACCGGCCGATCTACGGACTGACGTTCGATAACGCCCGGAGCGATTGCtt                                                 >  2:2982394/1‑93 (MQ=255)
                                        gACCGATTGGGATCATGGAGTCAACGGCTTTATAACCGGTCTGTACCGGCCGATCTACGGACTGACGTTCGATAACGCCCGGAGCGATTGCtt                                                 >  1:11982/1‑93 (MQ=255)
                                        gACCGATTGGGATCATGGAGTCAACGGCTTTATAACCGGTCTGTACCGGCCGATCTACGGACTGACGTTCGATAACGCCCGGAGCGATTGCtt                                                 <  1:1534037/93‑1 (MQ=255)
                                        gACCGATTGGGATCATGGAGTCAACAGCTTTATAACCGGTCTGTACCGGCCGATCTACGGACTGACGTTCGATAACGCCCGGAGCGATTGCtt                                                 >  2:1331821/1‑93 (MQ=255)
                                         aCCGATTGGGATCATGGAGTCAACGGCTTTATAACCGGTCTGTACCGGCCGATCTACGGACTGACGTTCGATAACGCCCGGAGCGATTGCTTc                                                >  1:3719147/1‑93 (MQ=255)
                                         aCCGATTGGGATCATGGAGTCAACGGCTTTATAACCGGTCTGTACCGGCCGATCTACGGACTGACGTTCGATAACGCCCGGAGCGATTGCTTc                                                >  1:920491/1‑93 (MQ=255)
                                           cGATTGGGATCATGGAGTCAACGGCTTTATAACCGGTCTGTACCGGCCGATCTACGGACTGACGTTCGATAACGCCCGGAGCGATTGCTTCTa                                              >  2:3733381/1‑93 (MQ=255)
                                           cGATTGGGATCATGGAGTCAACGGCTTTATAACCGGTCTGTACCGGCCGATCTACGGACTGACGTTCGATAACGCCCGGAGCGATTGCTTCTa                                              >  2:3218931/1‑93 (MQ=255)
                                           cGATTGGGATCATGGAGTCAACGGCTTTATAACCGGTCTGTACCGGCCGATCTACGGACTGACGTTCGATAACGCCCGGAGCGATTGCTTCTa                                              <  1:3573547/93‑1 (MQ=255)
                                             aTTGGGATCATGGAGTCAACGGCTTTATAACCGGTCTGTACCGGCCGATCTACGGACTGACGTTCGATAACGCCCGGAGCGATTGCTTCTAca                                            >  1:2206865/1‑93 (MQ=255)
                                             aTTGGGATCATGGAGTCAACGGCTTTATAACCGGTCTGTACCGGCCGATCTACGGACTGACGTTCGATAACGCCCGGAGCGATTGCTTCTAca                                            >  2:6395060/1‑93 (MQ=255)
                                              ttGGGATCATGGAGTCAACGGCTTTATAACCGGTCTGTACCGGCCGATCTACGGACTGACGTTCGATAACGCCCGGAGCGATTGCTTCTAcag                                           >  2:4447994/1‑93 (MQ=255)
                                              ttGGGATCATGGAGTCAACGGCTTTATAACCGGTCTGTACCGGCCGATCTACGGACTGACGTTCGATAACGCCCGGAGCGATTGCTTCTAcag                                           <  1:5096636/93‑1 (MQ=255)
                                                gggATCATGGAGTCAACGGCTTTATAACCGGTCTGTACCGGCCGATCTACGGACTGACGTTCGATAACGCCCGGAGCGATTGCTTCTAcagca                                         >  1:6952691/1‑93 (MQ=255)
                                                 ggATCATGGAGTCAACGGCTTTATAACCGGTCTGTACCGGCCGATCTACGGACTGACGTTCGATAACGCCCGGAGCGATTGCTTCTAcagcag                                        <  1:5625318/93‑1 (MQ=255)
                                                  gATCATGGAGTCAACGGCTTTATAACCGGTCTGTACCGGCCGATCTACGGACTGACGTTCGATAACGCCCGGAGCGATTGCTTCTACAGCaga                                       <  2:5550237/93‑1 (MQ=255)
                                                    tCATGGAGTCAACGGCTTTATAACCGGTCTGTACCGGCCGATCTACGGACTGACGTTCGATAACGCCCGGAGCGATTGCTTCTACAGCAgaga                                     >  2:4542209/1‑93 (MQ=255)
                                                     cATGGAGTCAACGGCTTTATAACCGGTCTGTACCGGCCGATCTACGGACTGACGTTCGATAACGCCCGGAGCGATTGCTTCTACAGCAGAGaa                                    <  2:3876141/93‑1 (MQ=255)
                                                     cATGGAGTCAACGGCTTTATAACCGGTCTGTACCGGCCGATCTACGGACTGACGTTCGATAACGCCCGGAGCGATTGCTTCTACAGCAGAGaa                                    <  1:5151303/93‑1 (MQ=255)
                                                      aTGGAGTCAACGGCTTTATAACCGGTCTGTACCGGCCGATCTACGGACTGACGTTCGATAACGCCCGGAGCGATTGCTTCTACAGCAGAGAAg                                   >  1:2880476/1‑93 (MQ=255)
                                                      aTGGAGTCAACGGCTTTATAACCGGTCTGTACCGGCCGATCTACGGACTGACGTTCGATAACGCCCGGAGCGATTGCTTCTACAGCAGAGAAg                                   >  1:1844045/1‑93 (MQ=255)
                                                       tGGAGTCAACGGCTTTATAACCGGTCTGTACCGGCCGATCTACGGACTGACGTTCGATAACGCCCGGAGCGATTGCTTCTACAGCAGAGAAGc                                  <  2:4734017/93‑1 (MQ=255)
                                                          aGTCAACGGCTTTATAACCGGTCTGTACCGGCCGATCTACGGACTGACGTTCGATAACGCCCGGAGCGATTGCTTCTACAGCAGAGAAGCcgt                               <  2:6166991/93‑1 (MQ=255)
                                                           gTCAACGGCTTTATAACCGGTCTGTACCGGCCGATCTACGGACTGACGTTCGATAACGCCCGGAGCGATTGCTTCTACAGCAGAGAAGCcgtc                              <  2:219836/93‑1 (MQ=255)
                                                            tCAACGGCTTTATAACCGGTCTGTACCGGCCGATCTACGGACTGACGTTCGATAACGCCCGGAGCGATTGCTTCTACAGCAGAGAAGCcgtcg                             >  2:1845519/1‑93 (MQ=255)
                                                             cAACGGCTTTATAACCGGTCTGTACCGGCCGATCTACGGACTGACGTTCGATAACGCCCGGAGCGATTGCTTCTACAGCAGAGAAGCcgtcgt                            <  1:3997616/93‑1 (MQ=255)
                                                             cAACGGCTTTATAACCGGTCTGTACCGGCCGATCTACGGACTGACGTTCGATAACGCCCGGAGCGATTGCTTCTACAGCAGAGAAGCcgtcgt                            <  1:4529089/93‑1 (MQ=255)
                                                              aaCGGCTTTATAACCGGTCTGTACCGGCCGATCTACGGACTGACGTTCGATAACGCCCGGAGCGATTGCTTCTACAGCAGAGAAGCCGTCGTg                           >  2:7182342/1‑93 (MQ=255)
                                                               aCGGCTTTATAACCGGTCTGTACCGGCCGATCTACGGACTGACGTTCGATAACGCCCGGAGCGATTGCTTCTACAGCAGAGAAGCCGTCGTGa                          >  1:7508886/1‑93 (MQ=255)
                                                               aCGGCTTTATAACCGGTCTGTACCGGCCGATCTACGGACTGACGTTCGATAACGCCCGGAGCGATTGCTTCTACAGCAGAGAAGCCGTCGTGa                          >  2:6884866/1‑93 (MQ=255)
                                                                cGGCTTTATAACCGGTCTGTACCGGCCGATCTACGGACTGACGTTCGATAACGCCCGGAGCGATTGCTTCTACAGCAGAGAAGCCGTCGTGAt                         >  2:5914044/1‑93 (MQ=255)
                                                                 ggCTTTATAACCGGTCTGTACCGGCCGATCTACGGACTGACGTTCGATAACGCCCGGAGCGATTGCTTCTACAGCAGAGAAGCCGTCGTGATc                        >  2:7686087/1‑93 (MQ=255)
                                                                 ggCTTTATAACCGGTCTGTACCGGCCGATCTACGGACTGACGTTCGATAACGCCCGGAGCGATTGCTTCTACAGCAGAGAAGCCGTCGTGATc                        >  1:6075434/1‑93 (MQ=255)
                                                                 ggCTTTATAACCGGTCTGTACCGGCCGATCTACGGACTGACGTTCGATAACGCCCGGAGCGATTGCTTCGACAGCAGAGAAGCCGTCGGGATc                        >  2:5412737/1‑93 (MQ=255)
                                                                 cgCTTTATAACCGGTCTGTACCGGCCGATCTACGGACTGACGTTCGATAACGCCCGGAGCGATTGCTTCTACAGCAGAGAAGCCGTCGTGATc                        <  1:5409082/92‑1 (MQ=255)
                                                                   cTTTATAACCGGTCTGTACCGGCCGATCTACGGACTGACGTTCGATAACGCCCGGAGCGATTGCTTCTACAGCAGAGAAGCCGTCGTGATCCa                      <  1:4917130/93‑1 (MQ=255)
                                                                    tttATAACCGGTCTGTACCGGCCGATCTACGGACTGACGTTCGATAACGCCCGGAGCGATTGCTTCTACAGCAGAGAAGCCGTCGTGATCCAg                     >  2:3431709/1‑93 (MQ=255)
                                                                     ttATAACCGGTCTGTACCGGCCGATCTACGGACTGACGTTCGATAACGCCCGGAGCGATTGCTTCTACAGCAGAGAAGCCGTCGTGATCCAGc                    >  2:7793555/1‑93 (MQ=255)
                                                                     ttATAACCGGTCTGTACCGGCCGATCTACGGACTGACGTTCGATAACGCCCGGAGCGATTGCTTCTACAGCAGAGAAGCCGTCGTGATCCAGc                    >  1:7781754/1‑93 (MQ=255)
                                                                      tataACCGGTCTGTACCGGCCGATCTACGGACTGACGTTCGATAACGCCCGGAGCGATTGCTTCTACAGCAGAGAAGCCGTCGTGATCCAGCg                   >  2:6094261/1‑93 (MQ=255)
                                                                      tataACCGGTCTGTACCGGCCGATCTACGGACTGACGTTCGATAACGCCCGGAGCGATTGCTTCTACAGCAGAGAAGCCGTCGTGATCCAGCg                   <  1:5685953/93‑1 (MQ=255)
                                                                        taACCGGTCTGTACCGGCCGATCTACGGACTGACGTTCGATAACGCCCGGAGCGATTGCTTCTACAGCAGAGAAGCCGTCGTGATCCAGCGGa                 <  2:1053519/93‑1 (MQ=255)
                                                                         aaCCGGTCTGTACCGGCCGATCTACGGACTGACGTTCGATAACGCCCGGAGCGATTGCTTCTACAGCAGAGAAGCCGTCGTGATCCAGCGGAc                >  2:116356/1‑93 (MQ=255)
                                                                          aCCGGTCTGTACCGGCCGATCTACGGACTGACGTTCGATAACGCCCGGAGCGATTGCTTCTACAGCAGAGAAGCCGTCGTGATCCAGCGGAcc               >  2:4814447/1‑93 (MQ=255)
                                                                            cGGTCTGTACCGGCCGATCTACGGACTGACGTTCGATAACGCCCGGAGCGATTGCTTCTACAGCAGAGAAGCCGTCGTGATCCAGCGGACCtt             >  2:4955817/1‑93 (MQ=255)
                                                                            cGGTCTGTACCGGCCGATCTACGGACTGACGTTCGATAACGCCCGGAGCGATTGCTTCTACAGCAGAGAAGCCGTCGTGATCCAGCGGACCtt             <  2:3153602/93‑1 (MQ=255)
                                                                            cGGTCTGTACCGGCCGATCTACGGACTGACGTTCGATAACGCCCGGAGCGATTGCTTCTACAGCAGAGAAGCCGTCGTGATCCAGCGGACCtt             >  2:2357915/1‑93 (MQ=255)
                                                                            cGGTCCGTACCGGCCGATCTACGGACTGACGTTCGATAACGCCCGGAGCGATTGCTTCTACAGCAGAGAAGCCGTCGTGATCCAGCGGACCtt             <  2:6257201/93‑1 (MQ=255)
                                                                              gTCTGTACCGGCCGATCTACGGACTGACGTTCGATAACGCCCGGAGCGATTGCTTCTACAGCAGAGAAGCCGTCGTGATCCAGCGGACCTTTa           >  1:6380122/1‑93 (MQ=255)
                                                                              gTCTGTACCGGCCGATCTACGGACTGACGTTCGATAACGCCCGGAGCGATTGCTTCTACAGCAGAGAAGCCGTCGTGATCCAGCGGACCTTTa           <  2:2856950/93‑1 (MQ=255)
                                                                               tCTGTACCGGCCGATCTACGGACTGACGTTCGATAACGCCCGGAGCGATTGCTTCTACAGCAGAGAAGCCGTCGTGATCCAGCGGACCTTTAc          <  1:230190/93‑1 (MQ=255)
                                                                                 tGTACCGGCCGATCTACGGACTGACGTTCGATAACGCCCGGAGCGATTGCTTCTACAGCAGAGAAGCCGTCGTGATCCAGCGGACCTTTACCg        >  2:7131264/1‑93 (MQ=255)
                                                                                  gTACCGGCCGATCTACGGACTGACGTTCGATAACGCCCGGAGCGATTGCTTCTACAGCAGAGAAGCCGTCGTGATCCAGCGGACCTTTACCGt       >  1:7325452/1‑93 (MQ=255)
                                                                                   tACCGGCCGATCTACGGACTGACGTTCGATAACGCCCGGAGCGATTGCTTCTACAGCAGAGAAGCCGTCGTGATCCAGCGGACCTTTACCGTc      >  1:6691078/1‑93 (MQ=255)
                                                                                   tACCGGCCGATCTACGGACTGACGTTCGATAACGCCCGGAGCGATTGCTTCTACAGCAGAGAAGCCGTCGTGATCCAGCGGACCTTTACCGTc      >  1:5015238/1‑93 (MQ=255)
                                                                                   tACCGGCCGATCTACGGACTGACGTTCGATAACGCCCGGAGCGATTGCTTCTACAGCAGAGAAGCCGTCGTGATCCAGCGGACCTTTACCGTc      <  2:201183/93‑1 (MQ=255)
                                                                                    aCCGGCCGATCTACGGACTGACGTTCGATAACGCCCGGAGCGATTGCTTCTACAGCAGAGAAGCCGTCGTGATCCAGCGGACCTTTACCGTCg     <  1:2349282/93‑1 (MQ=255)
                                                                                    aCCGGCCGATCTACGGACTGACGTTCGATAACGCCCGGAGCGATTGCTTCTACAGCAGAGAAGCCGTCGTGATCCAGCGGACCTTTACCGTCg     <  1:1647323/93‑1 (MQ=255)
                                                                                          |                                                                                         
CCTGTCTGACGGTCACCGATGATCAATTCACGCTGACCACGACCGATTGGGATCATGGAGTCAACGGCTTTATAACCGGTCTGTACCGGCTGATCTACGGACTGACGTTCGATAACGCCCGGAGCGATTGCTTCTACAGCAGAGAAGCCGTCGTGATCCAGCGGACCTTTACCGTCGATT  >  NC_000913/3916965‑3917144

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

BRESEQ :: bam2aln output Only 200 of 219 total aligned reads displayed.
TTACCTGTCTGACGGTCACCGATGATCAATTCACGCTGACCACGACCGATTGGGATCATGGAGTCAACGGCTTTATAACCGGTCTGTACCGGCTGATCTACGGACTGACGTTCGATAACGCCCGGAGCGATTGCTTCTACAGCAGAGAAGCCGTCGTGATCCAGCGGACCTTTACCGTCGATTGGTG  >  NC_000913/3916962‑3917148
                                                                                             |                                                                                             
TTACCTGTCTGACGGTCACCGATGATCAATTCACGCTGACCACGACCGATTGGGATCATGGAGTCAACGGCTTTATAACCGGTCTGTACCGGCC                                                                                               <  SRR4302543.4268664/94‑1 (MQ=60)
 TACCTGTCTGACGGTCACCGATGATCAATTCACGCTGACCACGACCGATTGGGATCATGGAGTCAACGGCTTTATAACCGGTCTGTACCGGCCG                                                                                              >  SRR4302543.3517340/1‑94 (MQ=60)
 TACCTGTCTGACGGTCACCGATGATCAATTCACGCTGACCACGACCGATTGGGATCATGGAGTCAACGGCTTTATAACCGGTCTGTACCGGCCG                                                                                              <  SRR4302543.4806483/94‑1 (MQ=60)
 TACCTGTCTGACGGTCACCGATGATCAATTCACGCTGACCACGACCGATTGGGATCATGGAGTCAACGGCTTTATAACCGGTCTGTACCGGCCG                                                                                              >  SRR4302543.5328668/1‑94 (MQ=60)
 TACCTGTCTGACGGTCACCGATGATCAATTCACGCTGACCACGACCGATTGGGATCATGGAGTCAACGGCTTTATAACCGGTCTGTACCGGCCG                                                                                              >  SRR4302543.7828028/1‑94 (MQ=60)
 TACCTGTCCGACGGTCACCGATGATCAATTCACGCTGACCACGACCGATTGGGATCATGGAGTCAACGGCTTTATAACCGGTCTGTACCGGCCG                                                                                              <  SRR4302543.5788163/94‑1 (MQ=60)
  ACCTGTCTGACGGTCACCGATGATCAATTCACGCTGACCACGACCGATTGGGATCATGGAGTCAACGGCTTTATAACCGGTCTGTACCGGCCGA                                                                                             >  SRR4302543.1070354/1‑94 (MQ=60)
  ACCTGTCTGACGGTCACCGATGATCAATTCACGCTGACCACGACCGATTGGGATCATGGAGTCAACGGCTTTATAACCGGTCTGTACCGGCCGA                                                                                             >  SRR4302543.5319456/1‑94 (MQ=60)
   CCTGTCTGACGGTCACCGATGATCAATTCACGCTGACCACGACCGATTGGGATCATGGAGTCAACGGCTTTATAACCGGTCTGTACCGGCCGAT                                                                                            >  SRR4302543.3154602/1‑94 (MQ=60)
   CCTGTCTGACGGTCACCGATGATCAATTCACGCTGACCACGACCGATTGGGATCATGGAGTCAACGGCTTTATAACCGGTCTGTACCGGCCGAT                                                                                            >  SRR4302543.5912092/1‑94 (MQ=60)
   CCTGTCTGACGGTCACCGATGATCAATTCACGCTGACCACGACCGATTGGGATCATGGAGTCAACGGCTTTATAACCGGTCTGTACCGGCCGAT                                                                                            <  SRR4302543.5630819/94‑1 (MQ=60)
    CTGTCTGACGGTCACCGATGATCAATTCACGCTGACCACGACCGATTGGGATCATGGAGTCAACGGCTTTATAACCGGTCTGTACCGGCCGATC                                                                                           <  SRR4302543.3529804/94‑1 (MQ=60)
    CTGTCTGACGGTCACCGATGATCAATTCACGCTGACCACGACCGATTGGGATCATGGAGTCAACGGCTTTATAACCGGTCTGTACCGGCCGATC                                                                                           >  SRR4302543.7227890/1‑94 (MQ=60)
    CTGTCTGACGGTCACCGATGATCAATTCACGCTGACCACGACCGATTGGGATCATGGAGTCAACGGCTTTATAACCGGTCTGTACCGGCCGATC                                                                                           >  SRR4302543.485046/1‑94 (MQ=60)
    CTGTCTGACGGTCACCGATGATCAATTCACGCTGACCACGACCGATTGGGATCATGGAGTCAACGGCTTTATAACCGGTCTGTACCGGCCGATC                                                                                           <  SRR4302543.1769668/94‑1 (MQ=60)
     TGTCTGACGGTCACCGATGATCAATTCACGCTGACCACGACCGATTGGGATCATGGAGTCAACGGCTTTATAACCGGTCTGTACCGGCCGATCT                                                                                          >  SRR4302543.6251505/1‑94 (MQ=60)
     TGTCTGACGGTCACCGATGATCAATTCACGCTGACCACGACCGATTGGGATCATGGAGTCAACGGCTTTATAACCGGTCTGTACCGGCCGATCT                                                                                          <  SRR4302543.6219765/94‑1 (MQ=60)
     TGTCTGACGGTCACCGATGATCAATTCACGCTGACCACGACCGATTGGGATCATGGAGTCAACGGCTTTATAACCGGTCTGTACCGGCCGATCT                                                                                          <  SRR4302543.5201835/94‑1 (MQ=60)
      GTCTGACGGTCACCGATGATCAATTCACGCTGACCACGACCGATTGGGATCATGGAGTCAACGGCTTTATAACCGGTCTGTACCGGCCGATCTA                                                                                         <  SRR4302543.3971123/94‑1 (MQ=60)
       TCTGACGGTCACCGATGATCAATTCACGCTGACCACGACCGATTGGGATCATGGAGTCAACGGCTTTATAACCGGTCTGTACCGGCCGATCTAC                                                                                        <  SRR4302543.1566768/94‑1 (MQ=60)
       TCTGACGGTCACCGATGATCAATTCACGCTGACCACGACCGATTGGGATCATGGAGTCAACGGCTTTATAACCGGTCTGTACCGGCCGATCTAC                                                                                        <  SRR4302543.4197681/94‑1 (MQ=60)
       TCTGACGGTCACCGATGATCAATTCACGCTGACCACGACCGATTGGGATCATGGAGTCAACGGCTTTATAACCGGTCTGTACCGGCCGATCTAC                                                                                        <  SRR4302543.3931405/94‑1 (MQ=60)
       TCTGACGGTCACCGATGATCAATTCACGCTGACCACGACCGATTGGGATCATGGAGTCAACGGCTTTATAACCGGTCTGTACCGGCCGATCTAC                                                                                        <  SRR4302543.7645054/94‑1 (MQ=60)
        CTGACGGTCACCGATGATCAATTCACGCTGACCACGACCGATTGGGATCATGGAGTCAACGGCTTTTTAACCGGTCTGTACCGGCCGATCTACG                                                                                       >  SRR4302543.5324694/1‑94 (MQ=60)
        CTGACGGTCACCGATGATCAATTCACGCTGACCACGACCGATTGGGATCATGGAGTCAACGGCTTTATAACCGGTCTGTACCGGCCGATCTACG                                                                                       >  SRR4302543.261482/1‑94 (MQ=60)
        CTGACGGTCACCGATGATCAATTCACGCTGACCACGACCGATTGGGATCATGGAGTCAACGGCTTTATAACCGGTCTGTACCGGCCGATCTACG                                                                                       <  SRR4302543.5948648/94‑1 (MQ=60)
        CTGACGGTCACCGATGATCAATTCACGCTGACCACGACCGATTGGGATCATGGAGTCAACGGCTTTATAACCGGTCTGTACCGGCCGATCTACG                                                                                       >  SRR4302543.4395751/1‑94 (MQ=60)
        CTGACGGTCACCGATGATCAATTCACGCTGACCACGACCGATTGGGATCATGGAGTCAACGGCTTTATAACCGGTCTGTACCGGCCGATCTACG                                                                                       >  SRR4302543.121483/1‑94 (MQ=60)
        CTGACGGTCACCGATGATCAATTCACGCTGACCACGACCGATTGGGATCATGGAGTCAACGGCTTTATAACCGGTCTGTACCGGCCGATCTACG                                                                                       <  SRR4302543.5696328/94‑1 (MQ=60)
          GACGGTCACCGATGATCAATTCACGCTGACCACGACCGATTGGGATCATGGAGTCAACGGCTTTATAACCGGTCTGTACCGGCCGATCTACGGA                                                                                     >  SRR4302543.3611999/1‑94 (MQ=60)
          GACGGTCACCGATGATCAATTCACGCTGACCACGACCGATTGGGATCATGGAGTCAACGGCTTTATAACCGGTCTGTACCGGCCGATCTACGGA                                                                                     <  SRR4302543.321061/94‑1 (MQ=60)
           ACGGTCACCGATGATCAATTCACGCTGACCACGACCGATTGGGATCATGGAGTCAACGGCTTTATAACCGGTCTGTACCGGCCGATCTACGGAC                                                                                    <  SRR4302543.1050278/94‑1 (MQ=60)
            CGGTCACCGATGATCAATTCACGCTGACCACGACCGATTGGGATCATGGAGTCAACGGCTTTATAACCGGTCTGTACCGGCCGATCTACGGACT                                                                                   <  SRR4302543.5732770/94‑1 (MQ=60)
             GGTCACCGATGATCAATTCACGCTGACCACGACCGATTGGGATCATGGAGTCAACGGCTTTATAACCGGTCTGTACCGGCCGATCTACGGACTG                                                                                  >  SRR4302543.5755817/1‑94 (MQ=60)
             GGTCACCGATGATCAATTCACGCTGACCACGACCGATTGGGATCATGGAGTCAACGGCTTTATAACCGGTCTGTACCGGCCGATCTACGGACTG                                                                                  <  SRR4302543.5091120/94‑1 (MQ=60)
              GTCACCGATGATCAATTCACGCTGACCACGACCGATTGGGATCATGGAGTCAACGGCTTTATAACCGGTCTGTACCGGCCGATCTACGGACTGA                                                                                 <  SRR4302543.1279876/94‑1 (MQ=60)
               TCACCGATGATCAATTCACGCTGACCACGACCGATTGGGATCATGGAGTCAACGGCTTTATAACCGGTCTGTACCGGCCGATCTACGGACTGAC                                                                                <  SRR4302543.2263840/94‑1 (MQ=60)
               GCACCGATGATCAATTCACGCTGACCACGACCGATTGGGATCATGGAGTCAACGGCTTTATAACCGGTCTGTACCGGCCGATCTACGGACTGAC                                                                                <  SRR4302543.5819643/94‑1 (MQ=60)
                  CCGATGATCAATTCACGCTGACCACGACCGATTGGGATCATGGAGTCAACGGCTTTATAACCGGTCTGTACCGGCCGATCTACGGACTGACGTT                                                                             >  SRR4302543.748441/1‑94 (MQ=60)
                  CCGATGATCAATTCACGCTGACCACGACCGATTGGGATCATGGAGTCAACGGCTTTATAACCGGTCTGTACCGGCCGATCTACGGACTGACGTT                                                                             >  SRR4302543.3752102/1‑94 (MQ=60)
                  CCGATGATCAATTCACGCTGACCACGACCGATTGGGATCATGGAGTCAACGGCTTTATAACCGGTCTGTACCGGCCGATCTACGGACTGAAGTT                                                                             >  SRR4302543.7763230/1‑94 (MQ=60)
                   CGATGATCAATTCACGCTGACCACGACCGATTGGGATCCTGGAGTCAACGGCTTTATAACCGGTCTGTACCGGCCGCTCTACGGCCTGACGTTG                                                                            >  SRR4302543.5982537/1‑94 (MQ=60)
                   CGATGATCAATTCACGCTGACCACGACCGATTGGGATCATGGAGTCAACGGCTTTATAACCGGTCTGTACCGGCCGATCTACGGACTGACGTTC                                                                            <  SRR4302543.4475113/94‑1 (MQ=60)
                   CGATGATCAATTCACGCTGACCACGACCGATTGGGATCATGGAGTCAACGGCTTTATAACCGGTCTGTACCGGCCGATCTACGGACTGACGTTC                                                                            >  SRR4302543.3665542/1‑94 (MQ=60)
                   CGATGATCAATTCACGCTGACCACGACCGATTGGGATCATGGAGTCAACGGCTTTATAACCGGTCTGTACCGGCCGATCTACGGACTGACGTTC                                                                            >  SRR4302543.859607/1‑94 (MQ=60)
                    GATGATCAATTCACGCTGACCACGACCGATTGGGATCATGGAGTCAACGGCTTTATAACCGGTCTGTACCGGCCGATCTACGGACTGACGTTCG                                                                           >  SRR4302543.1526322/1‑94 (MQ=60)
                    GATGATCAATTCACGCTGACCACGACCGATTGGGATCATGGAGTCAACGGCTTTATAACCGGTCTGTACCGGCCGATCTACGGACTGACGTTCG                                                                           >  SRR4302543.5154319/1‑94 (MQ=60)
                    GATGATCAATTCACGCTGACCACGACCGATTGGGATCATGGAGTCAACGGCTTTATAACCGGTCTGTACCGGCCGATCTACGGACTGACGTTCG                                                                           <  SRR4302543.3495026/94‑1 (MQ=60)
                    GATGATCAATTCACGCTGACCACGACCGATTGGGATCATGGAGTCAACGGCTTTATAACCGGTCTGTACCGGCCGATCTACGGACTGACGTTCG                                                                           >  SRR4302543.3294929/1‑94 (MQ=60)
                     ATGATCAATTCACGCTGACCACGACCGATTGGGATCATGGAGTCAACGGCTTTATAACCGGTCTGTACCGGCCGATCTACGGACTGACGTTCGA                                                                          >  SRR4302543.6692962/1‑94 (MQ=60)
                      TGATCAATTCGCGCTGACCACGACCGATTGGGATCATGGAGTCAACGGCTTTATAACCGGTCTGTACCGGCCGATCTACGGACTGACGTTCGAT                                                                         <  SRR4302543.2364661/94‑1 (MQ=60)
                      TGATCAATTCACGCTGACCACGACCGATTGGGATCATGGAGTCAACGGCTTTATAACCGGTCTGTACCGGCCGATCTACGGACTGACGTTCGAT                                                                         <  SRR4302543.2606795/94‑1 (MQ=60)
                       GATCAATTCACGCTGACCACGACCGATTGGGATCATGGAGTCAACGGCTTTATAACCGGTCTGTACCGGCCGATCTACGGACTGACGTTCGATA                                                                        <  SRR4302543.7442552/94‑1 (MQ=60)
                        ATCAATTCACGCTGACCACGACCGATTGGGATCATGGAGTCAACGGCTTTATAACCGGTCTGTACCGGCCGATCTACGGACTGACGTTCGATAA                                                                       >  SRR4302543.7903319/1‑94 (MQ=60)
                        ATCAATTCACGCTGACCACGACCGATTGGGATCATGGAGTCAACGGCTTTATAACCGGTCTGTACCGGCCGATCTACGGACTGACGTTCGATAA                                                                       >  SRR4302543.5881055/1‑94 (MQ=60)
                         TCAATTCACGCTGACCACGACCGATTGGGATCATGGAGTCAACGGCTTTATAACCGGTCTGTACCGGCCGATCTACGGACTGACGTTCGATAAC                                                                      <  SRR4302543.3923624/94‑1 (MQ=60)
                         TCAATTCACGCTGACCACGACCGATTGGGATCATGGAGTCAACGGCTTTATAACCGGTCTGTACCGGCCGATCTACGGACTGACGTTCGATAAC                                                                      <  SRR4302543.663140/94‑1 (MQ=60)
                         TCAATTCACGCTGACCACGACCGATTGGGATCATGGAGTCAACGGCTTTATAACCGGTCTGTACCGGCCGATCTACGGACTGACGTTCGATAAC                                                                      <  SRR4302543.6831952/94‑1 (MQ=60)
                         TCAATTCACGCTGACCACGACCGATTGGGATCATGGAGTCAACGGCTTTATAACCGGTCTGTACCGGCCGATCTACGGACTGACGTTCGATAAC                                                                      <  SRR4302543.7690573/94‑1 (MQ=60)
                         ACAATTCACGCGGACCACGACCGATTGGGATCATGGAGTCAACGGCTTTATAACCGGTCTGTACCGGCCGATCTACGGACTGACGTTCGATAAC                                                                      <  SRR4302543.5914547/94‑1 (MQ=60)
                          CAATTCACGCTGACCACGACCGATTGGGATCATGGAGTCAACGGCTTTATAACCGGTCTGTACCGGCCGATCTACGGACTGACGTTCGATAACG                                                                     >  SRR4302543.5409712/1‑94 (MQ=60)
                          CAATTCACGCTGACCACGACCGATTGGGATCATGGAGTCAACGGCTTTATAACCGGTCTGTACCGGCCGATCTACGGACTGACGTTCGATAACG                                                                     <  SRR4302543.5314024/94‑1 (MQ=60)
                          CAATTCACGCTGACCACGACCGATTGGGATCATGGAGTCAACGGCTTTATAACCGGTCTGTACCGGCCGATCTACGGACTGACGTTCGATAACG                                                                     >  SRR4302543.2450842/1‑94 (MQ=60)
                          CAATTCACGCTGACCACGACCGATTGGGATCATGGAGTCAACGGCTTTATAACCGGTCTGTACCGGCCGATCTACGGACTGACGTTCGATAACG                                                                     <  SRR4302543.6604917/94‑1 (MQ=60)
                          CAATTCACGCTGACCACGACCGATTGGGATCATGGAGTCAACGGCTTTATAACCGGTCTGTACCGGCCGATCTACGGACTGACGTTCGATAACG                                                                     >  SRR4302543.3240487/1‑94 (MQ=60)
                          CAATTCACGCTGACCACGACCGATTGGGATCATGGAGTCAACGGCTTTATAACCGGTCTGTACCGGCCGATCTACGGACTGACGTTCGATAACG                                                                     >  SRR4302543.3324641/1‑94 (MQ=60)
                          CAATTCACGCTGACCACGACCGATTGGGATCATGGAGTCAACGGCTTTATAACCGGTCTGTACCGGCCGATCTACGGACTGACGTTCGATAACG                                                                     <  SRR4302543.3265291/94‑1 (MQ=60)
                           AATTCACGCTGACCACGACCGATTGGGATCATGGAGTCAACGGCTTTATAACCGGTCTGTACCGGCCGATCTACGGACTGACGTTCGATAACGC                                                                    >  SRR4302543.5679957/1‑94 (MQ=60)
                           AATTCACGCTGACCACGACCGATTGGGATCATGGAGTCAACGGCTTTATAACCGGTCTGTACCGGCCGATCTACGGACTGACGTTCGATAACGC                                                                    >  SRR4302543.338686/1‑94 (MQ=60)
                             TTCACGCTGACCACGACCGATTGGGATCATGGAGTCAGCGGCTTGATAAACGGTCTGTACCGGCCGATCTACGGACTGACGTTCGATAACGCCC                                                                  <  SRR4302543.7003876/94‑1 (MQ=60)
                              TCACGCTGACCACGACCGATTGGGATCATGGAGTCAACGGCTTTATAACCGGTCTGTACCGGCCGATCTACGGACTGACGTTCGATAACGCCCG                                                                 <  SRR4302543.5549032/94‑1 (MQ=60)
                               CACGCTGACCACGACCGATTGGGATCATGGAGTCAACGGCTTTATAACCGGTCTGTACCGGCCGATCTACGGACTGACGTTCGATAACGCCCGG                                                                >  SRR4302543.7016644/1‑94 (MQ=60)
                                 CGCTGACCACGACCGATTGGGATCATGGAGTCAACGGCTTTATAACCGGTCTGTACCGGCCGATCTACGGACTGACGTTCGATAACGCCCGGAG                                                              >  SRR4302543.60564/1‑94 (MQ=60)
                                 CGCTGACCACGACCGATTGGGATCATGGAGTCAACGGCTTTATAACCGGTCTGTACCGGCCGATCTACGGACTGACGTTCGATAACGCCCGGAG                                                              >  SRR4302543.2990629/1‑94 (MQ=60)
                                 CGCTGACCACGACCGATTGGGATCATGGAGTCAACGGCTTTATAACCGGTCTGTACCGGCCGATCTACGGACTGACGTTCGATAACGCCCGGAG                                                              <  SRR4302543.6210843/94‑1 (MQ=60)
                                 CGCTGACCACGACCGATTGGGATCATGGAGTCAACGGCTTTATAACCGGTCTGTACCGGCCGATCTACGGACTGACGTTCGATAACGCCCGGAG                                                              >  SRR4302543.5566686/1‑94 (MQ=60)
                                  GCTGACCACGACCGATTGGGATCATGGAGTCAACGGCTTTATAACCGGTCTGTACCGGCCGATCTACGGACTGACGTTCGATAACGCCCGGAGC                                                             <  SRR4302543.6514892/94‑1 (MQ=60)
                                   CTGACCACGACCGATTGGGATCATGGAGTCAACGGCTTTATAACCGGTCTGTACCGGCCGATCTACGGACTGACGTTCGATAACGCCCGGAGCG                                                            <  SRR4302543.6180368/94‑1 (MQ=60)
                                   CTGACCACGACCGATTGGGATCATGGAGTCAACGGCTTTATAACCGGTCTGTACCGGCCGATCTACGGACTGACGTTCGATAACGCCCGGAGCG                                                            <  SRR4302543.926032/94‑1 (MQ=60)
                                    TGACCACGACCGATTGGGATCATGGAGTCAACGGCTTTATAACCGGTCTGTACCGGCCGATCTACGGACTGACGTTCGATAACGCCCGGAGCGA                                                           >  SRR4302543.3596932/1‑94 (MQ=60)
                                    TGACCACGACCGATTGGGATCATGGAGTCAACGGCTTTATAACCGGTCTGTACCGGCCGATCTACGGACTGACGTTCGATAACGCCCGGAGCGA                                                           <  SRR4302543.7643093/94‑1 (MQ=60)
                                    TGACCACGACCGATTGGGATCATGGAGTCAACGGCTTTATAACCGGTCTGGACCGGCCGATCTACGGACTGACGTGCGATAACGCCCGGAGCGA                                                           >  SRR4302543.3530697/1‑94 (MQ=60)
                                      ACCACGACCGATTGGGATCATGGAGTCAACGGCTTTATAACCGGTCTGTACCGGCCGATCTACGGACTGACGTTCGATAACGCCCGGAGCGATT                                                         >  SRR4302543.4181/1‑94 (MQ=60)
                                      ACCACGACCGATTGGGATCATGGAGTCAACGGCTTTATAACCGGTCTGTACCGGCCGATCTACGGACTGACGTTCGATAACGCCCGGAGCGATT                                                         <  SRR4302543.780586/94‑1 (MQ=60)
                                      ACCACGACCGATTGGGATCATGGAGTCAACGGCTTTATAACCGGTCTGTACCGGCCGATCTACGGACTGACATTCGATAACGCCCGGAGCGATT                                                         >  SRR4302543.4987378/1‑94 (MQ=60)
                                       CCACGACCGATTGGGATCATGGAGTCAACGGCTTTATAACCGGTCTGTACCGGCCGATCTACGGACTGACGTTCGATAACGCCCGGAGCGATTG                                                        <  SRR4302543.5801905/94‑1 (MQ=60)
                                        CACGACCGATTGGGATCATGGAGTCAACGGCTTTATAACCGGTCTGTACCGGCCGATCTACGGACTGACGTTCGATAACGCCCGGAGCGATTGC                                                       >  SRR4302543.2420413/1‑94 (MQ=60)
                                        CACGACCGATTGGGATCATGGAGTCAACGGCTTTATAACCGGTCTGTACCGGCCGATCTACGGACTGACGTTCGATAACGCCCGGAGCGATTGC                                                       <  SRR4302543.4934818/94‑1 (MQ=60)
                                          CGACCGATTGGGATCATGGAGTCAACGGCTTTATAACCGGTCTGTACCGGCCGATCTACGGACTGACGTTCGATAACGCCCGGAGCGATTGCTT                                                     >  SRR4302543.6631138/1‑94 (MQ=60)
                                          CGACCGATTGGGATCATGGAGTCAACGGCTTTATAACCGGTCTGTACCGGCCGATCTACGGACTGACGTTCGATAACGCCCGGAGCGATTGCTT                                                     >  SRR4302543.6408060/1‑94 (MQ=60)
                                          CGACCGATTGGGATCATGGAGTCAACGGCTTTATAACCGGTCTGTACCGGCCGATCTACGGACTGACGTTCGATAACGCCCGGAGCGATTGCTT                                                     >  SRR4302543.12085/1‑94 (MQ=60)
                                          CGACCGATTGGGATCATGGAGTCAACGGCTTTATAACCGGTCTGTACCGGCCGATCTACGGACTGACGTTCGATAACGCCCGGAGCGATTGCTT                                                     <  SRR4302543.7997517/94‑1 (MQ=60)
                                          CGACCGATTGGGATCATGGAGTCAACGGCTTTATAACCGGTCTGTACCGGCCGATCTACGGACTGACGTTCGATAACGCCCGGAGCGATTGCTT                                                     <  SRR4302543.3438121/94‑1 (MQ=60)
                                           GACCGATTGGGATCATGGAGTCAACGGCTTTATACCCGGTCTGTACCAGCCGATCTACGGACTGACGTTCGATAACGCCCGGAGCGATTGCTTC                                                    <  SRR4302543.6656076/94‑1 (MQ=60)
                                           GACCGATTGGGATCATGGAGTCAACGGCTTTATAACCGGTCTGTACCGGCCGATCTACGGACTGACGTTCGATAACGCCCGGAGCGATTGCTTC                                                    >  SRR4302543.3751683/1‑94 (MQ=60)
                                           GACCGATTGGGATCATGGAGTCAACGGCTTTATAACCGGTCTGTACCGGCCGATCTACGGACTGACGTTCGATAACGCCCGGAGCGATTGCTTC                                                    >  SRR4302543.928548/1‑94 (MQ=60)
                                           GACCGATTGGGATCATGGAGTCAACGGCTTTATAACCGGTCTGTACCGGCCGATCTACGGACTGACGTTCGATAACGCCCGGAGCGATTGCTTC                                                    <  SRR4302543.1547780/94‑1 (MQ=60)
                                           GACCGATTGGGATCATGGAGTCAACGGCTTTATAACCGGTCTGTACCGGCCGATCTACGGACTGACGTTCGATAACGCCCGGAGCGATTGCTTC                                                    >  SRR4302543.3751856/1‑94 (MQ=60)
                                           GACCGATTGGGATCATGGAGTCAACGGCTTTATAACCGGTCTGTACCGGCCGATCTACGGACTGACGTTCGATAACGCCCGGAGCGATTGCTTC                                                    <  SRR4302543.2414/94‑1 (MQ=60)
                                           GACCGATTGGGATCATGGAGTCAACGGCTTTATAACCGGTCTGTACCGGCCGATCTACGGACTGACGTTCGATAACGCCCGGAGCGATTGCTTC                                                    >  SRR4302543.4407656/1‑94 (MQ=60)
                                              CGATTGGGATCATGGAGTCAACGGCTTTATAACCGGTCTGTACCGGCCGATCTACGGACTGACGTTCGATAACGCCCGGAGCGATTGCTTCTAC                                                 >  SRR4302543.6219710/1‑94 (MQ=60)
                                              CGATTGGGATCATGGAGTCAACGGCTTTATAACCGGTCTGTACCGGCCGATCTACGGACTGACGTTCGATAACGCCCGGAGCGATTGCTTCTAC                                                 <  SRR4302543.7811533/94‑1 (MQ=60)
                                              CGATTGGGATCATGGAGTCAACGGCTTTATAACCGGTCTGTACCGGCCGATCTACGGACTGACGTTCGATAACGCCCGGAGCGATTGCTTCTAC                                                 >  SRR4302543.7450804/1‑94 (MQ=60)
                                               GATTGGGATCATGGAGTCAACGGCTTTATAACCGGTCTGTACCGGCCGATCTACGGACTGACGTTCGATAACGCCCGGAGCGATTGCTTCTACA                                                >  SRR4302543.7730618/1‑94 (MQ=60)
                                               GATTGGGATCATGGAGTCAACGGCTTTATAACCGGTCTGTACCGGCCGATCTACGGACTGACGTTCGATAACGCCCGGAGCGATTGCTTCTACA                                                >  SRR4302543.2226744/1‑94 (MQ=60)
                                                ATTGGGATCATGGAGTCAACGGCTTTATAACCGGTCTGTACCGGCCGATCTACGGACTGACGTTCGATAACGCCCGGAGCGATTGCTTCTACAG                                               <  SRR4302543.5441788/94‑1 (MQ=60)
                                                ATTGGGATCATGGAGTCAACGGCTTTATAACCGGTCTGTACCGGCCGATCTACGGACTGACGTTCGATAACGCCCGGAGCGATTGCTTCTACAG                                               <  SRR4302543.7859074/94‑1 (MQ=60)
                                                 TTGGGATCATGGAGTCAACGGCTTTATAACCGGTCTGTACCGGCCGATCTACGGACTGACGTTCGATAACGCCCGGAGCGATTGCTTCTACAGC                                              <  SRR4302543.5142790/94‑1 (MQ=60)
                                                 TTGGGATCATGGAGTCAACGGCTTTATAACCGGTCTGTACCGGCCGATCTACGGACTGACGTTCGATAACGCCCGGAGCGATTGCTTCTACAGC                                              >  SRR4302543.2265747/1‑94 (MQ=60)
                                                  TGGGATCATGGAGTCAACGGCTTTATAACCGGTCTGTACCGGCCGATCTACGGACTGACGTTCGCTAACGCCCGGAGCGATTGCTTCTACAGCA                                             >  SRR4302543.928716/1‑94 (MQ=60)
                                                  TGGGATCATGGAGTCAACGGCTTTATAACCGGTCTGTACCGGCCGATCTACGGACTGACGTTCGATAACGCCCGGAGCGATTGCTTCTACAGCA                                             >  SRR4302543.7018095/1‑94 (MQ=60)
                                                   GGGATCATGGAGTCAACGGCTTTATAACCGGTCTGTACCGGCCGATCTACGGACTGACGTTCGATAACGCCCGGAGCGATTGCTTCTACAGCAG                                            <  SRR4302543.2874793/94‑1 (MQ=60)
                                                   GGGATCATGGAGTCAACGGCTTTATAACCGGTCTGTACCGGCCGATCTACGGACTGACGTTCGATAACGCCCGGAGCGATTGCTTCTACAGCAG                                            <  SRR4302543.6147754/94‑1 (MQ=60)
                                                    GGATCATGGAGTCAACGGCTTTATAACCGGTCTGTACCGGCCGATCTACGGACTGACGTTCGATAACGCCCGGAGCGATTGCTTCTACAGCAGA                                           <  SRR4302543.5676581/94‑1 (MQ=60)
                                                     GATCATGGAGTCAACGGCTTTATAACCGGTCTGTACCGGCCGATCTACGGACTGACGTTCGATAACGCCCGGAGCGATTGCTTCTACAGCAGAG                                          <  SRR4302543.2986545/94‑1 (MQ=60)
                                                      ATCATGGAGTCAACGGCTTTATAACCGGTCTGTACCGGCCGATCTACGGACTGACGTTCGATAACGCCCGGAGCGATTGCTTCTACAGCAGAGA                                         >  SRR4302543.1171683/1‑94 (MQ=60)
                                                      ATCATGGAGTCAACGGCTTTATAACCGGTCTGTACCGGCCGATCTACGGACTGACGTTCGATAACGCCCGGAGCGATTGCTTCTACAGCAGAGA                                         >  SRR4302543.1669783/1‑94 (MQ=60)
                                                       TCATGGAGTCAACGGCTTTATAACCGGTCTGTACCGGCCGATCTACGGACTGACGTTCGATAACGCCCGGAGCGATTGCTTCTACAGCAGAGAA                                        <  SRR4302543.4641528/94‑1 (MQ=60)
                                                        CATGGAGTCAACGGCTTTATAACCGGTCTGTACCGGCCGATCTACGGACTGACGTTCGATAACGCCCGGAGCGATTGCTTCTACAGCAGAGAAG                                       >  SRR4302543.1860628/1‑94 (MQ=60)
                                                        CATGGAGTCAACGGCTTTATAACCGGTCTGTACCGGCCGATCTACGGACTGACGTTCGATAACGCCCGGAGCGATTGCTTCTACAGCAGAGAAG                                       >  SRR4302543.459976/1‑94 (MQ=60)
                                                        CATGGAGTCAACGGCTTTATAACCGGTCTGTACCGGCCGATCTACGGACTGACGTTCGATAACGCCCGGAGCGATTGCTTCTACAGCAGAGAAG                                       <  SRR4302543.5197860/94‑1 (MQ=60)
                                                        CATGGAGTCAACGGCTTTATAACCGGTCTGTACCGGCCGATCTACGGACTGACGTTCGATAACGCCCGGAGCGATTGCTTCTACAGCAGAGAAG                                       >  SRR4302543.2906686/1‑94 (MQ=60)
                                                         ATGGAGTCAACGGCTTTATAACCGGTCTGTACCGGCCGATCTACGGACTGACGTTCGATAACGCCCGGAGCGATTGCTTCTACAGCAGAGAAGC                                      >  SRR4302543.4097587/1‑94 (MQ=60)
                                                         ATGGAGTCAACGGCTTTATAACCGGTCTGTACCGGCCGATCTACGGACTGACGTTCGATAACGCCCGGAGCGATTGCTTCTACAGCAGAGAAGC                                      <  SRR4302543.1899942/94‑1 (MQ=60)
                                                         ATGGAGTCAACGGCTTTATAACCGGTCTGTACCGGCCGATCTACGGACTGACGTTCGATAACGCCCGGAGCGATTGCTTCTACAGCAGAGAAGC                                      >  SRR4302543.5192799/1‑94 (MQ=60)
                                                           GGAGTCAACGTCTTTATAACCGGTCTGTACCGGCCGATCTACGGACTGACGTTCGATAACGCCCGGAGCGATTGCTTCTACAGCAGAGAAGCCG                                    <  SRR4302543.5408543/94‑1 (MQ=60)
                                                           GGAGTCAACGGCTTTATAACCGGTCTGTACCGGCCGATCTACGGACTGACGTTCGATAACGCCCGGAGCGATTGCTTCTACAGCAGAGAAGCCG                                    >  SRR4302543.5996096/1‑94 (MQ=60)
                                                            GAGTCAACGGCTTTATAACCGGTCTGTACCGGCCGATCTACGGACTGACGTTCGATAACGCCCGGAGCGATTGCTTCTACAGCAGAGAAGCCGT                                   <  SRR4302543.297928/94‑1 (MQ=60)
                                                             AGTCAACGGCTTTATAACCGTCCTGTACCGGCCGATCTACGGCGTGACGTTACATCACGCCCGGAGCCATTGCTTCTAgacaacacacacacac                                  >  SRR4302543.377893/1‑78 (MQ=24)
                                                             AGTCAACGGCTTTATAACCGGTCTGTACCGGCCGATCTACGGACTGACGTTCGATAACGCCCGGAGCGATTGCTTCTACAGCAGAGAAGCCGTC                                  >  SRR4302543.7282845/1‑94 (MQ=60)
                                                             AGTCAACGGCTTTATAACCGGTCTGTACCGGCCGATCTACGGACTGACGTTCGATAACGCCCGGAGCGATTGCTTCTACAGCAGAGAAGCCGTC                                  >  SRR4302543.377894/1‑94 (MQ=60)
                                                             AGTCAACGGCTTGATAACCGGTCTGTACCGGCCGATCTACGGACTGACGTTCGATAACGCCCGGAGCGATTGCTTCTACAGCAGAGAAGCCGTC                                  <  SRR4302543.2313914/94‑1 (MQ=60)
                                                              GTCACCGGCTTTATAACCGGTCTGTACCGGCCGATCTACGGACTGACGTTCGATAACGCCCGGAGCGATTGCTTCTACAGCAGAGAAGCCGTCG                                 <  SRR4302543.3411461/94‑1 (MQ=60)
                                                              GTCAACGGCTTTATAACCGGTCTGTACCGGCCGATCTACGGACTGACGTTCGATAACGCCCGGAGCGATTGCTTCTACAGCAGAGAAGCCGTCG                                 <  SRR4302543.5110349/94‑1 (MQ=60)
                                                               TCAACGGCTTTATAACCGGTCTGTACCGGCCGATCTACGGACTGACGTTCGATAACGCCCGGAGCGATTGCTTCTACAGCAGAGAAGCCGTCGT                                >  SRR4302543.3142207/1‑94 (MQ=60)
                                                                CAACGGCTTTATAACCGGTCTGTACCGGCCGATCTACGGACTGACGTTCGATAACGCCCGGAGCGATTGCTTCTACAGCAGAGAAGCCGTCGTG                               >  SRR4302543.4037347/1‑94 (MQ=60)
                                                                CAACGGCTTTATAACCGGTCTGTACCGGCCGATCTACGGACTGACGTTCGATAACGCCCGGAGCGATTGCTTCTACAGCAGAGAAGCCGTCGTG                               <  SRR4302543.4033252/94‑1 (MQ=60)
                                                                CAACGGCTTTATAACCGGTCTGTACCGGCCGATCTACGGACTGACGTTCGATAACGCCCGGAGCGATTGCTTCTACAGCAGAGAAGCCGTCGTG                               <  SRR4302543.4570309/94‑1 (MQ=60)
                                                                CAACGGCTTTATAACCGGTCTGTACCGGCCGATCTACGGACTGACGTTCGATAACGCCCGGAGCGATTGCTTCTACAGCAGAGAAGCCGTCGTG                               >  SRR4302543.1872658/1‑94 (MQ=60)
                                                                 AACGGCTTTATAACCGGTCTGTACCGGCCGATCTACGGACTGACGTTCGATAACGCCCGGAGCGATTGCTTCTACAGCAGAGAAGCCGTCGTGA                              >  SRR4302543.7580637/1‑94 (MQ=60)
                                                                 AACGGCTTTATAACCGGTCTGTACCGGCCGATCTACGGACTGACGTTCGATAACGCCCGGAGCGATTGCTTCTACAGCAGAGAAGCCGTCGTGA                              >  SRR4302543.6336602/1‑94 (MQ=60)
                                                                 AACGGCTTTATAACCGGTCTGTACCGGCCGATCTACGGACTGACGTTCGATAACGCCCGGAGCGATTGCTTCTACAGCAGAGAAGCCGTCGTGA                              >  SRR4302543.4845484/1‑94 (MQ=60)
                                                                 AACGGCTTTATAACCGGTCTGTACCGGCCGATCTACGGACTGACGTTCGATAACGCCCGGAGCGATTGCTTCTACAGCAGAGAAGCCGTCGTGA                              <  SRR4302543.2113485/94‑1 (MQ=60)
                                                                  ACGTCTTTATAACCGGTCTGTCCCGGCCGATCTACGGACTGACGTTCGATAACGCCCGGAGCGATTGCTTCTACAGCAGAGAAGCCGTCGTGAT                             <  SRR4302543.1800821/94‑1 (MQ=60)
                                                                   CGGCTTTATAACCGGTCTGTACCGGCCGATCTACGGACTGACGTTCGATAACGCCCGGAGCGATTGCTTCTACAGCAGAGAAGCCGTCGTGATC                            >  SRR4302543.6133015/1‑94 (MQ=60)
                                                                   CGGCTTTATAACCGGTCTGTACCGGCCGATCTACGGACTGACGTTCGATAACGCCCGGAGCGATTGCTTCTACAGCAGAGAAGCCGTCGTGATC                            <  SRR4302543.7602094/94‑1 (MQ=60)
                                                                    GGCTTTATAACCGGTCTGTACCGGCCGATCTACGGACTGACGTTCGATAACGCCCGGAGCGATTGCTTCTACAGCAGAGAAGCCGTCGTGATCC                           <  SRR4302543.2339710/94‑1 (MQ=60)
                                                                    GGCTTTATAACCGGTCTGTACCGGCCGATCTACGGACTGACGTTCGATAACGCCCGGAGCGATTGCTTCTACAGCAGAGAAGCCGTCGTGATCC                           >  SRR4302543.2979236/1‑94 (MQ=60)
                                                                    GGCTTTATAACCGGTCTGTACCGCCCGATCTACGGACTGATGTTCGATAACGCCCGGAGCGATTGCTTCTACAGCAGAGAAGCCGTCGTGATCC                           <  SRR4302543.2498484/94‑1 (MQ=60)
                                                                      CTTTATAACCGGTCTTTACCGGCCGATCTACGGACTGACGTTCGATAACGCCCGGAGCGATTGCTTCTACAGCAGAGAAGCCGTCGTGATCCAG                         <  SRR4302543.4921375/94‑1 (MQ=60)
                                                                      CTTTATAACCGGTCTGTACCGGCCGATCTACGGACTGACGTTCGATAACGCCCGGAGCGATTGCTTCTACAGCAGAGAAGCCGTCGTGATCCAG                         <  SRR4302543.4961928/94‑1 (MQ=60)
                                                                      CTTTATAACCGGTCTGTACCGGCCGATCTACGGACTGACGTTCGATAACGCCCGGAGCGATTGCTTCTACAGCAGAGAAGCCGTCGTGATCCAG                         <  SRR4302543.5947321/94‑1 (MQ=60)
                                                                      CTTTATAACCGGTCTGTACCGGCCGATCTACGGACTGACGTTCGATAACGCCCGGAGCGATAGCTTCTACAGCAGGGAAGCCGCCGCGATCCAG                         >  SRR4302543.6168636/1‑94 (MQ=60)
                                                                       TTTATAACCGGTCTGTACCGGCCGATCTACGGACTGACGTTCGATAACGCCCGGAGCGATTGCTTCTACAGCAGAGAAGCCGTCGTGATCCAGC                        <  SRR4302543.7359493/94‑1 (MQ=60)
                                                                       TTTATAACCGGTCTGTACCGGCCGATCTACGGACTGACGTTCGATAACGCCCGGAGCGATTGCTTCTACAGCAGAGAAGCCGTCGTGATCCAGC                        >  SRR4302543.7855128/1‑94 (MQ=60)
                                                                        TTATAACCGGTCTGTACCGGCCGATCTACGGACTGACGTTCGATAACGCCCGGAGCGATTGCTTCTACAGCAGAGAAGCCGTCGTGATCCAGCG                       <  SRR4302543.782185/94‑1 (MQ=60)
                                                                         TATAACCGGTCTGTACCGGCCGATCTACGGACTGACGTTCGATAACGCCCGGAGCGATTGCTTCTACAGCAGAGAAGCCGTCGTGATCCAGCGG                      <  SRR4302543.5737845/94‑1 (MQ=60)
                                                                         TATAACCGGTCTGTACCGGCCGATCTACGGACTGACGTGCGATAACGCCCGGAGCGATTGCTTCTACAGCAGAGAAGCCGTCGTGATCCAGCGG                      <  SRR4302543.3935738/94‑1 (MQ=60)
                                                                          ATAACCGGTCTGTACCGGCCGATCTACGGACTGACGTTCGATAACGCCCGGAGCGATTGCTTCTACAGCAGAGAAGCCGTCGTGATCCAGCGGA                     >  SRR4302543.5022454/1‑94 (MQ=60)
                                                                           TAACCGGTCTGTACCGGCCGATCTACGGACTGACGTTCGATAACGCCCGGAGCGATTGCTTCTACAGCAGAGAAGCCGTCGTGATCCAGCGGAC                    <  SRR4302543.7057373/94‑1 (MQ=60)
                                                                            ACCCGGTCTGTCCCGGCCGATCTACGGACTGACGTTCGATAACGCCCGGAGCGATTGCTTCTACAGCAGAGAAGCCGTCGTGATCCAGCGGACC                   <  SRR4302543.6676595/94‑1 (MQ=60)
                                                                            AACCGGTCTGTACCGGCCGATCTACGGACTGACGTTCGATAACGCCCGGAGCGATTGCTTCTACAGCAGAGAAGCCGTCGTGATCCAGCGGACC                   >  SRR4302543.7911333/1‑94 (MQ=60)
                                                                            AACCGGTCTGTACCGGCCGATCTACGGACTGACGTTCGATAACGCCCGGAGCGATTGCTTCTACAGCAGAGAAGCCGTCGTGATCCAGCGGACC                   <  SRR4302543.6676596/94‑1 (MQ=60)
                                                                            AACCGGTCTGTACCGGCCGATCTACGGACTGACGTTCGATAACGCCCGGAGCGATTGCTTCTACAGCAGAGAAGCCGTCGTGATCCAGCGGACC                   <  SRR4302543.7034385/94‑1 (MQ=60)
                                                                             ACCGGTCTGTACCGGCCGATCTACGGACTGACGTTCGATAACGCCCGGAGCGATTGCTTCTACAGCAGAGAAGCCGTCGTGATCCAGCGGACCT                  <  SRR4302543.662895/94‑1 (MQ=60)
                                                                             ACCGGTCTGTACCGGCCGATCTACGGACTGACGTTCGATAACGCCCGGAGCGATTGCTTCTACAGCAGAGAAGCCGTCGTGATCCAGCGGACCT                  <  SRR4302543.5856784/94‑1 (MQ=60)
                                                                               CGGTCTGTACCGGCCGATCTACGGACTGACGTTCGATAACGCCCGGAGCGATTGCTTCTACAGCAGAGAAGCCGTCGTGATCCAGCGGACCTTT                >  SRR4302543.1206092/1‑94 (MQ=60)
                                                                               CGGTCTGTACCGGCCGATCTACGGACTGACGTTCGATAACGCCCGGAGCGATTGCTTCTACAGCAGAGAAGCCGTCGTGATCCAGCGGACCTTT                <  SRR4302543.1919000/94‑1 (MQ=60)
                                                                               CGGTCTGTACCGGCCGATCTACGGACTGACGTTCGATAACGCCCGGAGCGATTGCTTCTACAGCAGAGAAGCCGTCGTGATCCAGCGGACCTTT                >  SRR4302543.2035728/1‑94 (MQ=60)
                                                                                GGTCTGTACCGGCCGATCTACGGACTGACGTTCGATAACGCCCGGAGCGATTGCTTCTACAGCAGAGAAGCCGTCGTGATCCAGCGGACCTTTA               <  SRR4302543.915384/94‑1 (MQ=60)
                                                                                GGTCTGTACCGGCCGATCTACGGACTGACGTTCGATAACGCCCGGAGCGATTGCTTCTACAGCAGAGAAGCCGTCGTGATCCAGCGGACCTTTA               >  SRR4302543.1659002/1‑94 (MQ=60)
                                                                                GGTCTGTACCGGCCGATCTACGGACTGACGTTCGATAACGCCCGGAGCGATTGCTTCTACAGCAGAGAAGCCGTCGTGATCCAGCGGACCTTTA               >  SRR4302543.6440151/1‑94 (MQ=60)
                                                                                 GTCTGTACCGGCCGATCTACGGACTGACGTTCGATAACGCCCGGAGCGATTGCTTCTACAGCAGAGAAGCCGTCGTGATCCAGCGGACCTTTAC              <  SRR4302543.6159373/94‑1 (MQ=60)
                                                                                  TCTGTCCCGGCCGATCTACGGACTGACGTTCGATAACGCCCGGAGCGATTGCTTCTACAGCAGAGAAGCCGTCGTGATCCAGCGGACCTTTACC             <  SRR4302543.2840817/94‑1 (MQ=60)
                                                                                  TCTGTACCGGCCGATCTACGGACTGACGTTCGATAACGCCCGGAGCGATTGCTTCTACAGCAGAGAAGCCGTCGTGATCCAGCGGACCTTTACC             <  SRR4302543.2489663/94‑1 (MQ=60)
                                                                                  TCTGTACCGGCCGATCTACGGACTGACGTTCGATAACGCCCGGAGCGATTGCTTCTACAGCAGAGAAGCCGTCGTGATCCAGCGGACCTTTACC             <  SRR4302543.232179/94‑1 (MQ=60)
                                                                                  TCTGTACCGGCCGATCTACGGACTGACGTTCGATAACGCCCGGAGCGATTGCTTCTACAGCAGAGAAGCCGTCGTGATCCAGCGGACCTTTACC             <  SRR4302543.5888439/94‑1 (MQ=60)
                                                                                  GCTGTACCGGCCGATCTACGGACTGACGTTCGATAACGCCCGGAGCGATTGCTTCTACAGCAGAGAAGCCGTCGTGATCCAGCGGACCTTTACC             <  SRR4302543.5081830/94‑1 (MQ=60)
                                                                                  GCTGTACCGGCCAATCTACGGACTGACGTTCGATAACGCCCGGAGCGATTGCTTCTACAGCAGAGAAGCCGTCGTGATCCAGCGGACCTTTACC             <  SRR4302543.2142073/94‑1 (MQ=60)
                                                                                   CTGTACCGGCCGATCTACGGACTGACGTTCGATAACGCCCGGAGCGATTGCTTCTACAGCAGAGAAGCCGTCGTGATCCAGCGGACCTTTACCG            <  SRR4302543.2423368/94‑1 (MQ=60)
                                                                                   CTGTACCGGCCGATCTACGGACTGACGTTCGATAACGCCCGGAGCGATTGCTTCTACAGCAGAGAAGCCGTCGTGATCCAGCGGACCTTTACCG            >  SRR4302543.6476286/1‑94 (MQ=60)
                                                                                    TGTACCGGCCGATCTACGGACTGACGTTCGATAACGCCCGGAGCGATTGCTTCTACAGCAGAGAAGCCGTCGTGATCCAGCGGACCTTTACCGT           >  SRR4302543.645483/1‑94 (MQ=60)
                                                                                    TGTACCGGCCGATCTACGGACTGACGTTCGATAACGCCCGGAGCGATTGCTTCTACAGCAGAGAAGCCGTCGTGATCCAGCGGACCTTTACCGT           >  SRR4302543.7395984/1‑94 (MQ=60)
                                                                                     GTACCGGCCGATCTACGGACTGACGTTCGATAACGCCCGGAGCGATTGCTTCTACAGCAGAGAAGCCGTCGTGATCCAGCGGACCTTTACCGTC          >  SRR4302543.6754238/1‑94 (MQ=60)
                                                                                     GTACCGGCCGATCTACGGACTGACGTTCGATAACGCCCGGAGCGATTGCTTCTACAGCAGAGAAGCCGTCGTGATCCAGCGGACCTTTACCGTC          >  SRR4302543.5060869/1‑94 (MQ=60)
                                                                                       ACCGGCCGATCTACGGACTGACGTTCGATAACGCCCGGAGCGATTGCTTCTACAGCAGAGAAGCCGTCGTGATCCAGCGGACCTTTACCGTCGA        <  SRR4302543.2370583/94‑1 (MQ=60)
                                                                                       ACCGGCCGATCTACGGACTGACGTTCGATAACGCCCGGAGCGATTGCTTCTACAGCAGAGAAGCCGTCGTGATCCAGCGGACCTTTACCGTCGA        <  SRR4302543.1662051/94‑1 (MQ=60)
                                                                                       ACCGGCCGATCTACGGACTGACGTTCGATAACGCCCGGAGCGATTGCTTCTACAGCAGAGAAGCCGTCGTGATCCAGCGGACCTTTACCGTCGA        <  SRR4302543.7848054/94‑1 (MQ=60)
                                                                                        CCGGCCGATCTACGGACTGACGTTCGATAACGCCCGGAGCGATTGCTTCTACAGCAGAGAAGCCGTCGTGATCCAGCGGACCTTTACCGTCGAT       <  SRR4302543.1007304/94‑1 (MQ=60)
                                                                                         CGGCCGATCTACGGACTGACGTTCGATAACGCCCGGAGCGATTGCTTCTACAGCAGAGAAGCCGTCGTGATCCAGCGGACCTTTACCGTCGATT      >  SRR4302543.504287/1‑94 (MQ=60)
                                                                                         CGGCCGATCTACGGACTGACGTTCGATAACGCCCGGAGCGATTGCTTCTACAGCAGAGAAGCCGTCGTGATCCAGCGGACCTTTACCGTCGATT      >  SRR4302543.7332247/1‑94 (MQ=60)
                                                                                         CGGCCGATCCACGGACTGACGTTCGATAACGCCCGGAGCGATTGCTTCTACAGCAGAGAAGCCGTCGTGATCCAGCGGACCTTTACCGTCGATT      <  SRR4302543.1474507/94‑1 (MQ=60)
                                                                                           GCCGATCTACGGACTGACGTTCGATAACGCCCGGAGCGATTGCTTCTACAGCAGAGAAGCCGTCGTGATCCAGCGGACCTTTACCGTCGATTGG    <  SRR4302543.371393/94‑1 (MQ=60)
                                                                                           GCCGATCTACGGACTGACGTTCGATAACGCCCGGAGCGATTGCTTCTACAGCAGAGAAGCCGTCGTGATCCAGCGGACCTTTACCGTCGATTGG    <  SRR4302543.371394/94‑1 (MQ=60)
                                                                                            CCGATCTACGGACTGACGTTCGATAACGCCCGGAGCGATTGCTTCTACAGCAGAGAAGCCGTCGTGATCCAGCGGACCTTTACCGTCGATTGGG   >  SRR4302543.5146061/1‑94 (MQ=60)
                                                                                             CGATCTACGGACTGACGTTCGATAACGCCCGGAGCGATTGCTTCTACAGCAGAGAAGCCGTCGTGATCCAGCGGACCTTTACCGTCGATTGGTG  >  SRR4302543.4484764/1‑94 (MQ=60)
                                                                                             CGATCTACGGACTGACGTTCGATAACGCCCGGAGCGATTGCTTCTACAGCAGAGAAGCCGTCGTGATCCAGCGGACCTTTACCGTCGATTGGTG  <  SRR4302543.1869003/94‑1 (MQ=60)
                                                                                             CGATCTACGGACTGACGTTCGATAACGCCCGGAGCGATTGCTTCTACAGCAGAGAAGCCGTCGTGATCCAGCGGACCTTTACCGTCGATTGGTG  >  SRR4302543.2282816/1‑94 (MQ=60)
                                                                                             CGATCTACGGACTGACGTTCGATAACGCCCGGAGCGATTGCTTCTACAGCAGAGAAGCCGTCGTGATCCAGCGGACCTTTACCGTCGATTGGTG  <  SRR4302543.7578061/94‑1 (MQ=60)
                                                                                             CGATCTACGGACTGACGTTCGATAACGCCCGGAGCGATTGCTTCTACAGCAGAGAAGCCGTCGTGATCCAGCGGACCTTTACCGTCGATTGGTG  >  SRR4302543.6416941/1‑94 (MQ=60)
                                                                                             |                                                                                             
TTACCTGTCTGACGGTCACCGATGATCAATTCACGCTGACCACGACCGATTGGGATCATGGAGTCAACGGCTTTATAACCGGTCTGTACCGGCTGATCTACGGACTGACGTTCGATAACGCCCGGAGCGATTGCTTCTACAGCAGAGAAGCCGTCGTGATCCAGCGGACCTTTACCGTCGATTGGTG  >  NC_000913/3916962‑3917148

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑