Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I1 R1 1696 279.3 15874187 97.8% 15524954 93.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,930,677 +G intergenic (+175/‑264) kup → / → rbsD low affinity potassium transport system/RbsD

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,930,6761.G99.5% 1158.0 / ‑2.1 366intergenic (+174/‑265)kup/rbsDlow affinity potassium transport system/RbsD
Reads supporting (aligned to +/- strand):  ref base . (1/1);  new base G (189/175);  total (190/176)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.99e-01

Only 100 of 395 total aligned reads displayed.

GTAGAAGAAGTTTTCCACCGCTGCGGTCTGGAAGGATTAAGTTGCCGGATGATGGAAACCTCCTTCTTTATGTCGCATGAGTCGTTGATCCTCGCAAACGCCCGTGGTATTTGCGTCTGCGCGGCAAGCTGTACTTGCTGCTGCAACGTAATGCGCTGCGTGCACCAGATCAATTTGAAA  >  NC_000913/3930584‑3930763
                                                                                             |                                                                                       
gTAGAAGAAGTTTTCCACCGCTGCGGTCTGGAAGGATTAAGTTGCCGGATGATGGAAACCTCCTTCTTTATGTCGCATGAGTCGTTGATCCTc                                                                                          >  1:2228880/1‑93 (MQ=255)
 tAGAAGAAGTTTTCCACCGCTGCGGTCTGGAAGGATTAAGTTGCCGGATGATGGAAACCTCCTTCTTTATGTCGCATGAGTCGTTGATCCTCg                                                                                        >  2:5918517/1‑93 (MQ=255)
   gaagaaGTTTTCCACCGCTGCGGTCTGGAAGGATTAAGTTGCCGGATGATGGAAACCTCCTTCTTTATGTCGCATGAGTCGTTGATCCTCggc                                                                                      >  1:6130250/1‑91 (MQ=255)
         gTTTTCCACCGCTGCGGTCTGGAAGGATTAAGTTGCCGGATGATGGAAACCTCCTTCTTTATGTCGCATGAGTCGTTGATCCTCGGCAAACGc                                                                                 >  2:2466909/1‑93 (MQ=255)
            ttCCACCGCTGCGGTCTGGAAGGATTAAGTTGCCGGATGATGGAAACCTCCTTCTTTATGTCGCATGAGTCGTTGATCCTCGGCAAACGCCCg                                                                              >  2:1605767/1‑93 (MQ=255)
               cACCGCTGCGGTCTGGAAGGATTAAGTTGCCGGATGATGGAAACCTCCTTCTTTATGTCGCATGAGTCGTTGATCCTCGGCAAACGCCCGTgg                                                                           >  1:5255356/1‑93 (MQ=255)
                aCCGCTGCGGTCTGGAAGGATTAAGTTGCCGGATGATGGAAACCTCCTTCTTTATGTCGCATGAGTCGTTGATCCTCGGCAAACGCCCGTGGt                                                                          >  1:1775132/1‑93 (MQ=255)
                aCCGCTGCGGTCTGGAAGGATTAAGTTGCCGGATGATGGAAACCTCCTTCTTTATGTCGCATGAGTCGTTGATCCTCGGCAAACGCCCGTGGt                                                                          >  1:4443018/1‑93 (MQ=255)
                 ccGCTGCGGTCTGGAAGGATTAAGTTGCCGGATGATGGAAACCTCCTTCTTTATGTCGCATGAGTCGTTGATCCTCGGCAAACGCCCGTGGTa                                                                         >  2:3480384/1‑93 (MQ=255)
                 ccGCTGCGGTCTGGAAGGATTAAGTTGCCGGATGATGGAAACCTCCTTCTTTATGTCGCATGAGTCGTTGATCCTCGGCAAACGCCCGTGGTa                                                                         <  1:5025434/93‑1 (MQ=255)
                 ccGCTGCGGTCTGGAAGGATTAAGTTGCCGGATGATGGAAACCTCCTTCTTTATGTCGCATGAGTCGTTGATCCTCGGCAAACGCCCGTGGTa                                                                         >  2:2432801/1‑93 (MQ=255)
                   gCTGCGGTCTGGAAGGATTAAGTTGCCGGATGATGGAAACCTCCTTCTTTATGTCGCATGAGTCGTTGATCCTCGGCAAACGCCCGTGGTAtt                                                                       <  2:2653664/93‑1 (MQ=255)
                   gCTGCGGTCTGGAAGGATTAAGTTGCCGGATGATGGAAACCTCCTTCTTTATGTCGCATGAGTCGTTGATCCTCGGCAAACGCCCGTGGTAtt                                                                       <  1:7559238/93‑1 (MQ=255)
                   gCTGCGGTCTGGAAGGATTAAGTTGCCGGATGATGGAAACCTCCTTCTTTATGTCGCATGAGTCGTTGATCCTCGGCAAACGCCCGTGGTAtt                                                                       >  2:4703917/1‑93 (MQ=255)
                   gCTGCGGTCTGGAAGGATTAAGTTGCCGGATGATGGAAACCTCCTTCTTTATGTCGCATGAGTCGTTGATCCTCGGCAAACGCCCGTGGTAtt                                                                       <  2:5293159/93‑1 (MQ=255)
                   gCTGCGGTCTGGAAGGATTAAGTTGCCGGATGATGGAAACCTCCTTCTTTATGTCGCATGAGTCGTTGATCCTCGGCAAACGCCCGTGGTAtt                                                                       >  2:7123405/1‑93 (MQ=255)
                    cTGCGGTCTGGAAGGATTAAGTTGCCGGATGATGGAAACCTCCTTCTTTATGTCGCATGAGTCGTTGATCCTCGGCAAACGCCCGTGGTAttt                                                                      <  1:6318020/93‑1 (MQ=255)
                     tGCGGTCTGGAAGGATTAAGTTGCCGGATGATGGAAACCTCCTTCTTTATGTCGCATGAGTCGTTGATCCTCGGCAAACGCCCGTGGTATTTg                                                                     >  1:5756387/1‑93 (MQ=255)
                      gCGGTCTGGAAGGATTAAGTTGCCGGATGATGGAAACCTCCTTCTTTATGTCGCATGAGTCGTTGATCCTCGGCAAACGCCCGTGGTATTTGc                                                                    >  1:3124600/1‑93 (MQ=255)
                      gCGGTCTGGAAGGATTAAGTTGCCGGATGATGGAAACCTCCTTCTTTATGTCGCATGAGTCGTTGATCCTCGGCAAACGCCCGTGGTATTTGc                                                                    >  2:5506699/1‑93 (MQ=255)
                        ggTCTGGAAGGATTAAGTTGCCGGATGATGGAAACCTCCTTCTTTATGTCGCATGAGTCGTTGATCCTCGGCAAACGCCCGTGGTATTTGCGt                                                                  <  1:4741722/93‑1 (MQ=255)
                         gTCTGGAAGGATTAAGTTGCCGGATGATGGAAACCTCCTTCTTTATGTCGCATGAGTCGTTGATCCTCGGCAAACGCCCGTGGTATTTGCGTc                                                                 >  1:800697/1‑93 (MQ=255)
                          tCTGGAAGGATTAAGTTGCCGGATGATGGAAACCTCCTTCTTTATGTCGCATGAGTCGTTGATCCTCGGCAAACGCCCGTGGTATTTGCGTCt                                                                >  1:192650/1‑93 (MQ=255)
                            tGGAAGGATTAAGTTGCCGGATGATGGAAACCTCCTTCTTTATGTCGCATGAGTCGTTGATCCTCGGCAAACGCCCGTGGTATTTGCGTCTgc                                                              >  1:726542/1‑93 (MQ=255)
                              gAAGGATTAAGTTGCCGGATGATGGAAACCTCCTTCTTTATGTCGCATGAGTCGTTGATCCTCGGCAAACGCCCGTGGTATTTGCGTCTgcgc                                                            >  1:659971/1‑93 (MQ=255)
                                aGGATTAAGTTGCCGGATGATGGAAACCTCCTTCTTTATGTCGCATGAGTCGTTGATCCTCGGCAAACGCCCGTGGTATTTGCGTCTGCGCgg                                                          >  2:1338023/1‑93 (MQ=255)
                                 ggATTAAGTTGCCGGATGATGGAAACCTCCTTCTTTATGTCGCATGAGTCGTTGATCCTCGGCAAACGCCCGTGGTATTTGCGTCTGCGCGGc                                                         >  1:7274924/1‑93 (MQ=255)
                                 ggATTAAGTTGCCGGATGATGGAAACCTCCTTCTTTATGTCGCATGAGTCGTTGATCCTCGGCAAACGCCCGTGGTATTTGCGTCTGCGCGGc                                                         >  2:6720508/1‑93 (MQ=255)
                                   aTTAAGTTGCCGGATGATGGAAACCTCCTTCTTTATGTCGCATGAGTCGTTGATCCTCGGCAAACGCCCGTGGTATTTGCGTCTGCGCGGCaa                                                       <  1:7364173/93‑1 (MQ=255)
                                   aTTAAGTTGCCGGATGATGGAAACCTCCTTCTTTATGTCGCATGAGTCGTTGATCCTCGGCAAACGCCCGTGGTATTTGCGTCTGCGCGGCaa                                                       <  1:2360734/93‑1 (MQ=255)
                                   aTTAAGTTGCCGGATGATGGAAACCTCCTTCTTTATGTCGCATGAGTCGTTGATCCTCGGCAAACGCCCGTGGTATTTGCGTCTGCGCGGCaa                                                       <  1:2791399/93‑1 (MQ=255)
                                    ttAAGTTGCCGGATGATGGAAACCTCCTTCTTTATGTCGCATGAGTCGTTGATCCTCGGCAAACGCCCGTGGTATTTGCGTCTGCGCGGCAAg                                                      >  2:1970954/1‑93 (MQ=255)
                                    ttAAGTTGCCGGATGATGGAAACCTCCTTCTTTATGTCGCATGAGTCGTTGATCCTCGGCAAACGCCCGTGGTATTTGCGTCTGCGCGGCAAg                                                      <  2:7636249/93‑1 (MQ=255)
                                     tAAGTTGCCGTATGATGGAAACCTCCTTCTTTATGTCGCATGAGTCGTTGATCCTCGGCAAACGCCCGTGGTATTTGCGTCTGCGCGGCAAGc                                                     <  2:4200240/93‑1 (MQ=255)
                                      aaGTTGCCGGATGATGGAAACCTCCTTCTTTATGTCGCATGAGTCGTTGATCCTCGGCAAACGCCCGTGGTATTTGCGTCTGCGCGGCAAGCt                                                    <  1:4564384/93‑1 (MQ=255)
                                           gCCGGATGATGGAAGCCTCCTTCTTTATGTCGCATGAGTCGTTGATCCTCGGCAAACGCCCGTGGTATTTGCGTCTGCGCGGCAAGCTGTACt                                               <  1:693504/93‑1 (MQ=255)
                                           gCCGGATGATGGAAACCTCCTTCTTTATGTCGCATGAGTCGTTGATCCTCGGCAAACGCCCGTGGTATTTGCGTCTGCGCGGCAAGCTGTACt                                               >  1:5324143/1‑93 (MQ=255)
                                           gCCGGATGATGGAAACCTCCTTCTTTATGTCGCATGAGTCGTTGATCCTCGGCAAACGCCCGTGGTATTTGCGTCTGCGCGGCAAGCTGTACt                                               <  2:3218443/93‑1 (MQ=255)
                                             cGGATGATGGAAACCTCCTTCTTTATGTCGCATGAGTCGTTGATCCTCGGCAAACGCCCGTGGTATTTGCGTCTGCGCGGCAAGCTGTACTtg                                             <  2:2120983/93‑1 (MQ=255)
                                              ggATGATGGAAACCTCCTTCTTTATGTCGCATGAGTCGTTGATCCTCGGCAAACGCCCGTGGTATTTGCGTCTGCGCGGCAAGCTGTACTtgc                                            <  2:5153345/93‑1 (MQ=255)
                                              ggATGATGGAAACCTCCTTCTTTATGTCGCATGAGTCGTTGATCCTCGGCAAACGCCCGTGGTATTTGCGTCTGCGCGGCAAGCTGTACTtgc                                            <  1:6419939/93‑1 (MQ=255)
                                              ggATGATGGAAACCTCCTTCTTTATGTCGCATGAGTCGTTGATCCTCGGCAAACGCCCGTGGTATTTGCGTCTGCGCGGCAAGCTGTACTtgc                                            <  2:7714235/93‑1 (MQ=255)
                                               gatgatGGAAACCTCCTTCTTTATGTCGCATGAGTCGTTGATCCTCGGCAAACGCCCGTGGTATTTGCGTCTGCGCGGCAAGCTGTACTtgct                                           >  1:3791547/1‑93 (MQ=255)
                                               gatgatGGAAACCTCCTTCTTTATGTCGCATGAGTCGTTGATCCTCGGCAAACGCCCGTGGTATTTGCGTCTGCGCGGCAAGCTGTACTtgct                                           >  1:3716268/1‑93 (MQ=255)
                                               gatgatGGAAACCTCCTTCTTTATGTCGCATGAGTCGTTGATCCTCGGCAAACGCCCGTGGCATTTGCGTCTGCGCGGCAAGCTGTACTtgct                                           >  1:1640125/1‑93 (MQ=255)
                                                atgatgGAAACCTCCTTCTTTATGTCGCATGAGTCGTTGATCCTCGGCAAACGCCCGTGGTATTTGCGTCTGCGCGGCAAGCTGTACTtgctg                                          <  2:7428392/93‑1 (MQ=255)
                                                 tgatgGAAACCTCCTTCTTTATGTCGCATGAGTCGTTGATCCTCGGCAAACGCCCGTGGTATTTGCGTCTGCGCGGCAAGCTGTACTtgctgc                                         >  1:7404320/1‑93 (MQ=255)
                                                 tgatgGAAACCTCCTTCTTTATGTCGCATGAGTCGTTGATCCTCGGCAAACGCCCGTGGTATTTGCGTCTGCGCGGCAAGCTGTACTtgctgc                                         >  2:4412622/1‑93 (MQ=255)
                                                     ggAAACCTCCTTCTTTATGTCGCATGAGTCGTTGATCCTCGGCAAACGCCCGTGGTATTTGCGTCTGCGCGGCAAGCTGTACTTGCTGCTGCa                                     <  1:3388636/93‑1 (MQ=255)
                                                      gAAACCTCCTTCTTTATGTCGCATGAGTCGTTGATCCTCGGCAAACGCCCGTGGTATTTGCGTCTGCGCGGCAAGCTGTACTTGCTGCTGCaa                                    >  2:4861967/1‑93 (MQ=255)
                                                       aaaCCTCCTTCTTTATGTCGCATGAGTCGTTGATCCTCGGCAAACGCCCGTGGTATTTGCGTCTGCGCGGCAAGCTGTACTTGTTGCTGCAAc                                   >  2:6388996/1‑93 (MQ=255)
                                                       aaaCCTCCTTCTTTATGTCGCATGAGTCGTTGATCCTCGGCAAACGCCCGTGGTATTTGCGTCTGCGCGGCAAGCTGTACTTGCTGCTGCAAc                                   <  2:7820146/93‑1 (MQ=255)
                                                        accctcctTCTTTATGTCGCATGAGTCGTTGATCCTCGGCAAACGCCGGTGGTATTGGCGTCTGCGCGGCAAGTGGTACTTGCTACTGCAACg                                  <  2:2802519/91‑1 (MQ=255)
                                                        aaCCTCCTTCTTTATGTCGCATGAGTCGTTGATCCTCGGCAAACGCCCGTGGTATTTGCGTCTGCGCGGCAAGCTGTACTTGCTGCTGCAACg                                  <  2:2963931/93‑1 (MQ=255)
                                                           ctcctTCTTTATGTCGCATGAGTCGTTGATCCTCGGCAAACGCCCGTGGTATTTGCGTCTGCGCGGCAAGCTGTACTTGCTGCTGCAACGTaa                               <  2:3063839/93‑1 (MQ=255)
                                                           ctcctTCTTTATGTCGCATGAGTCGTTGATCCTCGGCAAACGCCCGTGGTATTTGCGTCTGCGCGGCAAGCTGTACTTGCTGCTGCAACGTaa                               <  1:3968888/93‑1 (MQ=255)
                                                            tcctTCTTTATGTCGCATGAGTCGTTGATCCTCGGCAAACGCCCGTGGTATTTGCGTCTGCGCGGCAAGCTGTACTTGCTGCTGCAACGTAAt                              >  2:3687333/1‑93 (MQ=255)
                                                            tcctTCTTTATGTCGCATGAGTCGTTGATCCTCGGCAAACGCCCGTGGTATTTGCGTCTGCGCGGCAAGCTGTACTTGCTGCTGCAACGTAAt                              <  1:5122002/93‑1 (MQ=255)
                                                             cctTCTTTATGTCGCATGAGTCGTTGATCCTCGGCAAACGCCCGTGGTATTTGCGTCTGCGCGGCAAGCTGTACTTGCTGCTGCAACGTAATg                             <  1:999432/93‑1 (MQ=255)
                                                             cctTCTTTATGTCGCATGAGTCGTTGATCCTCGGCAAACGCCCGTGGTATTTGCGTCTGCGCGGCAAGCTGTACTTGCTGCTGCAACGTAATg                             <  1:4323611/93‑1 (MQ=255)
                                                               ttcttTATGTCGCATGAGTCGTTGATCCTCGGCAAACGCCCGTGGTATTTGCGTCTGCGCGGCAAGCTGTACTTGCTGCTGCAACGTAATgcg                           >  1:5685138/1‑93 (MQ=255)
                                                               ttcttTATGTCGCATGAGTCGGTGATCCTCGGCAAACGCCCGTGGTATTTGCGTCTGCGCGGCAAGCTGTACTTGCTGCTGCAACGTAATgcg                           >  1:1356782/1‑93 (MQ=255)
                                                                tcttTATGTCGCATGAGTCGTTGTTCCTCGGCAAACGCCCGTGGTATTTGCGTCTGCGCGGCAAGCTGTACTTGCTGCTGCAACGTAATgcgc                          <  2:6209891/93‑1 (MQ=255)
                                                                tcttTATGTCGCATGAGTCGTTGATCCTCGGCAAACGCCCGTGGTATTTGCGTCTGCGCGGCAAGCTGTACTTGCTGCTGCAACGTAATgcgc                          <  1:5853828/93‑1 (MQ=255)
                                                                 cttTATGTCGCATGAGTCGTTGATCCTCGGCAAACGCCCGTGGTATTTGCGTCTGCGCGGCAAGCTGTACTTGCTGCTGCAACGTAATGCGCt                         <  1:2585501/93‑1 (MQ=255)
                                                                 cttTATGTCGCATGAGTCGTTGATCCTCGGCAAACGCCCGTGGTATTTGCGTCTGCGCGGCAAGCTGTACTTGCTGCTGCAACGTAATGCGCt                         <  1:4021573/93‑1 (MQ=255)
                                                                  tttATGTCGCATGAGTCGTTGATCCTCGGCAAACGCCCGTGGTATTTGCGTCTGCGCGGCAAGCTGTACTTGCTGCTGCAACGTAATGCGCTg                        >  1:1053458/1‑93 (MQ=255)
                                                                  tttATGTCGCATGAGTCGTTGATCCTCGGCAAACGCCCGTGGTATTTGCGTCTGCGCGGCAAGCTGTACTTGCTGCTGCAACGTAATGCGCTg                        >  2:521509/1‑93 (MQ=255)
                                                                   ttATGTCGCATGAGTCGTTGATCCTCGGCAAACGCCCGTGGTATTTGCGTCTGCGCGGCAAGCTGTACTTGCTGCTGCAACGTAATGCGCTGc                       >  2:95185/1‑93 (MQ=255)
                                                                   ttATGTCGCATGAGTCGTTGATCCTCGGCAAACGCCCGTGGTATTTGCGTCTGCGCGGCAAGCTGTACTTGCTGCTGCAACGTAATGCGCTGc                       >  1:1999068/1‑93 (MQ=255)
                                                                   ttATGTCGCATGAGTCGTTGATCCTCGGCAAACGCCCGTGGTATTTGCGTCTGCGCGGCAAGCTGTACTTGCTGCTGCAACGTAATGCGCTGc                       <  2:7287053/93‑1 (MQ=255)
                                                                   ttATGTCGCATGAGTCGTTGATCCTCGGCAAACGCCCGTGGTATTTGCGTCTGCGCGGCAAGCTGTACTTGCTGCTGCAACGTAATGCGCTGc                       <  2:7177586/93‑1 (MQ=255)
                                                                   ttATGTCGCATGAGTCGTTGATCCTCGGCAAACGCCCGTGGTATTTGCGTCTGCGCGGCAAGCTGTACTTGCTGCTGCAACGTAATGCGCTGc                       <  2:565239/93‑1 (MQ=255)
                                                                    tATGTCGCATGAGTCGTTGATCCTCGGCAAACGCCCGTGGTATTTGCGTCTGCGCGGCAAGCTGTACTTGCTGCTGCAACGTAATGCGCTGCg                      <  1:4874807/93‑1 (MQ=255)
                                                                    tATGTCGCATGAGTCGTTGATCCTCGGCAAACGCCCGTGGTATTTGCGTCTGCGCGGCAAGCTGTACTTGCTGCTGCAACGTAATGCGCTGCg                      >  2:1198594/1‑93 (MQ=255)
                                                                      tGTCGCATGAGTCGTTGATCCTCGGCAAACGCCCGTGGTATTTGCGTCTGCGCGGCAAGCTGTACTTGCTGCTGCAACGTAATGCGCTGCGTg                    >  1:4638066/1‑93 (MQ=255)
                                                                       gTCGCATGAGTCGTTGATCCTCGGCAAACGCCCGTGGTATTTGCGTCTGCGCGGCAAGCTGTACTTGCTGCTGCAACGTAATGCGCTGCGTGc                   <  2:226563/93‑1 (MQ=255)
                                                                       gTCGCATGAGTCGTTGATCCTCGGCAAACGCCCGTGGTATTTGCGTCTGCGCGGCAAGCTGTACTTGCTGCTGCAACGTAATGCGCTGCGTGc                   <  2:4056256/93‑1 (MQ=255)
                                                                        tCGCATGAGTCGTTGATCCTCGGCAAACGCCCGTGGTATTTGCGTCTGCGCGGCAAGCTGTACTTGCTGCTGCAACGTAATGCGCTGCGTGCa                  <  1:712946/93‑1 (MQ=255)
                                                                        tCGCATGAGTCGTTGATCCTCGGCAAACGCCCGTGGTATTTGCGTCTGCGCGGCAAGCTGTACTTGCTGCTGCAACGTAATGCGCTGCGTGCa                  <  1:887043/93‑1 (MQ=255)
                                                                          gCATGAGTCGTTGATCCTCGGCAAACGCCCGTGGTATTTGCGTCTGCGCGGCAAGCTGTACTTGCTGCTGCAACGTAATGCGCTGCGTGCAcc                <  2:3367740/93‑1 (MQ=255)
                                                                           cATGAGTCGTTGATCCTCGGCAAACGCCCGTGGTATTTGCGTCTGCGCGGCAAGCTGTACTTGCTGCTGCAACGTAATGCGCTGCGTGCACCa               <  1:6816341/93‑1 (MQ=255)
                                                                           cATGAGTCGTTGATCCTCGGCAAACGCCCGTGGTATTTGCGTCTGCGCGGCAAGCTGTACTTGCTGCTGCAACGTAATGCGCTGCGTGCACCa               >  1:3247887/1‑93 (MQ=255)
                                                                            aTGAGTCGTTGATCCTCGGCAAACGCCCGTGGTATTTGCGTCTGCGCGGCAAGCTGTACTTGCTGCTGCAACGTAATGCGCTGCGTGCACCAg              >  1:5551943/1‑93 (MQ=255)
                                                                             tGAGTCGTTGATCCTCGGCAAACGCCCGTGGTATTTGCGTCTGCGCGGCAAGCTGTACTTGCTGCTGCAACGTAATGCGCTGCGTGCACCAGa             >  2:7557216/1‑93 (MQ=255)
                                                                              gAGTCGTTGATCCTCGGCAAACGCCCGTGGTATTTGCGTCTGCGCGGCAAGCTGTACTTGCTGCTGCAACGTAATGCGCTGCGTGCACCAGAt            <  2:2535196/93‑1 (MQ=255)
                                                                                 tCGTTGATCCTCGGCAAACGCCCGTGGTATTTGCGTCTGCGCGGCAAGCTGTACTTGCTGCTGCAACGTAATGCGCTGCGTGCACCAGATCaa         >  2:3886060/1‑93 (MQ=255)
                                                                                 tCGTTGATCCTCGGCAAACGCCCGTGGTATTTGCGTCTGCGCGGCAAGCTGTACTTGCTGCTGCAACGTAATGCGCTGCGTGCACCAGATCaa         <  1:7883705/93‑1 (MQ=255)
                                                                                 tCGTTGATCCTCGGCAAACGCCCGTGGGATTTGCGCCTGCGCGGCAAGCTGTACTTGCTGCTGCAACGAAATGCGCTGCGTGCACCAGATCaa         >  2:6839986/1‑93 (MQ=255)
                                                                                  cGTTGATCCTCGGCAAACGCCCGTGGTATTTGCGTCTGCGCGGCAAGCTGTACTTGCTGCTGCAACGTAATGCGCTGCGTGCACCAGATCAAt        <  2:1673358/93‑1 (MQ=255)
                                                                                  cGTTGATCCTCGGCAAACGCCCGTGGTATTTGCGTCTGCGCGGCAAGCTGTACTTGCTGCTGCAACGTAATGCGCTGCGTGCACCAGATCAAt        >  2:4990158/1‑93 (MQ=255)
                                                                                   gTTGATCCTCGGCAAACGCCCGTGGTATTTGCGTCTGCGCGGCAAGCTGTACTTGCTGCTGCAACGTAATGCGCTGCGTGCACCAGATCAAtt       <  2:4346601/93‑1 (MQ=255)
                                                                                   gTTGATCCTCGGCAAACGCCCGTGGTATTTGCGTCTGCGCGGCAAGCTGTACTTGCTGCTGCAACGTAATGCGCTGCGTGCACCAGATCAAtt       >  2:6549005/1‑93 (MQ=255)
                                                                                   gTTGATCCTCGGCAAACGCCCGTGGTATTTGCGTCTGCGCGGCAAGCTGTACTTGCTGCTGCAACGTAATGCGCTGCGTGCACCAGATCAAtt       >  2:176855/1‑93 (MQ=255)
                                                                                   gTTGATCCTCGGCAAACGACCGTGGTATTTGCGTCTGCGCGGCAAGCTGTACTTGCTGCTGCAACGTAATGCGCTGCGTGCACCAGATCAAtt       <  2:4267444/93‑1 (MQ=255)
                                                                                    ttGATCCTCGGCAAACGCCCGTGGTATTTGCGTCTGCGCGGCAAGCTGTACTTGCTGCTGCAACGTAATGCGCTGCGTGCACCAGATCAAttt      <  2:35993/93‑1 (MQ=255)
                                                                                    ttGATCCTCGGCAAACGCCCGTGGTATTTGCGTCTGCGCGGCAAGCTGTACTTGCTGCTGCAACGTAATGCGCTGCGTGCACCAGATCAAttt      <  2:4491798/93‑1 (MQ=255)
                                                                                      gATCCTCGGCAAACGCCCGTGGTATTTGCGTCTGCGCGGCAAGCTGTACTTGCTGCTGCAACGTAATGCGCTGCGTGCACCAGATCAATTTGa    >  1:3044582/1‑93 (MQ=255)
                                                                                      gATCCTCGGCAAACGCCCGTGGTATTTGCGTCTGCGCGGCAAGCTGTACTTGCTGCTGCAACGTAATGCGCTGCGTGCACCAGATCAATTTGa    <  2:4809280/93‑1 (MQ=255)
                                                                                        tCCTCGGCAAACGCCCGTGGTATTTGCGTCTGCGCGGCAAGCTGTACTTGCTGCTGCAACGTAATGCGCTGCGTGCACCAGATCAATTTGaaa  <  1:1900779/93‑1 (MQ=255)
                                                                                             |                                                                                       
GTAGAAGAAGTTTTCCACCGCTGCGGTCTGGAAGGATTAAGTTGCCGGATGATGGAAACCTCCTTCTTTATGTCGCATGAGTCGTTGATCCTCGCAAACGCCCGTGGTATTTGCGTCTGCGCGGCAAGCTGTACTTGCTGCTGCAACGTAATGCGCTGCGTGCACCAGATCAATTTGAAA  >  NC_000913/3930584‑3930763

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 

GATK/CNVnator alignment

BRESEQ :: bam2aln output Only 200 of 201 total aligned reads displayed.
GTAGAAGAAGTTTTCCACCGCTGCGGTCTGGAAGGATTAAGTTGCCGGATGATGGAAACCTCCTTCTTTATGTCGCATGAGTCGTTGATCCTCGCAAACGCCCGTGGTATTTGCGTCTGCGCGGCAAGCTGTACTTGCTGCTGCAACGTAATGCGCTGCGTGCACCAGATCAATTTGAAATCCCGCC  >  NC_000913/3930584‑3930770
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GTAGAAGAAGTTTTCCACCGCTGCGGTCTGGAAGGATTAAGTTGCCGGATGATGGAAACCTCCTTCTTTATGTCGCATGAGTCGTTGATCCTCG                                                                                                <  SRR4302543.740855/94‑1 (MQ=60)
 TAGAAGAAGTTTTCCACCGCTGCGGTCTGGAAGGATTAAGTTGCCGGATGATGGAAACCTCCTTCTTTATGTCGCATGAGTCGTTGATCCTCGG                                                                                              >  SRR4302543.4406214/1‑94 (MQ=60)
 TAGAAGAAGTTTTCCACCGCTGCGGTCTGGAAGGATTAAGTTGCCGGATGATGGAAACCTCCTTCTTTATGTCGCATGAGTCGTTGATCCTCGG                                                                                              >  SRR4302543.4002752/1‑94 (MQ=60)
  AGAAGAAGTTTTCCACCGCTGCGGTCTGGAAGGATTAAGTTGCCGGATGATGGAAACCTCCTTCTTTATGTCGCATGAGTCGTTGATCCTCGgc                                                                                              >  SRR4302543.476084/1‑92 (MQ=60)
  AGAAGAAGTTTTCCACCGCTGCGGTCTGGAAGGATTAAGTTGCCGGATGATGGAAACCTCCTTCTTTATGTCGCATGAGTCGTTGATCCTCGgc                                                                                              <  SRR4302543.7216866/94‑3 (MQ=60)
  AGAAGAAGTTTTCCACCGCTGCGGTCTGGAAGGATTAAGTTGCCGGATGATGGAAACCTCCTTCTTTATGTCGCATGAGTCGTTGATCCTCGgc                                                                                              >  SRR4302543.6188313/1‑92 (MQ=60)
     AGAAGTTTTCCACCGCTGCGGTCTGGAAGGATTAAGTTGCCGGATGATGGAAACCTCCTTCTTTATGTCGCATGAGTCGTTGATCCTCGGCAAA                                                                                           >  SRR4302543.2493162/1‑94 (MQ=60)
      GAAGTTTTCCACCGCTGCGGTCTGGAAGGATTAAGTTGCCGGATGATGGAAACCTCCTTCTTTATGTCGCATGAGTCGTTGATCCTCGGCAAAC                                                                                          >  SRR4302543.3402172/1‑94 (MQ=60)
      GAAGTTTTCCACCGCTGCGGTCTGGAAGGATTAAGTTGCCGGATGATGGAAACCTCCTTCTTTATGTCGCATGAGTCGTTGATCCTCGGCAAAC                                                                                          <  SRR4302543.4814200/94‑1 (MQ=60)
       AAGTTTTCCTCCGCGGCGGTCTGGAAGGATTAAGTTGCCGGATGATTGAACCCTCCTTCTTTATGTCGCATGAGTCGTTGATCCTCGGCAAACG                                                                                         <  SRR4302543.6142575/94‑1 (MQ=60)
       AAGTTTTCCACCGCTGCGGTCTGGAAGGATTAAGTTGCCGGATGATGGAAACCTCCTTCTTTATGTCGCATGAGTCGTTGATCCTCGGCAAACG                                                                                         <  SRR4302543.4801658/94‑1 (MQ=60)
       AAGTTTTCCACCGCTGCGGTCTGGAAGGATTAAGTTGCCGGATGATGGAAACCTCCTTCTTTATGTCGCATGAGTCGTTGATCCTCGGCAAACG                                                                                         <  SRR4302543.2618668/94‑1 (MQ=60)
       AAGTTTTCCACCGCTGCGGTCTGGAAGGATTAAGTTGCCGGATGATGGAAACCTCCTTCTTTATGTCGCATGAGTCGTTGATCCTCGGCAAACG                                                                                         >  SRR4302543.6258429/1‑94 (MQ=60)
       AAGTTTTCCACCGCTGCGGTCTGGAAGGATTAAGTTGCCGGATGATGGAAACCTCCTTCTTTATGTCGCATGAGTCGTTGATCCTCGGCAAACG                                                                                         <  SRR4302543.6142574/94‑1 (MQ=60)
        AGTTTTCCACCGCTGCGGTCTGGAAGGATTAAGTTGCCGGATGATGGAAACCTCCTTCTTTATGTCGCATGAGTCGTTGATCCTCGGCAAACGC                                                                                        <  SRR4302543.6611646/94‑1 (MQ=60)
         GTTTTCCACCGCTGCGGTCTGGAAGGATTAAGTTGCCGGATGATGGAAACCTCCTTCTTTATGTCGCATGAGTCGTTGATCCTCGGCAAACGCC                                                                                       >  SRR4302543.1330421/1‑94 (MQ=60)
         GTTTTCCACCGCTGCGGTCTGGAAGGATTAAGTTGCCGGATGATGGAAACCTCCTTCTTTATGTCGCATGAGTCGTTGATCCTCGGCAAACGCC                                                                                       <  SRR4302543.3568196/94‑1 (MQ=60)
          TTTTCCACCGCTGCGGTCTGGAAGGATTAAGTTGCCGGATGATGGAAACCTCCTTCTTTATGTCGCATGAGTCGTTGATCCTCGGCAAACGCCC                                                                                      <  SRR4302543.1791820/94‑1 (MQ=60)
           TTTCCACCGCTGCGGTCTGGAAGGATTAAGTTGCCGGATGATGGAAACCTCCTTCTTTATGTCGCATGAGTCGTTGATCCTCGGCAAACGCCCG                                                                                     <  SRR4302543.6404332/94‑1 (MQ=60)
           TTTCCACCGCTGCGGTCTGGAAGGATTAAGTTGCCGGATGATGGAAACCTCCTTCTTTATGTCGCATGAGTCGTTGATCCTCGGCAAACGCCCG                                                                                     <  SRR4302543.7901711/94‑1 (MQ=60)
            TTCCACCGCTGCGGTCTGGAAGGATTAAGTTGCCGGATGATGGAAACCTCCTTCTTTATGTCGCATGAGTCGTTGATCCTCGGCAAACGCCCGT                                                                                    <  SRR4302543.3395000/94‑1 (MQ=60)
              CCACCGCTGCGGTCTGGAAGGATTAAGTTGCCGGATGATGGAAACCTCCTTCTTTATGTCGCATGAGTCGTTGATCCTCGGCAAACGCCCGTGG                                                                                  >  SRR4302543.5302753/1‑94 (MQ=60)
              CCACCGCTGCGGTCTGGAAGGATTAAGTTGCCGGATGATGGAAACCTCCTTCTTTATGTCGCATGAGTCGTTGATCCTCGGCAAACGCCCGTGG                                                                                  >  SRR4302543.3753214/1‑94 (MQ=60)
              CCACCGCTGCGGTCTGGAAGGATTAAGTTGCCGGATGATGGAAACCTCCTTCTTTATGTCGCATGAGTCGTTGATCCTCGGCAAACGCCCGTGG                                                                                  <  SRR4302543.5900618/94‑1 (MQ=60)
               CACCGCTGCGGTCTGGAAGGATTAAGTTGCCGGATGATGGAAACCTCCTTCTTTATGTCGCATGAGTCGTTGATCCTCGGCAAACGCCCGTGGT                                                                                 >  SRR4302543.1790994/1‑94 (MQ=60)
               CACCGCTGCGGTCTGGAAGGATTAAGTTGCCGGATGATGGAAACCTCCTTCTTTATGTCGCATGAGTCGTTGATCCTCGGCAAACGCCCGTGGT                                                                                 >  SRR4302543.4483251/1‑94 (MQ=60)
               CACCGCTGCGGTCTGGAAGGATTAAGTTGCCGGATGATGGAAACCTCCTTCTTTATGTCGCATGAGTCGTTGATCCTCGGCAAACGCCCGTGGT                                                                                 >  SRR4302543.194830/1‑94 (MQ=60)
               CACCGCTGCGGTCTGGAAGGATTAAGTTGCCGGATGATGGAAACCTCCTTCTTTATGTCGCATGAGTCGTTGATCCTCGGCAAACGCCCGTGGT                                                                                 >  SRR4302543.260774/1‑94 (MQ=60)
               CACCGCTGCGGTCTGGAAGGATTAAGTTGCCGGATGATGGAAACCTCCTTCTTTATGTCGCATGAGTCGTTGATCCTCGGCAAACGCCCGTGGT                                                                                 >  SRR4302543.3879278/1‑94 (MQ=60)
               CACCGCTGCGGTCTGGAAGGATTAAGTTGCCGGATGATGGAAACCTCCTTCTTTATGTCGCATGAGTCGTTGATCCTCGGCAAACGCCCGTGGT                                                                                 >  SRR4302543.2844468/1‑94 (MQ=60)
                ACCGCTGCGGTCTGGAAGGATTAAGTTGCCGGATGATGGAAACCTCCTTCTTTATGTCGCATGAGTCGTTGATCCTCGGCAAACGCCCGTGGTA                                                                                >  SRR4302543.4005799/1‑94 (MQ=60)
                ACCGCTGCGGTCTGGAAGGATTAAGTTGCCGGATGATGGAAACCTCCTTCTTTATGTCGCATGAGTCGTTGATCCTCGCCAAACGCCCGgggtt                                                                                >  SRR4302543.6301491/1‑89 (MQ=60)
                 CCGCTGCGGTCTGGAAGGATTAAGTTGCCGGATGATGGAAACCTCCTTCTTTATGTCGCATGAGTCGTTGATCCTCGGCAAACGCCCGTGGTAT                                                                               <  SRR4302543.5071171/94‑1 (MQ=60)
                 CCGCTGCGGTCTGGAAGGATTAAGTTGCCGGATGATGGAAACCTCCTTCTTTATGTCGCATGAGTCGTTGATCCTCGGCAAACGCCCGTGGTAT                                                                               >  SRR4302543.6955834/1‑94 (MQ=60)
                 CCGCTGCGGTCTGGAAGGATTAAGTTGCCGGATGATGGAAACCTCCTTCTTTATGTCGCATGAGTCGTTGATCCTCGGCAAACGCCCGTGGTAT                                                                               <  SRR4302543.6854171/94‑1 (MQ=60)
                  CGCTGCGGTCTGGAAGGATTAAGTTGCCGGATGATGGAAACCTCCTTCTTTATGTCGCATGAGTCGTTGATCCTCGGCAAACGCCCGTGGTATT                                                                              >  SRR4302543.4704905/1‑94 (MQ=60)
                  CGCTGCGGTCTGGAAGGATTAAGTTGCCGGATGATGGAAACCTCCTTCTTTATGTCGCATGAGTCGTTGATCCTCGGCAAACGCCCGTGGTATT                                                                              >  SRR4302543.5320498/1‑94 (MQ=60)
                  CGCTGCGGTCTGGAAGGATTAAGTTGCCGGATGATGGAAACCTCCTTCTTTATGTCGCATGAGTCGTTGATCCTCGTCAAACGCCCGTGGTATT                                                                              >  SRR4302543.5320497/1‑94 (MQ=60)
                   GCTGCGGTCTGGAAGGATTAAGTTGCCGGATGATGGAAACCTCCTTCTTTATGTCGCATGAGTCGTTGATCCTCGGCAAACGCCCGTGGTATTT                                                                             <  SRR4302543.7097076/94‑1 (MQ=60)
                   GCTGCGGTCTGGAAGGATTAAGTTGCCGGATGATGGAAACCTCCTTCTTTATGTCGCATGAGTCGTTGATCCTCGGCAAACGCCCGTGGTATTT                                                                             <  SRR4302543.7631203/94‑1 (MQ=60)
                    CTGCGGTCTGGAAGGATTAAGTTGCCGGATGATGGAAACCTCCTTCTTTATGTCGCATGAGTCGTTGATCCTCGGCAAACGCCCGTGGTATTTG                                                                            <  SRR4302543.6377439/94‑1 (MQ=60)
                    CTGCGGTCTGGAAGGATTAAGTTGCCGGATGATGGAAACCTCCTTCTTTATGTCGCATGAGTCGTTGATCCTCGGCAAACGCCCGTGGTATTTG                                                                            >  SRR4302543.6468303/1‑94 (MQ=60)
                    CTGCGGTCTGGAAGGATTAAGTTGCCGGATGATGGAAACCTCCTTCTTTATGTCGCATGAGTCGTTGATCCTCGGCAAACGCCCGTGGTATTTG                                                                            >  SRR4302543.5808841/1‑94 (MQ=60)
                    CCGCGGTCTGGAAGGATTAAGCTGCCGGATGATGGAAACCTCCTTCTTTATGTCGCATGAGACGTTGATCCTAGGCAAACGCCCGTGGTATTTG                                                                            <  SRR4302543.325686/94‑1 (MQ=60)
                     TGCGGTCTGGAAGGATTAAGTTGCCGGATGATGGAAACCTCCTTCTTTATGTCGCATGAGTCGTTGATCCTCGGCAAACGCCCGTGGTATTTGC                                                                           >  SRR4302543.3152703/1‑94 (MQ=60)
                     TGCGGTCTGGAAGGATTAAGTTGCCGGATGATGGAAACCTCCTTCTTTATGTCGCATGAGTCGTTGATCCTCGGCAAACGCCCGTGGTATTTGC                                                                           >  SRR4302543.3152702/1‑94 (MQ=60)
                     TGCGGTCTGGAAGGATTAAGTTGCCGGATGATGGAAACCTCCTTCTTTATGTCGCATGAGTCGTTGATCCTCGGCAAACGCCCGTGGTATTTGC                                                                           <  SRR4302543.1909365/94‑1 (MQ=60)
                       CGGTCTGGAAGGATTAAGTTGCCGGATGATGGAAACCTCCTTCTTTATGTCGCATGAGTCGTTGATCCTCGGCAAACGCCCGTGGTATTTGCGT                                                                         >  SRR4302543.6501473/1‑94 (MQ=60)
                       CGGTCTGGAAGGATTAAGTTGCCGGATGATGGAAACCTCCTTCTTTATGTCGCATGAGTCGTTGATCCTCGGCAAACGCCCGTGGTATTTGCGT                                                                         >  SRR4302543.6503401/1‑94 (MQ=60)
                        GGTCTGGAAGGATTAAGTTGCCGGATGATGGAAACCTCCTTCTTTATGTCGCATGAGTCGTTGATCCTCGGCAAACGCCCGTGGTATTTGCGTC                                                                        <  SRR4302543.4785047/94‑1 (MQ=60)
                        GGTCTGGAAGGATTAAGTTGCCGGATGATGGAAACCTCCTTCTTTATGTCGCATGAGTCGTTGATCCTCGGCAAACGCCCGTGGTATTTGCGTC                                                                        >  SRR4302543.807740/1‑94 (MQ=60)
                         GTCTGGAAGGATTAAGTTGCCGGATGATGGAAACCTCCTTCTTTATGTCGCATGAGTCGTTGATCCTCGGCAAACGCCCGTGGTATTTGCGTCT                                                                       >  SRR4302543.194275/1‑94 (MQ=60)
                           CTGGAAGGATTAAGTTGCCGGATGATGGAAACCTCCTTCTTTATGTCGCATGAGTCGTTGATCCTCGGCAAACGCCCGTGGTATTTGCGTCTGC                                                                     >  SRR4302543.5418032/1‑94 (MQ=60)
                           CTGGAAGGATTAAGTTGCCGGATGATGGAAACCTCCTTCTTTATGTCGCATGAGTCGTTGATCCTCGGCAAACGCCCGTGGTATTTGCGTCTGC                                                                     >  SRR4302543.733075/1‑94 (MQ=60)
                           CTGGAAGGATTAAGTTGCCGGATGATGGAAACCTCCTTCTTTATGTCGCATGAGTCGTTGATCCTCGGCAAACGCCCGTGGTATTTGCGTCTGC                                                                     >  SRR4302543.5101867/1‑94 (MQ=60)
                            TGGAAGGATTAAGTTGCCGGATGATGGAAACCTCCTTCTTTATGTCGCATGAGTCGTTGATCCTCGGCAAACGCCCGTGGTATTTGCGTCTGCG                                                                    <  SRR4302543.2469276/94‑1 (MQ=60)
                            TGGAAGGATTAAGTTGCCGGATGATGGAAACCTCCTTCTTTATGTCGCATGAGTCGTTGATCCTCGGCAAACGCCCGTGGTATTTGCGTCTGCG                                                                    >  SRR4302543.4194995/1‑94 (MQ=60)
                            TGGAAGGATTAAGTTGCCGGATGATGGAAACCTCCTTCTTTATGTCGCATGAGTCGTTGATCCTCGGCAAACGCCCGTGGTATTTGCGTCTGCG                                                                    <  SRR4302543.3801521/94‑1 (MQ=60)
                             GGAAGGATTAAGTTGCCGGATGATGGAAACCTCCTTCTTTATGTCGCATGAGTCGTTGATCCTCGGCAAACGCCCGTGGTATTTGCGTCTGCGC                                                                   >  SRR4302543.1884728/1‑94 (MQ=60)
                             GGAAGGATTAAGTTGCCGGATGATGGAAACCTCCTTCTTTATGTCGCATGAGTCGTTGATCCTCGGCAAACGCCCGTGGTATTTGCGTCTGCGC                                                                   >  SRR4302543.666033/1‑94 (MQ=60)
                              GAAGGATTAAGTTGCCGGATGATGGAAACCTCCTTCTTTATGTCGCATGAGTCGTTGATCCTCGGCAAACGCCCGTGGTATTTGCGTCTGCGCG                                                                  >  SRR4302543.7385097/1‑94 (MQ=60)
                                AGGATTAAGTTGCCGGATGATGGAAACCTCCTTCTTTATGTCGCATGAGTCGTTGATCCTCGGCAAACGCCCGTGGTATTTGCGTCTGCGCGGC                                                                >  SRR4302543.7345190/1‑94 (MQ=60)
                                 GGATTAAGTTGCCGGATGATGGAAACCTCCTTCTTTATGTCGCATGAGTCGTTGATCCTCGGCAAACGCCCGTGGTATTTGCGTCTGCGCGGCA                                                               >  SRR4302543.1520136/1‑94 (MQ=60)
                                  GATTAAGTTGCCGGATGATGGAAACCTCCTTCTTTATGTCGCATGAGTCGTTGATCCTCGGCAAACGCCCGTGGTATTTGCGTCTGCGCGGCAA                                                              >  SRR4302543.7844031/1‑94 (MQ=60)
                                  GATTAAGTTGCCGGATGATGGAAACCTCCTTCTTTATGTCGCATGAGTCGTTGATCCTCGGCAAACGCCCGTGGTATTTGCGTCTGCGCGGCAA                                                              >  SRR4302543.2365593/1‑94 (MQ=60)
                                  GATTAAGTTGCCGGATGATGGAAACCTCCTTCTTTATGTCGCATGAGTCGTTGATCCTCGGCAAACGCCCGTGGTATTTGCGTCTGCGCGGCAA                                                              >  SRR4302543.1769301/1‑94 (MQ=60)
                                   ATTAAGTTGCCGGATGATGGAAACCTCCTTCTTTATGTCGCATGAGTCGTTGATCCTCGGCAAACGCCCGTGGTATTTGCGTCTGCGCGGCAAG                                                             <  SRR4302543.2816890/94‑1 (MQ=60)
                                   ATTAAGTTGCCGGATGATGGAAACCTCCTTCTTTATGTCGCATGAGTCGTTGATCCTCGGCAAACGCCCGTGGTATTTGCGTCTGCGCGGCAAG                                                             >  SRR4302543.1618673/1‑94 (MQ=60)
                                   ATTAAGTTGCCGGATGATGGAAACCTCCTTCTTTATGTCGCATGAGTCGTTGATCCTCGGCAAACGCCCGTGGTATTTGCGTCTGCGCGGCAAG                                                             <  SRR4302543.7434987/94‑1 (MQ=60)
                                   ATTAAGTTGCCGGATGATGGAAACCTCCTTCTTTATGTCGCATGAGTCGTTGATCCTCGGCAAACGCCCGTGGTATTTGCGTCTGCGCGGCAAG                                                             >  SRR4302543.6275146/1‑94 (MQ=60)
                                   ATTAAGTTGCCGGATGATGGAAACCTCCTTCTTTATGTCGCATGAGTCGTTGATCCTCGGCAAACGCCCGTGGTATTTGCGTCTGCGCGGCAAG                                                             <  SRR4302543.2382142/94‑1 (MQ=60)
                                   ATTAAGTTGCCGGATGATGGAAACCTCCTTCTTTATGTCGCATGAGTCGTTGATCCTCGGCAAACGCCCGTGGTATTTGCGTCTGCGCGGCAAG                                                             >  SRR4302543.5051984/1‑94 (MQ=60)
                                    TTAAGTTGCCGGATGATGGAAACCTCCTTCTTTATGTCGCATGAGTCGTTGATCCTCGGCAAACGCCCGTGGTATTTGCGTCTGCGCGGCAAGC                                                            >  SRR4302543.4398783/1‑94 (MQ=60)
                                     TAAGTTGCCGGATGATGGAAACCTCCTTCTTTATGTCGCATGAGTCGTTGATCCTCGGCAAACGCCCGTGGTATTTGCGTCTGCGCGGCAAGCT                                                           <  SRR4302543.7336510/94‑1 (MQ=60)
                                     TAAGTTGCCGGATGATGGAAACCTCCTTCTTTATGTCGCATGAGTCGTTGATCCTCGGCAAACGCCCGTGGTATTTGCGTCTGCGCGGCAAGCT                                                           <  SRR4302543.1672391/94‑1 (MQ=60)
                                     TAAGTTGCCGGATGATGGAAACCTCCTTCTTTATGTCGCATGAGTCGTTGATCCTCGGCAAACGCCCGTGGTATTTGCGTCTGCGCGGCAAGCT                                                           <  SRR4302543.7336509/94‑1 (MQ=60)
                                     TAAGTTGCCGGATGATGGAAACCTCCTTCTTTATGTCGCATGAGTCGTTGATCCTCGGCAAACGCCCGTGGTATTTGCGTCTGCGCGGCAAGCT                                                           <  SRR4302543.6688813/94‑1 (MQ=60)
                                      AAGTTGCCGGATGATGGAAACCTCCTTCTTTATGTCGCATGAGTCGTTGATCCTCGGCAAACGCCCGTGGTATTTGCGTCTGCGCGGCAAGCTG                                                          <  SRR4302543.4605920/94‑1 (MQ=60)
                                      AAGTTGCCGGATGATGGAAACCTCCTTCTTTATGTCGCATGAGTCGTTGATCCTCGGCAAACGCCCGTGGTATTTGCGTCTGCGCGGCAAGCTG                                                          >  SRR4302543.863072/1‑94 (MQ=60)
                                      AAGTTGCCGGATGATGGAAACCTCCTTCTTTATGTCGCATGAGTCGTTGATCCTCGGCAAACGCCCGTGGTATTTGCGTCTGCGCGGCAAGCTG                                                          <  SRR4302543.4006098/94‑1 (MQ=60)
                                       AGTTGCCGGATGATGGAAACCTCCTTCTTTATGTCGCATGAGTCGTTGATCCTCGGCAAACGCCCGTGGTATTTGCGTCTGCGCGGCAAGCTGT                                                         >  SRR4302543.1920261/1‑94 (MQ=60)
                                       AGTTGCCGGATGATGGAAACCTCCTTCTTTATGTCGCATGAGTCGTTGATCCTCGGCAAACGCCCGTGGTATTTGCGTCTGCGCGGCAAGCTGT                                                         <  SRR4302543.7471267/94‑1 (MQ=60)
                                       AGTTGCCGGATGATGGAAACCTCCTTCTTTATGTCACATGAGTCGTTGATCCTCGGCAAACGCCCGTGGTATTTGCGTCTGCGCGGCAAGCTGT                                                         <  SRR4302543.3251661/94‑1 (MQ=60)
                                       AGTTGCCCGATGATGGAAACCTCCTTCTTTATGTCGCATGAGTCGTTGATCCTCGGCAAACGCCCGTGGTATTTGCGTCTGCGCGGCAAGCTGT                                                         <  SRR4302543.3251663/94‑1 (MQ=60)
                                         TTGCCGGATGATGGAAACCTCCTTCTTTATGTCGCATGAGTCGTTGATCCTCGGCAAACGCCCGTGGTATTTGCGTCTGCGCGGCAAGCTGTAC                                                       >  SRR4302543.3238581/1‑94 (MQ=60)
                                          TGCCGGATGATGGAAACCTCCTTCTTTATGTCGCATGAGTCGTTGATCCTCGGCAAACGCCCGTGGTATTTGCGTCTGCGCGGCAAGCTGTACT                                                      >  SRR4302543.5372280/1‑94 (MQ=60)
                                          TGCCGGATGATGGAAACCTCCTTCTTTATGTCGCATGAGTCGTTGATCCTCGGCAAACGCCCGTGGTATTTGCGTCTGCGCGGCAAGCTGTACT                                                      >  SRR4302543.1988449/1‑94 (MQ=60)
                                          TGCCGGATGATGGAAACCTCCTTCTTTATGTCGCATGAGTCGTTGATCCTCGGCAAACGCCCGTGGTATTTGCGTCTGCGCGGCAAGCTGTACT                                                      >  SRR4302543.7467623/1‑94 (MQ=60)
                                           tccgtATGATGGAAACCTCCTTCTTTATGTCGCATGAGTCGTTGATCCTCGGCAAACGCCCGTGGTATTTGCGTCTGCGCGGCAAGCTGTACTT                                                     <  SRR4302543.4638838/89‑1 (MQ=60)
                                           TCCGGATGATGGAAACCTCCTTCTTTATGTCGCATGAGTCGTTGATCCTCGGCAAACGCCCGTGGTATTTGCGTCTGCGCGGCAAGCTGTACTT                                                     <  SRR4302543.7551415/94‑1 (MQ=60)
                                           GCCGGATGATGGAAGCCTCCTTCTTTATGTCGCATGAGTCGTTGATCCTCGGCAAACGCCCGTGGTATTTGCGTCTGCGCGGCAAGCTGTACTT                                                     <  SRR4302543.699863/94‑1 (MQ=60)
                                           GCCGGATGATGGAAACCTCCTTCTTTATGTCGCATGAGTCGTTGATCCTCGGCAAACGCCCGTGGTATTTGCGTCTGCGCGGCAAGCTGTACTT                                                     <  SRR4302543.5633599/94‑1 (MQ=60)
                                            CCGGATGATGGAAACCTCCTTCTTTATGTCGCATGAGTCGTTGATCCTCGGCAAACGCCCGTGGTATTTGCGTCTGCGCGGCAAGCTGTACTTG                                                    <  SRR4302543.4576123/94‑1 (MQ=60)
                                            CCGGATGATGGAAACCTCCTTCTTTATGTCGCATGAGTCGTTGATCCTCGGCAAACGCCCGTGGTATTTGCGTCTGCGCGGCAAGCTGTACTTG                                                    >  SRR4302543.7959101/1‑94 (MQ=60)
                                             CGGATGATGGAAACCTCCTTCTTTATGTCGCATGAGTCGTTGATCCTCGGCAAACGCCCGTGGTATTTGCGTCTGCGCGGCAAGCTGTACTTGC                                                   >  SRR4302543.3439302/1‑94 (MQ=60)
                                             CGGATGATGGAAACCTCCTTCTTTATGTCGCATGAGTCGTTGATCCTCGGCAAACGCCCGTGGTATTTGCGTCTGCGCGGCAAGCTGTACTTGC                                                   >  SRR4302543.833577/1‑94 (MQ=60)
                                              GGATGATGGAAACCTCCTTCTTTATGTCGCATGAGTCGTTGATCCTCGGCAAACGCCCGTGGTATTTGCGTCTGCGCGGCAAGCTGTACTTGCT                                                  <  SRR4302543.936047/94‑1 (MQ=60)
                                              GGATGATGGAAACCTCCTTCTTTATGTCGCATGAGTCGTTGATCCTCGGCAAACGCCCGTGGTATTTGCGTCTGCGCGGCAAGCTGTACTTGCT                                                  <  SRR4302543.6480426/94‑1 (MQ=60)
                                              GGATGATGGAAACCTCCTTCTTTATGTCGCATGAGTCGTTGATCCTCGGCAAACGCCCGTGGTATTTGCGTCTGCGCGGCAAGCTGTACTTGCT                                                  <  SRR4302543.937796/94‑1 (MQ=60)
                                              GGATGATGGAAACCTCCTTCTTTATGTCGCATGAGTCGTTGATCCTCGGCAAACGCCCGTGGTATTTGCGTCTGCGCGGCAAGCTGTACTTGCT                                                  <  SRR4302543.4364945/94‑1 (MQ=60)
                                              GGATGATGGAAACCTCCTTCTTTATGTCGCATGAGTCGTTGATCCTCGGCAAACGCCCGTGGTATTTGCGTCTGCGCGGCAAGCTGTACTTGCT                                                  >  SRR4302543.2066507/1‑94 (MQ=60)
                                              GGATGATGGAAACCTCCTTCTTTATGTCGCATGAGTCGTTGATCCTCGGCAAACGCCCGTGGTATTTGCGTCTGCGCGGCAAGCTGTACTTGCT                                                  >  SRR4302543.3824952/1‑94 (MQ=60)
                                              GGATGATGGAAACCTCCTTCTTTATGTCGCATGAGTCGTTGATCCTCGGCAAACGCCCGTGGTATTTGCGTCTGCGCGGCAAGCTGTACTTGCT                                                  >  SRR4302543.3748949/1‑94 (MQ=60)
                                              GGATGATGGAAACCTCCTTCTTTATGTCGCATGAGTCGTTGATCCTCGGCAAACGCCCGTGGCATTTGCGTCTGCGCGGCAAGCTGTACTTGCT                                                  >  SRR4302543.1654755/1‑94 (MQ=60)
                                                ATGATGGAAACCTCCTTCTTTATGTCGCATGAGTCGTTGATCCTCGGCAAACGCCCGTGGTATTTGCGTCTGCGCGGCCAGCTGTACTTGCTGC                                                >  SRR4302543.1247490/1‑94 (MQ=60)
                                                ATGATGGAAACCTCCTTCTTTATGTCGCATGAGTCGTTGATCCTCGGCAAACGCCCGTGGTATTTGCGTCTGCGCGGCAAGCTGTACTTGCTGC                                                >  SRR4302543.7475388/1‑94 (MQ=60)
                                                 TGATGGAAACCTCCTTCTTTATGTCGCATGAGTCGTTGATCCTCGGCAAACGCCCGTGGTATTTGCGTCTGCGCGGCAAGCTGTACTTGCTGCT                                               <  SRR4302543.7284446/94‑1 (MQ=60)
                                                 TGATGGAAACCTCCTTCTTTATGTCGCATGAGTCGTTGATCCTCGGCAAACGCCCGTGGTATTTGCGTCTGCGCGGCAAGCTGTACTTGCTGCT                                               >  SRR4302543.7533700/1‑94 (MQ=60)
                                                 TGATGGAAACCTCCTTCTTTATGTCGCATGAGTCGTTGATCCTCGGCAAACGCCCGTGGTATTTGCGTCTGCGCGGCAAGCTGTACTTGCTGCT                                               <  SRR4302543.3726106/94‑1 (MQ=60)
                                                  GATGGAAACCTCCTTCTTTATGTCGCATGAGTCGTTGATCCTCGGCAAACGCCCGTGGTATTTGCGTCTGCGCGGCAAGCTGTACTTGCTGCTG                                              <  SRR4302543.6385119/94‑1 (MQ=60)
                                                  GATGGAAACCTCCTTCTTTATGTCGCATGAGTCGTTGATCCTCGGCAAACGCCCGTGGTATTTGCGTCTGCGCGGCAAGCTGTACTTGCTGCTG                                              <  SRR4302543.1588788/94‑1 (MQ=60)
                                                   ATGGAAACCTCCTTCTTTATGTCGCATGAGTCGTTGATCCTCGGCAAACGCCCGTGGTATTTGCGTCTGCGCGGCAAGCTGTACTTGCTGCTGC                                             >  SRR4302543.6946297/1‑94 (MQ=60)
                                                     GGAAACCTCCTTCTTTATGTCGCATGAGTCGTTGATCCTCGGCAAACGCCCGTGGTATTTGCGTCTGCGCGGCAAGCTGTACTTGCTGCTGCAA                                           <  SRR4302543.3419021/94‑1 (MQ=60)
                                                     GGAAACCTCCTTCTTTATGTCGCATGAGTCGTTGATCCTCGGCAAACGCCCGTGGAATTTGCGTCTGCGCGGCAAGCTGTACTTGCTGCTGCAA                                           >  SRR4302543.6116037/1‑94 (MQ=60)
                                                      GAAACCTCCTTCTTTATGTCGCATGAGTCGTTGATCCTCGGCAAACGCCCGTGGTATTTGCGTCTGCGCGGCAAGCTGTACTTGCTGCTGCAAC                                          <  SRR4302543.5797155/94‑1 (MQ=60)
                                                      GAAACCTCCTTCTTTATGTCGCATGAGTCGTTGATCCTCGGCAAACGCCCGTGGTATTTGCGTCTGCGCGGCAAGCTGTACTTGCTGCTGCAAC                                          <  SRR4302543.5798316/94‑1 (MQ=60)
                                                      GAAACCTCCTTCTTTATGTCGCATCAGTCGTTGATCCTCGGCAAACGCCCGTGGTATTTGCGTCTGCGCGGCAAGCTGTACTTGCTGCTGCAAC                                          <  SRR4302543.851327/94‑1 (MQ=60)
                                                       AAACCTCCTTCTTTATGTCGCATGAGTCGTTGATCCTCGGCAAACGCCCGTGGTATTTGCGTCTGCGCGGCAAGCTGTACTTGCTGCTGCAACG                                         >  SRR4302543.5897047/1‑94 (MQ=60)
                                                         ACCTCCTTCTTTATGTCGCATGAGTCGTTGATCCTCGGCAAACGCCCGTGGTATTTGCGTCTGCGCGGCAAGCTGTACTTGCTGCTGCAACGTA                                       >  SRR4302543.4611009/1‑94 (MQ=60)
                                                          CCTCCTTCTTTATGTCGCATGAGTCGTTGATCCTCGGCAAACGCCCGTGGTATTTGCGTCTGCGCGGCAAGCTGTACTTGCTGCTGCAACGTAA                                      <  SRR4302543.6956236/94‑1 (MQ=60)
                                                          CCTCCTTCTTTATGTCGCATGAGTCGTTGATCCTCGGCAAACGCCCGTGGTATTTGCGTCTGCGCGGCAAGCTGTACTTGCTGCTGCAACGTAA                                      >  SRR4302543.2032169/1‑94 (MQ=60)
                                                          CCTCCTTCTTTATGTCGCATGAGTCGTTGATCCTCGGCAAACGCCCGTGGTATTTGCGTCTGCGCGGCAAGCTGTACTTGCTGCTGCAACGTAA                                      >  SRR4302543.1969560/1‑94 (MQ=60)
                                                           CTCCTTCTTTATGTCGCATGAGTCGTTGATCCTCGGCAAACGCCCGTGGTATTTGCGTCTGCGCGGCAAGCTGTACTTGCTGCTGCAACGTAAT                                     >  SRR4302543.6766306/1‑94 (MQ=60)
                                                           CTCCTTCTTTATGTCGCATGAGTCGTTGATCCTCGGCAAACGCCCGTGGTATTTGCGTCTGCGCGGCAAGCTGTACTTGCTGCTGCAACGTAAT                                     >  SRR4302543.8044/1‑94 (MQ=60)
                                                           CTCCTTCTTTATGTCGCATGAGTCGTTGATCCTCGGCAAACGCCCGTGGTATTTGCGTCTGCGCGGCAAGCTGTACTTGCTGCTGCAACGTAAT                                     <  SRR4302543.4786390/94‑1 (MQ=60)
                                                           CTCCTTCTTTATGTCGCATGAGTCGTTGATCCTCGGCAAACGCCCGTGGTATTTGCGTCTGCGCGGCAAGCTGTACTTGCTGCTGCAACGTAAT                                     <  SRR4302543.4004070/94‑1 (MQ=60)
                                                            TCCTTCTTTATGTCGCATGAGTCGTTGATCCTCGGCAAACGCCCGTGGTATTTGCGTCTGCGCGGCAAGCTGTACTTGCTGCTGCAACGTAATG                                    <  SRR4302543.4064841/94‑1 (MQ=60)
                                                            TCCTTCTTTATGTCGCATGAGTCGTTGATCCTCGGCAAACGCCCGTGGTATTTGCGTCTGCGCGGCAAGCTGTACTTGCTGCTGCAACGTAATG                                    >  SRR4302543.2985232/1‑94 (MQ=60)
                                                            TCCTTCTTTATGTCGCATGAGTCGTTGATCCTCGGCAAACGCCCGTGGTATTTGCGTCTGCGCGGCAAGCTGTACTTGCTGCTGCAACGTAATG                                    <  SRR4302543.5168311/94‑1 (MQ=60)
                                                            CCCTTCTTTATGTCGCATGAGTCGTTGATCCTCGGCAAACGCCCGTGGTATTTGCGTCTGCGCGGCAAGCTGTACTTGCTGCTGCAACGTAATG                                    <  SRR4302543.5003343/94‑1 (MQ=60)
                                                             CCTTCTTTATGTCGCATGAGTCGTTGATCCTCGGCAAACGCCCGTGGTATTTGCGTCTGCGCGGCAAGCTGTACTTGCTGCTGCAACGTAATGC                                   <  SRR4302543.1008259/94‑1 (MQ=60)
                                                             CCTTCTTTATGTCGCATGAGTCGTTGATCCTCGGCAAACGCCCGTGGTATTTGCGTCTGCGCGGCAAGCTGTACTTGCTGCTGCAACGTAATGC                                   <  SRR4302543.4688498/94‑1 (MQ=60)
                                                             CCTTCTTTATGTCGCATGAGTCGTTGATCCTCGGCAAACGCCCGTGGTATTTGCGTCTGCGCGGCAAGCTGTACTTGCTGCTGCAACGTAATGC                                   <  SRR4302543.4362867/94‑1 (MQ=60)
                                                             CCTTCTTTATGTCGCATGAGTCGTTGATCCTCGGCAAACGCCCGTGGTATTTGCGTCTGCGCGGCAAGCTGTACTTGCTGCTGCAACGTAATGC                                   <  SRR4302543.519963/94‑1 (MQ=60)
                                                              CTTCTTTATGTCGCATGAGTCGTTGATCCTCGGCAAACGCCCGTGGTATTTGCGTCTGCGCGGCAAGCTGTACTTGCTGCTGCAACGTAATGCG                                  >  SRR4302543.2276894/1‑94 (MQ=60)
                                                              CTTCTTTATGTCGCATGAGTCGTTGATCCTCGGCAAACGCCCGTGGTATTTGCGTCTGCGCGGCAAGCTGTACTTGCTGCTGCAACGTAATGCG                                  >  SRR4302543.5737026/1‑94 (MQ=60)
                                                              CTTCTTTATGTCGCATGAGTCGTTGATCCTCGGCAAACGCCCGTGGTATTTGCGTCTGCGCGGCAAGCTGTACTTGCTGCTGCAACGTAATGCG                                  <  SRR4302543.3384221/94‑1 (MQ=60)
                                                              CTTCTTTATGTCGCATGAGTCGGTGATCCTCGGCAAACGCCCGTGGTATTTGCGTCTGCGCGGCAAGCTGTACTTGCTGCTGCAACGTAATGCG                                  >  SRR4302543.1368920/1‑94 (MQ=60)
                                                                TCTTTATGTCGCATGAGTCGTTGATCCTCGGCAAACGCCCGTGGTATTTGCGTCTGCGCGGCAAGCTGTACTTGCTGCTGCAACGTAATGCGCT                                <  SRR4302543.5907104/94‑1 (MQ=60)
                                                                TCTTTATGTCGCATGAGTCGTTGATCCTCGGCAAACGCCCGTGGTATTTGCGTCTGCGCGGCAAGCTGTACTTGCTGCTGCAACGTAATGCGCT                                <  SRR4302543.1715845/94‑1 (MQ=60)
                                                                 CTTTATGTCGCATGAGTCGTTGATCCTCGGCAAACGCCCGTGGTATTTGCGTCTGCGCGGCAAGCTGTACTTGCTGCTGCAACGTAATGCGCTG                               >  SRR4302543.4906783/1‑94 (MQ=60)
                                                                 CTTTATGTCGCATGAGTCGTTGATCCTCGGCAAACGCCCGTGGTATTTGCGTCTGCGCGGCAAGCTGTACTTGCTGCTGCAACGTAATGCGCTG                               <  SRR4302543.2609021/94‑1 (MQ=60)
                                                                 CTTTATGTCGCATGAGTCGTTGATCCTCGGCAAACGCCCGTGGTATTTGCGTCTGCGCGGCAAGCTGTACTTGCTGCTGCAACGTAATGCGCTG                               >  SRR4302543.7671528/1‑94 (MQ=60)
                                                                 CTTTATGTCGCATGAGTCGTTGATCCTCGGCAAACGCCCGTGGTATTTGCGTCTGCGCGGCAAGCTGTACTTGCTGCTGCAACGTAATGCGCTG                               >  SRR4302543.5132579/1‑94 (MQ=60)
                                                                 CTTTATGTCGCATGAGTCGTTGATCCTCGGCAAACGCCCGTGGTATTTGCGTCTGCGCGGCAAGCTGTACTTGCTGCTGCAACGTAATGCGCTG                               >  SRR4302543.7966338/1‑94 (MQ=60)
                                                                 CTTTATGTCGCATGAGTCGTTGATCCTCGGCAAACGCCCGTGGTATTTGCGTCTGCGCGGCAAGCTGTACTTGCTGCTGCAACGTAATGCGCTG                               <  SRR4302543.4057495/94‑1 (MQ=60)
                                                                 CTTTATGTCGCATGAGTCGTTGATCCTCGGCAAACGCCCGTGGTATTTGCGTCTGCGCGGCAAGCTGTACTTGCTGCTGCAACGTAATGCGCTG                               <  SRR4302543.5669822/94‑1 (MQ=60)
                                                                 CTTTATGTCGCATGAGTCGTTGATCCTCGGCAAACGCCCGTGGTATTTGCGTCTGCGCGGCAAGCTGTACTTGCTGCTGCAACGTAATGCGCTG                               <  SRR4302543.6030653/94‑1 (MQ=60)
                                                                 CTTTATGTCGCATGAGTCGTTGATCCTCGGCAAACGCCCGTGGTATTTGCGTCTGCGCGGCAAGCTGTACTTGCTGCTGCAACGTAATGCGCTG                               >  SRR4302543.1062903/1‑94 (MQ=60)
                                                                  TTTATGTCGCATGAGTCGTTGATCCTCGGCAAACGCCCGTGGTATTTGCGTCTGCGCGGCAAGCTGTACTTGCTGCTGCAACGTAATGCGCTGC                              >  SRR4302543.2017011/1‑94 (MQ=60)
                                                                    TATGTCGCATGAGTCGTTGATCCTCGGCAAACGCCCGTGGTATTTGCGTCTGCGCGGCAAGCTGTACTTGCTGCTGCAACGTAATGCGCTGCGT                            <  SRR4302543.4919239/94‑1 (MQ=60)
                                                                     ATGTCGCATGAGTCGTTGATCCTCGGCAAACGCCCGTGGTATTTGCGTCTGCGCGGCAAGCTGTACTTGCTGCTGCAACGTAATGCGCTGCGTG                           <  SRR4302543.7112529/94‑1 (MQ=60)
                                                                     ATGTCGCATGAGTCGTTGATCCTCGGCAAACGCCCGTGGTATTTGCGTCTGCGCGGCAAGCTGTACTTGCTGCTGCAACGTAATGCGCTGCGTG                           >  SRR4302543.4680247/1‑94 (MQ=60)
                                                                     ATGTCGCATGAGTCGTTGATCCTCGGCAAACGCCCGTGGTATTTGCGTCTGCGCGGCAAGCTGTACTTGCTGCTGCAACGTAATGCGCTGCGTG                           >  SRR4302543.234985/1‑94 (MQ=60)
                                                                     ATGTCGCATGAGTCGTTGATCCTCGGCAAACGCCCGTGGTATTTGCGTCTGCGCGGCAAGCTGTACTTGCTGCTGCAACGTAATGCGCTGCGTG                           <  SRR4302543.7229761/94‑1 (MQ=60)
                                                                     ATGTCGCATGAGTCGTTGATCCTCGGCAAACGCCCGTGGTATTTGCGTCTGCGCGGCAAGCTGTACTTGCTGCTGCAACGTAATGCGCTGCGTG                           <  SRR4302543.7349176/94‑1 (MQ=60)
                                                                     ATGTCGCATGAGTCGTTGATCCTCGGCAAACGCCCGTGGTATTTGCGTCTGCGCGGCAAGCTGTACTTGCTGCTGCAACGTAATGCGCTGCGTG                           >  SRR4302543.4571144/1‑94 (MQ=60)
                                                                     ATGTCGCATGAGTCGTTGATCCTCGGCAAACGCCCGTGGTATTTGCGTCTGCGCGGCAAGCTGTACTTGCTGCTGCAACGTAATGCGCTGCGTG                           <  SRR4302543.193701/94‑1 (MQ=60)
                                                                       GTCGCATGAGTCGTTGATCCTCGGCAAACGCCCGTGGTATTTGCGTCTGCGCGGCAAGCTGTACTTGCTGCTGCAACGTAATGCGCTGCGTGCA                         >  SRR4302543.2926685/1‑94 (MQ=60)
                                                                       GTCGCATGAGTCGTTGATCCTCGGCAAACGCCCGTGGTATTTGCGTCTGCGCGGCAAGCTGTACTTGCTGCTGCAACGTAATGCGCTGCGTGCA                         >  SRR4302543.5034395/1‑94 (MQ=60)
                                                                        TCGCATGAGTCGTTGATCCTCGGCAAACGCCCGTGGTATTTGCGTCTGCGCGGCAAGCTGTACTTGCTGCTGCAACGTAATGCGCTGCGTGCAC                        <  SRR4302543.894898/94‑1 (MQ=60)
                                                                        TCGCATGAGTCGTTGATCCTCGGCAAACGCCCGTGGTATTTGCGTCTGCGCGGCAAGCTGTACTTGCTGCTGCAACGTAATGCGCTGCGTGCAC                        >  SRR4302543.4013881/1‑94 (MQ=60)
                                                                        TCGCATGAGTCGTTGATCCTCGGCAAACGCCCGTGGTATTTGCGTCTGCGCGGCAAGCTGTACTTGCTGCTGCAACGTAATGCGCTGCGTGCAC                        <  SRR4302543.719411/94‑1 (MQ=60)
                                                                         CGCATGAGTCGTTGATCCTCGGCAAACGCCCGTGGTATTTGCGTCTGCGCGGCAAGCTGTACTTGCTGCTGCAACGTAATGCGCTGCGTGCACC                       >  SRR4302543.3780019/1‑94 (MQ=60)
                                                                         CGCATGAGTCGTTGATCCTCGGCAAACGCCCGTGGTATTTGCGTCTGCGCGGCAAGCTGTACTTGCTGCTGCAACGTAATGCGCTGCGTGCACC                       <  SRR4302543.5726444/94‑1 (MQ=60)
                                                                         CGCATGAGTCGTTGATCCTCGGCAAACGCCCGTGGTATTTGCGTCTGCGCGGCAAGCTGTACTTGCTGCTGCAACGTAATGCGCTGCGTGCACC                       >  SRR4302543.747980/1‑94 (MQ=60)
                                                                         CGCATGAGTCGTTGATCCTCGGCAAACGCCCGTGGTATTTGCGTCTGCGCGGCAAGCTGTACTTGCTGCTGCAACGTAATGCGCTGCGTGCACC                       >  SRR4302543.5224309/1‑94 (MQ=60)
                                                                         CGCATGAGTCGTTGATCCTCGGCAAACGCCCGTGGTATTTGCGTCTGCGCGGCAAGCTGTACTTGCTGCTGCAACGTAATGCGCTGCGTGCACC                       >  SRR4302543.7444224/1‑94 (MQ=60)
                                                                         CGCATGAGTCGTTGATCCTCGGCAAACGCCCGTGGTATTTGCGTCTGCGCGGCAAGCTGTACTTGCTGCTGCAACGTAATGCGCTGCGTGCACC                       <  SRR4302543.5556101/94‑1 (MQ=60)
                                                                          GCATGAGTCGTTGATCCTCGGCAAACGCCCGTGGTATTTGCGTCTGCGCGGCAAGCTGTACTTGCTGCTGCAACGTAATGCGCTGCGTGCACCA                      <  SRR4302543.586907/94‑1 (MQ=60)
                                                                          GCATGAGTCGTTGATCCTCGGCAAACGCCCGTGGTATTTGCGTCTGCGCGGCAAGCTGTACTTGCTGCTGCAACGTAATGCGCTGCGTGCACCA                      >  SRR4302543.3277247/1‑94 (MQ=60)
                                                                           CATGAGTCGTTGATCCTCGGCAAACGCCCGTGGTATTTGCGTCTGCGCGGCAAGCTGTACTTGCTGCTGCAACGTAATGCGCTGCGTGCACCAG                     >  SRR4302543.5602432/1‑94 (MQ=60)
                                                                           CATGAGTCGTTGATCCTCGGCAAACGCCCGTGGTATTTGCGTCTGCGCGGCAAGCTGTACTTGCTGCTGCAACGTAATGCGCTGCGTGCACCAG                     <  SRR4302543.6880692/94‑1 (MQ=60)
                                                                           CATGAGTCGTTGATCCTCGGCAAACGCCCGTGGTATTTGCGTCTGCGCGGCAAGCTGTACTTGCTGCTGCAACGTAATGCGCTGCGTGCACCAG                     >  SRR4302543.2399675/1‑94 (MQ=60)
                                                                            ATGAGTCGTTGATCCTCGGCAAACGCCCGTGGTATTTGCGTCTGCGCGGCAAGCTGTACTTGCTGCTGCAACGTAATGCGCTGCGTGCACCAGA                    >  SRR4302543.3959714/1‑94 (MQ=60)
                                                                            ATGAGTCGTTGATCCTCGGCAAACGCCCGTGGTATTTGCGTCTGCGCGGCAAGCTGTACTTGCTGCTGCAACGTAATGCGCTGCGTGCACCAGA                    >  SRR4302543.2208169/1‑94 (MQ=60)
                                                                            ATGAGTCGTTGATCCTCGGCAAACGCCCGTGGTATTTGCGTCTGCGCGGCAAGCTGTACTTGCTGCTGCAACGTAATGCGCTGCGTGCACCAGA                    >  SRR4302543.3145632/1‑94 (MQ=60)
                                                                               AGTCGTTGATCCTCGGCAAACGCCCGTGGTATTTGCGTCTGCGCGGCAAGCTGTACTTGCTGCTGCAACGTAATGCGCTGCGTGCACCAGATCA                 >  SRR4302543.3094155/1‑94 (MQ=60)
                                                                                 TCGTTGATCCTCGGCAAACGCCCGTGGTATTTGCGTCTGCGCGGCAAGCTGTACTTGCTGCTGCAACGTAATGCGCTGCGTGCACCAGATCAAT               <  SRR4302543.7957881/94‑1 (MQ=60)
                                                                                  CGTTGATCCTCGGCAAACGCCCGTGGTATTTGCGTCTGCGCGGCAAGCTGTACTTGCTGCTGCAACGTAATGCGCTGCGTGCACCAGATCAATT              >  SRR4302543.5181238/1‑94 (MQ=60)
                                                                                  CGTTGATCCTCGGCAAACGCCCGTGGTATTTGCGTCTGCGCGGCAAGCTGTACTTGCTGCTGCAACGTAATGCGCTGCGTGCACCAGATCAATT              <  SRR4302543.2721638/94‑1 (MQ=60)
                                                                                  CGTTGATCCTCGGCAAACGCCCGTGGTATTTGCGTCTGCGCGGCAAGCTGTACTTGCTGCTGCAACGTAATGCGCTGCGTGCACCAGATCAATT              <  SRR4302543.556368/94‑1 (MQ=60)
                                                                                   GTTGATCCTCGGCAAACGCCCGTGGTATTTGCGTCTGCGCGGCAAGCTGTACTTGCTGCTGCAACGTAATGCGCTGCGTGCACCAGATCAATTT             >  SRR4302543.5143520/1‑94 (MQ=60)
                                                                                   GTTGATCCTCGGCAAACGCCCGTGGTAGTTGCGTCTGCGCGGCAAGCTGTACTTGCTGCTGCAACGCAATGCGCTGCGTGCACCAGATCAAgtc             >  SRR4302543.7082915/1‑91 (MQ=60)
                                                                                    TTGATCCTCGGCAAACGCCCGTGGTATTTGCGTCTGCGCGGCAAGCTGTACTTGCTGCTGCAACGTAATGCGCTGCGTGCACCAGATCAATTTG            <  SRR4302543.4671119/94‑1 (MQ=60)
                                                                                     TGATCCTCGGCAAACGCCCGTGGTATTTGCGTCTGCGCGGCAAGCTGTACTTGCTGCTGCAACGTAATGCGCTGCGTGCACCAGATCAATTTGA           >  SRR4302543.3072033/1‑94 (MQ=60)
                                                                                     TGATCCTCGGCAAACGCCCGTGGTATTTGCGTCTGCGCGGCAAGCTGTACTTGCTGCTGCAACGTAATGCGCTGCGTGCACCAGATCAATTTGA           >  SRR4302543.5808457/1‑94 (MQ=60)
                                                                                      GATCCTCGGCAAACGCCCGTGGTATTTGCGTCTGCGCGGCAAGCTGTACTTGCTGCTGCAACGTAATGCGCTGCGTGCACCAGATCAATTTGAA          >  SRR4302543.4265569/1‑94 (MQ=60)
                                                                                      GATCCTCGGCAAACGCCCGTGGTATTTGCGTCTGCGCGGCAAGCTGTACTTGCTGCTGCAACGTAATGCGCTGCGTGCACCAGATCAATTTGAA          <  SRR4302543.530878/94‑1 (MQ=60)
                                                                                      GATCCTCGGCAAACGCCCGTGGTATTTGCGTCTGCGCGGCAAGCTGTACTTGCTGCTGCAACGTAATGCGCTGCGTGCACCAGATCAATTTGAA          <  SRR4302543.2690560/94‑1 (MQ=60)
                                                                                        TCCTCGGCAAACGCCCGTGGTATTTGCGTCTGCGCGGCAAGCTGTACTTGCTGCTGCAACGTAATGCGCTGCGTGCACCAGATCAATTTGAAAT        >  SRR4302543.2112763/1‑94 (MQ=60)
                                                                                        TCCTCGGCAAACGCCCGTGGTATTTGCGTCTGCGCGGCAAGCTGTACTTGCTGCTGCAACGTAATGCGCTGCGTGCACCAGATCAATTTGAAAT        <  SRR4302543.1917882/94‑1 (MQ=60)
                                                                                        TCCTCGGCAAACGCCCGTGGTATTTGCGTCTGCGCGGCAAGCTGTACTTGCTGCTGCAACGTAATGCGCTGCGTGCACCAGATCAATTTGAAAT        <  SRR4302543.1925763/94‑1 (MQ=60)
                                                                                        TCCTCGGCAAACGCCCGTGGTATTTGCGTCTGCGCGGCAAGCTGTACTTGCTGCTGCAACGTAATGCGCTGCGTGCACCAGATCAATTTGAAAC        >  SRR4302543.2112762/1‑94 (MQ=60)
                                                                                         CCTCGGCAAACGCCCGTGGTATTTGCGTCTGCGCGGCAAGCTGTACTTGCTGCTGCAACGTAATGCGCTGCGTGCACCAGATCAATTTGAAATC       <  SRR4302543.7256033/94‑1 (MQ=60)
                                                                                            tcgGCAAACGCCCGTGGTATTTGCGTCTGCGCGGCAAGCTGTACTTGCTGCTGCAACGTAATGCGCTGCGTGCACCAGATCAATTTGAAATCCC     <  SRR4302543.386252/91‑1 (MQ=60)
                                                                                            tcgGCAAACGCCCGTGGTATTTGCGTCTGCGCGGCAAGCTGTACTTGCTGCTGCAACGTAATGCGCTGCGTGCACCAGATCAATTTGAAATCCC     <  SRR4302543.91115/91‑1 (MQ=60)
                                                                                             cgGCAAACGCCCGTGGTATTTGCGTCTGCGCGGCAAGCTGTACTTGCTGCTGCAACGTAATGCGCTGCGTGCACCAGATCAATTTGAAATCCCG    <  SRR4302543.28611/92‑1 (MQ=60)
                                                                                             GGCAAACGCCCGTGGTATTTGCGTCTGCGCGGCAAGCTGTACTTGCTGCTGCAACGTAATGCGCTGCGTGCACCAGATCAATTTGAAATCCCGC   >  SRR4302543.868528/1‑94 (MQ=60)
                                                                                               GCAAACGCCCGTGGTATTTGCGTCTGCGCGGCAAGCTGTACTTGCTGCTGCAACGTAATGCGCTGCGTGCACCAGATCAATTTGAAATCCCGCC  <  SRR4302543.2313788/94‑1 (MQ=60)
                                                                                               |                                                                                              
GTAGAAGAAGTTTTCCACCGCTGCGGTCTGGAAGGATTAAGTTGCCGGATGATGGAAACCTCCTTCTTTATGTCGCATGAGTCGTTGATCCTCGCAAACGCCCGTGGTATTTGCGTCTGCGCGGCAAGCTGTACTTGCTGCTGCAACGTAATGCGCTGCGTGCACCAGATCAATTTGAAATCCCGCC  >  NC_000913/3930584‑3930770

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: