Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I1 R1
|
1696 |
279.3 |
15874187 |
97.8% |
15524954 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
3,957,092 |
+CC |
intergenic (+26/+58) |
ilvC → / ← ppiC |
ketol‑acid reductoisomerase/peptidyl‑prolyl cis‑trans isomerase C |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,957,091 | 1 | . | C | 97.5%
| 610.8
/ 10.0
| 237 | intergenic (+25/+59) | ilvC/ppiC | ketol‑acid reductoisomerase/peptidyl‑prolyl cis‑trans isomerase C |
| Reads supporting (aligned to +/- strand): ref base . (0/6); new base C (15/215); total (15/222) |
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.86e-01 |
| * | NC_000913 | 3,957,091 | 2 | . | C | 97.5%
| 615.2
/ 10.0
| 237 | intergenic (+25/+59) | ilvC/ppiC | ketol‑acid reductoisomerase/peptidyl‑prolyl cis‑trans isomerase C |
| Reads supporting (aligned to +/- strand): ref base . (0/6); new base C (15/216); total (15/222) |
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.99e-01 |
Only 100 of 254 total aligned reads displayed.
TTGAGCAGGTAGGTAAGAAACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑A‑‑CTCTCCCACAGGGAGAGGGAGAAAACACTC‑AA‑GCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAAT > NC_000913/3956999‑3957173
||
tGAGCAGGTAGGTAAGAAACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑A‑‑c < 2:5002955/93‑1 (MQ=255)
tGAGCAGGTAGGTAAGAAACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑A‑‑c < 1:4033353/93‑1 (MQ=255)
gAGCAGGTAGGTAAGAAACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGccc‑caccccc‑‑a‑‑ccc > 1:6083347/1‑91 (MQ=255)
gAGCAGGTAGGTAAGAAACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑A‑‑cc < 2:4949321/93‑2 (MQ=255)
gaggtaggtAAGAAACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑A‑‑Ccctc < 1:3235936/92‑1 (MQ=255)
cAGGTAGGTAAGAAACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑A‑‑Ccctc < 2:2317451/93‑1 (MQ=255)
cAGGTAGGTAAGAAACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑A‑‑Ccctc < 1:5066631/93‑1 (MQ=255)
ggtaAGAAACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCcac < 1:1246663/93‑1 (MQ=38)
gtaAGAAACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCcaca < 1:6787292/93‑1 (MQ=38)
gtaAGAAACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCcaca < 1:7455995/93‑1 (MQ=38)
gtaAGAAACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCcaca < 2:7009694/93‑1 (MQ=38)
aaGAAACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACagg < 1:3615712/93‑1 (MQ=37)
aGAAACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACaggg < 2:3164460/93‑1 (MQ=37)
gAAACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACaggga < 1:457889/93‑1 (MQ=37)
gAAACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACaggga < 2:395560/93‑1 (MQ=37)
aaCTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACagggaga < 2:7108580/93‑1 (MQ=37)
aaCTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACagggaga < 2:1857310/93‑1 (MQ=37)
aaCTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACagggaga < 2:5841739/93‑1 (MQ=37)
aCTGCGCGGCTATATGACAGATATGAATCGTATTGCTGTTGCGGGTTAAGTGCGCGCTGTTGCCCTCGCCCCG‑‑ACCCTCTCCCACagggagag < 2:2870707/93‑1 (MQ=25)
cTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACagggagagg < 1:4978038/93‑1 (MQ=25)
cTGCGCGGCTATATGAATGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACagggagagg < 1:7040713/93‑1 (MQ=25)
tGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACagggagaggg < 1:7595418/93‑1 (MQ=25)
gcgcGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACagggagaggga < 1:6238409/93‑1 (MQ=25)
cgcgGCTATATGACAGATATAAAACTTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACagggagagggag < 2:7472267/93‑1 (MQ=21)
gcgGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAgggagagggaga < 2:2692363/93‑1 (MQ=25)
ggCTATATGACAGATATGAAACGTATTGCTGTTGCGTGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGaaa < 2:6151408/93‑1 (MQ=21)
ggCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGaaa < 1:1644846/93‑1 (MQ=25)
gCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCC‑‑ACCCTCTCCCCCCGGGAGGGGGGGaaaa > 1:6840215/1‑93 (MQ=21)
cTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCCCCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAac < 1:4506855/93‑1 (MQ=21)
cTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAac < 2:2192723/93‑1 (MQ=21)
tataTGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAaca < 1:5406072/93‑1 (MQ=21)
tataTGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCC‑‑ACCCTCTCCCCCAGGGGGGGGGGGAAAaca > 2:2546952/1‑93 (MQ=21)
atatGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAacac < 2:2351346/93‑1 (MQ=21)
tatGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGGCCTCCCCCCG‑‑ACCCTCTCCCCCCGGGAGAGGGGGAAAaaacc > 1:4085596/1‑92 (MQ=255)
tatGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCCCTCCCCCAGGGGGAGGGAGAAAaaacc > 1:3512127/1‑92 (MQ=21)
atGACAGATATGAAACGTATTGCTGTTGCGGGTGATGTTCGCGCTGATGCCCTCCCCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTc < 2:1294300/93‑1 (MQ=18)
tGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCCCACCCCGCCC‑‑CTCTCCCCCCGGGGGAGGGGGAAAAAAcac‑a > 2:4105947/1‑93 (MQ=18)
gACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTC‑aa < 2:6706642/93‑1 (MQ=21)
gACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTC‑aa < 2:2961610/93‑1 (MQ=21)
aCAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTC‑AA‑g < 2:1796891/93‑1 (MQ=21)
aGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTC‑AA‑ggc < 2:6537624/93‑3 (MQ=21)
gATATGAACCGTATTGCTGTTGCGGGTGAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACGCTC‑AA‑ggcc < 2:5107855/93‑4 (MQ=17)
gATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTC‑AA‑ggcc < 1:6885298/93‑4 (MQ=21)
gATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTC‑AA‑ggcc < 1:1884302/93‑4 (MQ=21)
gATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTC‑AA‑ggcc < 1:495340/93‑4 (MQ=21)
gATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTC‑AA‑ggcc < 2:2039759/93‑4 (MQ=21)
atGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTtc < 1:2968147/93‑1 (MQ=18)
gAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTtctc < 2:7403027/93‑1 (MQ=18)
aaaCGTATTGCTTTTGCGGGTTAAGTGCGCGCTGATGCCCTCCCCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTcc < 1:2739614/93‑1 (MQ=18)
aaaCGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTcc < 1:2229539/93‑1 (MQ=18)
aaaCGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTcc < 2:6230711/93‑1 (MQ=18)
aaCGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCt < 1:1109978/93‑1 (MQ=18)
aaCGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCt < 1:6514587/93‑1 (MQ=18)
aCGTGTGGCTGTTGCGGGTTAAGGGCGCGCCGACGCCCACACCCCG‑‑ACCCACTCCCACAGGAAGAGGAAGAAAACACTC‑AAGGCCTCCTCCTg < 2:5933071/93‑1 (MQ=255)
aCGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCGCCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTg < 1:7571386/93‑1 (MQ=18)
cGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTgg < 2:6820456/93‑1 (MQ=18)
gTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGga < 2:3203886/93‑1 (MQ=18)
gTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGga < 1:7775180/93‑1 (MQ=18)
tATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGgag < 1:6914992/93‑1 (MQ=18)
tATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGgag < 2:4211005/93‑1 (MQ=18)
aTTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGgaga < 1:5703928/93‑1 (MQ=18)
aTTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGgaga < 1:3857264/93‑1 (MQ=21)
ttGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCCCCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGaa < 2:284712/93‑1 (MQ=18)
tGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAg < 2:302459/93‑1 (MQ=18)
tGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAg < 1:1955563/93‑1 (MQ=18)
gCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAgg < 2:7633044/93‑1 (MQ=18)
tGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACGGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAGGcc < 2:4358666/93‑1 (MQ=18)
gTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCt < 2:4465810/93‑1 (MQ=18)
gCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGc < 1:6340052/93‑1 (MQ=18)
gCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGc < 1:1868894/93‑1 (MQ=18)
gCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGc < 1:1929533/93‑1 (MQ=18)
gggTTAAGTGCGCGCTTAGGCCCTCCCCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTa < 2:5947078/93‑1 (MQ=18)
gggTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTa < 2:4585570/93‑1 (MQ=18)
gggTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCCCTCCCCCCCGGGGAGGGGGGAAACACTCAAA‑GCCCTCTCCTCGGGAAAGCCTTGcct > 2:1111405/1‑91 (MQ=9)
gggTTAAGTGCGCGCTGATGCCCACCCCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTa < 2:5648637/93‑1 (MQ=18)
ttAAGTGCGCGCTGATGCCCTCCCCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTa < 1:1476681/93‑1 (MQ=18)
ttAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTa < 2:1767159/93‑1 (MQ=18)
ttAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTa < 2:1891224/93‑1 (MQ=18)
tAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAg < 2:7711388/93‑1 (MQ=18)
tAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAg < 1:3369415/93‑1 (MQ=18)
aaGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGt < 2:7611085/93‑1 (MQ=18)
aGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGtt < 2:5382038/93‑1 (MQ=18)
aGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGtt < 2:12496/93‑1 (MQ=18)
aGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGtt < 1:7387043/93‑1 (MQ=18)
gcgcTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGt < 1:2327126/93‑1 (MQ=21)
cgcTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTa < 2:5468409/93‑1 (MQ=21)
cgcTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTa < 1:5306769/93‑1 (MQ=21)
gcTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTAc < 2:1675309/93‑1 (MQ=21)
cTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACa < 2:3990027/93‑1 (MQ=21)
cTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACa < 2:3124714/93‑1 (MQ=21)
tGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAg < 2:7863648/93‑1 (MQ=25)
aTGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTCGCGAAGGCCTTGCTATTAGTTGCGGTACAGCa > 2:1372492/1‑93 (MQ=21)
tGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTAc < 2:4018338/93‑1 (MQ=25)
tGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTAc < 1:6472356/93‑1 (MQ=25)
cccTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCt < 1:3453760/93‑1 (MQ=25)
cTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTa > 1:7899927/1‑93 (MQ=25)
tCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTaa > 1:2738320/1‑93 (MQ=25)
tCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTaa < 2:3416009/93‑1 (MQ=25)
tCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTaa < 2:5199088/93‑1 (MQ=25)
cACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAat > 2:856368/1‑93 (MQ=37)
||
TTGAGCAGGTAGGTAAGAAACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑A‑‑CTCTCCCACAGGGAGAGGGAGAAAACACTC‑AA‑GCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAAT > NC_000913/3956999‑3957173
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
TGAGCAGGTAGGTAAGAAACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑A‑‑CTCTCCCACAGGGAGAGGGAGAAAACACTCAA‑G‑CCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATC > NC_000913/3957000‑3957184
|
TGAGCAGGTAGGTAAGAAACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑A‑‑CC < SRR4302543.4069423/94‑1 (MQ=60)
GAGGTAGGTAAGAAACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑A‑‑Ccctct < SRR4302543.3265205/94‑6 (MQ=60)
CAGGTAGGTAAGAAACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑A‑‑Ccctct < SRR4302543.3428072/94‑6 (MQ=60)
CAGGTAGGTAAGAAACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑A‑‑Ccctct < SRR4302543.5112628/94‑6 (MQ=60)
AGGTAAGAAACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCAC < SRR4302543.7971066/94‑1 (MQ=60)
GTTAAGAAACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACA < SRR4302543.839149/94‑1 (MQ=60)
GGTAAGAAACTGCGCGGCTATATGACAGATATGAACCGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACA < SRR4302543.839148/94‑1 (MQ=60)
GGTAAGAAACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACA < SRR4302543.1257854/94‑1 (MQ=60)
GTAAGAAACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAG < SRR4302543.2006840/94‑1 (MQ=60)
GTAAGAAACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAG < SRR4302543.6851392/94‑1 (MQ=60)
GTAAGAAACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAG < SRR4302543.7527424/94‑1 (MQ=60)
TAAGAAACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGG < SRR4302543.4683769/94‑1 (MQ=60)
TAAGAAACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGG < SRR4302543.2291498/94‑1 (MQ=60)
AAGAAACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGG < SRR4302543.4134970/94‑1 (MQ=60)
AAGAAACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGG < SRR4302543.3647590/94‑1 (MQ=60)
AAGAAACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGG < SRR4302543.501330/94‑1 (MQ=60)
GAAACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAG < SRR4302543.462143/94‑1 (MQ=60)
GAAACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAG < SRR4302543.7754542/94‑1 (MQ=60)
GAAACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAG < SRR4302543.7947341/94‑1 (MQ=60)
GAAACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAG < SRR4302543.1261931/94‑1 (MQ=60)
AACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAG < SRR4302543.912785/94‑1 (MQ=60)
AACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAG < SRR4302543.639023/94‑1 (MQ=60)
ACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGG < SRR4302543.6155210/94‑1 (MQ=60)
CTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGG < SRR4302543.1872489/94‑1 (MQ=60)
CTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGG < SRR4302543.196848/94‑1 (MQ=60)
CTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGG < SRR4302543.5023355/94‑1 (MQ=60)
CTGCGCGGCTATATGAATGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGG < SRR4302543.7108687/94‑1 (MQ=60)
TGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGA < SRR4302543.7667576/94‑1 (MQ=60)
TGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGA < SRR4302543.7667575/94‑1 (MQ=60)
GCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAG < SRR4302543.6297275/94‑1 (MQ=60)
CGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAA < SRR4302543.3193224/94‑1 (MQ=60)
GGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAA < SRR4302543.1659535/94‑1 (MQ=60)
GGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAA < SRR4302543.2727979/94‑1 (MQ=60)
CTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCCCCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACA < SRR4302543.4547834/94‑1 (MQ=60)
CTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACA < SRR4302543.3425097/94‑1 (MQ=60)
TATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACAC < SRR4302543.7009106/94‑1 (MQ=60)
TATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACAC < SRR4302543.7469441/94‑1 (MQ=60)
TATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACAC < SRR4302543.5455213/94‑1 (MQ=60)
TATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACAC < SRR4302543.4402410/94‑1 (MQ=60)
ATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGGCCTCCCCCCG‑‑ACCCTCTCCCCCCGGGAGAGGGGGAAAAaacc > SRR4302543.4122228/1‑90 (MQ=60)
ATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACT < SRR4302543.7623814/94‑1 (MQ=60)
ATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCCCTCCCCCAGGGGGAGGGAGAAAAaacc > SRR4302543.3543505/1‑90 (MQ=60)
GACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAA‑G < SRR4302543.2774028/94‑1 (MQ=60)
CAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAA‑G‑GC < SRR4302543.2216637/94‑1 (MQ=60)
AGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAA‑Ggcc < SRR4302543.690599/94‑4 (MQ=60)
GATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGG‑CCT < SRR4302543.4075989/94‑1 (MQ=60)
GATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGG‑CCT < SRR4302543.3984661/94‑1 (MQ=60)
GATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGG‑CCT < SRR4302543.499920/94‑1 (MQ=60)
GATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGG‑CCT < SRR4302543.1901237/94‑1 (MQ=60)
GATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGG‑CCT < SRR4302543.6950064/94‑1 (MQ=60)
ATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGG‑CCTTCT < SRR4302543.2995099/94‑1 (MQ=60)
ATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACACCC‑‑ACCCTCTCCCACACGGAGAGGGAGAAAACAatcaaagcattct > SRR4302543.7352113/1‑81 (MQ=60)
TGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGG‑CCTTCTC < SRR4302543.6856053/94‑1 (MQ=60)
GAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGG‑CCTTCTCC < SRR4302543.1699975/94‑1 (MQ=60)
GAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGG‑CCTTCTCCT < SRR4302543.2764535/94‑1 (MQ=60)
AAACGTATTGCTTTTGCGGGTTAAGTGCGCGCTGATGCCCTCCCCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGG‑CCTTCTCCT < SRR4302543.2764536/94‑1 (MQ=47)
AAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGG‑CCTTCTCCT < SRR4302543.2249674/94‑1 (MQ=60)
AACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGG‑CCTTCTCCTG < SRR4302543.6575947/94‑1 (MQ=60)
AACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGG‑CCTTCTCCTG < SRR4302543.69141/94‑1 (MQ=60)
AACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGG‑CCTTCTCCTG < SRR4302543.1119994/94‑1 (MQ=60)
ACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCGCCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGG‑CCTTCTCCTGG < SRR4302543.7643412/94‑1 (MQ=60)
CGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCC‑‑ACCCTCTCCCACAAGGAGAGGGAGAAAACACacaaaaccctcccctggt > SRR4302543.2556866/1‑76 (MQ=42)
GTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCGGCC‑‑CTCTCCCACAGGGAGAGGGAGAAAACACTCAAGG‑CCTTCTCCTGGAG < SRR4302543.1332831/94‑1 (MQ=39)
GTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGG‑CCTTCTCCTGGAG < SRR4302543.7162966/94‑1 (MQ=60)
GTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGG‑CCTTCTCCTGGAG < SRR4302543.7848510/94‑1 (MQ=60)
tgtttgtgttcggggtgAAGTGCGCGCTGAGGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAA‑GACCTTCTCCTGGAGA < SRR4302543.6979992/77‑1 (MQ=25)
TATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGG‑CCTTCTCCTGGAGA < SRR4302543.6979993/94‑1 (MQ=60)
ATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGG‑CCTTCTCCTGGAGAA < SRR4302543.3891340/94‑1 (MQ=60)
ATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGG‑CCTTCTCCTGGAGAA < SRR4302543.5755952/94‑1 (MQ=60)
TTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGG‑CCTTCTCCTGGAGAAG < SRR4302543.90285/94‑1 (MQ=60)
TGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGG‑CCTTCTCCTGGAGAAGG < SRR4302543.1973104/94‑1 (MQ=60)
TGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGG‑CCTTCTCCTGGAGAAGG < SRR4302543.1919397/94‑1 (MQ=60)
TTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGG‑CCTTCTCCTGGAGAAGGCCTTG < SRR4302543.247821/94‑1 (MQ=60)
TTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGG‑CCTTCTCCTGGAGAAGGCCTTG < SRR4302543.6480076/94‑1 (MQ=60)
TTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGG‑CCTTCTCCTGGAGAAGGCCTTG < SRR4302543.6480077/94‑1 (MQ=60)
TTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGG‑CCTTCTCCTGGAGAAGGCCTTG < SRR4302543.6956016/94‑1 (MQ=60)
TGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑A‑‑Ccccctccacacggggagggggaaaacacccaaggccctctccccgcgaaaggcctgct > SRR4302543.2916536/1‑36 (MQ=60)
GCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGG‑CCTTCTCCTGGAGAAGGCCTTGCT < SRR4302543.6399666/94‑1 (MQ=60)
GCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGG‑CCTTCTCCTGGAGAAGGCCTTGCT < SRR4302543.1946899/94‑1 (MQ=60)
GCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGG‑CCTTCTCCTGGAGAAGGCCTTGCT < SRR4302543.1885683/94‑1 (MQ=60)
GCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGG‑CCTTCTCCTGGAGAAGGCCTTGCT < SRR4302543.5116449/94‑1 (MQ=60)
GGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGG‑CCTTCTCCTGGAGAAGGCCTTGCTAT < SRR4302543.5965561/94‑1 (MQ=60)
GTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGG‑CCTTCTCCTGGAGAAGGCCTTGCTATTA < SRR4302543.1930285/94‑1 (MQ=60)
GTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGG‑CCTTCTCCTGGAGAAGGCCTTGCTATTA < SRR4302543.4746797/94‑1 (MQ=60)
TTAAGTGCGCGCTGATGCCCTCCCCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGG‑CCTTCTCCTGGAGAAGGCCTTGCTATTAG < SRR4302543.1489987/94‑1 (MQ=60)
TTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGG‑CCTTCTCCTGGAGAAGGCCTTGCTATTAG < SRR4302543.5040748/94‑1 (MQ=60)
TTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGG‑CCTTCTCCTGGAGAAGGCCTTGCTATTAG < SRR4302543.1220241/94‑1 (MQ=60)
TAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGG‑CCTTCTCCTGGAGAAGGCCTTGCTATTAGT < SRR4302543.3399681/94‑1 (MQ=60)
TAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGG‑CCTTCTCCTGGAGAAGGCCTTGCTATTAGT < SRR4302543.6228919/94‑1 (MQ=60)
AGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGG‑CCTTCTCCTGGAGAAGGCCTTGCTATTAGTTG < SRR4302543.7458023/94‑1 (MQ=60)
AGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGG‑CCTTCTCCTGGAGAAGGCCTTGCTATTAGTTG < SRR4302543.1889764/94‑1 (MQ=60)
AGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGG‑CCTTCTCCTGGAGAAGGCCTTGCTATTAGTTG < SRR4302543.5727811/94‑1 (MQ=60)
AGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGG‑CCTTCTCCTGGAGAAGGCCTTGCTATTAGTTG < SRR4302543.7005468/94‑1 (MQ=60)
TGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGG‑CCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCG < SRR4302543.5108340/94‑1 (MQ=60)
GCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGG‑CCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTA < SRR4302543.2348264/94‑1 (MQ=60)
GCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGG‑CCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTA < SRR4302543.2785707/94‑1 (MQ=60)
CGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGG‑CCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTAC < SRR4302543.5354691/94‑1 (MQ=60)
GCTGATGCCCTCACCCCG‑‑AGCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGG‑CCTCCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACA < SRR4302543.6588793/94‑1 (MQ=60)
GCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGG‑CCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACA < SRR4302543.5463373/94‑1 (MQ=60)
GCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGG‑CCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACA < SRR4302543.6588792/94‑1 (MQ=60)
CTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGG‑CCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAG < SRR4302543.3518622/94‑1 (MQ=60)
TGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGG‑CCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGT < SRR4302543.7543732/94‑1 (MQ=60)
GATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGG‑CCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTA < SRR4302543.3976380/94‑1 (MQ=60)
GATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGG‑CCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTA < SRR4302543.3385563/94‑1 (MQ=60)
ATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGG‑CCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTAC < SRR4302543.6561730/94‑1 (MQ=60)
TGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGG‑CCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACC < SRR4302543.6533330/94‑1 (MQ=60)
CCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGG‑CCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTT < SRR4302543.3484691/94‑1 (MQ=60)
CCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGG‑CCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTA > SRR4302543.3614555/1‑94 (MQ=60)
CCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGG‑CCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTA < SRR4302543.3216931/94‑1 (MQ=60)
CCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGG‑CCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTA > SRR4302543.7974190/1‑94 (MQ=60)
CCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGG‑CCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTA > SRR4302543.728624/1‑94 (MQ=60)
CTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGG‑CCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAA > SRR4302543.5307675/1‑94 (MQ=60)
CTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGG‑CCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAA > SRR4302543.7720959/1‑94 (MQ=60)
CTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGG‑CCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAA > SRR4302543.2763231/1‑94 (MQ=60)
CTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGG‑CCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAA > SRR4302543.3600334/1‑94 (MQ=60)
TCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGG‑CCTTCTCCTGGGGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAAT > SRR4302543.1651924/1‑94 (MQ=60)
CACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGG‑CCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATG > SRR4302543.4784970/1‑94 (MQ=60)
cccccccgaccCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGG‑CCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAAT < SRR4302543.5655231/83‑1 (MQ=60)
CCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGG‑CCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGAT < SRR4302543.7491360/94‑1 (MQ=60)
CCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGG‑CCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGAT < SRR4302543.7530265/94‑1 (MQ=60)
CCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGG‑CCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGAT < SRR4302543.3912960/94‑1 (MQ=60)
CCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGG‑CCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGAT < SRR4302543.368378/94‑1 (MQ=60)
CCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGG‑CCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGAT > SRR4302543.2794093/1‑94 (MQ=60)
CCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGG‑CCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTAAAGTACCTTAATGAT > SRR4302543.2794092/1‑94 (MQ=60)
cccccgaccCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGG‑CCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGA < SRR4302543.650515/85‑1 (MQ=60)
cccccgaccCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGG‑CCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGA < SRR4302543.650514/85‑1 (MQ=60)
CCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGG‑CCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGATG < SRR4302543.1437286/94‑1 (MQ=60)
CCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGG‑CCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGATG < SRR4302543.4802131/94‑1 (MQ=60)
cgaccCTCTCCCACAGGGAGAGTGAGAAACCACTCAA‑GCCCTTCTCCTGGAGAAGCCCTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTG < SRR4302543.56592/89‑1 (MQ=60)
cgaccCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGG‑CCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTG < SRR4302543.7660665/89‑1 (MQ=60)
gaccCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGG‑CCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGA > SRR4302543.7789746/5‑94 (MQ=60)
accCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGG‑CCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGAT < SRR4302543.3966464/91‑1 (MQ=60)
accCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGG‑CCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGAT < SRR4302543.3409831/91‑1 (MQ=60)
accCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGG‑CCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGAT < SRR4302543.2113585/91‑1 (MQ=60)
accCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGG‑CCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGAT > SRR4302543.2797748/4‑94 (MQ=60)
C‑‑CTCTCCCACAGGGAGAGGGAGAAAACACTCAAGG‑CCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGATAT < SRR4302543.1119761/94‑1 (MQ=60)
C‑‑CTCTCCCACAGGGAGAGGGAGAAAACACTCAAGG‑CCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGATAT < SRR4302543.3869823/94‑1 (MQ=60)
C‑‑CTCTCCCACAGGGAGAGGGAGAAAACACTCAAGG‑CCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGATAT < SRR4302543.6343516/94‑1 (MQ=60)
C‑‑CTCTCCCACAGGGAGAGGGAGAAAACACTCAAGG‑CCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGATAT > SRR4302543.7409835/1‑94 (MQ=60)
C‑‑CTCTCCCACAGGGAGAGGGAGAAAACACTCAAGG‑CCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGCACAGTACCTTAATGATGTGATAT < SRR4302543.7727214/94‑1 (MQ=60)
ccCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGG‑CCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGATA > SRR4302543.1723413/3‑94 (MQ=60)
ccCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGG‑CCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGATA > SRR4302543.1596285/3‑94 (MQ=60)
ccCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGG‑CCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGATA < SRR4302543.2299976/92‑1 (MQ=60)
ccCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGG‑CCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGATA < SRR4302543.4340073/92‑1 (MQ=60)
ccCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGG‑CCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGATA > SRR4302543.2112732/3‑94 (MQ=60)
ccCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGG‑CCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGATA > SRR4302543.2112731/3‑94 (MQ=60)
CTCTCCCACAGGGAGAGGGAGAAAACACTCAAGG‑CCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGATATC > SRR4302543.7418397/1‑94 (MQ=60)
CTCTCCCACAGGGAGAGGGAGAAAACACTCAAGG‑CCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGATATC < SRR4302543.700984/94‑1 (MQ=60)
CTCTCCCACAGGGAGAGGGAGAAAACACTCAAGG‑CCTTCTCCTGGAGAAGGCCTTGCTATTAGTCGCGGTACAGTACCTTAATGATGTGATATC > SRR4302543.5122537/1‑94 (MQ=60)
CTCTCCCACAGGGAGAGGGAGAAAACACTCAAGG‑CCTTCCCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGATATC > SRR4302543.6987013/1‑94 (MQ=60)
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TGAGCAGGTAGGTAAGAAACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑A‑‑CTCTCCCACAGGGAGAGGGAGAAAACACTCAA‑G‑CCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATC > NC_000913/3957000‑3957184
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
