Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
1873 |
183.1 |
9376148 |
98.2% |
9207377 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
3,957,092 |
+CC |
intergenic (+26/+58) |
ilvC → / ← ppiC |
ketol‑acid reductoisomerase/peptidyl‑prolyl cis‑trans isomerase C |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,957,091 | 1 | . | C | 93.9%
| 324.3
/ 18.0
| 132 | intergenic (+25/+59) | ilvC/ppiC | ketol‑acid reductoisomerase/peptidyl‑prolyl cis‑trans isomerase C |
| Reads supporting (aligned to +/- strand): ref base . (0/8); new base C (2/122); total (2/130) |
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.65e-01 |
| * | NC_000913 | 3,957,091 | 2 | . | C | 94.0%
| 326.6
/ 18.0
| 133 | intergenic (+25/+59) | ilvC/ppiC | ketol‑acid reductoisomerase/peptidyl‑prolyl cis‑trans isomerase C |
| Reads supporting (aligned to +/- strand): ref base . (0/8); new base C (2/123); total (2/131) |
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.13e-01 |
Only 100 of 158 total aligned reads displayed.
TTGAGCAGGTAGGTAAGAAACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATG‑‑CCCTCACC‑CCG‑‑A‑‑C‑‑TCTCCCACAGGGAGAGGGAGAAAACACTC‑AA‑GCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAAT > NC_000913/3956999‑3957173
||
ttGAGCAGGTAGGTAAGAAACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATG‑‑CCCTCACC‑CCG‑‑a < 1:2515700/93‑1 (MQ=255)
tGAGCAGGTAGGTAAGAAACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATG‑‑CCCTCACC‑CCG‑‑A‑‑c < 1:1783410/93‑1 (MQ=255)
tGAGCAGGTAGGTAAGAAACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATG‑‑CCCTCACC‑CCG‑‑A‑‑c < 2:1986456/93‑1 (MQ=255)
aGCAGGTAGGTAAGAAACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATG‑‑CCCTCACC‑CCG‑‑A‑‑ccc < 1:4590245/93‑3 (MQ=255)
aGCAGGTAGGTAAGAAACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATG‑‑CCCTCACC‑CCG‑‑A‑‑ccc < 1:3727938/93‑3 (MQ=255)
cAGGTAGGTAAGAAACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATG‑‑CCCTCACC‑CCG‑‑A‑‑C‑‑cctc < 2:502238/93‑1 (MQ=255)
taggtaAGAAACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGTTTAAGTGCGCGCTGATG‑‑CCCTCACC‑CCG‑‑A‑‑C‑‑cctctccc < 2:4327998/93‑5 (MQ=38)
aaGAAACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATG‑‑CCCTCACC‑CCG‑‑ACCC‑‑TCTCCCACagg < 1:66379/93‑1 (MQ=37)
aGAAACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATG‑‑CCCTCACC‑CCG‑‑ACCC‑‑TCTCCCACaggg < 2:1011315/93‑1 (MQ=37)
aGAAACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATG‑‑CCCTCACC‑CCG‑‑ACCC‑‑TCTCCCACaggg < 1:3123040/93‑1 (MQ=37)
gAAACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATG‑‑CCCTCACC‑CCG‑‑ACCC‑‑TCTCCCACaggga < 2:2283446/93‑1 (MQ=37)
gAAACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATG‑‑CCCTCACC‑CCG‑‑ACCC‑‑TCTCCCACaggga < 2:4022670/93‑1 (MQ=37)
gAAACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATG‑‑CCCTCACC‑CCG‑‑ACCC‑‑TCTCCCACaggga < 2:1193931/93‑1 (MQ=37)
gAAACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATG‑‑CCCTCACC‑CCG‑‑ACCC‑‑TCTCCCACaggga < 2:2025620/93‑1 (MQ=37)
gAAACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATG‑‑CCCTCACC‑CCG‑‑ACCC‑‑TCTCCCACaggga < 1:1973708/93‑1 (MQ=37)
aaCTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATG‑‑CCCTCACC‑CCG‑‑ACCC‑‑TCTCCCACagggaga < 1:2454025/93‑1 (MQ=37)
aaCTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATG‑‑CCCTCACC‑CCG‑‑ACCC‑‑TCTCCCACagggaga < 1:2716087/93‑1 (MQ=37)
aaCTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATG‑‑CCCTCACC‑CCG‑‑ACCC‑‑TCTCCCACagggaga < 2:1616798/93‑1 (MQ=37)
aCTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATG‑‑CCCTCACC‑CCG‑‑ACCC‑‑TCTCCCACagggagag < 2:837989/93‑1 (MQ=37)
aCTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATG‑‑CCCTCACC‑CCG‑‑ACCC‑‑TCTCCCACagggagag < 1:4013836/93‑1 (MQ=37)
aCTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATG‑‑CCCTCACC‑CCG‑‑ACCC‑‑TCTCCCACagggagag < 2:656650/93‑1 (MQ=37)
cTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATG‑‑CCCTCACC‑CCG‑‑ACCC‑‑TCTCCCACagggagagg < 2:3526764/93‑1 (MQ=25)
tGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATG‑‑CCCTCACC‑CCG‑‑ACCC‑‑TCTCCCACagggagaggg < 2:1063633/93‑1 (MQ=25)
cgcgGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATG‑‑CCCTCACC‑CCG‑‑ACCC‑‑TCTCCCACagggagagggag < 1:3791417/93‑1 (MQ=25)
gcgGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATG‑‑CCCTCACC‑CCG‑‑ACCC‑‑TCTCCCACAgggagagggaga < 1:4264171/93‑1 (MQ=25)
gcgGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATG‑‑CCCTCACC‑CCG‑‑ACCC‑‑CCTCCCACAcggagcggggga > 1:4623196/1‑93 (MQ=25)
gCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATG‑‑CCCTCACC‑CCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGGAGaaaa < 2:476662/93‑1 (MQ=21)
gCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATG‑‑CCCTCACC‑CCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGGAGaaaa < 2:4507182/93‑1 (MQ=21)
cTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATG‑‑CCCTCACC‑CCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGGAGAAAac < 2:2715881/93‑1 (MQ=21)
cTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATG‑‑CCCTCACC‑CCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGGAGAAAac < 1:2579504/93‑1 (MQ=21)
tataTGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATG‑‑GCCCCCCC‑CCC‑‑ACCC‑‑CCTCCCCCCCGGAGAGGGAGgaaaaa > 2:4620486/1‑91 (MQ=255)
tataTGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATG‑‑CCCTCACC‑CCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGGAGAAAaca < 1:3395608/93‑1 (MQ=21)
tataTGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATG‑‑CCCTCACC‑CCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGGAGAAAaca < 1:937925/93‑1 (MQ=21)
tataTGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATG‑‑CCCTCACC‑CCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGGAGAAAaca < 2:837859/93‑1 (MQ=21)
atatGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATG‑‑CCCTCACC‑CCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGGAGAAAacac < 2:570964/93‑1 (MQ=21)
atGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATG‑‑CCCTCACC‑CCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGGAGAAAACACTc < 1:2725439/93‑1 (MQ=21)
tGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGGCCCCACTCC‑CCC‑‑C‑‑C‑‑CCTCCCACCCCGCGAAGGAGAAAAcacac‑a > 2:4168807/1‑93 (MQ=255)
tGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATG‑‑CCCCCACC‑CCC‑‑ACCC‑‑CCTCCCCCCGGGGGGGGGGGGAAACACTC‑a > 1:1454056/1‑93 (MQ=255)
gATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATG‑‑CCCTCACC‑CCG‑‑ACCC‑‑TCTCCCACCGGGAGAGGGAGAAAACACTC‑AA‑ggcc > 2:705210/1‑90 (MQ=21)
atatGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATG‑‑CCCTCACC‑CCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGGAGAAAACACTC‑AA‑ggcct < 1:1365027/93‑5 (MQ=21)
atatGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATG‑‑CCCTCACC‑CCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGGAGAAAACACTC‑AA‑ggcct < 1:2156561/93‑5 (MQ=21)
atGAAGCGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATG‑‑CCCTCACC‑CCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTtc < 2:4422825/93‑1 (MQ=18)
atGAAGCGTATTGCTGTTGCGGGTTAAGTGCGCCCTGATG‑‑CCCTCACC‑CCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTtc < 2:4218278/93‑1 (MQ=18)
atGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATG‑‑CCCTCACC‑CCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTtc < 1:2604471/93‑1 (MQ=18)
gAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATG‑‑CCCTCACC‑CCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTtctc < 2:3497452/93‑1 (MQ=18)
gAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATG‑‑CCCTCACC‑CCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTtctc < 2:1551671/93‑1 (MQ=18)
aaaCGTATTGCTTTTGCGGTTTAAGTGCGCGCTGAGG‑‑CCCTCACC‑CCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTcc < 1:497037/93‑1 (MQ=18)
aaaCGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATG‑‑CCCTCACC‑CCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTcc < 1:1021635/93‑1 (MQ=18)
aaaCGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATG‑‑CCCTCACC‑CCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTcc < 2:2060299/93‑1 (MQ=18)
aaaCGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATG‑‑CCCTCACC‑CCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTcc < 1:191149/93‑1 (MQ=18)
aaaCGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATG‑‑CCCTCACC‑CCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTcc < 1:749614/93‑1 (MQ=18)
cGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATG‑‑CCCTCACC‑CCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTgg < 2:1454695/93‑1 (MQ=18)
gTATTGCTGTTGCGGGTTAAGTGCGCGCTGATG‑‑CCCTCACC‑CCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGga < 2:2636398/93‑1 (MQ=18)
gTATTGCTGTTGCGGGTTAAGTGCGCGCTGATG‑‑CCCTCACC‑CCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGga < 2:1276195/93‑1 (MQ=18)
ttGCTGTTGCGGGTTAAGTGCGCGCTGATG‑‑CCCTCACC‑CCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGaa < 1:162991/93‑1 (MQ=18)
ttGCTGTTGCGGGTTAAGTGCGCGCTGATG‑‑CCCTCACC‑CCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGaa < 1:4495315/93‑1 (MQ=18)
ttGCTGTTGCGGGTTAAGTGCGCGCTGATG‑‑CCCTCACC‑CCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGaa < 2:3295827/93‑1 (MQ=18)
tGCTGTTGCGGGTTAAGTGCGCGCTGATG‑‑CCCTCACC‑CCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAg < 2:1612940/93‑1 (MQ=18)
cTGTTGCAGGTTAAGCGTGCGCTGATA‑‑CCACTACT‑CCG‑‑A‑‑CCGTCTCCTACAGGGAGAGGGAGAAAAAACTCGAG‑GCATGCTCCTGGAGAAGGc < 2:1596728/93‑1 (MQ=12)
tGTTGCGGGTTAAGTGCGCGCTGATG‑‑CCCTCACC‑CCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAGGcc < 1:4195381/93‑1 (MQ=18)
gTTGCGGGTTAAGTGCGCGCTGATG‑‑CCCTCACC‑CCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCt < 2:2772129/93‑1 (MQ=18)
gTTGCGGGTTAAGTGCGCGCTGATG‑‑CCCTCACC‑CCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCt < 1:4620925/93‑1 (MQ=18)
gTTGCGGGTTAAGTGCGCGCTGATG‑‑CCCTCACC‑CCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCGTCTCCTGGAGAAGGCCt < 2:760563/93‑1 (MQ=18)
ttGCGGGTTAAGTGCGCGCTGATG‑‑CCCTCACC‑CCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCtt < 1:411107/93‑1 (MQ=18)
tcGGGTTACGCGCGCTCTCATG‑‑CCCCCACC‑CCGCCC‑‑C‑‑TCTCCCACAGGGAGAGGGAGAAAACACCC‑AAGGCCTTCTCCTGGAGAAGGCCTTGc < 2:1112027/92‑1 (MQ=12)
gCGGGTTAAGTGCGCGTTGATG‑‑CCCTCACC‑CCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGc < 1:28612/93‑1 (MQ=18)
gCGGGTTAAGTGCGCGCTGATG‑‑CCCTCACC‑CCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGTCTTCTCCTGGAGAAGGCCTTGc < 1:3569633/93‑1 (MQ=18)
gCGGGTTAAGTGCGCGCTGATG‑‑CCCTCACC‑CCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGc < 1:1026310/93‑1 (MQ=18)
gCGGGTTAAGTGCGCGCTGATG‑‑CCCTCACC‑CCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGc < 1:3414100/93‑1 (MQ=18)
cGGGTTAAGTGCGCGCTGATG‑‑CCCTCACC‑CCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCt < 1:3827185/93‑1 (MQ=18)
gTTAAGTGCGCGCTGATG‑‑CCCTCACC‑CCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTAtt < 1:2287765/93‑1 (MQ=18)
ttAAGTGCGCGCTGATG‑‑CCCTCACC‑CCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTa < 2:3801561/93‑1 (MQ=18)
ttAAGTGCGCGCTGATG‑‑CCCTCACC‑CCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTa < 1:1872305/93‑1 (MQ=18)
aaGTGCGCGCTGATG‑‑CCCTCACC‑CCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGt < 2:2939972/93‑1 (MQ=18)
aaGTGCGCGCTGATG‑‑CCCTCACC‑CCG‑‑ACCC‑‑TCTACCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGt < 2:1702174/93‑1 (MQ=18)
aaGGGCGCGCTGATG‑‑CCCTCACC‑CCGGCC‑‑C‑‑TCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGt < 2:936676/93‑1 (MQ=17)
aaGGGCGCGCTGATG‑‑CCCTCACC‑CCGCCC‑‑C‑‑TCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGt < 2:2847661/93‑1 (MQ=18)
aGTGCGCGCTGGTG‑‑TCCTCACCGTCG‑‑AC‑C‑‑TCTCCGCCAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCCCCGGGAGAGGCCCTTGCTATTAgct < 2:734400/93‑3 (MQ=12)
aGTGCGCGCTGATG‑‑CCCTCCCC‑CCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGGAGAAAACCCTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGtt < 2:1228243/93‑1 (MQ=18)
aGTGCGCGCTGATG‑‑CCCTCACC‑CCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGtt < 1:376387/93‑1 (MQ=18)
aGTGCGCGCTGATG‑‑CCCTCACC‑CCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGtt < 1:504056/93‑1 (MQ=18)
aGTGCGCGCGGATG‑‑CCCTCACC‑CCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGtt < 2:2958789/93‑1 (MQ=18)
tGCGCGCTGATG‑‑CCCTCACC‑CCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGGAGAAAACACTCGAG‑GCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGc < 2:380806/93‑1 (MQ=18)
tGCGCGCTGATG‑‑CCCTCACC‑CCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGc < 2:3366499/93‑1 (MQ=21)
tGCGCGCTGATG‑‑CCCTCACC‑CCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGc < 1:3772101/93‑1 (MQ=21)
gccgcgcAGATG‑‑CCCTCCCC‑CCG‑‑ACCC‑‑TCTCCGACAGGGATAGAGAGAAAACACAC‑AAGGCCTTCTCCTGGAGAAGTCCTTGCTATTAGTTGc < 2:2475745/91‑1 (MQ=255)
cgcgcTGATG‑‑CCCTCACC‑CCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCgg < 1:3637716/93‑1 (MQ=21)
gcTGATG‑‑CCCTCACC‑CCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTAc < 1:2040369/93‑1 (MQ=21)
gcTGATG‑‑CCCTCACC‑CCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTAc < 2:1408232/93‑1 (MQ=21)
cTGATG‑‑CCCTCACC‑CCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACa < 1:940577/93‑1 (MQ=21)
gATG‑‑CCCTCACC‑CCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAgt < 1:3639552/93‑2 (MQ=25)
aTG‑‑CCCTCACC‑CCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAgta < 2:4281242/93‑3 (MQ=25)
tG‑‑CCCTCACC‑CCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTAc < 1:3936794/93‑1 (MQ=25)
cccTCACC‑CCGCCC‑‑C‑‑TCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCt < 2:1689805/93‑1 (MQ=21)
tCACC‑CCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTaa < 2:3089731/93‑1 (MQ=25)
tCACC‑CCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTaa < 2:2362953/93‑1 (MQ=25)
cACC‑CCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAat < 1:2426297/93‑1 (MQ=25)
cACC‑CCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAat < 1:814439/93‑1 (MQ=25)
cACC‑CCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAat < 1:1476726/93‑1 (MQ=25)
cACC‑CCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAat < 1:1326695/93‑1 (MQ=25)
||
TTGAGCAGGTAGGTAAGAAACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATG‑‑CCCTCACC‑CCG‑‑A‑‑C‑‑TCTCCCACAGGGAGAGGGAGAAAACACTC‑AA‑GCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAAT > NC_000913/3956999‑3957173
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
TTGAGCAGGTAGGTAAGAAACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑A‑‑CTCTCCCACAGGGAGAGGGAGAAAACACTCAA‑GCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATAT > NC_000913/3956999‑3957183
|
TTGAGCAGGTAGGTAAGAAACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑A‑‑C < SRR4302535.2533834/94‑1 (MQ=60)
TGAGCAGGTAGGTAAGAAACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑A‑‑CC < SRR4302535.1796318/94‑1 (MQ=60)
TGAGCAGGTAGGTAAGAAACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑A‑‑CC < SRR4302535.394978/94‑1 (MQ=60)
AGCAGGTAGGTAAGAAACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑A‑‑CCCT < SRR4302535.3699689/94‑1 (MQ=60)
AGCAGGTAGGTAAGAAACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑A‑‑CCCT < SRR4302535.4621490/94‑1 (MQ=60)
AGCAGGTAGGTAAGAAACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑A‑‑CCCT < SRR4302535.3753760/94‑1 (MQ=60)
AGNTAGNTAAGAAACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑A‑‑CCCTCTC < SRR4302535.1571784/94‑1 (MQ=60)
GTAGGTAAGAAACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCC < SRR4302535.2818578/94‑1 (MQ=60)
AGGTAAGAAACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCAC < SRR4302535.1110047/94‑1 (MQ=60)
AGGTAAGAAACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCAC < SRR4302535.2910318/94‑1 (MQ=60)
AGGTAAGAAACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCAC < SRR4302535.3383289/94‑1 (MQ=60)
AAGAAACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGG < SRR4302535.66877/94‑1 (MQ=60)
AGAAACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGA < SRR4302535.3144789/94‑1 (MQ=60)
GAAACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAG < SRR4302535.4224474/94‑1 (MQ=60)
GAAACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAG < SRR4302535.1781323/94‑1 (MQ=60)
GAAACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAG < SRR4302535.1987922/94‑1 (MQ=60)
AACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAG < SRR4302535.2471713/94‑1 (MQ=60)
AACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAG < SRR4302535.2735490/94‑1 (MQ=60)
ACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGG < SRR4302535.4041290/94‑1 (MQ=60)
ACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGG < SRR4302535.2015490/94‑1 (MQ=60)
CTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGG < SRR4302535.3830887/94‑1 (MQ=60)
TGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGA < SRR4302535.3499664/94‑1 (MQ=60)
GCGCGGCTATATGACAGAGATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAG < SRR4302535.2251370/94‑1 (MQ=60)
CGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGA < SRR4302535.3817558/94‑1 (MQ=60)
CGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑A‑‑Ccccctcccacacggagcggggga > SRR4302535.4654596/1‑71 (MQ=60)
GCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAA < SRR4302535.4293374/94‑1 (MQ=60)
CTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACA < SRR4302535.2598038/94‑1 (MQ=60)
TATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACAC < SRR4302535.944569/94‑1 (MQ=60)
TATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACAC < SRR4302535.3419232/94‑1 (MQ=60)
ATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACT < SRR4302535.3796752/94‑1 (MQ=60)
ATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTCA < SRR4302535.2744906/94‑1 (MQ=60)
ACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAA‑GG < SRR4302535.4096007/94‑1 (MQ=60)
ATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTT < SRR4302535.2172055/94‑1 (MQ=60)
ATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTT < SRR4302535.1374788/94‑1 (MQ=60)
ATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAAAACTCAA‑Ggtctt > SRR4302535.773751/1‑89 (MQ=60)
ATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCT < SRR4302535.992066/94‑1 (MQ=60)
ATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCT < SRR4302535.2623167/94‑1 (MQ=60)
AGGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCT < SRR4302535.3418341/94‑1 (MQ=60)
AAACGTATTGCTTTTGCGGTTTAAGTGCGCGCTGAGGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCT < SRR4302535.500524/94‑1 (MQ=35)
AAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCT < SRR4302535.192471/94‑1 (MQ=60)
AAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCT < SRR4302535.754896/94‑1 (MQ=60)
AAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCT < SRR4302535.1028894/94‑1 (MQ=60)
AACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTG < SRR4302535.850427/94‑1 (MQ=60)
GTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAG < SRR4302535.4298109/94‑1 (MQ=60)
TTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAG < SRR4302535.164129/94‑1 (MQ=60)
TTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAG < SRR4302535.4526171/94‑1 (MQ=60)
TGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCT < SRR4302535.4224090/94‑1 (MQ=60)
GTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTT < SRR4302535.4652320/94‑1 (MQ=60)
TTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTG < SRR4302535.1918212/94‑1 (MQ=60)
TTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTG < SRR4302535.413993/94‑1 (MQ=60)
GCGGGTTAAGTGCGCGTTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCT < SRR4302535.28835/94‑1 (MQ=60)
GCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGTCTTCTCCTGGAGAAGGCCTTGCT < SRR4302535.3594388/94‑1 (MQ=49)
GCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCT < SRR4302535.1033598/94‑1 (MQ=60)
GCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCT < SRR4302535.3437853/94‑1 (MQ=60)
CGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTA < SRR4302535.3853585/94‑1 (MQ=60)
GTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTA < SRR4302535.2304106/94‑1 (MQ=60)
TTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAG < SRR4302535.2489125/94‑1 (MQ=60)
TTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAG < SRR4302535.1244922/94‑1 (MQ=60)
TTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAG < SRR4302535.1885794/94‑1 (MQ=60)
AAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTT < SRR4302535.2613536/94‑1 (MQ=60)
AGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTG < SRR4302535.507579/94‑1 (MQ=60)
AGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTG < SRR4302535.378999/94‑1 (MQ=60)
GTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGC < SRR4302535.238311/94‑1 (MQ=60)
TGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCG < SRR4302535.3798121/94‑1 (MQ=60)
GCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGG < SRR4302535.687546/94‑1 (MQ=60)
CGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGT < SRR4302535.3662921/94‑1 (MQ=60)
GCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACA < SRR4302535.2055064/94‑1 (MQ=60)
CTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAG < SRR4302535.947233/94‑1 (MQ=60)
CGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGT < SRR4302535.4630892/94‑1 (MQ=60)
GATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTA < SRR4302535.3664766/94‑1 (MQ=60)
TGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACC < SRR4302535.3963648/94‑1 (MQ=60)
CGCCCTCCCCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACC < SRR4302535.1416188/94‑1 (MQ=60)
CTCACCCCGCCC‑‑CTCTCCCACAGGGAGAGGTAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAA < SRR4302535.2575898/94‑1 (MQ=60)
TCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAAT < SRR4302535.3650942/94‑1 (MQ=60)
CACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATG < SRR4302535.2443779/94‑1 (MQ=60)
CACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATG < SRR4302535.1487299/94‑1 (MQ=60)
CACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATG < SRR4302535.820150/94‑1 (MQ=60)
CACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATG < SRR4302535.1336163/94‑1 (MQ=60)
CCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGAT < SRR4302535.2583125/94‑1 (MQ=60)
CCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGAT < SRR4302535.4516102/94‑1 (MQ=60)
CCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGAT < SRR4302535.3047238/94‑1 (MQ=60)
CCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGAT < SRR4302535.1747177/94‑1 (MQ=60)
CCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGATG > SRR4302535.2016223/1‑94 (MQ=60)
CCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGATGT < SRR4302535.994321/94‑1 (MQ=60)
cgaccCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTG < SRR4302535.3746950/89‑1 (MQ=60)
gccCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGAT < SRR4302535.3658686/91‑1 (MQ=60)
accCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGAT < SRR4302535.3190565/91‑1 (MQ=60)
accCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGAT < SRR4302535.1412537/91‑1 (MQ=60)
accCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGAT < SRR4302535.3608560/91‑1 (MQ=60)
C‑‑CTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGATAT > SRR4302535.2141853/1‑94 (MQ=60)
C‑‑CTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGATAT < SRR4302535.2879455/94‑1 (MQ=60)
C‑‑CTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGATAT < SRR4302535.3208651/94‑1 (MQ=60)
C‑‑CTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGATAT < SRR4302535.3707738/94‑1 (MQ=60)
ccCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAATGATGTGATA > SRR4302535.3000603/3‑94 (MQ=60)
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TTGAGCAGGTAGGTAAGAAACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑A‑‑CTCTCCCACAGGGAGAGGGAGAAAACACTCAA‑GCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATAT > NC_000913/3956999‑3957183
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| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
