Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I1 R1 1696 279.3 15874187 97.8% 15524954 93.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
JC NC_000913 3,958,260 +CCC intergenic (‑829/‑32) ppiC ← / → rep peptidyl‑prolyl cis‑trans isomerase C/rep helicase

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 395825826 (0.090)135 (0.450)
+CCC		 71/174 2.7 84.2% intergenic (‑827/‑34) ppiC/rep peptidyl‑prolyl cis‑trans isomerase C/rep helicase
?NC_000913 3958259 = 26 (0.080)intergenic (‑828/‑33) ppiC/rep peptidyl‑prolyl cis‑trans isomerase C/rep helicase

Only 100 of 156 total aligned reads displayed.

CGATTTCGGTCTTCTCTCTCTGATTTAAACATCCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTA‑CAAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/3958167‑3958258
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CCTCCCCCCGTTCGAAGATTGAGCAATACACCTATGCGTCTAAACCCCGGCCAACAACAAGCTGTCGAATTCGTTACCGGCCCCTGCCTGGT  >  NC_000913/3958259‑3958350
                                                                                             |||                                                                                            
CGATTTTGGTCTTCTCTCTCTGATTTAAACATCCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTA‑CAATC                                                                                                <  1:1528992/93‑1
CGATTTCGGTCTTCTCTCTCTGATTTAAACATCCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTA‑CAATC                                                                                                >  2:4501039/1‑93
CGATTTCGGTCTTCTCTCTCTGATTTAAACATCCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTA‑CAATC                                                                                                <  1:1753295/93‑1
CGATTTCGGTCTTCTCTCTCTGATTTAAACATCCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTA‑CAATC                                                                                                <  2:5417487/93‑1
 tATTTCGGTCTTCTCTCTCTGATTTAAACATCCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTA‑CAATCC                                                                                               <  1:3281669/92‑1
 GATTTCGGTCTTCTCTCTCTGATTTAAACATCCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTA‑CAATCC                                                                                               <  1:2473141/93‑1
   TTTCGGTCTTCTCTCTCTGATTTAAACATCCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTA‑CAATCCCC                                                                                             <  2:3290688/93‑1
   TTTCGGTCTTCTCTCTCTGATTTAAACATCCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTA‑CAATCCCC                                                                                             >  1:512135/1‑93
   TTTCGGTCTTCTCTCTCTGATTTAAACATCCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTA‑CAATCCCC                                                                                             <  1:4714380/93‑1
    TTCGGTCTTCTCTCTCTGATTTAAACATCCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTA‑CAATCCCCC                                                                                            <  1:1219260/93‑1
    TTCGGTCTTCTCTCTCTGATTTAAACATCCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTA‑CAATCCCCC                                                                                            >  2:4686781/1‑93
     TCGGTCTTCTCTCTCTGATTTAAGCATCCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTA‑CAATCCCCCc                                                                                           <  2:2029018/93‑2
     TCGGTCTTCTCTCTCTGATTTAAACATCCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTA‑CAATCCCCCc                                                                                           <  1:1162994/93‑2
     TCGGTCTTCTCTCTCTGATTTAAACATCCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTA‑CAATCCCCCc                                                                                           <  2:6068436/93‑2
     TCGGTCTTCTCTCTCTGATTTAAACATCCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTA‑CAATCCCCCc                                                                                           <  1:1097257/93‑2
     TCGGTCTTCTCTCTCTGATTTAAACATCCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTA‑CAATCCCCCc                                                                                           <  2:1265409/93‑2
      tGGTCTTCTCTCTCTGATTTAAACATCCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTA‑CAATCCCCCcc                                                                                          <  1:1219795/92‑3
        GTCTTCTCTCTCTGATTTAAACATCCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTA‑CAATCCCCCCCCC                                                                                        >  2:2794130/1‑93
        GTCTTCTCTCTCTGATTTAAACATCCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTA‑CAATCCCCCCCCC                                                                                        <  1:6162078/93‑1
        GTCTTCTCTCTCTGATTTAAACATCCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTA‑CAATCCCCCCCCC                                                                                        >  2:7655162/1‑93
        GTCTTCTCTCTCTGATTTAAACATCCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTA‑CAATCCCCCCCCC                                                                                        >  1:2381237/1‑93
         TCTTCTCTCTCTGATTTAAACATCCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTA‑CAATCCCCCCCCCC                                                                                       >  2:50587/1‑93
          CTTCTCTCTCTGATTTAAACATCCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTA‑CAATCCCCCCCCCCC                                                                                      >  2:1210607/1‑93
          CTTCTCTCTCTGATTTAAACATCCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTA‑CAATCCCCCCCCCCC                                                                                      >  2:7402511/1‑93
           TTCTCTCTCTGATTTAAACATCCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTA‑CAATCCCCCCCCCCCC                                                                                     >  2:1835499/1‑93
            TCTCTCTCTGATTTAAACATCCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTA‑CAATCCCCCCCCCCCCG                                                                                    >  1:3672045/1‑93
             CTCTCTCTGATTTAAACATCCGCAGCCAACCGGTTAGCGGCTTACCCGCGGGCACATTCAAATGCCATTCTGCTA‑CAATCCCCC‑CCCCCCGTT                                                                                  <  2:6931836/93‑1
             CTCTCTCTGATTTAAACATCCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTA‑CAATCCCCCCCCCCCCcc                                                                                   >  1:5915351/1‑91
             CTCTCTCTGATTTAAACATCCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTA‑CAATCCCCC‑CCCCCCGTT                                                                                  <  2:2976629/93‑1
               CTCTCTGATTTAAACATCCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTA‑CAATCCCCCCCCCCCCttca                                                                                 >  1:2549567/1‑89
               CTCTCTGATTTAAACATCCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTA‑CAATCCCCCCCCCCCCtcca                                                                                 >  2:591349/1‑89
                cctgTGATTTAAACACCCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTA‑CA‑‑CCCCCCCCCCCCGTTCGAA                                                                              <  1:1863610/89‑1
                TCTCTGATTTAAACATCCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTGTGCTA‑CAATCCCC‑‑CCCCCCGTTCGAA                                                                              >  1:4476961/1‑93
                  TCTGATTTAAACATCCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTA‑CAATCCCCCCCCCCCCGTGCGAA                                                                              >  1:4134340/1‑93
                  TCTGATTTAAACATCCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTA‑CAATCCCCCCCCCCCCCTGCGAA                                                                              >  1:3495696/1‑93
                   CTGATTTAAACATCCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTA‑CAATCCCCC‑CCCCCCGCTCCAAGA                                                                            >  2:425279/1‑93
                      ATTTAAACATCCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTA‑CAATCCCCC‑CCCCCCGTTCGAAGATTG                                                                         >  1:7772770/1‑93
                      ATTTAAACATCCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTA‑CAATCCCCC‑CCCCCCGTTCGAAGATTG                                                                         >  2:183872/1‑93
                      ATTTAAACAACCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCCA‑CAATCCCCC‑CCCCCCGTTCGAAGATTG                                                                         <  1:5219524/93‑1
                       TTTAAACATCCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTA‑CAATCCCCC‑CCCCCCGTTCGAAGATTGA                                                                        >  1:5512673/1‑93
                        TTAAACATCCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTA‑CAATCCCCC‑CCCCCCGTTCGAAGATTGAG                                                                       <  1:5968199/93‑1
                          AAACATCCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTA‑CAATCCCCC‑CCCCCCGTTCGAAGATTGAGCA                                                                     <  2:1162428/93‑1
                            ACATCCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTA‑CAATCCCCC‑CCCCCCGTTCCAAGATTGGGCAAa                                                                   >  2:2536266/1‑92
                            ACATCCCCAGCCAACCGGTTAGCGGCTTACCCGCGGGCACATTCAAATGCGATTCTGCTA‑CAATCCCCCCCCCCCCGTTCGAAGATTGAGCAA                                                                    <  2:1925769/93‑1
                             aATCCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTA‑CAATCCCCC‑CCCCCCGTTCGAAGATTGAGCAATA                                                                  <  2:6185023/92‑1
                              ATCCGCAACCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTA‑CAATCCCCC‑CCCCCCCTTCCAAGATTGACCAcaac                                                                 >  2:5178045/1‑89
                               TCCGCCGGCAACCGGTTAGGGGCTTCACCGCGGTCACATTCAAATGCGATTCTGCTA‑CAATCCCC‑‑CCCCCCGTTCGAAGATTGAGCAATACAC                                                               <  2:5275663/93‑1
                               TCCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTA‑CAATCCCCC‑CCCCCCGTTCGAAGATTAGGCAATACc                                                                >  1:2007550/1‑92
                                  cCAGCCAACCGGGTAGCGGCCTACACGCGGTCACATTCAAATGCGATTCTGCTA‑AAAACCCCC‑CCCCCCGTTCGAAGATTGAGCAATACACCT                                                             <  2:1138757/92‑1
                                   CAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTA‑CAATCCCC‑‑CCCCCCGTTCGAAGATTGAGCAATACACCTAT                                                           <  2:5307360/93‑1
                                    cGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTA‑CAATCCCCC‑CCCCCCGTTCGAAGATTGAGCAATACACCTAT                                                           <  1:1147671/92‑1
                                     ggCAACCGGGTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTA‑CAAACCCCCCCCCCCCGTTCGAAGATTGAGCAATACACCTAT                                                           <  2:477254/91‑1
                                       CAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTA‑CAATCCCC‑‑CCCCCCGCTCTAAGAATGAGCCATAAACCTATGCGT                                                       >  1:3287429/1‑93
                                          CCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTA‑CAATCCCC‑‑CCCCCCGTTCGAAGATTGAGCAATACACCTATGCGTCTA                                                    <  1:7152942/93‑1
                                            GGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTA‑CAATCCCC‑‑CCCCCCGTTCGAAGATTGAGCAATACACCTATGCGTCTAAA                                                  <  2:6512869/93‑1
                                            GGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTA‑CAATCCCC‑‑CCCCCCGTTCGAAGATTGAGCAATACACCTATGCGTCTAAA                                                  <  1:4581352/93‑1
                                            GGTTAGCGGCTTACACGCCGTCACATTCAAATGCGATTCTGCTA‑CAATCCCCC‑CCCCCCGTTCGAAGATTGAGCAATACACCTATGCGTCTAA                                                   <  1:4121937/93‑1
                                              gTAGCGGCTTACCCGCGGTCACATTCAAATGCGATTCTGCTA‑CAATCCCCC‑CCCCCCGTTCGAAGATTGAGCAATACACCTATGCGTCTAAAC                                                 <  2:3660474/92‑1
                                               TAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTA‑CAATCCCC‑‑CCCCCCGTTCGAAGATTGAGCAATACACCTATGCGTCTAAACCC                                               <  1:5731188/93‑1
                                               TAGCGGCTTACACCCGGTGCCATTCAAATGCCTTTCCGCTT‑CAATCCCCC‑CCCCCCGTTCGAAGATTGAGCAATACACCTATGCGTCTAAACC                                                <  1:6245100/93‑1
                                                   GGCTTACACGCGGTCACATTCAAATGCGATTCTGCTA‑CAATCCCCC‑CCCCCCGTTCGACGATTGAGAAATACACCTCACCGCCTAAACCCCGc                                            >  1:4047316/1‑92
                                                   GGCTTACACGCGGTCACATTCAAATGCGATTCTGCTA‑CAATCCCC‑‑CCCCCCGTTCGAAGATTGAGCAATACACCTATGCGTCTAAACCCCGGC                                           >  2:6298140/1‑93
                                                       TACCCGCGGTCCCATTCAAATGCGAGTCTGCTA‑CAATCCCCC‑CCCCCCGTTCGAAGATTGAGCAATACACCTATGCGTCTAAACCCCGGCCAA                                        <  2:2352711/93‑1
                                                          cccCGGGCACATTCAAATGCGAATCTTCTT‑CAA‑CCCCCCCCCCCCGTTCGAAGATTGAGCAATACACCTATGCGTCTAAACCCCGGCCAACAA                                     <  1:2729443/90‑1
                                                            cgGGTCACATTCAAATGCGATTCTTCTA‑CAATCCCC‑‑CCCCCCGTTCGAAGATTGAGCAATACACCTATGCGTCTAAACCCCGGCCAACAACAA                                  <  1:1369591/91‑1
                                                               GTCACATTCAAATGCGATTCTGCTA‑CAATCCCCCCCCCCCCGTTCGAAAATTGAGCAATACACCTATGCGTCTAAACCCCCGCCAACAACAAa                                 >  1:7547704/1‑92
                                                               GTCACATACAAATGCGATTCTGCTA‑CAATCCCCC‑CCCCCCGTTCGAAGATTGAGCAATACACCTATGCGTCTAAACCCCGGCCAACAACAAGC                                <  1:4676234/93‑1
                                                                TCAAATTCAAAGGCGATTCCGCTA‑AAATCCCCC‑CCCCCCGTTCGAAGATTGAGCAATACACCTATGCGTCTAAACCCCGGCCAACAACAAGCT                               <  2:4083461/93‑1
                                                                 caaATTCAAATGCGATTCTGCTA‑CAATCCCCC‑CCCCCCGTTCGAAGATTGAGCAATACACCTATGCGTCTAAACCCCGGCCAACAACAAGCTG                              <  2:7547229/90‑1
                                                                  cccTTCAAATGCGATTCTTCTC‑CAAACCCCCCCCCCCCGTTCGAAGATTGAGCAATACACCTATGCGTCTAAACCCCGGCCAACAACAAGCTG                              <  2:6101619/90‑1
                                                                  agATTCAAGTGCGATTCTGCAA‑CAATCCCC‑‑CCCCCCGTTCGAAGATTGAGCAATACACCTATGCGTCTAAACCCCGGCCAACAACAAGCTGTC                            <  2:67952/91‑1
                                                                  ACATTCAAATGCGATTCTGCTA‑CAATCCCC‑‑CCCCCCGTTCGAAGATTGTGCAATAAACCTATGCGTCTAAAACCCCGCCACCAACAAGCactc                            >  1:3219014/1‑89
                                                                  ACATTCAAAGGCGATTCTTCTT‑CAATCCCCC‑CCCCCCGTTCGAAGATTGAGCAATACCCCTATGCGTCTAAACCCCGGCCAACAACAAGCTGT                             <  1:1051921/93‑1
                                                                      TCAAATGCGATTCTCCTA‑CAATCCCCC‑CCCCCCGTTCGAAGATTGAGCAATACACCTATGCGTCTAAACCCCGGCCAACAACAAGCTGTCGAA                         <  1:7499695/93‑1
                                                                       tAAATGCGATTCTGCTA‑CAAACCCCC‑CCCCCCGTTCGAAGATTGAGCAATACACCTATGCGTCTAAACCCCGGCCAACAACAAGCTGTCGAAT                        <  1:6892942/92‑1
                                                                       CAAATGCGATTCTGCTA‑CAATCCCCC‑CCCCCCGTTCGAAGATTGAGCAATACACCTATGCGTCTAAACCCCGGCCAACAACAAGCTGTCGAAT                        <  1:3326921/93‑1
                                                                        AAAAGCGATTCTTCCACCAACCCCCCCCCCCCCGTTCGAAGATTGAGCAATACACCTATGCGTCTAAACCCCGGCCAACAACAAGCTGTCGAA                         <  1:5037843/93‑1
                                                                         AATGCGATTCTGCTA‑CAACCCCCCCCCCCCCGTTCGAAGATTGAGCAATACACCTATGCGTCTAAACCCCGGCCAACAACAAGCTGTCGAATT                       <  1:2616049/93‑1
                                                                         AATGCGATTCTGCTA‑CAA‑CCCCCCCCCCCCGTTCGAAGATTGAGCAATACACCTATGCGTCTAAACCCCGGCCAACAACAAGCTGTCGAATTC                      <  2:7596806/93‑1
                                                                            GCGGTTCTGCTA‑CAATCCCC‑‑CCCCCCGTTCGAAGATTGAGCAATACACCTATGCGTCTAAACCCCGGCCAACAACAAGCTGTCGAATTCGTTA                  <  1:4388851/93‑1
                                                                             CGATTCTGCTC‑CAAACCCCC‑CCCCCCGTTCGAAGATTGAGCAATACACCTATGCGTCTAAACCCCGGCCAACAACAAGCTGTCGAATTCGTTA                  <  2:4157316/93‑1
                                                                             CGATTCTGCTA‑CAATCCCC‑‑CCCCCCGTTCGAAGATTGAGCAATACACCTATGCGTCTAAACCCCGGCCAACAACAAGCTGTCGAATTCGTTAC                 <  1:1904751/93‑1
                                                                              GATTCTGCTA‑CAATCCCCC‑CCCCCCGTTCGAAGATTGAGCAATACACCTATGCGTCTAAACCCCGGCCAACAACAAGCTGTCGAATTCGTTAC                 <  2:4915226/93‑1
                                                                              GATTCTGCTA‑CAATCCCCC‑CCCCCCGTTCGAAGATTGAGCAATACACCTATGCGTCTAAACCCCGGCCAACAACAAGCTGTCGAATTCGTTAC                 <  2:7431091/93‑1
                                                                                TTCTGCTA‑CAATCCCCC‑CCCCCCGTTCGAAGATTGAGCAATACACCTATGCGTCTAAACCCCGGCCAACAACAAGCTGTCGAATTCGTTACCG               <  1:4313123/93‑1
                                                                                  CTGCTA‑CAATCCCCC‑CCCCCCGTTCGAAGATTGAGCAATACACCTATGCGTCTAAACCCCGGCCAACAACAAGCTGTCGAATTCGTTACCGGC             <  1:640378/93‑1
                                                                                    tCTA‑CAATCCCC‑‑CCCCCCGTTCGAAGATTGAGCAATACACCTATGCGTCTAAACCCCGGCCAACAACAAGCTGTCGAATTCGTTACCGGCCCC          <  1:4990507/92‑1
                                                                                    gccA‑CAACCCCCCCCCCCCCGTTCGAAGATTGAGCAATACACCTATGCGTCTAAACCCCGGCCAACAACAAGCTGTCGAATTCGTTACCGGCC            <  1:7384807/90‑1
                                                                                     CTA‑CAATCCCCC‑CCCCCCGTTCGAAGATTGAGCAATACACCTATGCGTCTAAACCCCGGCCAACAACAAGCTGTCGAATTCGTTACCGGCCCC          <  1:3407803/93‑1
                                                                                     CTA‑CAATCCCC‑‑CCCCCCGTTCGAAGATTGAGCAATACACCTATGCGTCTAAACCCCGGCCAACAACAAGCTGTCGAATTCGTTACCGGCCCCT         <  1:6880447/93‑1
                                                                                      TA‑CAATCCCC‑‑CCCCCCGTTCGAAGATTGAGCAATAAACCTATGCGTCTAAACCCCGGCCAACAAAAAGCTGTCGAAATCGTTACCGGCCCCTc        >  2:5121607/1‑92
                                                                                          cccCCCCCCCCCCCCGTTCGAAGATTGAGCAATACACCTATGCGTCTAAACCCCGGCCAACAACAAGCTGTCGAATTCGTTACCGGCCCCTGC       <  1:2253673/90‑1
                                                                                           acCCCCCCCCCCCCGTTCGAAGATTGAGCAATACACCTATGCGTCTAAACCCCGGCCAACAACAAGCTGTCGAATTCGTTACCGGCCCCTGCC      <  2:1536022/91‑1
                                                                                              CCCCCCCCCCCGTTCGAAGATTGAGCAATACACCTATGCGTCTAACCCCCGGCCAACAACAAGCTGTCGAATTCGTTACCGGCCCCTGCCTGG   <  1:7169992/93‑1
                                                                                              CCCCCCCCCCCGTTCGAAGATTGAGCAATACACCTATGCGTCTAAACCCCGGCCAACAACAAGCTGTCGAATTCGTTACCGGCCCCTGCCTGG   <  2:4684170/93‑1
                                                                                              CCCCCCCCCCCGTTCGAAGATTGAGCAATACACCTATGCGTCTAAACCCCGGCCAACAACAAGCTGTCGAATTCGTTACCGGCCCCTGCCTGG   <  2:2098663/93‑1
                                                                                              CCCCCCCCCCCGTTCGAAGATTGAGCAATACACCTATGCGTCTAAACCCCGGCCAACAACAAGCTGTCGAATTCGTTACCGGCCCCTGCCTGG   <  2:2098662/93‑1
                                                                                              CCCCCCCCCCCGTTCGAAGATTGAGCAATACACCTATGCGTCTAAACCCCGGCCAACAACAAGCTGTCGAATTCGTTACCGGCCCCTGCCTGG   <  2:5882416/93‑1
                                                                                               CCCCCCCCCCGTTCGAAGATTGAGCAATACACCTATGCGTCTAAACCCCGGCCAACAACAAGCTGTCGAATTCGTTACCGGCCCCTGCCTGGT  <  2:4786187/93‑1
                                                                                               CCCCCCCCCCGTTCGAAGATTGAGCAATACACCTATGCGTCTAAACCCCGGCCAACAACAAGCTGTCGAATTCGTTACCGGCCCCTGCCTGGT  <  1:7848750/93‑1
                                                                                             |||                                                                                            
CGATTTCGGTCTTCTCTCTCTGATTTAAACATCCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTA‑CAAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/3958167‑3958258
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CCTCCCCCCGTTCGAAGATTGAGCAATACACCTATGCGTCTAAACCCCGGCCAACAACAAGCTGTCGAATTCGTTACCGGCCCCTGCCTGGT  >  NC_000913/3958259‑3958350

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.

GATK/CNVnator alignment

BRESEQ :: bam2aln output
CGATTTCGGTCTTCTCTCTCTGATTTAAACATCCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTAC‑A‑A‑‑‑T‑‑‑CCTCCCCCCGTTCGAAGATTGAGCAATACACCTATGCGTCTAAACCCCGGCCAACAACAAGCTGTCGAATTCGTTACCGGCCCCTGCCTGGTGCT  >  NC_000913/3958167‑3958353
                                                                                                     |                                                                                             
CGATTTTGGTCTTCTCTCTCTGATTTAAACATCCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTAC‑A‑A‑‑‑T‑‑‑CC                                                                                               <  SRR4302543.1542707/94‑1 (MQ=60)
CGATTTCGGTCTTCTCTCTCTGATTTAAACATCCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTAC‑A‑A‑‑‑T‑‑‑CC                                                                                               <  SRR4302543.1768957/94‑1 (MQ=60)
CGATTTCGGTCTTCTCTCTCTGATTTAAACATCCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTAC‑A‑A‑‑‑T‑‑‑CC                                                                                               >  SRR4302543.7118041/1‑94 (MQ=60)
 TATTTCGGTCTTCTCTCTCTGATTTAAACATCCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTAC‑A‑A‑‑‑T‑‑‑CCC                                                                                              <  SRR4302543.3311293/94‑1 (MQ=60)
 GATTTCGGTCTTCTCTCTCTGATTTAAACATCCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTAC‑A‑A‑‑‑T‑‑‑CCC                                                                                              <  SRR4302543.3311294/94‑1 (MQ=60)
 GATTTCGGTCTTCTCTCTCTGATTTAAACATCCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTAC‑A‑A‑‑‑T‑‑‑CCC                                                                                              <  SRR4302543.1272019/94‑1 (MQ=60)
 GATTTCGGTCTTCTCTCTCTGATTTAAACATCCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTAC‑A‑A‑‑‑T‑‑‑CCC                                                                                              <  SRR4302543.2495482/94‑1 (MQ=60)
  ATTTCGGTCTTCTCTCTCTGATTTAAACATCCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTAC‑A‑A‑‑‑T‑‑‑CCCC                                                                                             >  SRR4302543.516899/1‑94 (MQ=60)
   TTTCGGTCTTCTCTCTCTGATTTAAACATCCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTAC‑A‑A‑‑‑T‑‑‑CCCCC                                                                                            <  SRR4302543.4757456/94‑1 (MQ=60)
   TTTCGGTCTTCTCTCTCTGATTTAAACATCCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTAC‑A‑A‑‑‑T‑‑‑CCCCC                                                                                            <  SRR4302543.6300283/94‑1 (MQ=60)
    TTCGGTCTTCTCTCTCTGATTTAAACATCCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTAC‑A‑A‑‑‑T‑‑‑CCCCCC                                                                                           <  SRR4302543.1230220/94‑1 (MQ=60)
     TCGGTCTTCTCTCTCTGATTTAAACATCCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTTTGCTAC‑A‑A‑‑‑T‑‑‑CCccctc                                                                                          >  SRR4302543.5319446/1‑89 (MQ=60)
     TCGGTCTTCTCTCTCTGATTTAAACATCCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTAC‑A‑A‑‑‑T‑‑‑CCCCCCC                                                                                          <  SRR4302543.1173581/94‑1 (MQ=60)
     TCGGTCTTCTCTCTCTGATTTAAACATCCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTAC‑A‑A‑‑‑T‑‑‑CCCCCCC                                                                                          <  SRR4302543.1107136/94‑1 (MQ=60)
     TCGGTCTTCTCTCTCTGATTTAAACATCCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTAC‑A‑A‑‑‑T‑‑‑CCCCCCC                                                                                          <  SRR4302543.336748/94‑1 (MQ=60)
      TGGTCTTCTCTCTCTGATTTAAACATCCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTAC‑A‑A‑‑‑T‑‑‑CCCCCCCC                                                                                         <  SRR4302543.1230760/94‑1 (MQ=60)
       GGTCTTCTCTCTCTGATTTAAACATCCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTAC‑A‑A‑‑‑T‑‑‑CCCCCCCCC                                                                                        <  SRR4302543.1843703/94‑1 (MQ=60)
       GGTCTTCTCTCTCTGATTTAAACATCCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTAC‑A‑A‑‑‑T‑‑‑CCCCCCCCC                                                                                        >  SRR4302543.2402800/1‑94 (MQ=60)
       GGCCTTCTCTCTCTGATTTAAACATCCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTAC‑A‑A‑‑‑T‑‑‑CCTCaccgc                                                                                        >  SRR4302543.4017714/1‑89 (MQ=60)
        GTCTTCTCTCTCTGATTTAAACATCCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTAC‑A‑A‑‑‑T‑‑‑CCCCCCCCCG                                                                                       >  SRR4302543.3295107/1‑94 (MQ=60)
        GTCTTCTCTCTCTGATTTAAACATCCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTAC‑A‑A‑‑‑T‑‑‑CCCCCCCCCC                                                                                       >  SRR4302543.6028899/1‑94 (MQ=60)
        GTCTTCTCTCTCTGATTTAAACATCCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTAC‑A‑A‑‑‑T‑‑‑CCCCCCCCCC                                                                                       <  SRR4302543.6220395/94‑1 (MQ=60)
          CTTCTCTCTCTGATTTAAACATCCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAACTGCGATTCTGCTAC‑A‑T‑‑‑T‑‑‑CCCCCCCCCccc                                                                                     >  SRR4302543.7657225/1‑91 (MQ=60)
          CTTCTCTCTCTGATTTAAACATCCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTAC‑A‑A‑‑‑T‑‑‑CCCCCCCCCcct                                                                                     >  SRR4302543.7954526/1‑91 (MQ=60)
          CTTCTCTCTCTGATTTAAACATCCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTAC‑A‑A‑‑‑T‑‑‑CCCCCCCCCccc                                                                                     >  SRR4302543.4529815/1‑91 (MQ=60)
           TTCTCTCTCTGATTTAAACATCCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTAC‑A‑A‑‑‑T‑‑‑CCCCCCCCCcccg                                                                                    >  SRR4302543.3704283/1‑90 (MQ=60)
            TCTCTCTCTGATTTAAACATCCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTAC‑A‑A‑‑‑T‑‑‑CCCCCCCCCccccc                                                                                   >  SRR4302543.5969373/1‑89 (MQ=60)
            TCTCTCTCTGATTTAAACATCCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTAC‑A‑A‑‑‑T‑‑‑CCCCCCCCCGTTCG                                                                                   <  SRR4302543.6416970/94‑1 (MQ=60)
             CTCTCTCTGATTTAAACATCCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTAC‑A‑A‑‑‑T‑‑‑CCCCCCCCCccgctc                                                                                  >  SRR4302543.1225973/1‑88 (MQ=60)
             CTCTCTCTGATTTAAACATCCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTAC‑A‑A‑‑‑T‑‑‑CCCCCCCCCcccgtt                                                                                  <  SRR4302543.3538974/94‑7 (MQ=60)
              TCTCTCTGATTTAAACATCCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTAC‑A‑A‑‑‑T‑‑‑CCCCCCCCCcccttca                                                                                 >  SRR4302543.2572847/1‑87 (MQ=60)
               CTCTCTGATTTAAACATCCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTGTGCTAC‑A‑A‑‑‑TC‑‑CCCCCCCCCGTTCGAA                                                                                 >  SRR4302543.4517605/1‑94 (MQ=60)
                cctgTGATTTAAACACCCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTAC‑ACC‑‑‑C‑‑‑CCCCCCCCCGTTCGAAG                                                                                <  SRR4302543.1880352/90‑1 (MQ=60)
                TCTCTGATTTAAACATCCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTAC‑A‑A‑‑‑T‑‑‑CCCCCCCCCcctctcgaa                                                                               >  SRR4302543.4323062/1‑85 (MQ=60)
                CCTCTGATTTAAACATCCGCAGCCAACCGGGTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTAC‑A‑A‑‑‑TC‑‑CCCCCCCCCGTTCGAAG                                                                                <  SRR4302543.5236188/94‑1 (MQ=60)
                 CTCTGATTTAAACATCCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTAC‑A‑A‑‑‑T‑‑‑CCccacccccccatcccac                                                                              >  SRR4302543.5155383/1‑77 (MQ=60)
                 CTCTGATTTAAACATCCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTAC‑A‑A‑‑‑T‑‑‑CCCCCCCCCcccgtgcgaa                                                                              >  SRR4302543.4171650/1‑84 (MQ=60)
                 CTCTGATTTAAACATCCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTAC‑A‑A‑‑‑T‑‑‑CCCCCCCCCcccctgcgaa                                                                              >  SRR4302543.3526974/1‑84 (MQ=60)
                    TGATTTAAACATCCGCAGCCAACCGGTTAGCGGCTTACACGCGCTCACATTCAAATGCGATTCTGCTAC‑A‑A‑‑‑TC‑‑CCCCCCCCCGTTCGAAGATTG                                                                            >  SRR4302543.2732780/1‑94 (MQ=60)
                     GATTTAAACATCCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTAC‑A‑A‑‑‑TCC‑CCCCCCCCCGTTCGAAGATTG                                                                            >  SRR4302543.7846087/1‑94 (MQ=60)
                      ATTTAAACATCCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTAC‑A‑A‑‑‑TTC‑CCTCCCCCCctctcacaggtgg                                                                           >  SRR4302543.6206350/1‑81 (MQ=60)
                      ATTTAAACATCCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTAC‑A‑A‑‑‑TCC‑CCCCCCCCCGTTCGAAGATTGA                                                                           >  SRR4302543.5562731/1‑94 (MQ=60)
                      ATTTAAACACCCGCAGCCCACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTAC‑A‑A‑‑‑TCC‑CCCCCCCCCGTTCGAAGATTGA                                                                           <  SRR4302543.5266536/94‑1 (MQ=60)
                      ATTTAAACAACCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCCAC‑A‑A‑‑‑TCC‑CCCCCCCCCGTTCGAAGATTGA                                                                           <  SRR4302543.5266535/94‑1 (MQ=60)
                        TTAAACATCCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTAC‑A‑A‑‑‑TCC‑CCCCCCCCCGTTCGAAGATTGAGC                                                                         <  SRR4302543.6022848/94‑1 (MQ=60)
                          AAACATCCGCAGCCAACCGGTTAGCGGCTTACCCGCGGTCACATTCAAATGCGATTCTGCTAC‑A‑A‑‑‑TCCCCCCCCCCCCGTTCGAAGATTGAGCA                                                                        <  SRR4302543.5323913/94‑1 (MQ=60)
                           aaccaCCGCAGCCCACCGGGTAGCGGCCTACCCGCGGTCACATTCAAATGCGATTCTGCTAC‑A‑A‑‑‑TCCCCCCCCCCCCGTTCGAAGATTGAGCAA                                                                       <  SRR4302543.4190396/89‑1 (MQ=60)
                           AACATCCGCAGCCAACCGGTTCGCGGCTTACACGCGGGCACTTTCAAATGCGATTCTGCTAC‑A‑A‑‑‑TC‑‑CCCCCCCCCGTTCGAAGATTGAGCAATA                                                                     <  SRR4302543.6393310/94‑1 (MQ=60)
                           AACATCCGCAGCCAACCGGTTAGCGGCTTACACGGGGTCACATTCAAATGCGATTCTGCTAC‑A‑A‑‑‑TCCCCCCCCCCCCGTTCGAAGATTGAGCAA                                                                       <  SRR4302543.3670344/94‑1 (MQ=60)
                           AACACCCGCAGCCAGCCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTTGGCTAC‑A‑A‑‑‑TCC‑CCCCCCCCCGTTCGAAGATTGAGCAAT                                                                      <  SRR4302543.4054691/94‑1 (MQ=60)
                            acatcccgcGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTAC‑A‑A‑‑‑TCCCCCCCCCCCCGTTCGAAGATTGAGCAAT                                                                      <  SRR4302543.3974800/85‑1 (MQ=60)
                            ACATCCGCACCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTAC‑A‑A‑‑‑TC‑‑CCCCCCCCCGTTCGAAGATTGAGCAATAC                                                                    <  SRR4302543.510186/94‑1 (MQ=60)
                             CATCCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTAC‑A‑A‑‑‑T‑‑‑CCCCCCCCCcccttcgaacaatacgcaaaaa                                                                  >  SRR4302543.3110389/1‑72 (MQ=60)
                              ATCCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTAC‑A‑A‑‑‑TCC‑CCCCCCCCCGTTCGAAGATTaggcaatacc                                                                   >  SRR4302543.2025593/1‑84 (MQ=60)
                              ATCCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTAC‑A‑A‑‑‑TCC‑CCCCCCCCCCTTCGAAGATTGAGCAAaaac                                                                   >  SRR4302543.7502338/1‑90 (MQ=60)
                              ATCCCCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTAC‑A‑A‑‑‑TC‑‑CCCCCCCCCGTTCGAAGATTGAGCAATACAC                                                                  <  SRR4302543.3061086/94‑1 (MQ=60)
                                 CGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTAC‑A‑A‑‑‑T‑‑‑CCCCCCCCCcccgggggggatatgcagaaacccca                                                              >  SRR4302543.6528573/1‑68 (MQ=60)
                                    ggccaacggttgagcggcttacagggggtccaattaaaatgcattttTGCTAC‑A‑A‑‑‑C‑‑‑CCCCCCCCCGTTCGAAGATTGAGCAATACACCTATGCG                                                           <  SRR4302543.2198024/47‑1 (MQ=60)
                                    CGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTAC‑A‑A‑‑‑TCC‑CCCCCCCCCGTTCGAAGATTGAGCAATACACCTATG                                                             <  SRR4302543.1158127/94‑1 (MQ=60)
                                      ccaacccgtttgcgggtgacacagggtccCATTCAAACGCGATTCTGCTAC‑A‑AGC‑C‑‑‑CCCCCCCCCGTTCGAAGATTGAGCAATACACCTATGCG                                                           <  SRR4302543.4254695/65‑1 (MQ=47)
                                      CCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTTCTAC‑A‑A‑‑‑TCCCCCCCCCCCCGTTCGAAGATTGAGCAATACACCTATGC                                                            <  SRR4302543.4505991/94‑1 (MQ=60)
                                      CCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTAC‑A‑A‑‑‑TC‑‑CCCCCCCCCGCTCTAAGAATGAGCCATAAACCTATGCGT                                                          >  SRR4302543.3317098/1‑94 (MQ=60)
                                      CCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTAC‑A‑A‑‑‑T‑‑‑CCCCCCCCCcccatcccgagcgcacaacacactctatcga                                                         >  SRR4302543.31987/1‑63 (MQ=60)
                                       CAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTAC‑A‑A‑‑‑T‑‑‑CCCCCCCCCccgtcgcagattttgaaaaaaacaccttggcc                                                        >  SRR4302543.4755505/1‑62 (MQ=60)
                                       CAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTAC‑A‑A‑‑‑T‑‑‑CCCCCCCCCccccctttccaagataaccaaaaccctacatc                                                        >  SRR4302543.1510212/1‑62 (MQ=60)
                                       CAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTAC‑A‑A‑‑‑T‑‑‑CCCCCCCCCccccatcctgagtgaggacagacaaacatgcc                                                        >  SRR4302543.1556557/1‑62 (MQ=60)
                                        cacagggTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTAC‑A‑AAC‑C‑‑‑CCCCCCCCCGTTCGAAGATTGAGCAATACACCTATGCGTC                                                         <  SRR4302543.6551289/87‑1 (MQ=60)
                                        AACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTAC‑A‑A‑‑‑T‑‑‑CCCCCCCCCcccgctcgtagtgttaaaaaaccaccctttcgc                                                       >  SRR4302543.2319699/1‑61 (MQ=60)
                                        AACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTAC‑A‑A‑‑‑T‑‑‑CCCCCCCCCccccctaccaaaatcagaaaaaccaccaactct                                                       >  SRR4302543.5951171/1‑61 (MQ=60)
                                        AACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTAC‑A‑A‑‑‑T‑‑‑CCCCCCCCCcccccctccgcgtatgagacatacccctactcg                                                       >  SRR4302543.3470392/1‑61 (MQ=60)
                                         ACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTAC‑A‑A‑‑‑T‑‑‑CCCCCCCCCcccctttgcgagttgatacaaaaaccccttgcgc                                                      >  SRR4302543.4569847/1‑60 (MQ=60)
                                         ACC‑GTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTAC‑A‑A‑‑‑TCCCCCCCCCCCCGTTCGAAGATTGAGCAATACACCTATGCGTCT                                                        <  SRR4302543.5926313/94‑1 (MQ=60)
                                          CCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTAC‑A‑A‑‑‑TC‑‑CCCCCCCCCGTTCGAAGATTGAGCAATACACCTATGCGTCTAA                                                      <  SRR4302543.7222461/94‑1 (MQ=60)
                                            GGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTAC‑A‑A‑‑‑TC‑‑CCCCCCCCCGTTCGAAGATTGAGCAATACACCTATGCGTCTAAAC                                                    <  SRR4302543.4622984/94‑1 (MQ=60)
                                            GGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTAC‑A‑A‑‑‑T‑‑‑CCcctccccccacttcttcattcagcaagatacctctctgtctgac                                                   >  SRR4302543.6561785/1‑50 (MQ=60)
                                            GGTTAGCGGCTTACACGCCGTCACATTCAAATGCGATTCTGCTAC‑A‑A‑‑‑TCC‑CCCCCCCCCGTTCGAAGATTGAGCAATACACCTATGCGTCTAAA                                                     <  SRR4302543.4159092/94‑1 (MQ=60)
                                            CGTTAGCGGCTTACACGCGGGCACATTCAAATGCGATTCTGCTAC‑A‑A‑‑‑TCC‑CCCCCCCCCGTTCGAAGATTGAGCAATACACCTATGCGTCTAAA                                                     <  SRR4302543.4159093/94‑1 (MQ=60)
                                             GTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTAC‑A‑A‑‑‑T‑‑‑CCACCCCCCccagtcgaacactgagcacaacacctatggagcgacac                                                  >  SRR4302543.1385243/1‑56 (MQ=60)
                                               tgcgggcttcaccgcggtccaATTCAATTGCGATTCTGCTCC‑A‑A‑‑‑G‑‑‑CCCCCCCCCGTTCGAAGATTGAGCAATACACCTATGCGTCTAAACCCCG                                                <  SRR4302543.2798479/73‑1 (MQ=60)
                                               tagcggtttcaacggggccccatccaaatccaATTCTGCTAC‑A‑A‑‑‑C‑‑‑CCCCCCCCCGTTCGAAGATTGAGCAATACACCTATGCGTCTAAACCCCG                                                <  SRR4302543.2798482/62‑1 (MQ=60)
                                               TAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTAC‑A‑A‑‑‑TC‑‑CCCCCCCCCGTTCGAAGATTGAGCAATACACCTATGCGTCTAAACCCC                                                 <  SRR4302543.5783481/94‑1 (MQ=60)
                                               TAGCGGCTTACACCCGGTGCCATTCAAATGCCTTTCCGCTTC‑A‑A‑‑‑TCC‑CCCCCCCCCGTTCGAAGATTGAGCAATACACCTATGCGTCTAAACCC                                                  <  SRR4302543.6304014/94‑1 (MQ=42)
                                                AGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTAC‑A‑A‑‑‑TC‑‑CCCCCCCCCGTTCCAAGGATTAGCAATACACCTATGCGTCTAAACCCCG                                                >  SRR4302543.730220/1‑94 (MQ=60)
                                                AGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTAC‑A‑A‑‑‑TC‑‑CCCCCCCCCCTTTGAAGATTTACCCATCAACCTATGCGTCTAAACCCCG                                                >  SRR4302543.541789/1‑94 (MQ=50)
                                                AGCCGCTTACACGCGGTCACATTCAAATGCGATTCTGCTACAA‑A‑‑‑C‑‑‑CCCCCCCCCGTTCGAAGATTGAGCAATACACCTATGCGTCTAAACCCCG                                                <  SRR4302543.6323361/94‑1 (MQ=60)
                                                 GCGGCTTACCCGCGGTCACATTCAAATTCGATTCTGCTAC‑A‑A‑‑‑TCC‑CCCCCCCCCGTTCGAAGATTGAGCAATACACCTATGCGTCTAAACCCCG                                                <  SRR4302543.19613/94‑1 (MQ=60)
                                                  CGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTAC‑A‑A‑‑‑TCC‑CCCCCCCCCGTTCGACGATTGAGAAATACACCTcaccgcctaaaccccgc                                               >  SRR4302543.4083535/1‑77 (MQ=60)
                                                   GGCTTACACGCGGTCACATTCAAATGCGATTCTGCTAC‑A‑A‑‑‑T‑‑‑CCCCCCCCCccgtttgaggattaggaaaaacacctatgcgcgtaacacccccc                                            >  SRR4302543.1638443/1‑50 (MQ=60)
                                                    GCTTACACGCGGTCACATTCAAATGCGATTCTGCTAC‑A‑A‑‑‑TC‑‑CCCCCCCCCGTTCGAAAATTGAGCAATACACCTACGCGTCTAAACCCCCGCCA                                            >  SRR4302543.1627521/1‑94 (MQ=60)
                                                     CTTACACGCGGTCACATTCAAATGCGATTCTGCTAC‑A‑A‑‑‑TCC‑CCCCCCCCCGTTCGACAAATGAGCAAAACACCATTGTGTCTTAACCCCGGCCA                                            >  SRR4302543.5354523/1‑94 (MQ=40)
                                                          ACGCGGTCACATTCAAATGCGATTCTGCCAC‑A‑A‑‑‑TCC‑CCCCCCCCCGTTCGAAGATTGAGCAATACACCTATGCGTCTAAACCCCGGCCAACAAC                                       <  SRR4302543.3773847/94‑1 (MQ=60)
                                                            cgGGTCACATTCAAATGCGATTCTTCTAC‑A‑A‑‑‑TC‑‑CCCCCCCCCGTTCGAAGATTGAGCAATACACCTATGCGTCTAAACCCCGGCCAACAACAAG                                    <  SRR4302543.1381886/92‑1 (MQ=60)
                                                              GGTCACATTCAAATGCGATTCTGCTAC‑A‑A‑‑‑TCCCCCCCCCCCCGTTCGAAAATTGAGCAATACACCTATGCGTCTAAACCCCCGCCAACAACAAA                                    >  SRR4302543.7619604/1‑94 (MQ=60)
                                                              GGTCACATTCAAATGCGATTCTGCTAC‑A‑A‑‑‑TCC‑CCCCCCCCCGTTCGAAGATTGGGAAATAAACCTATGCGTCTAAACCCCGccaaacacaaacc                                   >  SRR4302543.6491955/1‑81 (MQ=60)
                                                              GGTCACATTCAAATGCGATTCTGCTAC‑A‑A‑‑‑T‑‑‑CCCCCCCCCcccctcggaaagtgtggcacaccactttgcgtccaacacccgcgccacacccaag                                 >  SRR4302543.7619733/1‑39 (MQ=60)
                                                               GTCACATACAAATGCGATTCTGCTAC‑A‑A‑‑‑TCC‑CCCCCCCCCGTTCGAAGATTGAGCAATACACCTATGCGTCTAAACCCCGGCCAACAACAAGCT                                  <  SRR4302543.4718868/94‑1 (MQ=60)
                                                                TCACATTCAAATGCGATTCTGCTAC‑A‑A‑‑‑TCC‑CCCCCCCCCGTTCGAAGATTGAGCAATACACCTATGCGTCTAAACCCCGGCCAACAACAAGCTG                                 <  SRR4302543.6699419/94‑1 (MQ=60)
                                                                 CACATTCAAATGCGATTCTGCTAC‑A‑A‑‑‑TC‑‑CCCCCCCCCGTTCGAAGATTGTGCAATAAACCTATGCGTCTAAAACCCCGCCACCAACAAGCactc                               >  SRR4302543.3248101/1‑90 (MQ=60)
                                                                 CACATTCAAATGCGATTCTGCTAC‑A‑A‑‑‑T‑‑‑CCCCCCCCCcccttggagatttgccaaaaaccacttgccgtcgaanccccggccacaaaaaagaatc                              >  SRR4302543.458175/1‑36 (MQ=60)
                                                                 CACATTCAAATGCGATTCTGCTAC‑A‑A‑‑‑T‑‑‑CCCCCCCCCcccttcgcacatctaaacaaaaacccaagcgctcaaaacccccccccacaaacaacag                              >  SRR4302543.2014513/1‑36 (MQ=60)
                                                                 CACATTCAAATGCGATTCTGCTAC‑A‑A‑‑‑T‑‑‑CCCCCCCCCcccgttgcgggattggccaatacccctacggtttcaaaccccgccacaacaaaacgcg                              >  SRR4302543.5021779/1‑36 (MQ=60)
                                                                 CACATTCAAATGCGATTCTGCTAC‑A‑A‑‑‑T‑‑‑CCCCCCCCCccccgggcgagagaggaaaacaaagaaacggtgtacacccgaccacaacaaaaccacg                              >  SRR4302543.1539994/1‑36 (MQ=60)
                                                                 CACATTCAAATGCGATTCTGCTAC‑A‑A‑‑‑T‑‑‑CCCCCCCCCcccccttcagcattgacgaaaaaacacacacgtctaacccccggccaacacaaacagt                              >  SRR4302543.4783414/1‑36 (MQ=60)
                                                                  ACATTCAAAGGCGATTCTTCTTC‑A‑A‑‑‑TCC‑CCCCCCCCCGTTCGAAGATTGAGCAATACCCCTATGCGTCTAAACCCCGGCCAACAACAAGCTGTC                               <  SRR4302543.1061339/94‑1 (MQ=60)
                                                                      TCAAATGCGATTCTGCTAC‑A‑A‑‑‑TCC‑CCCCCCCCCGTTCGAAGATTGAGCAATAAACCTATGCGTCTAAACCCCGCCCAACAACAAGCTGTCGAAT                           >  SRR4302543.2679168/1‑94 (MQ=60)
                                                                      TCAAATGCGATTCTCCTAC‑A‑A‑‑‑TCC‑CCCCCCCCCGTTCGAAGATTGAGCAATACACCTATGCGTCTAAACCCCGGCCAACAACAAGCTGTCGAAT                           <  SRR4302543.7571414/94‑1 (MQ=60)
                                                                       TAAATGCGATTCTGCTAC‑A‑AAC‑C‑‑‑CCCCCCCCCGTTCGAAGATTGAGCAATACACCTATGCGTCTAAACCCCGGCCAACAACAAGCTGTCGAATT                          <  SRR4302543.6957741/94‑1 (MQ=60)
                                                                       CAAATGCGATTCTGCTAC‑A‑A‑‑‑TCC‑CCCCCCCCCGTTCGAAGATTGAGCAATACACCTATGCGTCTAAACCCCGGCCAACAACAAGCTGTCGAATT                          <  SRR4302543.3356930/94‑1 (MQ=60)
                                                                         AATGCGATTCTGCTAC‑A‑ACCCC‑‑‑CCCCCCCCCGTTCGAAGATTGAGCAATACACCTATGCGTCTAAACCCCGGCCAACAACAAGCTGTCGAATTC                         <  SRR4302543.2639774/94‑1 (MQ=60)
                                                                         AATGCGATTCTGCTAC‑A‑A‑‑‑TCC‑CCCCCCCCCGTTCGAAGATTGAGCAAaaacaccacgcctctcaaacccggccccaaacaaactcacaaattct                        >  SRR4302543.1907084/1‑47 (MQ=60)
                                                                            GCGGTTCTGCTAC‑A‑A‑‑‑TC‑‑CCCCCCCCCGTTCGAAGATTGAGCAATACACCTATGCGTCTAAACCCCGGCCAACAACAAGCTGTCGAATTCGTTAC                    <  SRR4302543.4428639/94‑1 (MQ=60)
                                                                            GCGATTCTGCCACAA‑A‑‑‑C‑‑‑CCCCCCCCCGTTCGAAGATTGAGCAATACACCTATGCGTCTAAACCCCGGCCAACAACAAGCTGTCGAATTCGTTAC                    <  SRR4302543.5531632/94‑1 (MQ=60)
                                                                             CGATTCTGCTAC‑A‑A‑‑‑TC‑‑CCCCCCCCCGTTCGAAGATTGAGCAATACACCTATGCGTCTAAACCCCGGCCAACAACAAGCTGTCGAATTCGTTACC                   <  SRR4302543.1921896/94‑1 (MQ=60)
                                                                             CGATTCTGCTAC‑A‑A‑‑‑TC‑‑CCCCCCCCCGTTCGAAGATTGAGCAATACACCTATGCGTCTAAACCCCGGCCAACAACAAACTGTCGAATTCGTTACC                   >  SRR4302543.7500132/1‑94 (MQ=60)
                                                                              GATTCTGCTAC‑A‑A‑‑‑TC‑‑CCCCCCCCCGTTCGAAGATTGAGCAATACACCTATGCGTCTAAACCCCGGCCAACAACAAGCTGTCGAATTCGTTACCG                  <  SRR4302543.4760968/94‑1 (MQ=60)
                                                                              GATTCTGCTAC‑A‑A‑‑‑TC‑‑CCCCCCCCCGTTCGAAGATTGAGCAATAACCCTATGCGTCTAAACCCCGGCCAACAACAAGCTGCGGAATTCGTTACCG                  >  SRR4302543.7308126/1‑94 (MQ=60)
                                                                                TTCTGCTAC‑A‑A‑‑‑TCC‑CCCCCCCCCGTTCGAAGATTGAGCAATACACCTATGCGTCTAAACCCCGGCCAACAACAAGCTGTCGAATTCGTTACCGG                 <  SRR4302543.4352298/94‑1 (MQ=60)
                                                                                  CTGCTAC‑A‑A‑‑‑TCC‑CCCCCCCCCGTTCGAAGATTGAGCAATACACCTATGCGTCTAAACCCCGGCCAACAACAAGCTGTCGAATTCGTTACCGGCC               <  SRR4302543.646224/94‑1 (MQ=60)
                                                                                  CTGCTAC‑A‑A‑‑‑TC‑‑CCCCCCCCCGTTCGAAGATTGAGCAAAACACCTATGCGTCTAAACCCCGGCCAACAACAAGCTGTCGAATTCGTTCCCGCCCC              >  SRR4302543.6324609/1‑94 (MQ=60)
                                                                                     CTAC‑A‑A‑‑‑TCC‑CCCCCCCCCGTTCGAAGATTGAGCAATACACCTATGCGTCTAAACCCCGGCCAACAACAAGCTGTCGAATTCGTTACCGGCCCCT            <  SRR4302543.3438315/94‑1 (MQ=60)
                                                                                     CTAC‑A‑A‑‑‑TC‑‑CCCCCCCCCGTTCGAAGATTGAGCAATACACCTATGCGTCTAAACCCCGGCCAACAACAAGCTGTCGAATTCGTTACCGGCCCCTG           <  SRR4302543.6945190/94‑1 (MQ=60)
                                                                                      TAC‑A‑A‑‑‑T‑‑‑CCCCCCCCCGTTCGAAGATTGAGCAATACACCTATGCGTCTAAACCCCGGCCAACAACAAGCTGTCGAATTCGTTACCGGCCCCTGCC         <  SRR4302543.5102388/94‑1 (MQ=60)
                                                                                                    CCCCCCCCCGTTCGAAGATTGAGCAATACACCTATGCGTCTAAACCCCGGCCAACAACAAGCTGTCGAATTCGTTACCGGCCCCTGCCTGGTGC   <  SRR4302543.4493704/94‑1 (MQ=60)
                                                                                                    CCCCCCCCCGTTCGAAGAAGGAGCAAAACACCCATGCGGCCAAACCCCGGCCAACAACAAGCGGGCGAATACGTTACCGGCCCCcgcccggggc   >  SRR4302543.6057563/1‑84 (MQ=29)
                                                                                                     CCCCCCCCGTTCGAAGATTGAGCAATACACCTATGCGTCTAACCCCCGGCCAACAACAAGCTGTCGAATTCGTTACCGGCCCCTGCCTGGTGCT  <  SRR4302543.2779643/94‑1 (MQ=60)
                                                                                                     CCCCCCCCGTTCGAAGATTGAGCAATACACCTATGCGTCTAAACCCCGGCCAACAACAAGCTGTCGAATTCGTTACCGGCCCCTGCCTGGTGCT  >  SRR4302543.1003876/1‑94 (MQ=60)
                                                                                                     CCCCCCCCGTTCGAAGATTGAGCAATACACCTATGCGTCTAAACCCCGGCCAACAACAAGCTGTCGAATTCGTTACCGGCCCCTGCCTGGTGCT  >  SRR4302543.3442357/1‑94 (MQ=60)
                                                                                                     CCCCCCCCGTTCGAAGATTGAGCAATACACCTATGCGTCTAAACCCCGGCCAACAACAAGCTGTCGAATTCGTTACCGGCCCCTGCCTGGTGCT  >  SRR4302543.3605927/1‑94 (MQ=60)
                                                                                                     CCCCCCCCGTTCGAAGATTGAGCAATACACCTATGCGTCTAAACCCCGGCCAACAACAAGCTGTCGAATTCGTTACCGGCCCCTGCCTGGTGCT  <  SRR4302543.593807/94‑1 (MQ=60)
                                                                                                     CCCCCCCCGTTCGAAGAGTGAGCAATACACCTATGCGTCTAAACCCCGGCCAACAACAAGCTGTGGAATTCGTTACCGGCCCCTGCCTGGTGCT  <  SRR4302543.5916041/94‑1 (MQ=60)
                                                                                                     |                                                                                             
CGATTTCGGTCTTCTCTCTCTGATTTAAACATCCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTAC‑A‑A‑‑‑T‑‑‑CCTCCCCCCGTTCGAAGATTGAGCAATACACCTATGCGTCTAAACCCCGGCCAACAACAAGCTGTCGAATTCGTTACCGGCCCCTGCCTGGTGCT  >  NC_000913/3958167‑3958353

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑