Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I1 R1
|
1696 |
279.3 |
15874187 |
97.8% |
15524954 |
93.0 |
Breseq alignment
N/A
GATK/CNVnator alignment
BRESEQ :: bam2aln output
CGATTTCGGTCTTCTCTCTCTGATTTAAACATCCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTAC‑A‑A‑‑‑T‑‑‑CCTCCCCCCGTTCGAAGATTGAGCAATACACCTATGCGTCTAAACCCCGGCCAACAACAAGCTGTCGAATTCGTTACCGGCCCCTGCCTGGTGCT > NC_000913/3958167‑3958353
|
CGATTTTGGTCTTCTCTCTCTGATTTAAACATCCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTAC‑A‑A‑‑‑T‑‑‑CC < SRR4302543.1542707/94‑1 (MQ=60)
CGATTTCGGTCTTCTCTCTCTGATTTAAACATCCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTAC‑A‑A‑‑‑T‑‑‑CC < SRR4302543.1768957/94‑1 (MQ=60)
CGATTTCGGTCTTCTCTCTCTGATTTAAACATCCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTAC‑A‑A‑‑‑T‑‑‑CC > SRR4302543.7118041/1‑94 (MQ=60)
TATTTCGGTCTTCTCTCTCTGATTTAAACATCCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTAC‑A‑A‑‑‑T‑‑‑CCC < SRR4302543.3311293/94‑1 (MQ=60)
GATTTCGGTCTTCTCTCTCTGATTTAAACATCCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTAC‑A‑A‑‑‑T‑‑‑CCC < SRR4302543.3311294/94‑1 (MQ=60)
GATTTCGGTCTTCTCTCTCTGATTTAAACATCCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTAC‑A‑A‑‑‑T‑‑‑CCC < SRR4302543.1272019/94‑1 (MQ=60)
GATTTCGGTCTTCTCTCTCTGATTTAAACATCCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTAC‑A‑A‑‑‑T‑‑‑CCC < SRR4302543.2495482/94‑1 (MQ=60)
ATTTCGGTCTTCTCTCTCTGATTTAAACATCCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTAC‑A‑A‑‑‑T‑‑‑CCCC > SRR4302543.516899/1‑94 (MQ=60)
TTTCGGTCTTCTCTCTCTGATTTAAACATCCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTAC‑A‑A‑‑‑T‑‑‑CCCCC < SRR4302543.4757456/94‑1 (MQ=60)
TTTCGGTCTTCTCTCTCTGATTTAAACATCCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTAC‑A‑A‑‑‑T‑‑‑CCCCC < SRR4302543.6300283/94‑1 (MQ=60)
TTCGGTCTTCTCTCTCTGATTTAAACATCCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTAC‑A‑A‑‑‑T‑‑‑CCCCCC < SRR4302543.1230220/94‑1 (MQ=60)
TCGGTCTTCTCTCTCTGATTTAAACATCCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTTTGCTAC‑A‑A‑‑‑T‑‑‑CCccctc > SRR4302543.5319446/1‑89 (MQ=60)
TCGGTCTTCTCTCTCTGATTTAAACATCCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTAC‑A‑A‑‑‑T‑‑‑CCCCCCC < SRR4302543.1173581/94‑1 (MQ=60)
TCGGTCTTCTCTCTCTGATTTAAACATCCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTAC‑A‑A‑‑‑T‑‑‑CCCCCCC < SRR4302543.1107136/94‑1 (MQ=60)
TCGGTCTTCTCTCTCTGATTTAAACATCCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTAC‑A‑A‑‑‑T‑‑‑CCCCCCC < SRR4302543.336748/94‑1 (MQ=60)
TGGTCTTCTCTCTCTGATTTAAACATCCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTAC‑A‑A‑‑‑T‑‑‑CCCCCCCC < SRR4302543.1230760/94‑1 (MQ=60)
GGTCTTCTCTCTCTGATTTAAACATCCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTAC‑A‑A‑‑‑T‑‑‑CCCCCCCCC < SRR4302543.1843703/94‑1 (MQ=60)
GGTCTTCTCTCTCTGATTTAAACATCCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTAC‑A‑A‑‑‑T‑‑‑CCCCCCCCC > SRR4302543.2402800/1‑94 (MQ=60)
GGCCTTCTCTCTCTGATTTAAACATCCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTAC‑A‑A‑‑‑T‑‑‑CCTCaccgc > SRR4302543.4017714/1‑89 (MQ=60)
GTCTTCTCTCTCTGATTTAAACATCCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTAC‑A‑A‑‑‑T‑‑‑CCCCCCCCCG > SRR4302543.3295107/1‑94 (MQ=60)
GTCTTCTCTCTCTGATTTAAACATCCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTAC‑A‑A‑‑‑T‑‑‑CCCCCCCCCC > SRR4302543.6028899/1‑94 (MQ=60)
GTCTTCTCTCTCTGATTTAAACATCCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTAC‑A‑A‑‑‑T‑‑‑CCCCCCCCCC < SRR4302543.6220395/94‑1 (MQ=60)
CTTCTCTCTCTGATTTAAACATCCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAACTGCGATTCTGCTAC‑A‑T‑‑‑T‑‑‑CCCCCCCCCccc > SRR4302543.7657225/1‑91 (MQ=60)
CTTCTCTCTCTGATTTAAACATCCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTAC‑A‑A‑‑‑T‑‑‑CCCCCCCCCcct > SRR4302543.7954526/1‑91 (MQ=60)
CTTCTCTCTCTGATTTAAACATCCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTAC‑A‑A‑‑‑T‑‑‑CCCCCCCCCccc > SRR4302543.4529815/1‑91 (MQ=60)
TTCTCTCTCTGATTTAAACATCCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTAC‑A‑A‑‑‑T‑‑‑CCCCCCCCCcccg > SRR4302543.3704283/1‑90 (MQ=60)
TCTCTCTCTGATTTAAACATCCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTAC‑A‑A‑‑‑T‑‑‑CCCCCCCCCccccc > SRR4302543.5969373/1‑89 (MQ=60)
TCTCTCTCTGATTTAAACATCCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTAC‑A‑A‑‑‑T‑‑‑CCCCCCCCCGTTCG < SRR4302543.6416970/94‑1 (MQ=60)
CTCTCTCTGATTTAAACATCCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTAC‑A‑A‑‑‑T‑‑‑CCCCCCCCCccgctc > SRR4302543.1225973/1‑88 (MQ=60)
CTCTCTCTGATTTAAACATCCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTAC‑A‑A‑‑‑T‑‑‑CCCCCCCCCcccgtt < SRR4302543.3538974/94‑7 (MQ=60)
TCTCTCTGATTTAAACATCCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTAC‑A‑A‑‑‑T‑‑‑CCCCCCCCCcccttca > SRR4302543.2572847/1‑87 (MQ=60)
CTCTCTGATTTAAACATCCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTGTGCTAC‑A‑A‑‑‑TC‑‑CCCCCCCCCGTTCGAA > SRR4302543.4517605/1‑94 (MQ=60)
cctgTGATTTAAACACCCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTAC‑ACC‑‑‑C‑‑‑CCCCCCCCCGTTCGAAG < SRR4302543.1880352/90‑1 (MQ=60)
TCTCTGATTTAAACATCCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTAC‑A‑A‑‑‑T‑‑‑CCCCCCCCCcctctcgaa > SRR4302543.4323062/1‑85 (MQ=60)
CCTCTGATTTAAACATCCGCAGCCAACCGGGTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTAC‑A‑A‑‑‑TC‑‑CCCCCCCCCGTTCGAAG < SRR4302543.5236188/94‑1 (MQ=60)
CTCTGATTTAAACATCCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTAC‑A‑A‑‑‑T‑‑‑CCccacccccccatcccac > SRR4302543.5155383/1‑77 (MQ=60)
CTCTGATTTAAACATCCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTAC‑A‑A‑‑‑T‑‑‑CCCCCCCCCcccgtgcgaa > SRR4302543.4171650/1‑84 (MQ=60)
CTCTGATTTAAACATCCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTAC‑A‑A‑‑‑T‑‑‑CCCCCCCCCcccctgcgaa > SRR4302543.3526974/1‑84 (MQ=60)
TGATTTAAACATCCGCAGCCAACCGGTTAGCGGCTTACACGCGCTCACATTCAAATGCGATTCTGCTAC‑A‑A‑‑‑TC‑‑CCCCCCCCCGTTCGAAGATTG > SRR4302543.2732780/1‑94 (MQ=60)
GATTTAAACATCCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTAC‑A‑A‑‑‑TCC‑CCCCCCCCCGTTCGAAGATTG > SRR4302543.7846087/1‑94 (MQ=60)
ATTTAAACATCCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTAC‑A‑A‑‑‑TTC‑CCTCCCCCCctctcacaggtgg > SRR4302543.6206350/1‑81 (MQ=60)
ATTTAAACATCCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTAC‑A‑A‑‑‑TCC‑CCCCCCCCCGTTCGAAGATTGA > SRR4302543.5562731/1‑94 (MQ=60)
ATTTAAACACCCGCAGCCCACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTAC‑A‑A‑‑‑TCC‑CCCCCCCCCGTTCGAAGATTGA < SRR4302543.5266536/94‑1 (MQ=60)
ATTTAAACAACCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCCAC‑A‑A‑‑‑TCC‑CCCCCCCCCGTTCGAAGATTGA < SRR4302543.5266535/94‑1 (MQ=60)
TTAAACATCCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTAC‑A‑A‑‑‑TCC‑CCCCCCCCCGTTCGAAGATTGAGC < SRR4302543.6022848/94‑1 (MQ=60)
AAACATCCGCAGCCAACCGGTTAGCGGCTTACCCGCGGTCACATTCAAATGCGATTCTGCTAC‑A‑A‑‑‑TCCCCCCCCCCCCGTTCGAAGATTGAGCA < SRR4302543.5323913/94‑1 (MQ=60)
aaccaCCGCAGCCCACCGGGTAGCGGCCTACCCGCGGTCACATTCAAATGCGATTCTGCTAC‑A‑A‑‑‑TCCCCCCCCCCCCGTTCGAAGATTGAGCAA < SRR4302543.4190396/89‑1 (MQ=60)
AACATCCGCAGCCAACCGGTTCGCGGCTTACACGCGGGCACTTTCAAATGCGATTCTGCTAC‑A‑A‑‑‑TC‑‑CCCCCCCCCGTTCGAAGATTGAGCAATA < SRR4302543.6393310/94‑1 (MQ=60)
AACATCCGCAGCCAACCGGTTAGCGGCTTACACGGGGTCACATTCAAATGCGATTCTGCTAC‑A‑A‑‑‑TCCCCCCCCCCCCGTTCGAAGATTGAGCAA < SRR4302543.3670344/94‑1 (MQ=60)
AACACCCGCAGCCAGCCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTTGGCTAC‑A‑A‑‑‑TCC‑CCCCCCCCCGTTCGAAGATTGAGCAAT < SRR4302543.4054691/94‑1 (MQ=60)
acatcccgcGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTAC‑A‑A‑‑‑TCCCCCCCCCCCCGTTCGAAGATTGAGCAAT < SRR4302543.3974800/85‑1 (MQ=60)
ACATCCGCACCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTAC‑A‑A‑‑‑TC‑‑CCCCCCCCCGTTCGAAGATTGAGCAATAC < SRR4302543.510186/94‑1 (MQ=60)
CATCCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTAC‑A‑A‑‑‑T‑‑‑CCCCCCCCCcccttcgaacaatacgcaaaaa > SRR4302543.3110389/1‑72 (MQ=60)
ATCCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTAC‑A‑A‑‑‑TCC‑CCCCCCCCCGTTCGAAGATTaggcaatacc > SRR4302543.2025593/1‑84 (MQ=60)
ATCCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTAC‑A‑A‑‑‑TCC‑CCCCCCCCCCTTCGAAGATTGAGCAAaaac > SRR4302543.7502338/1‑90 (MQ=60)
ATCCCCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTAC‑A‑A‑‑‑TC‑‑CCCCCCCCCGTTCGAAGATTGAGCAATACAC < SRR4302543.3061086/94‑1 (MQ=60)
CGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTAC‑A‑A‑‑‑T‑‑‑CCCCCCCCCcccgggggggatatgcagaaacccca > SRR4302543.6528573/1‑68 (MQ=60)
ggccaacggttgagcggcttacagggggtccaattaaaatgcattttTGCTAC‑A‑A‑‑‑C‑‑‑CCCCCCCCCGTTCGAAGATTGAGCAATACACCTATGCG < SRR4302543.2198024/47‑1 (MQ=60)
CGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTAC‑A‑A‑‑‑TCC‑CCCCCCCCCGTTCGAAGATTGAGCAATACACCTATG < SRR4302543.1158127/94‑1 (MQ=60)
ccaacccgtttgcgggtgacacagggtccCATTCAAACGCGATTCTGCTAC‑A‑AGC‑C‑‑‑CCCCCCCCCGTTCGAAGATTGAGCAATACACCTATGCG < SRR4302543.4254695/65‑1 (MQ=47)
CCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTTCTAC‑A‑A‑‑‑TCCCCCCCCCCCCGTTCGAAGATTGAGCAATACACCTATGC < SRR4302543.4505991/94‑1 (MQ=60)
CCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTAC‑A‑A‑‑‑TC‑‑CCCCCCCCCGCTCTAAGAATGAGCCATAAACCTATGCGT > SRR4302543.3317098/1‑94 (MQ=60)
CCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTAC‑A‑A‑‑‑T‑‑‑CCCCCCCCCcccatcccgagcgcacaacacactctatcga > SRR4302543.31987/1‑63 (MQ=60)
CAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTAC‑A‑A‑‑‑T‑‑‑CCCCCCCCCccgtcgcagattttgaaaaaaacaccttggcc > SRR4302543.4755505/1‑62 (MQ=60)
CAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTAC‑A‑A‑‑‑T‑‑‑CCCCCCCCCccccctttccaagataaccaaaaccctacatc > SRR4302543.1510212/1‑62 (MQ=60)
CAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTAC‑A‑A‑‑‑T‑‑‑CCCCCCCCCccccatcctgagtgaggacagacaaacatgcc > SRR4302543.1556557/1‑62 (MQ=60)
cacagggTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTAC‑A‑AAC‑C‑‑‑CCCCCCCCCGTTCGAAGATTGAGCAATACACCTATGCGTC < SRR4302543.6551289/87‑1 (MQ=60)
AACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTAC‑A‑A‑‑‑T‑‑‑CCCCCCCCCcccgctcgtagtgttaaaaaaccaccctttcgc > SRR4302543.2319699/1‑61 (MQ=60)
AACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTAC‑A‑A‑‑‑T‑‑‑CCCCCCCCCccccctaccaaaatcagaaaaaccaccaactct > SRR4302543.5951171/1‑61 (MQ=60)
AACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTAC‑A‑A‑‑‑T‑‑‑CCCCCCCCCcccccctccgcgtatgagacatacccctactcg > SRR4302543.3470392/1‑61 (MQ=60)
ACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTAC‑A‑A‑‑‑T‑‑‑CCCCCCCCCcccctttgcgagttgatacaaaaaccccttgcgc > SRR4302543.4569847/1‑60 (MQ=60)
ACC‑GTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTAC‑A‑A‑‑‑TCCCCCCCCCCCCGTTCGAAGATTGAGCAATACACCTATGCGTCT < SRR4302543.5926313/94‑1 (MQ=60)
CCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTAC‑A‑A‑‑‑TC‑‑CCCCCCCCCGTTCGAAGATTGAGCAATACACCTATGCGTCTAA < SRR4302543.7222461/94‑1 (MQ=60)
GGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTAC‑A‑A‑‑‑TC‑‑CCCCCCCCCGTTCGAAGATTGAGCAATACACCTATGCGTCTAAAC < SRR4302543.4622984/94‑1 (MQ=60)
GGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTAC‑A‑A‑‑‑T‑‑‑CCcctccccccacttcttcattcagcaagatacctctctgtctgac > SRR4302543.6561785/1‑50 (MQ=60)
GGTTAGCGGCTTACACGCCGTCACATTCAAATGCGATTCTGCTAC‑A‑A‑‑‑TCC‑CCCCCCCCCGTTCGAAGATTGAGCAATACACCTATGCGTCTAAA < SRR4302543.4159092/94‑1 (MQ=60)
CGTTAGCGGCTTACACGCGGGCACATTCAAATGCGATTCTGCTAC‑A‑A‑‑‑TCC‑CCCCCCCCCGTTCGAAGATTGAGCAATACACCTATGCGTCTAAA < SRR4302543.4159093/94‑1 (MQ=60)
GTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTAC‑A‑A‑‑‑T‑‑‑CCACCCCCCccagtcgaacactgagcacaacacctatggagcgacac > SRR4302543.1385243/1‑56 (MQ=60)
tgcgggcttcaccgcggtccaATTCAATTGCGATTCTGCTCC‑A‑A‑‑‑G‑‑‑CCCCCCCCCGTTCGAAGATTGAGCAATACACCTATGCGTCTAAACCCCG < SRR4302543.2798479/73‑1 (MQ=60)
tagcggtttcaacggggccccatccaaatccaATTCTGCTAC‑A‑A‑‑‑C‑‑‑CCCCCCCCCGTTCGAAGATTGAGCAATACACCTATGCGTCTAAACCCCG < SRR4302543.2798482/62‑1 (MQ=60)
TAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTAC‑A‑A‑‑‑TC‑‑CCCCCCCCCGTTCGAAGATTGAGCAATACACCTATGCGTCTAAACCCC < SRR4302543.5783481/94‑1 (MQ=60)
TAGCGGCTTACACCCGGTGCCATTCAAATGCCTTTCCGCTTC‑A‑A‑‑‑TCC‑CCCCCCCCCGTTCGAAGATTGAGCAATACACCTATGCGTCTAAACCC < SRR4302543.6304014/94‑1 (MQ=42)
AGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTAC‑A‑A‑‑‑TC‑‑CCCCCCCCCGTTCCAAGGATTAGCAATACACCTATGCGTCTAAACCCCG > SRR4302543.730220/1‑94 (MQ=60)
AGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTAC‑A‑A‑‑‑TC‑‑CCCCCCCCCCTTTGAAGATTTACCCATCAACCTATGCGTCTAAACCCCG > SRR4302543.541789/1‑94 (MQ=50)
AGCCGCTTACACGCGGTCACATTCAAATGCGATTCTGCTACAA‑A‑‑‑C‑‑‑CCCCCCCCCGTTCGAAGATTGAGCAATACACCTATGCGTCTAAACCCCG < SRR4302543.6323361/94‑1 (MQ=60)
GCGGCTTACCCGCGGTCACATTCAAATTCGATTCTGCTAC‑A‑A‑‑‑TCC‑CCCCCCCCCGTTCGAAGATTGAGCAATACACCTATGCGTCTAAACCCCG < SRR4302543.19613/94‑1 (MQ=60)
CGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTAC‑A‑A‑‑‑TCC‑CCCCCCCCCGTTCGACGATTGAGAAATACACCTcaccgcctaaaccccgc > SRR4302543.4083535/1‑77 (MQ=60)
GGCTTACACGCGGTCACATTCAAATGCGATTCTGCTAC‑A‑A‑‑‑T‑‑‑CCCCCCCCCccgtttgaggattaggaaaaacacctatgcgcgtaacacccccc > SRR4302543.1638443/1‑50 (MQ=60)
GCTTACACGCGGTCACATTCAAATGCGATTCTGCTAC‑A‑A‑‑‑TC‑‑CCCCCCCCCGTTCGAAAATTGAGCAATACACCTACGCGTCTAAACCCCCGCCA > SRR4302543.1627521/1‑94 (MQ=60)
CTTACACGCGGTCACATTCAAATGCGATTCTGCTAC‑A‑A‑‑‑TCC‑CCCCCCCCCGTTCGACAAATGAGCAAAACACCATTGTGTCTTAACCCCGGCCA > SRR4302543.5354523/1‑94 (MQ=40)
ACGCGGTCACATTCAAATGCGATTCTGCCAC‑A‑A‑‑‑TCC‑CCCCCCCCCGTTCGAAGATTGAGCAATACACCTATGCGTCTAAACCCCGGCCAACAAC < SRR4302543.3773847/94‑1 (MQ=60)
cgGGTCACATTCAAATGCGATTCTTCTAC‑A‑A‑‑‑TC‑‑CCCCCCCCCGTTCGAAGATTGAGCAATACACCTATGCGTCTAAACCCCGGCCAACAACAAG < SRR4302543.1381886/92‑1 (MQ=60)
GGTCACATTCAAATGCGATTCTGCTAC‑A‑A‑‑‑TCCCCCCCCCCCCGTTCGAAAATTGAGCAATACACCTATGCGTCTAAACCCCCGCCAACAACAAA > SRR4302543.7619604/1‑94 (MQ=60)
GGTCACATTCAAATGCGATTCTGCTAC‑A‑A‑‑‑TCC‑CCCCCCCCCGTTCGAAGATTGGGAAATAAACCTATGCGTCTAAACCCCGccaaacacaaacc > SRR4302543.6491955/1‑81 (MQ=60)
GGTCACATTCAAATGCGATTCTGCTAC‑A‑A‑‑‑T‑‑‑CCCCCCCCCcccctcggaaagtgtggcacaccactttgcgtccaacacccgcgccacacccaag > SRR4302543.7619733/1‑39 (MQ=60)
GTCACATACAAATGCGATTCTGCTAC‑A‑A‑‑‑TCC‑CCCCCCCCCGTTCGAAGATTGAGCAATACACCTATGCGTCTAAACCCCGGCCAACAACAAGCT < SRR4302543.4718868/94‑1 (MQ=60)
TCACATTCAAATGCGATTCTGCTAC‑A‑A‑‑‑TCC‑CCCCCCCCCGTTCGAAGATTGAGCAATACACCTATGCGTCTAAACCCCGGCCAACAACAAGCTG < SRR4302543.6699419/94‑1 (MQ=60)
CACATTCAAATGCGATTCTGCTAC‑A‑A‑‑‑TC‑‑CCCCCCCCCGTTCGAAGATTGTGCAATAAACCTATGCGTCTAAAACCCCGCCACCAACAAGCactc > SRR4302543.3248101/1‑90 (MQ=60)
CACATTCAAATGCGATTCTGCTAC‑A‑A‑‑‑T‑‑‑CCCCCCCCCcccttggagatttgccaaaaaccacttgccgtcgaanccccggccacaaaaaagaatc > SRR4302543.458175/1‑36 (MQ=60)
CACATTCAAATGCGATTCTGCTAC‑A‑A‑‑‑T‑‑‑CCCCCCCCCcccttcgcacatctaaacaaaaacccaagcgctcaaaacccccccccacaaacaacag > SRR4302543.2014513/1‑36 (MQ=60)
CACATTCAAATGCGATTCTGCTAC‑A‑A‑‑‑T‑‑‑CCCCCCCCCcccgttgcgggattggccaatacccctacggtttcaaaccccgccacaacaaaacgcg > SRR4302543.5021779/1‑36 (MQ=60)
CACATTCAAATGCGATTCTGCTAC‑A‑A‑‑‑T‑‑‑CCCCCCCCCccccgggcgagagaggaaaacaaagaaacggtgtacacccgaccacaacaaaaccacg > SRR4302543.1539994/1‑36 (MQ=60)
CACATTCAAATGCGATTCTGCTAC‑A‑A‑‑‑T‑‑‑CCCCCCCCCcccccttcagcattgacgaaaaaacacacacgtctaacccccggccaacacaaacagt > SRR4302543.4783414/1‑36 (MQ=60)
ACATTCAAAGGCGATTCTTCTTC‑A‑A‑‑‑TCC‑CCCCCCCCCGTTCGAAGATTGAGCAATACCCCTATGCGTCTAAACCCCGGCCAACAACAAGCTGTC < SRR4302543.1061339/94‑1 (MQ=60)
TCAAATGCGATTCTGCTAC‑A‑A‑‑‑TCC‑CCCCCCCCCGTTCGAAGATTGAGCAATAAACCTATGCGTCTAAACCCCGCCCAACAACAAGCTGTCGAAT > SRR4302543.2679168/1‑94 (MQ=60)
TCAAATGCGATTCTCCTAC‑A‑A‑‑‑TCC‑CCCCCCCCCGTTCGAAGATTGAGCAATACACCTATGCGTCTAAACCCCGGCCAACAACAAGCTGTCGAAT < SRR4302543.7571414/94‑1 (MQ=60)
TAAATGCGATTCTGCTAC‑A‑AAC‑C‑‑‑CCCCCCCCCGTTCGAAGATTGAGCAATACACCTATGCGTCTAAACCCCGGCCAACAACAAGCTGTCGAATT < SRR4302543.6957741/94‑1 (MQ=60)
CAAATGCGATTCTGCTAC‑A‑A‑‑‑TCC‑CCCCCCCCCGTTCGAAGATTGAGCAATACACCTATGCGTCTAAACCCCGGCCAACAACAAGCTGTCGAATT < SRR4302543.3356930/94‑1 (MQ=60)
AATGCGATTCTGCTAC‑A‑ACCCC‑‑‑CCCCCCCCCGTTCGAAGATTGAGCAATACACCTATGCGTCTAAACCCCGGCCAACAACAAGCTGTCGAATTC < SRR4302543.2639774/94‑1 (MQ=60)
AATGCGATTCTGCTAC‑A‑A‑‑‑TCC‑CCCCCCCCCGTTCGAAGATTGAGCAAaaacaccacgcctctcaaacccggccccaaacaaactcacaaattct > SRR4302543.1907084/1‑47 (MQ=60)
GCGGTTCTGCTAC‑A‑A‑‑‑TC‑‑CCCCCCCCCGTTCGAAGATTGAGCAATACACCTATGCGTCTAAACCCCGGCCAACAACAAGCTGTCGAATTCGTTAC < SRR4302543.4428639/94‑1 (MQ=60)
GCGATTCTGCCACAA‑A‑‑‑C‑‑‑CCCCCCCCCGTTCGAAGATTGAGCAATACACCTATGCGTCTAAACCCCGGCCAACAACAAGCTGTCGAATTCGTTAC < SRR4302543.5531632/94‑1 (MQ=60)
CGATTCTGCTAC‑A‑A‑‑‑TC‑‑CCCCCCCCCGTTCGAAGATTGAGCAATACACCTATGCGTCTAAACCCCGGCCAACAACAAGCTGTCGAATTCGTTACC < SRR4302543.1921896/94‑1 (MQ=60)
CGATTCTGCTAC‑A‑A‑‑‑TC‑‑CCCCCCCCCGTTCGAAGATTGAGCAATACACCTATGCGTCTAAACCCCGGCCAACAACAAACTGTCGAATTCGTTACC > SRR4302543.7500132/1‑94 (MQ=60)
GATTCTGCTAC‑A‑A‑‑‑TC‑‑CCCCCCCCCGTTCGAAGATTGAGCAATACACCTATGCGTCTAAACCCCGGCCAACAACAAGCTGTCGAATTCGTTACCG < SRR4302543.4760968/94‑1 (MQ=60)
GATTCTGCTAC‑A‑A‑‑‑TC‑‑CCCCCCCCCGTTCGAAGATTGAGCAATAACCCTATGCGTCTAAACCCCGGCCAACAACAAGCTGCGGAATTCGTTACCG > SRR4302543.7308126/1‑94 (MQ=60)
TTCTGCTAC‑A‑A‑‑‑TCC‑CCCCCCCCCGTTCGAAGATTGAGCAATACACCTATGCGTCTAAACCCCGGCCAACAACAAGCTGTCGAATTCGTTACCGG < SRR4302543.4352298/94‑1 (MQ=60)
CTGCTAC‑A‑A‑‑‑TCC‑CCCCCCCCCGTTCGAAGATTGAGCAATACACCTATGCGTCTAAACCCCGGCCAACAACAAGCTGTCGAATTCGTTACCGGCC < SRR4302543.646224/94‑1 (MQ=60)
CTGCTAC‑A‑A‑‑‑TC‑‑CCCCCCCCCGTTCGAAGATTGAGCAAAACACCTATGCGTCTAAACCCCGGCCAACAACAAGCTGTCGAATTCGTTCCCGCCCC > SRR4302543.6324609/1‑94 (MQ=60)
CTAC‑A‑A‑‑‑TCC‑CCCCCCCCCGTTCGAAGATTGAGCAATACACCTATGCGTCTAAACCCCGGCCAACAACAAGCTGTCGAATTCGTTACCGGCCCCT < SRR4302543.3438315/94‑1 (MQ=60)
CTAC‑A‑A‑‑‑TC‑‑CCCCCCCCCGTTCGAAGATTGAGCAATACACCTATGCGTCTAAACCCCGGCCAACAACAAGCTGTCGAATTCGTTACCGGCCCCTG < SRR4302543.6945190/94‑1 (MQ=60)
TAC‑A‑A‑‑‑T‑‑‑CCCCCCCCCGTTCGAAGATTGAGCAATACACCTATGCGTCTAAACCCCGGCCAACAACAAGCTGTCGAATTCGTTACCGGCCCCTGCC < SRR4302543.5102388/94‑1 (MQ=60)
CCCCCCCCCGTTCGAAGATTGAGCAATACACCTATGCGTCTAAACCCCGGCCAACAACAAGCTGTCGAATTCGTTACCGGCCCCTGCCTGGTGC < SRR4302543.4493704/94‑1 (MQ=60)
CCCCCCCCCGTTCGAAGAAGGAGCAAAACACCCATGCGGCCAAACCCCGGCCAACAACAAGCGGGCGAATACGTTACCGGCCCCcgcccggggc > SRR4302543.6057563/1‑84 (MQ=29)
CCCCCCCCGTTCGAAGATTGAGCAATACACCTATGCGTCTAACCCCCGGCCAACAACAAGCTGTCGAATTCGTTACCGGCCCCTGCCTGGTGCT < SRR4302543.2779643/94‑1 (MQ=60)
CCCCCCCCGTTCGAAGATTGAGCAATACACCTATGCGTCTAAACCCCGGCCAACAACAAGCTGTCGAATTCGTTACCGGCCCCTGCCTGGTGCT > SRR4302543.1003876/1‑94 (MQ=60)
CCCCCCCCGTTCGAAGATTGAGCAATACACCTATGCGTCTAAACCCCGGCCAACAACAAGCTGTCGAATTCGTTACCGGCCCCTGCCTGGTGCT > SRR4302543.3442357/1‑94 (MQ=60)
CCCCCCCCGTTCGAAGATTGAGCAATACACCTATGCGTCTAAACCCCGGCCAACAACAAGCTGTCGAATTCGTTACCGGCCCCTGCCTGGTGCT > SRR4302543.3605927/1‑94 (MQ=60)
CCCCCCCCGTTCGAAGATTGAGCAATACACCTATGCGTCTAAACCCCGGCCAACAACAAGCTGTCGAATTCGTTACCGGCCCCTGCCTGGTGCT < SRR4302543.593807/94‑1 (MQ=60)
CCCCCCCCGTTCGAAGAGTGAGCAATACACCTATGCGTCTAAACCCCGGCCAACAACAAGCTGTGGAATTCGTTACCGGCCCCTGCCTGGTGCT < SRR4302543.5916041/94‑1 (MQ=60)
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CGATTTCGGTCTTCTCTCTCTGATTTAAACATCCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTAC‑A‑A‑‑‑T‑‑‑CCTCCCCCCGTTCGAAGATTGAGCAATACACCTATGCGTCTAAACCCCGGCCAACAACAAGCTGTCGAATTCGTTACCGGCCCCTGCCTGGTGCT > NC_000913/3958167‑3958353
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
