Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
1873 |
183.1 |
9376148 |
98.2% |
9207377 |
93.0 |
Breseq alignment
N/A
GATK/CNVnator alignment
BRESEQ :: bam2aln output
CGATTTCGGTCTTCTCTCTCTGATTTAAACATCCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTACAA‑‑‑T‑‑CC‑‑TCCCCCCGTTCGAAGATTGAGCAA‑TACACCTATGCGTCTAAACCCCGGCCAACAACAAGCTGTCGAATTCGTTACCGGCCCCTGCCTGGTGCT > NC_000913/3958167‑3958353
|
CGATTTCGGTCTTCTCTCTCTGATTTAAACATCCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTACAA‑‑‑T‑‑TC > SRR4302535.983777/1‑94 (MQ=60)
CGATTTCGGTCTTCTCTCTCTGATTTAAACATCCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTACAA‑‑‑T‑‑CC > SRR4302535.3351905/1‑94 (MQ=60)
GATTTCGGTCTTCTCTCTCTGATTTAAACATCCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTACAA‑‑‑T‑‑CC‑‑C > SRR4302535.1211083/1‑94 (MQ=60)
GATTTCGGTCTTCTCTCTCTGATTTAAACATCCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTACAA‑‑‑T‑‑CC‑‑C > SRR4302535.3715114/1‑94 (MQ=60)
ATTTCGGTCTTCTCTCTCTGATTTAAACATCCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTACAA‑‑‑T‑‑CC‑‑CC > SRR4302535.483457/1‑94 (MQ=60)
CGGTCTTCTCTCTCTGATTTAAACATCCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTACAA‑‑‑T‑‑CC‑‑CCCCCC > SRR4302535.4431327/1‑94 (MQ=60)
GGTCTTCTCTCTCTGATTTAAACATCCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTACAA‑‑‑T‑‑CC‑‑CCCCCCC > SRR4302535.3749349/1‑94 (MQ=60)
CTTCTCTCTCTGATTTAAACATCCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTACAA‑‑‑T‑‑CC‑‑CCCCCCCccc > SRR4302535.130773/1‑91 (MQ=60)
TTCTTTCTTTGATTTAAACACCCCCAACAAACCGGTTAGGGGCTTACCCGCGGTCCCATTCAAATGCGATTCTGCTACAA‑‑‑T‑‑CC‑‑CCCCCCCccgt < SRR4302535.3987308/94‑5 (MQ=37)
TCTCTCTCTGATTTAAACATCCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTACAA‑‑‑T‑‑CC‑‑CCCCCCCccctt > SRR4302535.1900257/1‑89 (MQ=60)
TCTCTCTGATTTAAACATCCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTACAA‑‑‑T‑‑CC‑‑CCCCCCCcccctcg > SRR4302535.3376176/1‑87 (MQ=60)
CTCTCTGATTTAAACATCCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTACAA‑‑‑T‑‑CC‑‑CCCCCCCcccttcga > SRR4302535.4611050/1‑86 (MQ=60)
TCTCTGATTTAAACATCCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTACAA‑‑‑TC‑CC‑‑CCCCCCCGTTCGAAG < SRR4302535.589677/94‑1 (MQ=60)
CTCTGATTTAAACATCCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTACAA‑‑‑T‑‑CC‑‑CCCCCCCccgctcgaca > SRR4302535.2905484/1‑84 (MQ=60)
CTCTGATTTAAACATCCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTACAA‑‑‑T‑‑CC‑‑CCCCCCCcccttcgaaa > SRR4302535.2024370/1‑84 (MQ=60)
TCTGATTTAAACATCCGCAGCCAACCGGGTAGCGGCTTACCCGCGGTCACATTCAAATGCGATTCTGCTACAA‑‑‑TCCCC‑‑CCCCCCCGTTCGAAGA < SRR4302535.852265/94‑1 (MQ=60)
TTGATTTAAACATCCGCAGCCAACCGGTTAGCGGCTTACCCGGGGTCACATTCAAATGCGATTCTGCTACAACC‑C‑‑CC‑‑CCCCCCCGTTCGAAGAT < SRR4302535.2138596/94‑1 (MQ=60)
CTGATTTAAACATCCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTACAA‑‑‑TC‑CC‑‑CCCCCCCGTTCGAAGATT < SRR4302535.3227268/94‑1 (MQ=60)
TGATTTAAACATCCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTACAA‑‑‑TCCCC‑‑CCCCCCCGTTCGAAGATT < SRR4302535.516420/94‑1 (MQ=60)
ATTTAAACATCCGCAGCCAACCGGTTAGCGGCTTTCACGCGGGCACATTCAAATGCGATTCTGCTACAAACCC‑‑CC‑‑CCCCCCCGTTCGAAGATTG < SRR4302535.3175530/94‑1 (MQ=60)
ATTTAAACATCCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTACAA‑‑‑TC‑CC‑‑CCCCCCCGTTCGAAGATTGAG > SRR4302535.3126205/1‑94 (MQ=60)
TTTAAACATCCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTACAACC‑C‑‑CC‑‑CCCCCCCGTTCGAAGATTGAG < SRR4302535.4655061/94‑1 (MQ=60)
TTTAAACACCCCCGGCCAACCGGTTAGCGCCTTACCCGCGGTCACCATCAAATGCGATTCTGCCACAACC‑C‑‑CC‑‑CCCCCCCGTTCGAAGATTGAG < SRR4302535.4488341/94‑1 (MQ=25)
TTAAACATCCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTACAA‑‑‑T‑‑CC‑‑CCCCCCCcccgtccaagattgagg > SRR4302535.1897456/1‑77 (MQ=60)
AACATCCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACCTTCAAATGCGATTCTGCTACAA‑‑‑T‑‑CCcgccccccgcgtcggcgctataccaaa > SRR4302535.2479614/1‑67 (MQ=60)
ACATCCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTACAA‑‑‑T‑‑CCcaccccccccttcacacactgtcacata > SRR4302535.2820450/1‑66 (MQ=60)
CATCCGCCGCCAACCGGGTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTACAA‑‑‑TCCCC‑‑CCCCCCCGTTCGAAGATTGAGCAA‑TAC < SRR4302535.997935/94‑1 (MQ=60)
CTCCGCAGCCAACCGGTTAGCCGCTTACACGCGGTAACATTCAAATGCGATTCTGCTACAA‑‑‑TCCCC‑‑CCCCCCCGTTCGAAGATTGAGCAA‑TACA < SRR4302535.1549322/94‑1 (MQ=60)
ATCCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTACAA‑‑‑T‑‑CCCACCCCCCCGTTCGAAGATTGAGCAA‑TACA < SRR4302535.4261008/94‑1 (MQ=60)
ATCCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTACAA‑‑‑T‑‑CC‑‑CCCCCCCccctccgcaaattagccataaaa > SRR4302535.3394621/1‑71 (MQ=60)
ACCGCAGCCAACCGGTTAGCGGCTTACCCGCGGTCACATTCAAATGCGATTCTGCTACAA‑‑‑TCCCC‑‑CCCCCCCGTTCGAAGATTGAGCAA‑TACAC < SRR4302535.1525302/94‑1 (MQ=60)
CGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTACAA‑‑‑TCCCC‑‑CCCCCCCGTTCGAAGATTGAGCAA‑TACACCTATG < SRR4302535.3299837/94‑1 (MQ=60)
AGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTACAA‑‑‑TCCCC‑‑CCCCCCCGTTCGAAGATTGAGCAA‑TACACCTATG < SRR4302535.3980717/94‑1 (MQ=60)
AGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTACAA‑‑‑TCCCC‑‑CCCCCCCGTTCGAAGATTGAGCAA‑TACACCTATC > SRR4302535.588762/1‑94 (MQ=60)
CCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTACAA‑‑‑TCCCC‑‑CCCCCCCGTTCGAAGATTGAGCAA‑TACACCTATGCG < SRR4302535.4101991/94‑1 (MQ=60)
CAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTACAA‑‑‑T‑‑CC‑‑CCCCCCCccctcctaaaaataagaccaaacacatatgct > SRR4302535.4009678/1‑62 (MQ=60)
ACCGGTTAGGGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTACAA‑‑‑TCCCC‑‑CCCCCCCGTTCGAAGATTGAGCAA‑TACACCTATGCGTCT < SRR4302535.4461296/94‑1 (MQ=60)
cgttagcggctttccagcgggccCATTCAAATGGGATTCTGCTACAA‑‑‑TCCCC‑‑CCCCCCCGTTCGAAGATTGAGCAA‑TACACCTATGCGTCTAAA < SRR4302535.4529898/71‑1 (MQ=60)
GGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTACAA‑‑‑T‑‑CC‑‑CCCCCCCcccttcgagacttggcaataaaaccattcggcttcac > SRR4302535.4237131/1‑57 (MQ=60)
GTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTACAA‑‑‑TC‑CC‑‑CCCCCCCGTTCGAAGATTGAGCAA‑TACACCTATGCGTCTAAACC < SRR4302535.690931/94‑1 (MQ=60)
GTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTACAA‑‑‑T‑‑CC‑‑CCCCCCCccggtcgaaagtttagaaatacacacagggttctaaac > SRR4302535.928143/1‑56 (MQ=60)
TTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTACAA‑‑‑TC‑CC‑‑CCCCCCCGTTCGAAGATTGAGCAA‑TACACCTATGCGTCTAAACCC < SRR4302535.657527/94‑1 (MQ=60)
CGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTACAA‑‑‑TCCCC‑‑CCCCCCCGTTCGAAGATTGAGCAA‑TACACCTATGCGTCTAAACCCCGG < SRR4302535.2484797/94‑1 (MQ=60)
CGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTACAA‑‑‑TCCCC‑‑CCCCCCCGTTCGAAGATTGAGCAA‑TACACCAATACGTCTAAACCCCGC > SRR4302535.2407445/1‑94 (MQ=60)
GCTTACACGCGGTCACATTCAAATGCGATTCTGCTACAA‑‑‑T‑‑CC‑‑CCCCCCCcccctcgcgaaataacgaaaaaacccatctcttcacacccccccc > SRR4302535.3396798/1‑49 (MQ=60)
GCTTACACGCGGTCACATTCAAATGCGATTATGCTACAA‑‑‑TC‑CC‑‑CCCCCCCGTTCGAAGATTGAGCAA‑TAAACCTATGGGCCTAAACCCCGGCCA > SRR4302535.4130396/1‑94 (MQ=60)
taccgccggtacaATTCAAATGGGATTCTGCTCCAA‑‑‑TC‑CC‑‑CCCCCCCGTTCGAAGATTGAGCAA‑TACACCTATGCGTCTAAACCCCGGCCAACA < SRR4302535.3879931/81‑1 (MQ=60)
ACGCGGTCACATTCAAATGCGATTCTGCTACAA‑‑‑TCCCC‑‑CCCCCCCGCTCGAAGATTAAGCAA‑AACACCTATTCGTCTAAACCCCGcgcaacaaa > SRR4302535.194176/1‑85 (MQ=60)
CGCGGTCACATTCAAATGCGATTCTGCTACAA‑‑‑TCCCC‑‑CCCCCCCGTTCGAAGATTGAGCAA‑TACACCTATGCGTCTAAACCCCGGCCAACAACA < SRR4302535.4607990/94‑1 (MQ=60)
GCGGTCACATTCAAATGCGATTTCGCTAAAAC‑‑C‑‑CC‑‑CCCCCCCGTTCGAAGATTGAGCAA‑TACACCTATGCGTCTAAACCCCGGCCAACAACAAG < SRR4302535.2132806/94‑1 (MQ=60)
GCGGTCACATTCAAATGCGATTCTGTTACAA‑‑‑TCCCC‑‑CCCCCCCGTTCGAAGATTGAGCAA‑TACACCTATGCGTCTAAACCCCGGCCAACAACAA < SRR4302535.4504898/94‑1 (MQ=60)
CGGTCACATTCAAATGCGATTCTGCTACAA‑‑‑T‑‑CC‑‑CCCCCCCcccctccgaagatggggcaaaacctcacccgtctcacccccgcccacacaaaac > SRR4302535.2522563/1‑40 (MQ=60)
CGGTCACATTCAAATGCGATTCTGCTACAA‑‑‑T‑‑CC‑‑CCCCCCCcccctccaagcttgggaaaaacacctatgcgcctcaaaaccccccacaacaaca > SRR4302535.2666406/1‑40 (MQ=60)
CGGTCACATTCAAATGCGATTCTGCTACAA‑‑‑T‑‑CC‑‑CCCCCCCcccccccccccattcgcgaataaaaaaaatcattaaacccacaccccaaaaaaa > SRR4302535.3510603/1‑40 (MQ=60)
GGTCACATTCAAATGCGATTCTGCTACAA‑‑‑T‑‑CC‑‑CCCCCCCccggtcgaagatttagaaaaacacattatcgtttaaacgtcccccaataacacgc > SRR4302535.4284713/1‑39 (MQ=60)
GGTCACATTCAAAAGCGATTCTGCTACAACC‑C‑‑CC‑‑CCCCCCCGTTCGAAGATTGAGCAA‑TACACCTATGCGTCTAAACCCCGGCCAACAACAAGC < SRR4302535.2334895/94‑1 (MQ=60)
GTCACATTCAAATGCGATTCTGCTACAA‑‑‑TCCCC‑‑CCCCCCCGTTCGAAGATTGAGCAA‑TACACCTATGCGTCTAAACCCCGGCCAACAACAAGCT < SRR4302535.829918/94‑1 (MQ=60)
GTCACATTCAAATGCGATTCTGCTACAA‑‑‑TC‑CC‑‑CCCCCCCGTTCGAAGATTGAGCAA‑TACACCTATGCGTCTAAACCCCGGCCAACAACAAGCTG > SRR4302535.773698/1‑94 (MQ=60)
GTCACATTCAAATGCCATTCTGCTACAA‑‑‑TCCCC‑‑CCCCCCCGTTCGAAGATTGAGCAA‑TACACCTATGCGTCTAAACCCCGGCCAACAACAAGCT < SRR4302535.3364553/94‑1 (MQ=60)
TCACATTCAAATGCGATTCTGCTACAA‑‑‑T‑‑CC‑‑CCCCCCCcccttcgacgatgatgaataacaaccaacggtctaaacacccgccacccaccagagt > SRR4302535.1947568/1‑37 (MQ=60)
CACATTCAAATGCGATTCTGCTACAA‑‑‑TCCCC‑‑CCCCCCCGTTCGAAGATTGGGAAA‑TCAACCAATGCGGCTAAACCCCGGCCAAaaaaaaagtgg > SRR4302535.1380872/1‑83 (MQ=33)
ACATTCAAATGCGATTCTGCTACAA‑‑‑TCCCC‑‑CCCCCCCGTTCGAAGATTG‑GCAACTACACCCATGGGTCTAAAACCCGGCCAAAAACAAGCTtca > SRR4302535.4400146/1‑91 (MQ=37)
CATTCAACTGCGATTCTGCTACAA‑‑‑TC‑CC‑‑CCCCCCCGTTCGAAGATTGAGGAA‑TACACCTATGCGTGTAAACCCCGGCCAACAACAAGCTGTCGA > SRR4302535.41795/1‑94 (MQ=60)
CATTCAAATGCGATTCTGCTACAA‑‑‑TCCCC‑‑CCCCCCCCTTCGACGATTGAGGAA‑TATACCCACGCGTCTAAACCCCGGCCAACAAaaaactggcg > SRR4302535.2777637/1‑84 (MQ=35)
TCAAATGCGATTCTGCTACAA‑‑‑T‑‑CC‑‑CCCCCCCGTTCGAAGATTGAGCAA‑TACACCTATGCGTCTAAACCCCGGCCAACAACAAGCTGTCGAAATC > SRR4302535.2788309/1‑94 (MQ=60)
TAAATGCGAATCTGCTACAA‑‑‑TCCCC‑‑CCCCCCCGTTCGAAGATTGAGCAA‑TACACCTATGCGTCTAAACCCCGGCCAACAACAAGCTGTCGAATT < SRR4302535.4564870/94‑1 (MQ=60)
AAATGCGATTCTGCTACAAG‑‑C‑‑CC‑‑CCCCCCCGTTCGAAGATTGAGCAA‑TACACCTATGCGTCTAAACCCCGGCCAACAACAAGCTGTCGAATTCG < SRR4302535.2623058/94‑1 (MQ=60)
AAATGCGATTCTGCTACAA‑‑‑TCCCC‑‑CCCCCCCGTTCGAAGATTGGGCAA‑TACACCcctgggccgaacccccagcccacacaaagctgccgaatcc > SRR4302535.580347/1‑54 (MQ=38)
AAAGGCGATTCTGCAACAAC‑‑C‑‑CC‑‑CCCCCCCGTTCGAAGATTGAGCAA‑TACACCTATGCGTCTAAACCCCGGCCAACAACAAGCTGTCGAATTCG < SRR4302535.2611230/94‑1 (MQ=60)
GCGATTCTGCTACAA‑‑‑TCCCC‑‑CCCCCCCGTTCGAAGATTGAGCAA‑TACACCTATGCGTCTAAACCCCGGCCAACAACAAGCTGTCGAATTCGTTA < SRR4302535.2188909/94‑1 (MQ=60)
CGATTCTGCTACAAAC‑C‑‑CC‑‑CCCCCCCGTTCGAAGATTGAGCAA‑TACACCTATGCGTCTAAACCCCGGCCAACAACAAGCTGTCGAATTCGTTAC < SRR4302535.3452664/94‑1 (MQ=60)
ATTCTGCCACAA‑‑‑TCCCC‑‑CCCCCCCGTTCGAAGATTGAGCAA‑TACACCTATGCGTCTAAACCCCGGCCAACAACAAGCTGTCGAATTCGTTACCG < SRR4302535.2282688/94‑1 (MQ=60)
C‑‑CCCCCCCGTTCGAAGATTGAGCAA‑TACACCTATGCGCCTAAACCCCGGCCAACAACAAGCTGTCGAATTCGTTACCGGCCCCTCCCTGGGGCT > SRR4302535.3982444/1‑94 (MQ=60)
|
CGATTTCGGTCTTCTCTCTCTGATTTAAACATCCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTACAA‑‑‑T‑‑CC‑‑TCCCCCCGTTCGAAGATTGAGCAA‑TACACCTATGCGTCTAAACCCCGGCCAACAACAAGCTGTCGAATTCGTTACCGGCCCCTGCCTGGTGCT > NC_000913/3958167‑3958353
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 3 ≤ ATCG/ATCG < 5 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
